
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS393_3
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS393_3.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39        68 - 106         4.97    18.37
  LONGEST_CONTINUOUS_SEGMENT:    39        69 - 107         4.95    18.32
  LCS_AVERAGE:     31.05

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        82 - 104         1.90    17.40
  LCS_AVERAGE:     12.96

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        34 - 51          0.99    21.55
  LONGEST_CONTINUOUS_SEGMENT:    18        35 - 52          0.77    22.05
  LCS_AVERAGE:      8.53

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    9   26     3    3    3    5    8    9   10   12   14   19   20   20   22   23   24   25   25   26   26   30 
LCS_GDT     N       2     N       2      3    9   26     3    3    4    7    9   11   13   15   18   19   20   20   22   23   24   25   25   26   26   30 
LCS_GDT     I       3     I       3      5    9   26     3    4    6    7    9   11   13   15   18   19   20   20   22   23   24   25   27   32   42   51 
LCS_GDT     E       4     E       4      5    9   32     3    4    6    7    9   11   13   15   18   19   20   20   22   24   25   33   34   40   44   51 
LCS_GDT     R       5     R       5      5    9   33     3    4    6    7    8   11   13   19   23   25   28   31   32   36   41   44   49   52   55   58 
LCS_GDT     L       6     L       6      5    9   33     3    4    6    7    9   11   14   19   23   25   28   31   35   39   45   46   51   53   56   58 
LCS_GDT     T       7     T       7      5    9   33     0    3    5    7    9   13   18   20   24   26   29   35   39   44   45   48   52   54   57   59 
LCS_GDT     T       8     T       8      3    9   33     0    3    6    7    9   13   18   20   24   26   29   35   39   44   45   48   52   55   57   59 
LCS_GDT     L       9     L       9      3    9   33     3    3    6    7    8   13   18   20   24   26   29   35   39   44   45   48   52   55   57   59 
LCS_GDT     Q      10     Q      10      3    6   33     3    3    4    6    8   13   18   20   24   26   29   35   39   44   45   48   52   55   57   59 
LCS_GDT     P      11     P      11      3    5   33     3    3    4    7    9   13   18   20   24   26   29   35   39   44   45   48   52   55   57   59 
LCS_GDT     V      12     V      12      3   11   33     3    3    4    7   10   13   18   20   24   26   29   35   39   44   45   48   52   55   57   59 
LCS_GDT     W      13     W      13     10   11   33     5   10   10   10   13   15   19   20   23   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     D      14     D      14     10   11   33     5   10   10   10   13   15   19   20   23   25   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     R      15     R      15     10   11   33     5   10   10   10   13   15   19   20   23   25   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     Y      16     Y      16     10   11   33     5   10   10   10   13   15   17   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     D      17     D      17     10   11   33     5   10   10   10   13   15   16   20   23   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     T      18     T      18     10   11   33     5   10   10   10   13   15   16   20   23   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     Q      19     Q      19     10   11   33     5   10   10   10   13   15   16   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     I      20     I      20     10   11   33     5   10   10   10   11   15   18   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     H      21     H      21     10   11   33     5   10   10   10   11   15   16   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     N      22     N      22     10   11   33     5   10   10   10   13   15   15   19   24   26   30   32   36   44   45   48   52   55   57   59 
LCS_GDT     Q      23     Q      23      4   11   33     3    3    5    8   11   13   18   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     K      24     K      24      4    7   33     3    3    5    7   10   14   18   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     D      25     D      25      4    9   33     3    4    7    8    9   14   18   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     N      26     N      26      4    9   33     3    4    7    8    9   14   18   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     D      27     D      27      4    9   33     3    5    7    8   10   14   18   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     N      28     N      28      4    9   33     3    4    4    6    8   11   16   18   23   24   27   30   37   44   45   48   52   54   57   59 
LCS_GDT     E      29     E      29      4    9   33     3    4    5    8   10   14   16   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     V      30     V      30      3    9   33     3    3    5    6    8   14   16   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     P      31     P      31      4    9   33     3    4    5    6   10   13   18   20   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     V      32     V      32      4    9   33     3    3    5    6   11   14   20   22   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     H      33     H      33      4   21   33     3    4    5    8   12   19   20   22   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     Q      34     Q      34     18   21   33     3   11   14   19   20   21   21   22   24   26   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     V      35     V      35     18   21   33     6   17   18   19   20   21   21   23   24   27   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     S      36     S      36     18   21   33     6   17   18   19   20   21   21   23   24   27   29   31   39   44   45   48   52   55   57   59 
LCS_GDT     Y      37     Y      37     18   21   33     6   17   18   19   20   21   21   23   24   27   29   29   30   36   41   44   49   52   56   58 
LCS_GDT     T      38     T      38     18   21   29     6   17   18   19   20   21   21   22   24   27   29   29   35   41   44   46   52   53   57   59 
LCS_GDT     N      39     N      39     18   21   29     5   17   18   19   20   21   21   23   24   27   29   35   39   44   45   48   52   55   57   59 
LCS_GDT     L      40     L      40     18   21   29     5   17   18   19   20   21   21   23   24   27   29   35   39   44   45   48   52   55   57   59 
LCS_GDT     A      41     A      41     18   21   29     7   17   18   19   20   21   21   23   24   27   29   31   39   42   45   48   52   55   57   59 
LCS_GDT     E      42     E      42     18   21   29     5   17   18   19   20   24   29   33   35   38   40   41   42   43   46   48   52   55   57   59 
LCS_GDT     M      43     M      43     18   21   29     6   17   18   19   20   21   21   33   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     V      44     V      44     18   21   29     7   17   18   19   20   21   21   27   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     G      45     G      45     18   21   29     5   17   18   19   20   21   21   23   32   34   40   41   42   43   46   48   52   55   57   59 
LCS_GDT     E      46     E      46     18   21   29     7   17   18   19   20   21   21   23   26   31   35   41   42   43   46   48   52   55   57   59 
LCS_GDT     M      47     M      47     18   21   29     7   17   18   19   20   21   21   23   32   35   40   41   42   43   46   48   52   55   57   59 
LCS_GDT     N      48     N      48     18   21   29     7   17   18   19   20   21   21   23   24   27   29   34   39   44   45   48   52   55   57   59 
LCS_GDT     K      49     K      49     18   21   29     7   17   18   19   20   21   21   23   24   27   29   31   37   42   45   47   51   55   57   59 
LCS_GDT     L      50     L      50     18   21   29     7   17   18   19   20   21   21   23   24   27   29   29   31   38   42   46   50   55   57   59 
LCS_GDT     L      51     L      51     18   21   29     4   17   18   19   20   21   21   22   24   27   29   31   39   43   45   48   52   55   57   59 
LCS_GDT     E      52     E      52     18   21   29     6   12   18   19   20   21   21   23   24   27   29   31   39   43   45   48   52   55   57   59 
LCS_GDT     P      53     P      53     14   21   29     3    6   13   19   20   21   21   23   24   27   29   29   30   34   41   46   49   55   57   59 
LCS_GDT     S      54     S      54      5   21   29     4    4    6   13   18   21   21   23   24   27   29   29   30   31   38   44   49   55   57   59 
LCS_GDT     Q      55     Q      55      5    7   29     4    4    6    6    8   10   17   23   24   27   29   29   30   31   33   36   39   42   46   49 
LCS_GDT     V      56     V      56      5    7   29     4    4    6    7    8   10   17   23   24   27   29   29   31   33   37   39   42   45   46   50 
LCS_GDT     H      57     H      57      5    7   29     4    4    6    7    8   13   17   23   24   28   32   39   41   43   46   46   47   48   50   51 
LCS_GDT     L      58     L      58      5    8   29     3    4    7    9   14   19   25   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     K      59     K      59      5    8   29     3    4    9   10   12   15   23   30   35   38   40   41   42   43   46   46   47   48   50   52 
LCS_GDT     F      60     F      60      6    8   29     3    5    9   10   12   14   23   30   35   38   40   41   42   43   46   46   47   49   52   54 
LCS_GDT     E      61     E      61      6    8   29     3    5    9   10   12   14   14   16   18   20   23   26   28   32   36   39   47   48   49   51 
LCS_GDT     L      62     L      62      6    8   29     4    4    9   10   12   14   14   16   17   20   22   26   28   32   36   39   42   45   46   50 
LCS_GDT     H      63     H      63      6    8   26     4    5    9   10   12   14   14   16   18   21   23   26   30   32   37   39   42   45   46   50 
LCS_GDT     D      64     D      64      6    8   26     4    5    9   10   12   14   14   16   18   21   24   27   31   33   37   39   42   45   46   50 
LCS_GDT     K      65     K      65      6    8   26     3    5    9   10   12   14   14   16   19   22   24   28   31   33   37   39   42   45   46   50 
LCS_GDT     L      66     L      66      3    6   26     3    3    4    5    6   12   14   15   17   21   22   26   28   32   36   39   42   45   46   50 
LCS_GDT     N      67     N      67      3    7   38     3    3    4    9   12   14   14   16   20   23   25   28   31   34   37   41   43   46   49   50 
LCS_GDT     E      68     E      68      3    7   39     3    3    5   10   12   14   17   19   23   27   29   33   38   42   46   46   47   48   50   50 
LCS_GDT     Y      69     Y      69      5    7   39     3    4    5    8   11   13   15   17   23   27   29   33   38   42   46   46   47   48   50   51 
LCS_GDT     Y      70     Y      70      5    7   39     4    5    9   10   12   14   17   20   23   27   31   38   41   43   46   46   47   48   50   51 
LCS_GDT     V      71     V      71      5    7   39     3    5    9   10   19   20   20   24   31   37   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     K      72     K      72      5    7   39     3    4    9   15   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     V      73     V      73      5    7   39     3    4    6   15   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     I      74     I      74      4    8   39     3    4    6   12   20   24   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     E      75     E      75      4    8   39     3    4    5   10   18   24   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     D      76     D      76      4    8   39     3    4    5    8   16   22   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     S      77     S      77      5    8   39     4    4    6    8   14   17   20   30   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     T      78     T      78      5    8   39     4    4    6   10   17   22   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     N      79     N      79      5    8   39     4    4    9   14   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     E      80     E      80      5    8   39     4    4    6    9   15   21   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     V      81     V      81      5    8   39     4    4    6    8   14   22   27   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     I      82     I      82      4   23   39     4    4    5   13   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     R      83     R      83      6   23   39     0    4    7   13   20   25   28   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     E      84     E      84      6   23   39     3    5    7   13   20   25   28   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     I      85     I      85      6   23   39     3    5    7   16   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     P      86     P      86      6   23   39     3    9   16   18   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     P      87     P      87     14   23   39     4    9   15   18   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     K      88     K      88     14   23   39     4    5    8   16   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     R      89     R      89     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     W      90     W      90     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     L      91     L      91     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     D      92     D      92     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   51 
LCS_GDT     F      93     F      93     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   47   48   50   53 
LCS_GDT     Y      94     Y      94     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   47   49   52   54 
LCS_GDT     A      95     A      95     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   49   55   57   59 
LCS_GDT     A      96     A      96     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   49   55   57   59 
LCS_GDT     M      97     M      97     16   23   39     5   13   16   18   21   25   29   33   35   38   40   41   42   43   46   46   48   55   57   59 
LCS_GDT     T      98     T      98     16   23   39     8   13   16   18   21   25   29   33   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     E      99     E      99     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     F     100     F     100     16   23   39     9   13   16   18   21   25   29   33   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     L     101     L     101     16   23   39     4   13   16   18   21   25   29   33   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     G     102     G     102     16   23   39     4   13   16   18   21   25   29   33   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     L     103     L     103     16   23   39     4   13   16   18   21   25   29   33   35   38   40   41   42   44   46   48   52   55   57   59 
LCS_GDT     F     104     F     104     16   23   39     4   10   16   18   21   25   29   32   35   38   40   40   42   43   45   46   49   54   57   59 
LCS_GDT     V     105     V     105      3   22   39     3    6   10   14   17   20   24   26   28   33   36   39   41   44   45   48   52   55   57   59 
LCS_GDT     D     106     D     106      4    5   39     3    4    5    6    7   10   14   18   22   25   30   35   39   44   45   48   52   55   57   59 
LCS_GDT     E     107     E     107      4    5   39     3    4    4    5    5    5    7   13   17   25   30   35   39   44   45   48   52   54   57   59 
LCS_GDT     K     108     K     108      4    5   38     3    4    4    6    8   13   18   20   24   26   29   31   33   39   42   46   49   52   55   58 
LCS_GDT     K     109     K     109      4    5   25     3    4    5    6    7   10   11   19   23   26   29   30   30   34   36   40   45   49   52   53 
LCS_AVERAGE  LCS_A:  17.51  (   8.53   12.96   31.05 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     17     18     19     21     25     29     33     35     38     40     41     42     44     46     48     52     55     57     59 
GDT PERCENT_CA   8.26  15.60  16.51  17.43  19.27  22.94  26.61  30.28  32.11  34.86  36.70  37.61  38.53  40.37  42.20  44.04  47.71  50.46  52.29  54.13
GDT RMS_LOCAL    0.27   0.68   0.77   1.03   1.71   1.94   2.31   2.59   2.73   2.97   3.19   3.45   3.49   5.15   4.54   5.46   5.79   6.32   6.20   6.52
GDT RMS_ALL_CA  17.58  22.14  22.05  22.01  17.59  17.50  18.04  17.93  17.89  17.88  17.97  18.05  18.06  16.06  18.21  16.45  16.80  17.12  16.70  17.05

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         42.019
LGA    N       2      N       2         40.889
LGA    I       3      I       3         36.143
LGA    E       4      E       4         40.124
LGA    R       5      R       5         36.656
LGA    L       6      L       6         30.912
LGA    T       7      T       7         27.887
LGA    T       8      T       8         24.928
LGA    L       9      L       9         23.764
LGA    Q      10      Q      10         26.976
LGA    P      11      P      11         21.893
LGA    V      12      V      12         18.883
LGA    W      13      W      13         18.520
LGA    D      14      D      14         20.535
LGA    R      15      R      15         17.654
LGA    Y      16      Y      16         18.161
LGA    D      17      D      17         24.001
LGA    T      18      T      18         25.058
LGA    Q      19      Q      19         22.575
LGA    I      20      I      20         24.469
LGA    H      21      H      21         30.451
LGA    N      22      N      22         30.888
LGA    Q      23      Q      23         31.020
LGA    K      24      K      24         30.779
LGA    D      25      D      25         29.596
LGA    N      26      N      26         26.250
LGA    D      27      D      27         24.124
LGA    N      28      N      28         24.538
LGA    E      29      E      29         21.392
LGA    V      30      V      30         22.386
LGA    P      31      P      31         19.277
LGA    V      32      V      32         19.903
LGA    H      33      H      33         22.375
LGA    Q      34      Q      34         24.125
LGA    V      35      V      35         19.841
LGA    S      36      S      36         20.157
LGA    Y      37      Y      37         18.241
LGA    T      38      T      38         12.109
LGA    N      39      N      39         11.124
LGA    L      40      L      40         11.513
LGA    A      41      A      41          8.806
LGA    E      42      E      42          3.045
LGA    M      43      M      43          3.995
LGA    V      44      V      44          5.090
LGA    G      45      G      45          7.504
LGA    E      46      E      46          7.974
LGA    M      47      M      47          6.152
LGA    N      48      N      48         11.318
LGA    K      49      K      49         15.306
LGA    L      50      L      50         14.860
LGA    L      51      L      51         15.102
LGA    E      52      E      52         20.343
LGA    P      53      P      53         23.498
LGA    S      54      S      54         20.297
LGA    Q      55      Q      55         19.109
LGA    V      56      V      56         15.054
LGA    H      57      H      57          8.447
LGA    L      58      L      58          3.840
LGA    K      59      K      59          5.410
LGA    F      60      F      60          5.539
LGA    E      61      E      61         11.976
LGA    L      62      L      62         15.323
LGA    H      63      H      63         18.899
LGA    D      64      D      64         20.271
LGA    K      65      K      65         22.102
LGA    L      66      L      66         22.446
LGA    N      67      N      67         19.465
LGA    E      68      E      68         13.815
LGA    Y      69      Y      69         12.625
LGA    Y      70      Y      70         10.128
LGA    V      71      V      71          6.583
LGA    K      72      K      72          1.799
LGA    V      73      V      73          1.998
LGA    I      74      I      74          2.384
LGA    E      75      E      75          2.958
LGA    D      76      D      76          3.609
LGA    S      77      S      77          4.867
LGA    T      78      T      78          3.298
LGA    N      79      N      79          1.851
LGA    E      80      E      80          3.805
LGA    V      81      V      81          4.619
LGA    I      82      I      82          2.472
LGA    R      83      R      83          3.721
LGA    E      84      E      84          3.916
LGA    I      85      I      85          2.103
LGA    P      86      P      86          1.059
LGA    P      87      P      87          0.601
LGA    K      88      K      88          3.131
LGA    R      89      R      89          1.205
LGA    W      90      W      90          2.228
LGA    L      91      L      91          3.412
LGA    D      92      D      92          2.082
LGA    F      93      F      93          1.059
LGA    Y      94      Y      94          3.138
LGA    A      95      A      95          2.824
LGA    A      96      A      96          1.036
LGA    M      97      M      97          1.576
LGA    T      98      T      98          2.861
LGA    E      99      E      99          1.585
LGA    F     100      F     100          1.363
LGA    L     101      L     101          3.012
LGA    G     102      G     102          2.930
LGA    L     103      L     103          2.300
LGA    F     104      F     104          5.342
LGA    V     105      V     105         10.625
LGA    D     106      D     106         16.508
LGA    E     107      E     107         17.754
LGA    K     108      K     108         21.909
LGA    K     109      K     109         26.454

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     33    2.59    26.835    23.802     1.226

LGA_LOCAL      RMSD =  2.593  Number of atoms =   33  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.960  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 14.237  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.617906 * X  +   0.734748 * Y  +   0.279889 * Z  +   0.328797
  Y_new =  -0.646759 * X  +  -0.272560 * Y  +  -0.712330 * Z  +   0.262249
  Z_new =  -0.447097 * X  +  -0.621173 * Y  +   0.643621 * Z  + -18.218676 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.767652    2.373941  [ DEG:   -43.9832    136.0168 ]
  Theta =   0.463517    2.678076  [ DEG:    26.5576    153.4424 ]
  Phi   =  -2.333384    0.808209  [ DEG:  -133.6930     46.3070 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS393_3                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS393_3.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   33   2.59  23.802    14.24
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS393_3
PFRMAT TS
TARGET T0350
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      -8.247 -17.129 -35.949  1.00 25.00           C
ATOM      2  CA  ASN     2      -8.706 -13.597 -34.447  1.00 25.00           C
ATOM      3  CA  ILE     3      -8.547 -13.856 -30.642  1.00 25.00           C
ATOM      4  CA  GLU     4      -7.556 -17.266 -29.286  1.00 25.00           C
ATOM      5  CA  ARG     5      -4.797 -17.151 -26.740  1.00 25.00           C
ATOM      6  CA  LEU     6      -5.247 -13.429 -26.370  1.00 25.00           C
ATOM      7  CA  THR     7      -5.047 -10.248 -24.290  1.00 25.00           C
ATOM      8  CA  THR     8      -7.419  -7.601 -22.929  1.00 25.00           C
ATOM      9  CA  LEU     9      -8.593  -5.957 -26.095  1.00 25.00           C
ATOM     10  CA  GLN    10     -11.995  -4.162 -26.116  1.00 25.00           C
ATOM     11  CA  PRO    11     -11.945  -4.156 -22.286  1.00 25.00           C
ATOM     12  CA  VAL    12     -12.519  -5.214 -18.632  1.00 25.00           C
ATOM     13  CA  TRP    13      -9.820  -2.778 -17.614  1.00 25.00           C
ATOM     14  CA  ASP    14     -12.234  -1.321 -15.021  1.00 25.00           C
ATOM     15  CA  ARG    15     -10.653   2.139 -15.457  1.00 25.00           C
ATOM     16  CA  TYR    16     -11.010   1.851 -19.259  1.00 25.00           C
ATOM     17  CA  ASP    17     -14.688   0.859 -18.863  1.00 25.00           C
ATOM     18  CA  THR    18     -15.274   3.862 -16.559  1.00 25.00           C
ATOM     19  CA  GLN    19     -13.614   6.180 -19.116  1.00 25.00           C
ATOM     20  CA  ILE    20     -15.824   4.742 -21.892  1.00 25.00           C
ATOM     21  CA  HIS    21     -18.938   5.293 -19.732  1.00 25.00           C
ATOM     22  CA  ASN    22     -17.867   8.909 -19.066  1.00 25.00           C
ATOM     23  CA  GLN    23     -21.636   9.427 -18.418  1.00 25.00           C
ATOM     24  CA  LYS    24     -23.776   9.142 -15.247  1.00 25.00           C
ATOM     25  CA  ASP    25     -23.734   7.906 -11.709  1.00 25.00           C
ATOM     26  CA  ASN    26     -23.268   6.085  -8.353  1.00 25.00           C
ATOM     27  CA  ASP    27     -20.656   8.701  -7.466  1.00 25.00           C
ATOM     28  CA  ASN    28     -20.733  10.730  -4.249  1.00 25.00           C
ATOM     29  CA  GLU    29     -17.289   9.435  -3.545  1.00 25.00           C
ATOM     30  CA  VAL    30     -13.512   9.687  -3.489  1.00 25.00           C
ATOM     31  CA  PRO    31     -10.912   8.969  -6.209  1.00 25.00           C
ATOM     32  CA  VAL    32      -8.804   9.391  -9.369  1.00 25.00           C
ATOM     33  CA  HIS    33      -7.067  12.831  -9.111  1.00 25.00           C
ATOM     34  CA  GLN    34      -5.550  15.369 -11.517  1.00 25.00           C
ATOM     35  CA  VAL    35      -5.249  15.079 -15.301  1.00 25.00           C
ATOM     36  CA  SER    36      -8.222  16.263 -17.315  1.00 25.00           C
ATOM     37  CA  TYR    37      -8.728  13.329 -19.706  1.00 25.00           C
ATOM     38  CA  THR    38      -7.183  15.093 -22.734  1.00 25.00           C
ATOM     39  CA  ASN    39      -4.001  15.807 -20.725  1.00 25.00           C
ATOM     40  CA  LEU    40      -3.818  12.132 -19.663  1.00 25.00           C
ATOM     41  CA  ALA    41      -4.231  11.033 -23.308  1.00 25.00           C
ATOM     42  CA  GLU    42      -1.437  13.427 -24.372  1.00 25.00           C
ATOM     43  CA  MET    43       0.838  12.032 -21.625  1.00 25.00           C
ATOM     44  CA  VAL    44       0.088   8.460 -22.784  1.00 25.00           C
ATOM     45  CA  GLY    45       0.906   9.433 -26.396  1.00 25.00           C
ATOM     46  CA  GLU    46       4.205  11.005 -25.252  1.00 25.00           C
ATOM     47  CA  MET    47       5.075   7.824 -23.304  1.00 25.00           C
ATOM     48  CA  ASN    48       4.307   5.694 -26.393  1.00 25.00           C
ATOM     49  CA  LYS    49       6.537   7.953 -28.536  1.00 25.00           C
ATOM     50  CA  LEU    50       9.363   7.635 -25.971  1.00 25.00           C
ATOM     51  CA  LEU    51       8.984   3.825 -25.987  1.00 25.00           C
ATOM     52  CA  GLU    52       9.122   3.803 -29.814  1.00 25.00           C
ATOM     53  CA  PRO    53      12.286   5.958 -29.737  1.00 25.00           C
ATOM     54  CA  SER    54      13.944   5.520 -26.357  1.00 25.00           C
ATOM     55  CA  GLN    55      15.666   8.823 -25.507  1.00 25.00           C
ATOM     56  CA  VAL    56      12.986  10.799 -23.570  1.00 25.00           C
ATOM     57  CA  HIS    57      14.022   8.937 -20.376  1.00 25.00           C
ATOM     58  CA  LEU    58      11.547   8.000 -17.631  1.00 25.00           C
ATOM     59  CA  LYS    59      10.853   4.998 -15.335  1.00 25.00           C
ATOM     60  CA  PHE    60      10.068   2.693 -18.258  1.00 25.00           C
ATOM     61  CA  GLU    61      10.750  -0.527 -16.337  1.00 25.00           C
ATOM     62  CA  LEU    62      11.584  -3.871 -17.878  1.00 25.00           C
ATOM     63  CA  HIS    63      10.903  -7.545 -18.326  1.00 25.00           C
ATOM     64  CA  ASP    64      12.308  -9.607 -21.178  1.00 25.00           C
ATOM     65  CA  LYS    65       9.197 -11.709 -20.823  1.00 25.00           C
ATOM     66  CA  LEU    66       6.127 -10.111 -22.495  1.00 25.00           C
ATOM     67  CA  ASN    67       7.875 -11.401 -25.658  1.00 25.00           C
ATOM     68  CA  GLU    68       9.585  -8.147 -26.633  1.00 25.00           C
ATOM     69  CA  TYR    69       6.652  -5.810 -25.845  1.00 25.00           C
ATOM     70  CA  TYR    70       8.664  -4.709 -22.802  1.00 25.00           C
ATOM     71  CA  VAL    71      10.572  -1.508 -22.191  1.00 25.00           C
ATOM     72  CA  LYS    72      12.765   1.442 -23.346  1.00 25.00           C
ATOM     73  CA  VAL    73      15.569   2.791 -21.169  1.00 25.00           C
ATOM     74  CA  ILE    74      16.119   4.882 -18.035  1.00 25.00           C
ATOM     75  CA  GLU    75      15.684   3.559 -14.441  1.00 25.00           C
ATOM     76  CA  ASP    76      16.464   7.020 -13.051  1.00 25.00           C
ATOM     77  CA  SER    77      19.534   8.022 -15.029  1.00 25.00           C
ATOM     78  CA  THR    78      21.134   4.659 -14.324  1.00 25.00           C
ATOM     79  CA  ASN    79      21.298   3.819 -18.018  1.00 25.00           C
ATOM     80  CA  GLU    80      19.500   0.496 -17.887  1.00 25.00           C
ATOM     81  CA  VAL    81      18.384  -2.925 -19.151  1.00 25.00           C
ATOM     82  CA  ILE    82      15.947  -2.503 -22.006  1.00 25.00           C
ATOM     83  CA  ARG    83      14.304  -3.279 -25.403  1.00 25.00           C
ATOM     84  CA  GLU    84      12.772  -3.274 -28.870  1.00 25.00           C
ATOM     85  CA  ILE    85       9.902  -1.165 -27.430  1.00 25.00           C
ATOM     86  CA  PRO    86       7.083  -2.252 -29.807  1.00 25.00           C
ATOM     87  CA  PRO    87       4.394   0.377 -29.528  1.00 25.00           C
ATOM     88  CA  LYS    88       0.785   0.050 -28.288  1.00 25.00           C
ATOM     89  CA  ARG    89       1.660  -3.240 -26.534  1.00 25.00           C
ATOM     90  CA  TRP    90       4.689  -1.579 -24.878  1.00 25.00           C
ATOM     91  CA  LEU    91       2.485   1.324 -23.702  1.00 25.00           C
ATOM     92  CA  ASP    92      -0.054  -1.154 -22.261  1.00 25.00           C
ATOM     93  CA  PHE    93       2.755  -3.007 -20.433  1.00 25.00           C
ATOM     94  CA  TYR    94       4.043   0.305 -19.003  1.00 25.00           C
ATOM     95  CA  ALA    95       0.511   1.198 -17.823  1.00 25.00           C
ATOM     96  CA  ALA    96       0.174  -2.235 -16.157  1.00 25.00           C
ATOM     97  CA  MET    97       3.547  -1.745 -14.411  1.00 25.00           C
ATOM     98  CA  THR    98       2.436   1.707 -13.179  1.00 25.00           C
ATOM     99  CA  GLU    99      -0.827   0.208 -11.848  1.00 25.00           C
ATOM    100  CA  PHE   100       1.141  -2.533 -10.037  1.00 25.00           C
ATOM    101  CA  LEU   101       3.444   0.108  -8.492  1.00 25.00           C
ATOM    102  CA  GLY   102       0.399   2.122  -7.335  1.00 25.00           C
ATOM    103  CA  LEU   103      -1.123  -1.027  -5.777  1.00 25.00           C
ATOM    104  CA  PHE   104       2.175  -1.757  -3.970  1.00 25.00           C
ATOM    105  CA  VAL   105       5.954  -1.837  -4.596  1.00 25.00           C
ATOM    106  CA  ASP   106       5.441  -5.572  -4.702  1.00 25.00           C
ATOM    107  CA  GLU   107       4.061  -6.482  -1.296  1.00 25.00           C
ATOM    108  CA  LYS   108       1.850  -8.830  -3.363  1.00 25.00           C
ATOM    109  CA  LYS   109       4.424 -11.639  -2.969  1.00 25.00           C
ATOM    110  CA  LEU   110       2.507 -14.788  -1.965  1.00 25.00           C
ATOM    111  CA  GLU   111       3.860 -16.005  -5.341  1.00 25.00           C
ATOM    112  CA  HIS   112       0.298 -17.263  -5.974  1.00 25.00           C
ATOM    113  CA  HIS   113      -2.031 -19.322  -3.775  1.00 25.00           C
ATOM    114  CA  HIS   114      -3.593 -20.340  -7.109  1.00 25.00           C
ATOM    115  CA  HIS   115      -7.227 -20.808  -5.892  1.00 25.00           C
ATOM    116  CA  HIS   116      -9.301 -17.789  -6.976  1.00 25.00           C
ATOM    117  CA  HIS   117     -11.243 -15.164  -8.910  1.00 25.00           C
TER
END
