
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS599_2
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS599_2.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        69 - 109         4.81    18.84
  LCS_AVERAGE:     32.03

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        34 - 55          1.41    19.30
  LONGEST_CONTINUOUS_SEGMENT:    22        84 - 105         1.84    20.05
  LCS_AVERAGE:     13.54

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        35 - 53          0.96    19.60
  LCS_AVERAGE:      9.68

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    6   21     0    3    4    5    6   15   19   24   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     N       2     N       2      3    6   21     0    3    4    8   10   12   12   15   15   16   19   30   34   41   45   46   49   51   55   57 
LCS_GDT     I       3     I       3      4    6   21     4    4    4    5    6    9   12   15   17   23   26   31   34   41   45   46   49   51   55   57 
LCS_GDT     E       4     E       4      4    6   21     4    4    4    5    6    6   10   11   14   16   18   20   22   30   30   43   46   51   55   56 
LCS_GDT     R       5     R       5      4    6   21     4    4    4    5    6    6    7   13   14   15   15   20   20   21   24   26   29   48   55   56 
LCS_GDT     L       6     L       6      4    6   21     4    4    4    5   10   12   12   15   15   21   26   29   34   39   41   46   49   51   55   57 
LCS_GDT     T       7     T       7      3   10   21     3    3    3    5    5    5   10   13   14   17   18   24   29   34   36   41   45   48   55   56 
LCS_GDT     T       8     T       8      3   10   22     3    3    3    4    9    9   10   12   14   17   18   24   29   34   37   43   47   51   55   56 
LCS_GDT     L       9     L       9      8   10   24     7    8    8    8   10   12   12   15   18   23   26   31   34   41   45   46   49   51   55   57 
LCS_GDT     Q      10     Q      10      8   10   24     7    8    8    8   10   12   12   15   18   23   26   31   34   41   45   46   49   51   55   57 
LCS_GDT     P      11     P      11      8   10   24     7    8    8    8   10   12   12   15   18   23   27   31   34   41   45   46   49   51   55   57 
LCS_GDT     V      12     V      12      8   10   24     7    8    8    8   10   12   12   15   17   21   26   30   34   39   45   46   49   51   55   57 
LCS_GDT     W      13     W      13      8   10   24     7    8    8    8   10   12   12   15   15   17   23   29   31   38   41   46   49   51   55   57 
LCS_GDT     D      14     D      14      8   10   24     7    8    8    8   10   12   12   15   15   18   24   29   34   39   45   46   49   51   55   57 
LCS_GDT     R      15     R      15      8   10   24     7    8    8    8   10   12   12   15   15   18   24   29   34   39   45   46   49   51   55   57 
LCS_GDT     Y      16     Y      16      8   10   24     6    8    9    9   10   12   12   15   15   16   18   23   27   30   30   36   45   48   55   56 
LCS_GDT     D      17     D      17      8   10   24     6    7    9    9   10   10   12   15   20   26   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     T      18     T      18      8    9   24     6    7    9    9   10   10   15   21   23   26   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     Q      19     Q      19      8    9   24     6    7    9    9   10   12   12   15   20   26   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     I      20     I      20      8    9   24     6    7    9    9   10   10   22   24   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     H      21     H      21      8    9   35     6    7    9   12   18   20   22   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     N      22     N      22      8    9   35     4    7    9    9   10   10   22   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     Q      23     Q      23      8    9   35     4    7    9   12   18   20   22   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     K      24     K      24      3    4   35     3    3    4    4   11   11   12   13   18   24   27   32   34   38   40   43   47   51   53   57 
LCS_GDT     D      25     D      25      3    4   35     3    3    3   10   10   11   12   17   19   23   27   28   34   37   39   42   45   49   53   57 
LCS_GDT     N      26     N      26      3    4   35     3    3    3    8    9   11   11   19   21   24   28   32   34   38   41   45   49   51   55   57 
LCS_GDT     D      27     D      27      3    4   35     3    3    8    9   12   14   16   18   24   26   28   32   35   38   40   46   50   51   56   60 
LCS_GDT     N      28     N      28      3    4   35     3    6    8    9   12   14   18   21   24   26   30   32   35   37   40   46   50   53   57   60 
LCS_GDT     E      29     E      29      3    4   35     3    3    3    4    8    9   12   15   22   25   30   32   35   37   41   46   50   53   57   60 
LCS_GDT     V      30     V      30      3    4   35     3    3    3    4    5    7   10   17   22   26   30   32   36   41   45   46   50   51   57   60 
LCS_GDT     P      31     P      31      3    3   35     3    3    5   12   18   20   22   25   26   30   32   33   36   41   45   46   49   51   57   60 
LCS_GDT     V      32     V      32      3    4   35     3    3    3    8   14   17   22   25   26   27   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     H      33     H      33      3    4   35     3    3    8   12   18   20   22   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     Q      34     Q      34      3   22   35     3   10   14   17   21   23   24   24   26   30   31   33   36   41   45   46   49   51   55   57 
LCS_GDT     V      35     V      35     19   22   35     8   17   18   20   21   23   24   24   25   26   30   33   36   41   45   45   49   51   55   57 
LCS_GDT     S      36     S      36     19   22   35     8   17   18   20   21   23   24   24   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     Y      37     Y      37     19   22   35     8   17   18   20   21   23   24   24   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     T      38     T      38     19   22   35     8   17   18   20   21   23   24   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     N      39     N      39     19   22   35     5   17   18   20   21   23   24   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     L      40     L      40     19   22   35     4   17   18   20   21   23   24   24   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     A      41     A      41     19   22   35     4   17   18   20   21   23   24   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     E      42     E      42     19   22   35     8   17   18   20   21   23   24   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     M      43     M      43     19   22   35     9   17   18   20   21   23   24   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     V      44     V      44     19   22   35     9   17   18   20   21   23   24   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     G      45     G      45     19   22   35     9   17   18   20   21   23   24   25   26   30   32   33   36   41   45   46   49   51   55   57 
LCS_GDT     E      46     E      46     19   22   35     9   17   18   20   21   23   24   25   26   30   32   34   37   41   45   46   49   51   55   57 
LCS_GDT     M      47     M      47     19   22   35     9   17   18   20   21   23   24   25   26   30   32   34   37   41   45   46   49   53   57   60 
LCS_GDT     N      48     N      48     19   22   35     9   17   18   20   21   23   24   25   26   30   32   34   37   41   45   46   49   51   57   60 
LCS_GDT     K      49     K      49     19   22   35     9   17   18   20   21   23   24   25   26   30   32   34   37   41   45   46   49   51   55   58 
LCS_GDT     L      50     L      50     19   22   35     9   17   18   20   21   23   24   25   26   30   32   34   38   41   45   49   51   53   57   60 
LCS_GDT     L      51     L      51     19   22   35     6   17   18   20   21   23   24   26   32   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     E      52     E      52     19   22   35     9   17   18   20   21   23   24   25   27   30   39   42   44   48   48   50   51   53   57   60 
LCS_GDT     P      53     P      53     19   22   35     4    7   14   20   21   23   24   25   26   30   32   34   37   41   45   46   50   53   57   60 
LCS_GDT     S      54     S      54     14   22   35     4    6   13   20   21   23   24   25   26   30   32   33   36   41   45   50   51   53   57   60 
LCS_GDT     Q      55     Q      55      5   22   35     3    4    5   17   21   23   24   32   33   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     V      56     V      56      9   11   34     4    7    8   13   16   21   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     H      57     H      57      9   11   34     5    7    8   10   16   21   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     L      58     L      58      9   11   34     5    7    8   14   19   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     K      59     K      59      9   11   34     5    7    8   10   11   22   25   30   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     F      60     F      60      9   11   34     5    7    8   10   11   13   19   22   30   33   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     E      61     E      61      9   11   34     4    7    8   10   11   11   19   22   26   30   34   38   45   48   48   50   51   53   57   60 
LCS_GDT     L      62     L      62      9   11   34     5    7    8   10   11   11   19   22   26   28   31   35   38   43   48   50   51   53   57   60 
LCS_GDT     H      63     H      63      9   11   34     3    6    8   10   11   11   18   22   26   28   31   34   37   40   43   46   50   53   57   60 
LCS_GDT     D      64     D      64      9   11   34     3    5    9   10   11   11   18   22   26   28   31   34   37   40   42   46   50   52   57   60 
LCS_GDT     K      65     K      65      7   11   34     3    5    8    9   11   11   18   22   26   28   31   34   37   40   42   46   50   51   57   60 
LCS_GDT     L      66     L      66      5   13   34     3    6    8    9   13   14   19   22   26   28   31   34   37   40   42   46   50   51   57   60 
LCS_GDT     N      67     N      67      8   13   34     4    6   10   11   13   14   15   22   23   28   31   34   37   40   42   46   50   51   57   60 
LCS_GDT     E      68     E      68      8   14   34     4    6   11   11   13   14   19   22   26   28   31   34   37   40   42   46   50   53   57   60 
LCS_GDT     Y      69     Y      69      9   14   41     4    6   11   11   13   14   19   22   26   28   31   34   37   40   42   46   50   53   57   60 
LCS_GDT     Y      70     Y      70     10   14   41     4    8   11   12   13   14   19   22   26   30   34   38   44   48   48   50   51   53   57   60 
LCS_GDT     V      71     V      71     10   14   41     4    8   11   12   13   14   19   22   26   32   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     K      72     K      72     10   14   41     4    8   11   12   13   14   19   22   31   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     V      73     V      73     10   14   41     5    8   11   14   19   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     I      74     I      74     10   14   41     4    8   11   14   19   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     E      75     E      75     10   14   41     5    8   11   13   17   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     D      76     D      76     10   14   41     4    8   11   13   16   21   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     S      77     S      77     10   14   41     5    8   11   12   16   21   24   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     T      78     T      78     10   14   41     4    8   10   12   14   21   24   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     N      79     N      79     10   14   41     4    8   10   12   13   19   23   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     E      80     E      80      9   14   41     5    7   10   12   13   19   23   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     V      81     V      81      9   14   41     5    8   10   12   12   19   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     I      82     I      82      4   13   41     3    7   11   11   13   13   19   22   30   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     R      83     R      83      4   12   41     3    4    4    6    6   12   15   18   24   34   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     E      84     E      84      9   22   41     7    7   10   13   16   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     I      85     I      85      9   22   41     7    7   10   14   19   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     P      86     P      86      9   22   41     7    7   11   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   58 
LCS_GDT     P      87     P      87     16   22   41     7    9   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   58 
LCS_GDT     K      88     K      88     16   22   41     7    7   10   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   58 
LCS_GDT     R      89     R      89     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     W      90     W      90     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     L      91     L      91     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     D      92     D      92     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     F      93     F      93     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     Y      94     Y      94     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     A      95     A      95     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     A      96     A      96     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     M      97     M      97     16   22   41     6   15   16   17   20   23   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     T      98     T      98     16   22   41     6   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     E      99     E      99     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     F     100     F     100     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     L     101     L     101     16   22   41    11   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     G     102     G     102     16   22   41     4   15   16   17   20   22   25   32   34   38   40   43   45   48   48   50   51   53   57   59 
LCS_GDT     L     103     L     103     16   22   41     7   15   16   17   20   22   25   28   33   36   40   43   45   48   48   50   51   52   55   58 
LCS_GDT     F     104     F     104     16   22   41     4    8   15   16   20   22   24   27   29   36   40   43   45   48   48   50   51   52   56   58 
LCS_GDT     V     105     V     105     10   22   41     4    8   13   16   20   22   25   28   34   38   40   43   45   48   48   50   51   53   57   59 
LCS_GDT     D     106     D     106      5   21   41     4    5    6    9   14   19   22   28   34   38   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     E     107     E     107      5    8   41     4    5    6    6    6   15   15   22   26   32   40   43   45   48   48   50   51   53   57   60 
LCS_GDT     K     108     K     108      5    8   41     4    5    6    6    9   12   18   22   25   28   31   39   44   47   48   50   51   53   57   60 
LCS_GDT     K     109     K     109      5    8   41     4    5    6   10   14   19   22   25   29   34   40   43   45   48   48   50   51   53   57   60 
LCS_AVERAGE  LCS_A:  18.42  (   9.68   13.54   32.03 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     17     18     20     21     23     25     32     34     38     40     43     45     48     48     50     51     53     57     60 
GDT PERCENT_CA  10.09  15.60  16.51  18.35  19.27  21.10  22.94  29.36  31.19  34.86  36.70  39.45  41.28  44.04  44.04  45.87  46.79  48.62  52.29  55.05
GDT RMS_LOCAL    0.29   0.63   0.71   1.06   1.29   1.53   2.14   2.87   3.23   3.51   3.61   3.86   4.14   4.48   4.48   4.72   4.86   5.58   6.05   6.62
GDT RMS_ALL_CA  20.38  19.69  19.63  19.69  19.33  19.23  19.62  19.39  19.33  19.29  19.47  19.30  19.12  18.98  18.98  18.91  18.95  18.20  18.19  17.52

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         17.375
LGA    N       2      N       2         16.683
LGA    I       3      I       3         15.654
LGA    E       4      E       4         17.251
LGA    R       5      R       5         18.592
LGA    L       6      L       6         20.442
LGA    T       7      T       7         25.259
LGA    T       8      T       8         24.878
LGA    L       9      L       9         24.832
LGA    Q      10      Q      10         30.743
LGA    P      11      P      11         28.517
LGA    V      12      V      12         26.612
LGA    W      13      W      13         33.146
LGA    D      14      D      14         35.688
LGA    R      15      R      15         31.823
LGA    Y      16      Y      16         34.636
LGA    D      17      D      17         36.583
LGA    T      18      T      18         36.304
LGA    Q      19      Q      19         33.137
LGA    I      20      I      20         32.638
LGA    H      21      H      21         35.383
LGA    N      22      N      22         33.795
LGA    Q      23      Q      23         29.624
LGA    K      24      K      24         26.445
LGA    D      25      D      25         27.698
LGA    N      26      N      26         21.946
LGA    D      27      D      27         16.511
LGA    N      28      N      28         14.531
LGA    E      29      E      29         17.215
LGA    V      30      V      30         17.008
LGA    P      31      P      31         17.758
LGA    V      32      V      32         23.835
LGA    H      33      H      33         28.739
LGA    Q      34      Q      34         29.320
LGA    V      35      V      35         29.337
LGA    S      36      S      36         36.271
LGA    Y      37      Y      37         38.719
LGA    T      38      T      38         38.682
LGA    N      39      N      39         31.887
LGA    L      40      L      40         29.076
LGA    A      41      A      41         31.325
LGA    E      42      E      42         29.169
LGA    M      43      M      43         21.852
LGA    V      44      V      44         22.075
LGA    G      45      G      45         24.570
LGA    E      46      E      46         20.472
LGA    M      47      M      47         14.074
LGA    N      48      N      48         15.905
LGA    K      49      K      49         17.241
LGA    L      50      L      50         11.770
LGA    L      51      L      51          6.837
LGA    E      52      E      52         10.337
LGA    P      53      P      53         12.073
LGA    S      54      S      54          7.729
LGA    Q      55      Q      55          3.882
LGA    V      56      V      56          2.648
LGA    H      57      H      57          2.033
LGA    L      58      L      58          2.913
LGA    K      59      K      59          4.567
LGA    F      60      F      60          7.476
LGA    E      61      E      61         10.349
LGA    L      62      L      62         13.603
LGA    H      63      H      63         17.286
LGA    D      64      D      64         21.647
LGA    K      65      K      65         24.594
LGA    L      66      L      66         24.688
LGA    N      67      N      67         24.519
LGA    E      68      E      68         19.096
LGA    Y      69      Y      69         16.334
LGA    Y      70      Y      70         11.280
LGA    V      71      V      71          8.286
LGA    K      72      K      72          6.691
LGA    V      73      V      73          3.282
LGA    I      74      I      74          2.177
LGA    E      75      E      75          0.444
LGA    D      76      D      76          1.634
LGA    S      77      S      77          3.924
LGA    T      78      T      78          3.429
LGA    N      79      N      79          3.980
LGA    E      80      E      80          3.719
LGA    V      81      V      81          3.875
LGA    I      82      I      82          5.894
LGA    R      83      R      83          5.726
LGA    E      84      E      84          2.629
LGA    I      85      I      85          2.716
LGA    P      86      P      86          2.236
LGA    P      87      P      87          3.019
LGA    K      88      K      88          3.276
LGA    R      89      R      89          3.274
LGA    W      90      W      90          3.821
LGA    L      91      L      91          3.483
LGA    D      92      D      92          1.635
LGA    F      93      F      93          1.642
LGA    Y      94      Y      94          1.951
LGA    A      95      A      95          0.973
LGA    A      96      A      96          1.496
LGA    M      97      M      97          2.018
LGA    T      98      T      98          1.721
LGA    E      99      E      99          2.708
LGA    F     100      F     100          3.821
LGA    L     101      L     101          3.928
LGA    G     102      G     102          3.276
LGA    L     103      L     103          5.522
LGA    F     104      F     104          7.523
LGA    V     105      V     105          6.756
LGA    D     106      D     106          8.311
LGA    E     107      E     107          9.351
LGA    K     108      K     108         12.912
LGA    K     109      K     109         10.964

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     32    2.87    27.294    23.887     1.077

LGA_LOCAL      RMSD =  2.871  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.471  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 16.478  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.196307 * X  +  -0.891920 * Y  +   0.407359 * Z  +  -0.953319
  Y_new =  -0.037771 * X  +  -0.422013 * Y  +  -0.905803 * Z  +   3.240094
  Z_new =   0.979815 * X  +   0.162429 * Y  +  -0.116533 * Z  + -11.871787 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.193130   -0.948462  [ DEG:   125.6571    -54.3429 ]
  Theta =  -1.369533   -1.772060  [ DEG:   -78.4684   -101.5316 ]
  Phi   =  -0.190085    2.951508  [ DEG:   -10.8911    169.1089 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS599_2                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS599_2.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   32   2.87  23.887    16.48
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS599_2
PFRMAT TS                                                                       
TARGET T0350                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       2.613   9.081 -16.311  1.00  0.00              
ATOM      2  CA  ASN     2      -0.903   8.794 -15.690  1.00  0.00              
ATOM      3  CA  ILE     3      -0.572  12.978 -15.568  1.00  0.00              
ATOM      4  CA  GLU     4      -2.678   9.845 -14.834  1.00  0.00              
ATOM      5  CA  ARG     5      -3.466  11.024 -11.244  1.00  0.00              
ATOM      6  CA  LEU     6      -4.596  14.518 -12.064  1.00  0.00              
ATOM      7  CA  THR     7      -7.155  13.809 -14.835  1.00  0.00              
ATOM      8  CA  THR     8      -8.746  11.148 -12.602  1.00  0.00              
ATOM      9  CA  LEU     9      -9.035  13.332  -9.477  1.00  0.00              
ATOM     10  CA  GLN    10     -10.714  16.205 -11.325  1.00  0.00              
ATOM     11  CA  PRO    11     -13.410  13.778 -12.550  1.00  0.00              
ATOM     12  CA  VAL    12     -13.819  12.548  -8.972  1.00  0.00              
ATOM     13  CA  TRP    13     -14.148  16.058  -7.544  1.00  0.00              
ATOM     14  CA  ASP    14     -17.021  16.587  -9.905  1.00  0.00              
ATOM     15  CA  ARG    15     -18.794  13.301  -8.924  1.00  0.00              
ATOM     16  CA  TYR    16     -19.279  13.887  -5.256  1.00  0.00              
ATOM     17  CA  ASP    17     -16.469  12.731  -3.054  1.00  0.00              
ATOM     18  CA  THR    18     -18.782  10.354  -1.116  1.00  0.00              
ATOM     19  CA  GLN    19     -20.101   8.887  -4.373  1.00  0.00              
ATOM     20  CA  ILE    20     -16.547   8.350  -5.671  1.00  0.00              
ATOM     21  CA  HIS    21     -15.321   6.625  -2.502  1.00  0.00              
ATOM     22  CA  ASN    22     -18.229   4.258  -2.796  1.00  0.00              
ATOM     23  CA  GLN    23     -17.408   3.639  -6.408  1.00  0.00              
ATOM     24  CA  LYS    24     -13.763   2.842  -5.605  1.00  0.00              
ATOM     25  CA  ASP    25     -14.826   0.417  -2.814  1.00  0.00              
ATOM     26  CA  ASN    26     -17.174  -1.523  -5.106  1.00  0.00              
ATOM     27  CA  ASP    27     -14.627  -1.599  -7.875  1.00  0.00              
ATOM     28  CA  ASN    28     -12.279  -3.181  -5.286  1.00  0.00              
ATOM     29  CA  GLU    29     -14.504  -5.818  -3.808  1.00  0.00              
ATOM     30  CA  VAL    30     -15.630  -7.440  -7.073  1.00  0.00              
ATOM     31  CA  PRO    31     -12.017  -7.260  -8.177  1.00  0.00              
ATOM     32  CA  VAL    32     -10.940  -9.234  -5.187  1.00  0.00              
ATOM     33  CA  HIS    33     -13.578 -11.849  -5.540  1.00  0.00              
ATOM     34  CA  GLN    34     -13.111 -12.357  -9.257  1.00  0.00              
ATOM     35  CA  VAL    35      -9.329 -12.720  -8.970  1.00  0.00              
ATOM     36  CA  SER    36      -9.099 -13.906  -5.413  1.00  0.00              
ATOM     37  CA  TYR    37      -7.766 -11.943  -2.493  1.00  0.00              
ATOM     38  CA  THR    38      -4.409 -13.778  -2.384  1.00  0.00              
ATOM     39  CA  ASN    39      -3.908 -13.295  -6.139  1.00  0.00              
ATOM     40  CA  LEU    40      -4.790  -9.548  -5.904  1.00  0.00              
ATOM     41  CA  ALA    41      -2.282  -9.039  -3.109  1.00  0.00              
ATOM     42  CA  GLU    42       0.368 -10.796  -5.229  1.00  0.00              
ATOM     43  CA  MET    43      -0.434  -8.482  -8.182  1.00  0.00              
ATOM     44  CA  VAL    44       0.010  -5.488  -5.827  1.00  0.00              
ATOM     45  CA  GLY    45       3.414  -6.709  -4.616  1.00  0.00              
ATOM     46  CA  GLU    46       4.600  -7.218  -8.216  1.00  0.00              
ATOM     47  CA  MET    47       3.330  -3.742  -9.137  1.00  0.00              
ATOM     48  CA  ASN    48       5.144  -2.203  -6.170  1.00  0.00              
ATOM     49  CA  LYS    49       8.336  -3.785  -7.499  1.00  0.00              
ATOM     50  CA  LEU    50       7.617  -2.369 -10.955  1.00  0.00              
ATOM     51  CA  LEU    51       7.096   1.100  -9.468  1.00  0.00              
ATOM     52  CA  GLU    52      10.392   0.943  -7.553  1.00  0.00              
ATOM     53  CA  PRO    53      12.172  -0.058 -10.771  1.00  0.00              
ATOM     54  CA  SER    54      10.507   2.880 -12.655  1.00  0.00              
ATOM     55  CA  GLN    55      11.558   5.218  -9.856  1.00  0.00              
ATOM     56  CA  VAL    56      15.179   4.392 -10.821  1.00  0.00              
ATOM     57  CA  HIS    57      14.639   6.263 -14.102  1.00  0.00              
ATOM     58  CA  LEU    58      11.074   6.819 -15.051  1.00  0.00              
ATOM     59  CA  LYS    59      10.031   9.263 -17.662  1.00  0.00              
ATOM     60  CA  PHE    60       6.327  10.194 -17.824  1.00  0.00              
ATOM     61  CA  GLU    61       4.800  11.753 -20.893  1.00  0.00              
ATOM     62  CA  LEU    62       1.251  12.991 -20.799  1.00  0.00              
ATOM     63  CA  HIS    63      -0.533  13.714 -23.949  1.00  0.00              
ATOM     64  CA  ASP    64      -3.149  16.363 -23.447  1.00  0.00              
ATOM     65  CA  LYS    65      -4.990  15.840 -26.665  1.00  0.00              
ATOM     66  CA  LEU    66      -5.407  12.116 -26.461  1.00  0.00              
ATOM     67  CA  ASN    67      -5.665  12.042 -22.676  1.00  0.00              
ATOM     68  CA  GLU    68      -3.068   9.343 -22.707  1.00  0.00              
ATOM     69  CA  TYR    69      -0.265   8.646 -20.466  1.00  0.00              
ATOM     70  CA  TYR    70       3.063   7.526 -21.923  1.00  0.00              
ATOM     71  CA  VAL    71       5.672   5.979 -19.720  1.00  0.00              
ATOM     72  CA  LYS    72       9.253   5.803 -20.823  1.00  0.00              
ATOM     73  CA  VAL    73      11.703   3.772 -18.809  1.00  0.00              
ATOM     74  CA  ILE    74      15.327   4.802 -18.958  1.00  0.00              
ATOM     75  CA  GLU    75      18.061   3.316 -16.713  1.00  0.00              
ATOM     76  CA  ASP    76      20.425   6.211 -16.268  1.00  0.00              
ATOM     77  CA  SER    77      23.581   4.373 -16.021  1.00  0.00              
ATOM     78  CA  THR    78      23.356   1.815 -18.767  1.00  0.00              
ATOM     79  CA  ASN    79      20.426   2.944 -20.953  1.00  0.00              
ATOM     80  CA  GLU    80      19.039  -0.541 -21.004  1.00  0.00              
ATOM     81  CA  VAL    81      15.308  -0.582 -20.432  1.00  0.00              
ATOM     82  CA  ILE    82      14.546   2.162 -22.877  1.00  0.00              
ATOM     83  CA  ARG    83      16.598   0.603 -25.622  1.00  0.00              
ATOM     84  CA  GLU    84      15.060  -2.808 -25.279  1.00  0.00              
ATOM     85  CA  ILE    85      11.516  -1.856 -25.229  1.00  0.00              
ATOM     86  CA  PRO    86       9.338  -1.857 -28.257  1.00  0.00              
ATOM     87  CA  PRO    87       6.831   0.938 -27.900  1.00  0.00              
ATOM     88  CA  LYS    88       3.840  -1.427 -27.619  1.00  0.00              
ATOM     89  CA  ARG    89       5.323  -3.343 -24.729  1.00  0.00              
ATOM     90  CA  TRP    90       6.148  -0.190 -22.754  1.00  0.00              
ATOM     91  CA  LEU    91       2.539   1.049 -23.169  1.00  0.00              
ATOM     92  CA  ASP    92       1.201  -2.346 -21.985  1.00  0.00              
ATOM     93  CA  PHE    93       3.428  -2.361 -18.909  1.00  0.00              
ATOM     94  CA  TYR    94       2.269   1.208 -18.129  1.00  0.00              
ATOM     95  CA  ALA    95      -1.412   0.149 -18.533  1.00  0.00              
ATOM     96  CA  ALA    96      -0.730  -2.755 -16.166  1.00  0.00              
ATOM     97  CA  MET    97       0.914  -0.402 -13.628  1.00  0.00              
ATOM     98  CA  THR    98      -1.992   2.063 -13.713  1.00  0.00              
ATOM     99  CA  GLU    99      -4.503  -0.630 -13.035  1.00  0.00              
ATOM    100  CA  PHE   100      -2.511  -1.920 -10.140  1.00  0.00              
ATOM    101  CA  LEU   101      -1.279   1.131  -8.137  1.00  0.00              
ATOM    102  CA  GLY   102      -4.650   2.777  -8.433  1.00  0.00              
ATOM    103  CA  LEU   103      -6.596  -0.281  -7.523  1.00  0.00              
ATOM    104  CA  PHE   104      -4.550  -1.387  -4.467  1.00  0.00              
ATOM    105  CA  VAL   105      -3.777   1.989  -2.965  1.00  0.00              
ATOM    106  CA  ASP   106      -2.335   1.867   0.509  1.00  0.00              
ATOM    107  CA  GLU   107      -3.568   5.086   2.126  1.00  0.00              
ATOM    108  CA  LYS   108       0.027   6.221   2.771  1.00  0.00              
ATOM    109  CA  LYS   109       0.968   5.992  -0.930  1.00  0.00              
ATOM    110  CA  LEU   110      -2.229   7.817  -1.978  1.00  0.00              
ATOM    111  CA  GLU   111      -1.591  10.587   0.589  1.00  0.00              
ATOM    112  CA  HIS   112       1.965  11.032  -0.543  1.00  0.00              
ATOM    113  CA  HIS   113       1.059  11.280  -4.244  1.00  0.00              
ATOM    114  CA  HIS   114      -1.216  14.269  -3.749  1.00  0.00              
ATOM    115  CA  HIS   115      -4.672  13.037  -4.317  1.00  0.00              
ATOM    116  CA  HIS   116      -8.473  11.284  -3.722  1.00  0.00              
ATOM    117  CA  HIS   117      -9.962  15.160  -3.095  1.00  0.00              
TER                                                                             
END
