
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS599_1
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS599_1.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        68 - 109         4.96    18.32
  LCS_AVERAGE:     32.82

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        34 - 55          1.50    19.34
  LONGEST_CONTINUOUS_SEGMENT:    22        84 - 105         1.84    19.62
  LONGEST_CONTINUOUS_SEGMENT:    22        85 - 106         1.98    19.78
  LCS_AVERAGE:     13.68

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        35 - 52          0.79    19.64
  LCS_AVERAGE:      9.59

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      0    7   20     0    0    3    5   10   16   19   23   26   29   32   33   36   38   41   45   49   50   53   56 
LCS_GDT     N       2     N       2      5    7   20     0    3    5    5    6    7   14   21   26   27   32   33   36   40   43   45   49   50   53   56 
LCS_GDT     I       3     I       3      5    7   20     3    4    5    5    8   10   11   13   18   24   27   33   36   40   43   45   49   50   53   56 
LCS_GDT     E       4     E       4      5    7   20     3    4    5    5    6    7    9   10   13   15   17   18   20   21   27   31   37   47   52   55 
LCS_GDT     R       5     R       5      5    7   20     3    4    5    5    6    7    8   11   13   15   15   16   20   21   23   25   33   43   49   55 
LCS_GDT     L       6     L       6      5    7   20     3    4    5    5    9   10   11   13   14   20   25   28   36   40   43   44   49   50   53   56 
LCS_GDT     T       7     T       7      3   10   20     3    3    3    5    6    7   10   12   13   15   17   19   24   31   36   38   42   47   51   55 
LCS_GDT     T       8     T       8      3   10   20     3    3    3    4    9    9   10   12   13   15   17   19   24   31   36   42   45   50   52   55 
LCS_GDT     L       9     L       9      8   10   22     7    8    8    8    9   10   11   13   17   21   26   33   36   40   43   45   49   50   53   56 
LCS_GDT     Q      10     Q      10      8   10   22     7    8    8    8    9   10   11   13   17   21   26   33   36   40   43   45   49   50   53   56 
LCS_GDT     P      11     P      11      8   10   22     7    8    8    8    9   10   11   13   18   22   27   33   36   40   43   45   49   50   53   56 
LCS_GDT     V      12     V      12      8   10   22     7    8    8    8    9   10   11   13   14   20   25   28   36   40   43   45   49   50   53   56 
LCS_GDT     W      13     W      13      8   10   22     7    8    8    8    9   10   11   13   14   16   21   28   32   37   42   44   49   50   53   55 
LCS_GDT     D      14     D      14      8   10   22     7    8    8    8    9   10   11   13   14   16   23   28   32   40   43   45   49   50   53   56 
LCS_GDT     R      15     R      15      8   10   22     7    8    8    8    9   10   11   13   14   16   23   28   33   40   43   45   49   50   53   56 
LCS_GDT     Y      16     Y      16      8   10   22     6    8    9    9   10   10   10   13   14   15   17   19   24   27   30   34   39   47   50   55 
LCS_GDT     D      17     D      17      8   10   22     6    8    9    9   10   10   11   13   18   26   30   33   36   40   43   45   49   50   53   56 
LCS_GDT     T      18     T      18      8    9   22     6    8    9    9   10   10   11   20   25   28   32   33   36   40   43   45   49   50   53   56 
LCS_GDT     Q      19     Q      19      8    9   22     6    8    9    9   10   10   11   13   18   26   30   33   36   40   43   45   49   50   53   56 
LCS_GDT     I      20     I      20      8    9   37     6    8    9    9   11   15   16   25   27   29   31   33   36   40   43   45   49   50   53   56 
LCS_GDT     H      21     H      21      8    9   37     6    8    9   14   18   22   23   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     N      22     N      22      8    9   37     4    8    9    9   10   10   21   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     Q      23     Q      23      8    9   37     4    8    9   14   18   22   23   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     K      24     K      24      3    4   37     3    3    3   10   11   12   12   17   22   27   30   34   36   38   41   44   47   50   53   56 
LCS_GDT     D      25     D      25      3    4   37     3    3    9    9   11   12   12   17   23   24   26   29   33   38   40   42   45   49   53   56 
LCS_GDT     N      26     N      26      3    4   37     3    3    3   10   11   11   18   21   26   28   30   34   36   38   43   47   50   52   53   57 
LCS_GDT     D      27     D      27      3    4   37     3    3    9   12   13   14   18   23   26   29   32   36   38   41   45   49   52   55   59   62 
LCS_GDT     N      28     N      28      3    4   37     3    3    9   12   13   14   18   23   26   29   32   36   39   46   47   49   52   55   59   62 
LCS_GDT     E      29     E      29      3    4   37     3    3    3    5    7    9   15   22   26   29   32   33   38   41   45   48   52   55   59   62 
LCS_GDT     V      30     V      30      3    4   37     3    3    3    4    6    6    9   13   19   24   28   33   36   40   43   45   49   55   59   62 
LCS_GDT     P      31     P      31      3    3   37     3    3    5   13   16   19   22   26   28   29   32   34   36   40   43   45   49   55   58   62 
LCS_GDT     V      32     V      32      3    4   37     3    3    3    4   12   16   20   24   26   27   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     H      33     H      33      3    4   37     3    7   10   13   16   20   22   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     Q      34     Q      34      3   22   37     3    8   14   16   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     V      35     V      35     18   22   37     6   16   18   19   21   23   24   24   26   28   31   33   36   39   41   45   49   50   53   56 
LCS_GDT     S      36     S      36     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     Y      37     Y      37     18   22   37     5   16   18   19   21   23   24   25   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     T      38     T      38     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     N      39     N      39     18   22   37     5   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     L      40     L      40     18   22   37     5   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     A      41     A      41     18   22   37     5   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     E      42     E      42     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     M      43     M      43     18   22   37     5   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     V      44     V      44     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     G      45     G      45     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   36   40   43   45   49   50   53   56 
LCS_GDT     E      46     E      46     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   37   40   43   46   49   50   53   56 
LCS_GDT     M      47     M      47     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   37   40   43   47   50   55   59   62 
LCS_GDT     N      48     N      48     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   37   40   43   47   49   52   58   62 
LCS_GDT     K      49     K      49     18   22   37     6   16   18   19   21   23   24   26   28   29   32   34   37   40   43   47   49   51   56   59 
LCS_GDT     L      50     L      50     18   22   37     6   16   18   19   21   23   24   26   28   29   32   36   40   42   46   50   52   55   59   62 
LCS_GDT     L      51     L      51     18   22   37     6   16   18   19   21   23   24   27   34   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     E      52     E      52     18   22   37     6   14   18   19   21   23   24   26   28   31   39   42   46   49   50   51   52   55   59   62 
LCS_GDT     P      53     P      53     14   22   37     4    7   11   16   21   23   24   26   28   29   32   34   37   39   43   47   50   55   59   62 
LCS_GDT     S      54     S      54     14   22   37     4    7   11   16   21   23   24   26   28   29   32   34   39   47   50   51   52   55   59   62 
LCS_GDT     Q      55     Q      55      5   22   37     3    4    5   19   21   23   24   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     V      56     V      56      9   11   37     4    8    9   12   17   22   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     H      57     H      57      9   11   34     6    8    9   11   17   22   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     L      58     L      58      9   11   33     6    8    9   12   17   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     K      59     K      59      9   11   33     6    8    9   10   11   19   24   30   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     F      60     F      60      9   11   33     6    8    9   10   11   14   21   26   31   35   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     E      61     E      61      9   11   33     6    8    9   10   11   12   18   24   30   34   36   41   46   49   50   51   52   55   59   62 
LCS_GDT     L      62     L      62      9   11   33     6    8    9   10   11   12   18   24   28   31   36   38   41   46   50   51   52   55   59   62 
LCS_GDT     H      63     H      63      9   11   33     3    8    9   10   11   12   17   23   26   29   32   36   39   42   45   49   52   55   59   62 
LCS_GDT     D      64     D      64      9   11   33     3    5    9   10   11   12   17   23   26   29   32   33   38   42   45   48   52   55   59   62 
LCS_GDT     K      65     K      65      7   11   33     3    5    9   10   11   12   17   21   25   29   32   33   38   41   43   47   50   55   59   62 
LCS_GDT     L      66     L      66      4   14   33     4    7    9    9   13   14   18   23   26   29   32   33   37   41   43   47   50   55   59   62 
LCS_GDT     N      67     N      67      8   14   33     4    7   11   12   13   14   15   22   25   28   32   33   37   40   43   47   50   53   58   62 
LCS_GDT     E      68     E      68     10   14   42     4    7   11   12   13   14   18   23   26   29   32   34   38   41   45   48   52   55   59   62 
LCS_GDT     Y      69     Y      69     10   14   42     4    8   11   12   13   14   18   23   26   29   32   35   38   42   45   49   52   55   59   62 
LCS_GDT     Y      70     Y      70     10   14   42     5    9   11   12   13   14   18   24   28   34   36   42   45   49   50   51   52   55   59   62 
LCS_GDT     V      71     V      71     10   14   42     5    9   11   12   13   14   18   24   30   34   41   44   46   49   50   51   52   55   59   62 
LCS_GDT     K      72     K      72     10   14   42     5    9   11   12   13   14   21   26   32   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     V      73     V      73     10   14   42     5    9   11   12   18   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     I      74     I      74     10   14   42     5    9   11   12   18   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     E      75     E      75     10   14   42     5    9   11   12   17   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     D      76     D      76     10   14   42     5    9   11   12   17   22   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     S      77     S      77     10   14   42     4    9   11   12   16   21   25   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     T      78     T      78     10   14   42     5    9   10   12   14   21   25   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     N      79     N      79     10   14   42     4    7   10   12   13   19   23   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     E      80     E      80      9   14   42     4    7    9   12   13   17   23   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     V      81     V      81      9   14   42     4    7    9   12   13   14   25   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     I      82     I      82      4   13   42     3    8   11   12   14   19   23   26   34   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     R      83     R      83      4   12   42     3    3    4    6    7   13   15   16   27   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     E      84     E      84      9   22   42     7    7   10   12   17   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     I      85     I      85      9   22   42     7    7   10   14   19   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     P      86     P      86      9   22   42     7    7   12   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     P      87     P      87     16   22   42     7    9   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   60 
LCS_GDT     K      88     K      88     16   22   42     7    7   10   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     R      89     R      89     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     W      90     W      90     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     L      91     L      91     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     D      92     D      92     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     F      93     F      93     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     Y      94     Y      94     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     A      95     A      95     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     A      96     A      96     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     M      97     M      97     16   22   42     5   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     T      98     T      98     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     E      99     E      99     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     F     100     F     100     16   22   42    11   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     L     101     L     101     16   22   42     5   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     G     102     G     102     16   22   42     5   14   15   17   20   23   26   31   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     L     103     L     103     16   22   42     6   14   15   17   20   22   25   29   35   39   41   44   45   49   50   51   52   54   59   60 
LCS_GDT     F     104     F     104     16   22   42     5    9   15   16   20   22   24   27   34   39   41   44   46   49   50   51   52   54   59   61 
LCS_GDT     V     105     V     105     13   22   42     5    9   14   16   20   22   25   28   35   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     D     106     D     106      6   22   42     4    4    6   10   17   21   24   28   34   39   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     E     107     E     107      6   11   42     4    4    6    6    9   14   21   26   31   36   42   44   46   49   50   51   52   55   59   62 
LCS_GDT     K     108     K     108      6   10   42     4    4    6    7   11   14   20   24   30   34   39   42   45   49   50   51   52   55   59   62 
LCS_GDT     K     109     K     109      6   10   42     4    4    7   13   18   21   24   26   31   38   42   44   46   49   50   51   52   55   59   62 
LCS_AVERAGE  LCS_A:  18.69  (   9.59   13.68   32.82 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     16     18     19     21     23     26     31     35     39     42     44     46     49     50     51     52     55     59     62 
GDT PERCENT_CA  10.09  14.68  16.51  17.43  19.27  21.10  23.85  28.44  32.11  35.78  38.53  40.37  42.20  44.95  45.87  46.79  47.71  50.46  54.13  56.88
GDT RMS_LOCAL    0.29   0.65   0.79   1.13   1.40   1.61   2.32   2.74   3.06   3.47   3.79   3.93   4.17   4.44   4.56   4.65   4.79   5.67   5.88   6.44
GDT RMS_ALL_CA  19.92  19.75  19.64  19.60  19.37  19.32  19.17  18.96  18.99  18.89  18.72  18.69  18.66  18.51  18.44  18.46  18.50  17.60  17.80  17.40

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         20.422
LGA    N       2      N       2         18.060
LGA    I       3      I       3         16.352
LGA    E       4      E       4         18.624
LGA    R       5      R       5         19.600
LGA    L       6      L       6         21.105
LGA    T       7      T       7         25.504
LGA    T       8      T       8         24.874
LGA    L       9      L       9         24.772
LGA    Q      10      Q      10         30.380
LGA    P      11      P      11         27.943
LGA    V      12      V      12         26.184
LGA    W      13      W      13         32.617
LGA    D      14      D      14         34.990
LGA    R      15      R      15         31.096
LGA    Y      16      Y      16         33.956
LGA    D      17      D      17         35.835
LGA    T      18      T      18         35.219
LGA    Q      19      Q      19         31.734
LGA    I      20      I      20         31.300
LGA    H      21      H      21         34.087
LGA    N      22      N      22         32.273
LGA    Q      23      Q      23         27.882
LGA    K      24      K      24         24.715
LGA    D      25      D      25         25.924
LGA    N      26      N      26         20.254
LGA    D      27      D      27         14.717
LGA    N      28      N      28         12.500
LGA    E      29      E      29         15.984
LGA    V      30      V      30         16.918
LGA    P      31      P      31         17.246
LGA    V      32      V      32         22.774
LGA    H      33      H      33         28.635
LGA    Q      34      Q      34         29.723
LGA    V      35      V      35         29.219
LGA    S      36      S      36         36.243
LGA    Y      37      Y      37         38.751
LGA    T      38      T      38         38.609
LGA    N      39      N      39         31.662
LGA    L      40      L      40         29.054
LGA    A      41      A      41         31.450
LGA    E      42      E      42         29.105
LGA    M      43      M      43         21.794
LGA    V      44      V      44         22.036
LGA    G      45      G      45         24.400
LGA    E      46      E      46         20.100
LGA    M      47      M      47         13.870
LGA    N      48      N      48         15.725
LGA    K      49      K      49         16.735
LGA    L      50      L      50         11.161
LGA    L      51      L      51          6.375
LGA    E      52      E      52          9.718
LGA    P      53      P      53         11.306
LGA    S      54      S      54          7.275
LGA    Q      55      Q      55          4.214
LGA    V      56      V      56          2.488
LGA    H      57      H      57          2.023
LGA    L      58      L      58          3.466
LGA    K      59      K      59          4.667
LGA    F      60      F      60          7.252
LGA    E      61      E      61          9.651
LGA    L      62      L      62         12.503
LGA    H      63      H      63         15.986
LGA    D      64      D      64         19.749
LGA    K      65      K      65         22.734
LGA    L      66      L      66         23.387
LGA    N      67      N      67         23.322
LGA    E      68      E      68         18.287
LGA    Y      69      Y      69         15.684
LGA    Y      70      Y      70         10.828
LGA    V      71      V      71          8.210
LGA    K      72      K      72          6.664
LGA    V      73      V      73          3.469
LGA    I      74      I      74          2.284
LGA    E      75      E      75          0.683
LGA    D      76      D      76          1.212
LGA    S      77      S      77          3.540
LGA    T      78      T      78          3.477
LGA    N      79      N      79          3.991
LGA    E      80      E      80          3.679
LGA    V      81      V      81          3.855
LGA    I      82      I      82          5.894
LGA    R      83      R      83          5.759
LGA    E      84      E      84          2.586
LGA    I      85      I      85          2.646
LGA    P      86      P      86          2.117
LGA    P      87      P      87          2.823
LGA    K      88      K      88          3.094
LGA    R      89      R      89          3.156
LGA    W      90      W      90          3.660
LGA    L      91      L      91          3.384
LGA    D      92      D      92          1.600
LGA    F      93      F      93          1.520
LGA    Y      94      Y      94          1.943
LGA    A      95      A      95          1.192
LGA    A      96      A      96          1.491
LGA    M      97      M      97          1.805
LGA    T      98      T      98          1.376
LGA    E      99      E      99          2.502
LGA    F     100      F     100          3.652
LGA    L     101      L     101          3.725
LGA    G     102      G     102          2.664
LGA    L     103      L     103          5.057
LGA    F     104      F     104          7.144
LGA    V     105      V     105          6.412
LGA    D     106      D     106          7.560
LGA    E     107      E     107          8.268
LGA    K     108      K     108         11.226
LGA    K     109      K     109          9.575

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     31    2.74    26.835    24.122     1.090

LGA_LOCAL      RMSD =  2.744  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.066  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 16.462  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.320266 * X  +   0.295989 * Y  +  -0.899900 * Z  +  -1.019236
  Y_new =   0.947222 * X  +  -0.114218 * Y  +   0.299540 * Z  +   2.998831
  Z_new =  -0.014125 * X  +  -0.948338 * Y  +  -0.316948 * Z  + -12.721765 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.893339    1.248253  [ DEG:  -108.4803     71.5197 ]
  Theta =   0.014125    3.127468  [ DEG:     0.8093    179.1907 ]
  Phi   =   1.244752   -1.896840  [ DEG:    71.3191   -108.6809 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS599_1                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS599_1.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   31   2.74  24.122    16.46
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS599_1
PFRMAT TS                                                                       
TARGET T0350                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       1.167  13.667 -17.479  1.00  0.00              
ATOM      2  CA  ASN     2       2.573   9.707 -17.652  1.00  0.00              
ATOM      3  CA  ILE     3      -1.281  10.483 -17.320  1.00  0.00              
ATOM      4  CA  GLU     4      -3.653   7.991 -16.022  1.00  0.00              
ATOM      5  CA  ARG     5      -4.269   9.749 -12.688  1.00  0.00              
ATOM      6  CA  LEU     6      -5.419  13.061 -14.174  1.00  0.00              
ATOM      7  CA  THR     7      -7.959  11.486 -16.583  1.00  0.00              
ATOM      8  CA  THR     8      -9.494   9.364 -13.806  1.00  0.00              
ATOM      9  CA  LEU     9      -9.933  12.235 -11.332  1.00  0.00              
ATOM     10  CA  GLN    10     -11.748  14.464 -13.840  1.00  0.00              
ATOM     11  CA  PRO    11     -14.308  11.703 -14.525  1.00  0.00              
ATOM     12  CA  VAL    12     -14.773  11.128 -10.774  1.00  0.00              
ATOM     13  CA  TRP    13     -15.286  14.867 -10.010  1.00  0.00              
ATOM     14  CA  ASP    14     -18.044  14.940 -12.564  1.00  0.00              
ATOM     15  CA  ARG    15     -19.751  11.802 -11.255  1.00  0.00              
ATOM     16  CA  TYR    16     -20.438  12.843  -7.724  1.00  0.00              
ATOM     17  CA  ASP    17     -17.748  11.778  -5.359  1.00  0.00              
ATOM     18  CA  THR    18     -19.856   9.200  -3.418  1.00  0.00              
ATOM     19  CA  GLN    19     -20.873   7.426  -6.651  1.00  0.00              
ATOM     20  CA  ILE    20     -17.232   7.252  -7.844  1.00  0.00              
ATOM     21  CA  HIS    21     -15.962   5.826  -4.578  1.00  0.00              
ATOM     22  CA  ASN    22     -18.597   3.119  -4.666  1.00  0.00              
ATOM     23  CA  GLN    23     -17.677   2.323  -8.303  1.00  0.00              
ATOM     24  CA  LYS    24     -13.972   2.060  -7.474  1.00  0.00              
ATOM     25  CA  ASP    25     -14.726  -0.252  -4.506  1.00  0.00              
ATOM     26  CA  ASN    26     -16.900  -2.625  -6.447  1.00  0.00              
ATOM     27  CA  ASP    27     -14.625  -2.641  -9.440  1.00  0.00              
ATOM     28  CA  ASN    28     -11.960  -3.809  -7.219  1.00  0.00              
ATOM     29  CA  GLU    29     -13.459  -6.347  -5.052  1.00  0.00              
ATOM     30  CA  VAL    30     -14.944  -8.863  -7.395  1.00  0.00              
ATOM     31  CA  PRO    31     -11.787  -8.414  -9.409  1.00  0.00              
ATOM     32  CA  VAL    32      -9.807  -9.536  -6.321  1.00  0.00              
ATOM     33  CA  HIS    33     -12.064 -12.498  -5.647  1.00  0.00              
ATOM     34  CA  GLN    34     -12.051 -13.685  -9.307  1.00  0.00              
ATOM     35  CA  VAL    35      -8.208 -13.520  -9.353  1.00  0.00              
ATOM     36  CA  SER    36      -7.495 -15.260  -6.041  1.00  0.00              
ATOM     37  CA  TYR    37      -6.254 -13.390  -2.996  1.00  0.00              
ATOM     38  CA  THR    38      -2.769 -14.820  -3.175  1.00  0.00              
ATOM     39  CA  ASN    39      -2.480 -13.900  -6.879  1.00  0.00              
ATOM     40  CA  LEU    40      -3.689 -10.350  -6.209  1.00  0.00              
ATOM     41  CA  ALA    41      -1.239  -9.863  -3.420  1.00  0.00              
ATOM     42  CA  GLU    42       1.558 -11.115  -5.720  1.00  0.00              
ATOM     43  CA  MET    43       0.381  -8.693  -8.445  1.00  0.00              
ATOM     44  CA  VAL    44       0.534  -5.751  -5.957  1.00  0.00              
ATOM     45  CA  GLY    45       4.078  -6.708  -4.850  1.00  0.00              
ATOM     46  CA  GLU    46       5.140  -6.887  -8.542  1.00  0.00              
ATOM     47  CA  MET    47       3.538  -3.476  -9.090  1.00  0.00              
ATOM     48  CA  ASN    48       5.381  -1.984  -6.140  1.00  0.00              
ATOM     49  CA  LYS    49       8.599  -3.288  -7.739  1.00  0.00              
ATOM     50  CA  LEU    50       7.636  -1.742 -11.077  1.00  0.00              
ATOM     51  CA  LEU    51       6.965   1.638  -9.406  1.00  0.00              
ATOM     52  CA  GLU    52      10.337   1.553  -7.676  1.00  0.00              
ATOM     53  CA  PRO    53      11.993   0.836 -11.042  1.00  0.00              
ATOM     54  CA  SER    54      10.055   3.732 -12.663  1.00  0.00              
ATOM     55  CA  GLN    55      11.056   6.090  -9.889  1.00  0.00              
ATOM     56  CA  VAL    56      14.720   5.344 -10.855  1.00  0.00              
ATOM     57  CA  HIS    57      14.395   7.051 -14.204  1.00  0.00              
ATOM     58  CA  LEU    58      10.851   7.579 -15.474  1.00  0.00              
ATOM     59  CA  LYS    59      10.021   9.718 -18.437  1.00  0.00              
ATOM     60  CA  PHE    60       6.393  10.782 -18.960  1.00  0.00              
ATOM     61  CA  GLU    61       5.037  11.695 -22.346  1.00  0.00              
ATOM     62  CA  LEU    62       1.568  13.103 -22.654  1.00  0.00              
ATOM     63  CA  HIS    63      -0.116  13.200 -25.956  1.00  0.00              
ATOM     64  CA  ASP    64      -2.497  16.076 -26.184  1.00  0.00              
ATOM     65  CA  LYS    65      -4.431  14.910 -29.170  1.00  0.00              
ATOM     66  CA  LEU    66      -5.161  11.435 -28.002  1.00  0.00              
ATOM     67  CA  ASN    67      -5.374  12.265 -24.312  1.00  0.00              
ATOM     68  CA  GLU    68      -2.963   9.398 -23.824  1.00  0.00              
ATOM     69  CA  TYR    69      -0.172   9.007 -21.378  1.00  0.00              
ATOM     70  CA  TYR    70       3.060   7.449 -22.527  1.00  0.00              
ATOM     71  CA  VAL    71       5.567   6.283 -20.009  1.00  0.00              
ATOM     72  CA  LYS    72       9.141   5.844 -21.020  1.00  0.00              
ATOM     73  CA  VAL    73      11.450   3.881 -18.827  1.00  0.00              
ATOM     74  CA  ILE    74      15.087   4.662 -19.004  1.00  0.00              
ATOM     75  CA  GLU    75      17.703   2.721 -16.889  1.00  0.00              
ATOM     76  CA  ASP    76      19.890   5.619 -15.862  1.00  0.00              
ATOM     77  CA  SER    77      23.221   4.121 -15.758  1.00  0.00              
ATOM     78  CA  THR    78      23.208   1.961 -18.838  1.00  0.00              
ATOM     79  CA  ASN    79      20.172   3.129 -20.859  1.00  0.00              
ATOM     80  CA  GLU    80      19.033  -0.426 -21.217  1.00  0.00              
ATOM     81  CA  VAL    81      15.351  -0.787 -20.557  1.00  0.00              
ATOM     82  CA  ILE    82      14.359   2.068 -22.839  1.00  0.00              
ATOM     83  CA  ARG    83      16.485   0.673 -25.688  1.00  0.00              
ATOM     84  CA  GLU    84      15.010  -2.805 -25.399  1.00  0.00              
ATOM     85  CA  ILE    85      11.467  -1.920 -25.417  1.00  0.00              
ATOM     86  CA  PRO    86       9.208  -2.172 -28.494  1.00  0.00              
ATOM     87  CA  PRO    87       6.749   0.705 -28.152  1.00  0.00              
ATOM     88  CA  LYS    88       3.748  -1.625 -27.745  1.00  0.00              
ATOM     89  CA  ARG    89       5.253  -3.465 -24.834  1.00  0.00              
ATOM     90  CA  TRP    90       6.107  -0.247 -22.976  1.00  0.00              
ATOM     91  CA  LEU    91       2.501   1.006 -23.349  1.00  0.00              
ATOM     92  CA  ASP    92       1.164  -2.341 -22.057  1.00  0.00              
ATOM     93  CA  PHE    93       3.452  -2.306 -19.034  1.00  0.00              
ATOM     94  CA  TYR    94       2.434   1.317 -18.269  1.00  0.00              
ATOM     95  CA  ALA    95      -1.259   0.375 -18.517  1.00  0.00              
ATOM     96  CA  ALA    96      -0.664  -2.561 -16.167  1.00  0.00              
ATOM     97  CA  MET    97       1.127  -0.371 -13.684  1.00  0.00              
ATOM     98  CA  THR    98      -1.567   2.245 -13.597  1.00  0.00              
ATOM     99  CA  GLU    99      -4.262  -0.268 -12.942  1.00  0.00              
ATOM    100  CA  PHE   100      -2.344  -1.895 -10.130  1.00  0.00              
ATOM    101  CA  LEU   101      -0.808   0.849  -7.977  1.00  0.00              
ATOM    102  CA  GLY   102      -3.964   2.843  -8.222  1.00  0.00              
ATOM    103  CA  LEU   103      -6.189  -0.061  -7.411  1.00  0.00              
ATOM    104  CA  PHE   104      -4.186  -1.226  -4.389  1.00  0.00              
ATOM    105  CA  VAL   105      -3.333   2.139  -2.952  1.00  0.00              
ATOM    106  CA  ASP   106      -2.498   2.900   0.616  1.00  0.00              
ATOM    107  CA  GLU   107      -4.352   6.085   1.364  1.00  0.00              
ATOM    108  CA  LYS   108      -1.127   8.003   2.120  1.00  0.00              
ATOM    109  CA  LYS   109       0.281   7.284  -1.363  1.00  0.00              
ATOM    110  CA  LEU   110      -2.983   8.259  -3.113  1.00  0.00              
ATOM    111  CA  GLU   111      -3.200  11.481  -1.079  1.00  0.00              
ATOM    112  CA  HIS   112       0.355  12.414  -1.834  1.00  0.00              
ATOM    113  CA  HIS   113      -0.008  11.852  -5.605  1.00  0.00              
ATOM    114  CA  HIS   114      -2.802  14.382  -5.950  1.00  0.00              
ATOM    115  CA  HIS   115      -5.876  12.513  -6.612  1.00  0.00              
ATOM    116  CA  HIS   116      -9.567  11.017  -5.261  1.00  0.00              
ATOM    117  CA  HIS   117     -11.371  14.794  -5.272  1.00  0.00              
TER                                                                             
END
