
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS599_3
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS599_3.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        72 - 109         4.47    18.50
  LCS_AVERAGE:     28.86

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        84 - 107         1.85    18.58
  LCS_AVERAGE:     14.06

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        35 - 54          0.98    21.95
  LCS_AVERAGE:     10.35

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    3   20     0    3    3    4    9   10   11   13   15   17   20   22   24   27   28   30   33   35   41   44 
LCS_GDT     N       2     N       2      5    6   20     1    4    5    8    9   10   11   13   15   17   20   22   24   27   28   35   36   40   43   44 
LCS_GDT     I       3     I       3      5    6   20     4    4    5    5    7   10   14   16   21   23   30   34   36   40   41   44   47   49   53   58 
LCS_GDT     E       4     E       4      5    6   20     4    4    5    5    7    7    8   11   13   15   18   22   24   24   30   35   36   39   41   44 
LCS_GDT     R       5     R       5      5    6   20     4    4    5    5    7    7    8   10   12   13   17   19   24   26   28   32   36   36   39   42 
LCS_GDT     L       6     L       6      5    6   20     4    4    5    5    9   10   11   13   15   17   21   29   31   38   41   44   45   46   53   58 
LCS_GDT     T       7     T       7      3   10   20     3    3    3    5    6    9   11   11   15   17   20   22   27   32   34   38   43   45   48   52 
LCS_GDT     T       8     T       8      3   10   20     3    3    3    4    9    9   11   11   13   17   18   22   23   29   34   38   43   45   48   51 
LCS_GDT     L       9     L       9      8   10   21     7    8    8    8   11   20   24   25   28   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     Q      10     Q      10      8   10   21     7    8    8    9   20   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     P      11     P      11      8   10   22     7    8    8    8   13   20   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     V      12     V      12      8   10   22     7    8    8    8    9   12   18   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     W      13     W      13      8   10   22     7    8    8    8    9   14   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     D      14     D      14      8   10   22     7    8    8    8    9   13   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     R      15     R      15      8   10   22     7    8    8    8    9   10   12   16   28   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     Y      16     Y      16      8   10   22     6    8    8    8    9   10   11   13   18   21   22   23   25   29   42   48   50   55   56   58 
LCS_GDT     D      17     D      17      8   10   22     6    8    8    8    8   13   22   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     T      18     T      18      8    9   22     6    8    8    8   12   16   19   23   28   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     Q      19     Q      19      8    9   22     6    8    8    8    9   13   20   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     I      20     I      20      8    9   22     6    8    8    8    8   10   23   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     H      21     H      21      8    9   22     6    8    8    8    8   11   17   22   28   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     N      22     N      22      8    9   22     4    8    8    8    8    9   14   20   28   32   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     Q      23     Q      23      8    9   22     4    8    8    8    8    9   10   15   23   32   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     K      24     K      24      3    4   22     3    3    4    5    5    6   10   17   18   21   22   23   25   32   35   47   52   55   56   59 
LCS_GDT     D      25     D      25      3    4   32     3    3    5    7   10   12   15   17   18   21   22   23   25   32   38   47   52   55   56   59 
LCS_GDT     N      26     N      26      3    4   32     3    3    3    7   10   12   15   17   18   21   22   29   35   38   42   47   52   55   56   59 
LCS_GDT     D      27     D      27      3    4   32     3    3    4    7   10   12   15   17   18   21   22   25   28   32   40   47   52   55   56   59 
LCS_GDT     N      28     N      28      3    4   32     3    3    3    4    4    5    6    6   12   15   19   22   27   30   34   38   42   46   53   59 
LCS_GDT     E      29     E      29      3    4   32     3    3    3    3    4    8   12   16   20   23   26   30   32   35   39   41   43   49   55   59 
LCS_GDT     V      30     V      30      3    4   32     3    4    5    6    8   10   18   23   28   32   34   36   37   41   42   47   52   55   56   59 
LCS_GDT     P      31     P      31      3    4   32     4    4    8   12   14   17   22   24   28   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     V      32     V      32      3    4   32     3    3    4    7   10   13   18   23   28   32   34   38   40   41   42   48   52   55   56   59 
LCS_GDT     H      33     H      33      3    4   32     3    4    8   13   14   18   22   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     Q      34     Q      34      3   22   32     3    8   12   18   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     V      35     V      35     20   22   32     8   17   18   20   22   23   23   25   27   27   33   38   40   41   42   48   52   54   56   59 
LCS_GDT     S      36     S      36     20   22   32     8   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     Y      37     Y      37     20   22   32     6   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     T      38     T      38     20   22   32     8   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     N      39     N      39     20   22   32     5   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     L      40     L      40     20   22   32     5   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     A      41     A      41     20   22   32     5   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     E      42     E      42     20   22   32     6   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     M      43     M      43     20   22   32     8   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     V      44     V      44     20   22   32     8   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     G      45     G      45     20   22   32     8   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     E      46     E      46     20   22   32     5   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     M      47     M      47     20   22   32     8   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     N      48     N      48     20   22   32     8   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     K      49     K      49     20   22   32     6   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   58 
LCS_GDT     L      50     L      50     20   22   32     6   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     L      51     L      51     20   22   32     4   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     E      52     E      52     20   22   32     6   17   18   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   58 
LCS_GDT     P      53     P      53     20   22   32     4    9   14   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   58 
LCS_GDT     S      54     S      54     20   22   32     4    6   14   20   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     Q      55     Q      55      5   22   32     3    4    8   19   22   23   24   25   30   34   36   38   40   41   42   48   52   55   56   59 
LCS_GDT     V      56     V      56      9   11   32     3    7    8    9   12   14   16   17   20   24   30   34   40   41   42   48   52   55   56   59 
LCS_GDT     H      57     H      57      9   11   31     5    7    8    9   12   14   16   17   22   29   34   35   38   41   42   48   52   55   56   59 
LCS_GDT     L      58     L      58      9   11   30     5    7    8    9   12   14   22   29   32   32   34   36   37   39   40   47   52   55   56   59 
LCS_GDT     K      59     K      59      9   11   30     5    7    8    9   12   14   16   17   18   20   33   36   37   39   39   40   40   43   52   59 
LCS_GDT     F      60     F      60      9   11   30     5    7    8    9   12   14   16   17   18   20   23   25   27   29   31   33   38   39   41   41 
LCS_GDT     E      61     E      61      9   11   30     3    7    8    9   12   14   16   17   18   20   23   25   27   29   31   32   36   36   37   39 
LCS_GDT     L      62     L      62      9   11   30     5    7    8    9   12   14   16   17   18   20   23   25   27   29   31   32   36   36   37   39 
LCS_GDT     H      63     H      63      9   13   30     3    7    8    9   12   14   16   17   18   20   23   25   27   29   31   32   36   36   37   39 
LCS_GDT     D      64     D      64      9   14   30     3    5    8   11   13   14   16   17   18   20   23   25   27   29   31   32   36   36   37   39 
LCS_GDT     K      65     K      65      3   14   30     3    3    6    8   12   14   16   17   18   20   23   25   27   29   31   32   33   36   37   39 
LCS_GDT     L      66     L      66     10   14   30     3    7    9   11   13   14   16   17   18   20   23   25   27   29   31   32   33   34   36   38 
LCS_GDT     N      67     N      67     10   14   30     3    6    9   11   13   14   16   17   18   20   23   25   27   29   31   32   33   34   36   38 
LCS_GDT     E      68     E      68     10   14   30     3    7    9   11   13   14   16   17   18   20   23   25   27   29   31   32   33   34   37   39 
LCS_GDT     Y      69     Y      69     10   14   30     3    6    9   11   13   14   16   17   18   20   23   25   27   29   31   32   36   36   37   39 
LCS_GDT     Y      70     Y      70     10   14   30     4    7    9   11   13   14   16   17   18   20   23   25   27   29   31   32   36   36   37   40 
LCS_GDT     V      71     V      71     10   14   30     4    7    9   11   13   14   16   17   18   20   23   25   27   29   31   32   36   36   37   40 
LCS_GDT     K      72     K      72     10   14   38     4    7    9   11   13   14   15   17   18   20   23   25   27   29   31   32   36   38   39   41 
LCS_GDT     V      73     V      73     10   14   38     4    7    9   11   13   14   15   21   25   27   33   36   37   39   39   40   40   44   45   47 
LCS_GDT     I      74     I      74     10   14   38     4    7    9   11   13   14   15   23   26   31   33   36   37   39   39   40   40   44   45   53 
LCS_GDT     E      75     E      75     10   14   38     6    7    9   11   17   24   25   29   32   32   34   36   37   39   39   40   40   49   56   59 
LCS_GDT     D      76     D      76      7   14   38     6    7    7    9   13   20   25   29   32   32   34   36   37   39   39   42   51   53   56   59 
LCS_GDT     S      77     S      77      7   14   38     6    7    9   11   13   19   24   28   32   32   34   36   37   39   39   40   40   46   53   59 
LCS_GDT     T      78     T      78      7   10   38     6    7    7    8   13   20   25   29   32   32   34   36   37   39   39   40   40   44   49   59 
LCS_GDT     N      79     N      79      7   10   38     6    7    7    8   10   13   16   23   32   32   34   36   37   39   39   40   45   53   56   59 
LCS_GDT     E      80     E      80      7    9   38     6    7    7    8   10   13   16   29   32   32   34   36   37   39   39   40   40   46   52   59 
LCS_GDT     V      81     V      81      7    9   38     4    7    7    8   10   13   21   29   32   32   34   36   37   39   39   40   40   44   51   59 
LCS_GDT     I      82     I      82      4    5   38     3    3    4    4    5   11   15   21   26   32   34   35   36   39   39   40   40   46   54   59 
LCS_GDT     R      83     R      83      4   14   38     3    3    4    6    7   12   14   17   24   25   34   35   36   39   39   40   40   44   45   47 
LCS_GDT     E      84     E      84     10   24   38     7    7   11   13   16   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     I      85     I      85     10   24   38     7    7   11   16   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     P      86     P      86     11   24   38     7    7   14   19   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     P      87     P      87     17   24   38     7   11   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     K      88     K      88     17   24   38     7    7   11   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     R      89     R      89     18   24   38     7   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     W      90     W      90     18   24   38    10   14   17   20   22   24   24   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     L      91     L      91     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     D      92     D      92     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     F      93     F      93     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     Y      94     Y      94     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     A      95     A      95     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     A      96     A      96     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   47 
LCS_GDT     M      97     M      97     18   24   38     6   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   49   59 
LCS_GDT     T      98     T      98     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   56   59 
LCS_GDT     E      99     E      99     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   44   45   51 
LCS_GDT     F     100     F     100     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   40   40   45   56   59 
LCS_GDT     L     101     L     101     18   24   38    10   14   17   20   22   24   25   29   32   32   34   36   37   39   39   47   52   55   56   59 
LCS_GDT     G     102     G     102     18   24   38     5   14   17   20   22   24   25   29   32   32   34   36   37   39   41   48   52   55   56   59 
LCS_GDT     L     103     L     103     18   24   38     5   14   17   20   22   24   25   29   32   32   34   36   37   39   41   46   52   55   56   59 
LCS_GDT     F     104     F     104     18   24   38     5   11   17   20   22   24   25   29   32   32   34   36   37   39   42   48   52   55   56   59 
LCS_GDT     V     105     V     105     18   24   38     5   11   17   20   22   24   25   29   32   32   34   36   37   39   42   48   52   55   56   59 
LCS_GDT     D     106     D     106     18   24   38     5   11   16   20   22   24   25   29   32   32   34   36   37   39   42   48   52   55   56   59 
LCS_GDT     E     107     E     107      5   24   38     4    5    6    7   10   14   23   27   32   32   34   38   39   41   42   48   52   55   56   59 
LCS_GDT     K     108     K     108      5   21   38     4    7    7    8   10   14   18   22   25   32   34   36   37   39   42   48   52   55   56   59 
LCS_GDT     K     109     K     109      5   10   38     4    5    6    6   10   13   15   18   23   26   30   36   37   39   39   40   40   48   54   59 
LCS_AVERAGE  LCS_A:  17.76  (  10.35   14.06   28.86 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     17     18     20     22     24     25     29     32     34     36     38     40     41     42     48     52     55     56     59 
GDT PERCENT_CA   9.17  15.60  16.51  18.35  20.18  22.02  22.94  26.61  29.36  31.19  33.03  34.86  36.70  37.61  38.53  44.04  47.71  50.46  51.38  54.13
GDT RMS_LOCAL    0.30   0.60   0.65   0.98   1.42   1.86   2.35   2.68   2.99   3.48   3.64   3.81   4.06   4.21   4.40   5.44   5.90   6.34   6.34   7.33
GDT RMS_ALL_CA  18.86  21.92  21.83  21.95  18.69  18.82  18.95  18.81  18.77  19.38  19.37  19.38  19.23  19.19  19.13  18.57  18.33  17.93  17.97  16.80

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         26.424
LGA    N       2      N       2         22.679
LGA    I       3      I       3         16.367
LGA    E       4      E       4         20.791
LGA    R       5      R       5         25.240
LGA    L       6      L       6         20.092
LGA    T       7      T       7         22.065
LGA    T       8      T       8         25.280
LGA    L       9      L       9         21.861
LGA    Q      10      Q      10         21.882
LGA    P      11      P      11         22.032
LGA    V      12      V      12         22.179
LGA    W      13      W      13         22.461
LGA    D      14      D      14         22.839
LGA    R      15      R      15         23.116
LGA    Y      16      Y      16         23.794
LGA    D      17      D      17         26.202
LGA    T      18      T      18         28.749
LGA    Q      19      Q      19         26.465
LGA    I      20      I      20         25.474
LGA    H      21      H      21         29.447
LGA    N      22      N      22         31.883
LGA    Q      23      Q      23         28.928
LGA    K      24      K      24         26.550
LGA    D      25      D      25         27.031
LGA    N      26      N      26         27.451
LGA    D      27      D      27         23.507
LGA    N      28      N      28         24.549
LGA    E      29      E      29         23.467
LGA    V      30      V      30         26.176
LGA    P      31      P      31         21.970
LGA    V      32      V      32         23.658
LGA    H      33      H      33         24.564
LGA    Q      34      Q      34         26.787
LGA    V      35      V      35         25.621
LGA    S      36      S      36         23.453
LGA    Y      37      Y      37         20.117
LGA    T      38      T      38         16.075
LGA    N      39      N      39         18.172
LGA    L      40      L      40         17.857
LGA    A      41      A      41         13.649
LGA    E      42      E      42         12.809
LGA    M      43      M      43         14.382
LGA    V      44      V      44         12.933
LGA    G      45      G      45         10.723
LGA    E      46      E      46         11.460
LGA    M      47      M      47         11.270
LGA    N      48      N      48         11.890
LGA    K      49      K      49         12.100
LGA    L      50      L      50         11.334
LGA    L      51      L      51         12.298
LGA    E      52      E      52         14.350
LGA    P      53      P      53         15.104
LGA    S      54      S      54         13.325
LGA    Q      55      Q      55         16.119
LGA    V      56      V      56         12.691
LGA    H      57      H      57          6.999
LGA    L      58      L      58          3.996
LGA    K      59      K      59          7.687
LGA    F      60      F      60         12.025
LGA    E      61      E      61         19.472
LGA    L      62      L      62         24.861
LGA    H      63      H      63         30.758
LGA    D      64      D      64         36.843
LGA    K      65      K      65         41.215
LGA    L      66      L      66         43.119
LGA    N      67      N      67         41.409
LGA    E      68      E      68         34.021
LGA    Y      69      Y      69         29.616
LGA    Y      70      Y      70         22.750
LGA    V      71      V      71         17.968
LGA    K      72      K      72         14.202
LGA    V      73      V      73          7.984
LGA    I      74      I      74          6.573
LGA    E      75      E      75          1.890
LGA    D      76      D      76          3.221
LGA    S      77      S      77          4.255
LGA    T      78      T      78          3.386
LGA    N      79      N      79          4.746
LGA    E      80      E      80          3.926
LGA    V      81      V      81          3.964
LGA    I      82      I      82          6.301
LGA    R      83      R      83          6.170
LGA    E      84      E      84          3.056
LGA    I      85      I      85          2.956
LGA    P      86      P      86          2.164
LGA    P      87      P      87          2.857
LGA    K      88      K      88          2.945
LGA    R      89      R      89          3.244
LGA    W      90      W      90          3.771
LGA    L      91      L      91          3.785
LGA    D      92      D      92          2.529
LGA    F      93      F      93          2.016
LGA    Y      94      Y      94          2.367
LGA    A      95      A      95          1.949
LGA    A      96      A      96          1.158
LGA    M      97      M      97          1.200
LGA    T      98      T      98          1.016
LGA    E      99      E      99          1.275
LGA    F     100      F     100          1.448
LGA    L     101      L     101          1.846
LGA    G     102      G     102          1.822
LGA    L     103      L     103          2.350
LGA    F     104      F     104          3.097
LGA    V     105      V     105          3.374
LGA    D     106      D     106          2.809
LGA    E     107      E     107          5.129
LGA    K     108      K     108          7.948
LGA    K     109      K     109         10.088

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     29    2.68    26.147    22.995     1.044

LGA_LOCAL      RMSD =  2.679  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.775  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 14.937  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.810801 * X  +  -0.051210 * Y  +  -0.583077 * Z  +  -0.287126
  Y_new =  -0.465032 * X  +  -0.661307 * Y  +  -0.588572 * Z  +   7.948556
  Z_new =  -0.355453 * X  +   0.748365 * Y  +  -0.560003 * Z  + -17.438280 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.213210   -0.928383  [ DEG:   126.8076    -53.1924 ]
  Theta =   0.363398    2.778194  [ DEG:    20.8212    159.1788 ]
  Phi   =  -0.520741    2.620851  [ DEG:   -29.8363    150.1637 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS599_3                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS599_3.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   29   2.68  22.995    14.94
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS599_3
PFRMAT TS                                                                       
TARGET T0350                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      -4.487  18.320 -20.838  1.00  0.00              
ATOM      2  CA  ASN     2      -1.245  16.242 -19.141  1.00  0.00              
ATOM      3  CA  ILE     3      -0.196  13.015 -16.660  1.00  0.00              
ATOM      4  CA  GLU     4      -4.221  14.179 -16.919  1.00  0.00              
ATOM      5  CA  ARG     5      -4.520  11.846 -19.929  1.00  0.00              
ATOM      6  CA  LEU     6      -3.297   8.721 -18.163  1.00  0.00              
ATOM      7  CA  THR     7      -5.635   9.085 -15.124  1.00  0.00              
ATOM      8  CA  THR     8      -8.637   9.577 -17.365  1.00  0.00              
ATOM      9  CA  LEU     9      -8.089   6.596 -19.685  1.00  0.00              
ATOM     10  CA  GLN    10      -8.152   3.981 -16.972  1.00  0.00              
ATOM     11  CA  PRO    11     -11.409   5.379 -15.539  1.00  0.00              
ATOM     12  CA  VAL    12     -13.062   5.445 -18.976  1.00  0.00              
ATOM     13  CA  TRP    13     -11.993   1.852 -19.781  1.00  0.00              
ATOM     14  CA  ASP    14     -13.603   0.714 -16.543  1.00  0.00              
ATOM     15  CA  ARG    15     -16.837   2.627 -17.471  1.00  0.00              
ATOM     16  CA  TYR    16     -17.800   0.673 -20.497  1.00  0.00              
ATOM     17  CA  ASP    17     -16.499   1.276 -23.861  1.00  0.00              
ATOM     18  CA  THR    18     -19.476   3.126 -25.415  1.00  0.00              
ATOM     19  CA  GLN    19     -19.637   5.494 -22.422  1.00  0.00              
ATOM     20  CA  ILE    20     -15.906   6.261 -22.606  1.00  0.00              
ATOM     21  CA  HIS    21     -16.052   7.006 -26.322  1.00  0.00              
ATOM     22  CA  ASN    22     -18.872   9.453 -25.797  1.00  0.00              
ATOM     23  CA  GLN    23     -16.999  11.061 -22.872  1.00  0.00              
ATOM     24  CA  LYS    24     -13.795  11.491 -24.889  1.00  0.00              
ATOM     25  CA  ASP    25     -15.931  13.122 -27.608  1.00  0.00              
ATOM     26  CA  ASN    26     -17.625  15.572 -25.277  1.00  0.00              
ATOM     27  CA  ASP    27     -14.383  15.986 -23.395  1.00  0.00              
ATOM     28  CA  ASN    28     -13.035  17.352 -26.595  1.00  0.00              
ATOM     29  CA  GLU    29     -15.717  19.471 -27.864  1.00  0.00              
ATOM     30  CA  VAL    30     -16.294  22.048 -25.194  1.00  0.00              
ATOM     31  CA  PRO    31     -12.530  21.870 -24.613  1.00  0.00              
ATOM     32  CA  VAL    32     -11.885  23.137 -28.070  1.00  0.00              
ATOM     33  CA  HIS    33     -14.184  25.973 -27.811  1.00  0.00              
ATOM     34  CA  GLN    34     -13.517  27.195 -24.315  1.00  0.00              
ATOM     35  CA  VAL    35      -9.690  27.368 -24.693  1.00  0.00              
ATOM     36  CA  SER    36      -9.465  28.173 -28.385  1.00  0.00              
ATOM     37  CA  TYR    37      -8.645  25.490 -30.988  1.00  0.00              
ATOM     38  CA  THR    38      -5.098  26.593 -31.581  1.00  0.00              
ATOM     39  CA  ASN    39      -4.333  26.656 -27.823  1.00  0.00              
ATOM     40  CA  LEU    40      -5.778  23.284 -27.283  1.00  0.00              
ATOM     41  CA  ALA    41      -3.772  21.710 -30.052  1.00  0.00              
ATOM     42  CA  GLU    42      -0.597  23.290 -28.603  1.00  0.00              
ATOM     43  CA  MET    43      -1.493  21.927 -25.142  1.00  0.00              
ATOM     44  CA  VAL    44      -2.087  18.413 -26.567  1.00  0.00              
ATOM     45  CA  GLY    45       1.231  18.487 -28.354  1.00  0.00              
ATOM     46  CA  GLU    46       2.972  19.453 -25.087  1.00  0.00              
ATOM     47  CA  MET    47       1.164  16.634 -23.282  1.00  0.00              
ATOM     48  CA  ASN    48       2.266  14.182 -26.026  1.00  0.00              
ATOM     49  CA  LYS    49       5.858  15.218 -25.495  1.00  0.00              
ATOM     50  CA  LEU    50       5.448  14.654 -21.714  1.00  0.00              
ATOM     51  CA  LEU    51       3.950  11.169 -22.324  1.00  0.00              
ATOM     52  CA  GLU    52       6.782  10.260 -24.664  1.00  0.00              
ATOM     53  CA  PRO    53       9.379  11.300 -22.106  1.00  0.00              
ATOM     54  CA  SER    54       7.652   9.265 -19.345  1.00  0.00              
ATOM     55  CA  GLN    55       7.461   6.208 -21.544  1.00  0.00              
ATOM     56  CA  VAL    56      11.127   6.231 -22.469  1.00  0.00              
ATOM     57  CA  HIS    57      12.194   6.496 -18.855  1.00  0.00              
ATOM     58  CA  LEU    58       9.965   4.237 -16.765  1.00  0.00              
ATOM     59  CA  LYS    59       9.595   4.938 -13.095  1.00  0.00              
ATOM     60  CA  PHE    60       8.638   1.882 -10.968  1.00  0.00              
ATOM     61  CA  GLU    61       6.751   2.544  -7.227  1.00  0.00              
ATOM     62  CA  LEU    62       6.675  -0.299  -4.978  1.00  0.00              
ATOM     63  CA  HIS    63       3.935  -0.651  -2.569  1.00  0.00              
ATOM     64  CA  ASP    64       4.637  -2.425   0.652  1.00  0.00              
ATOM     65  CA  LYS    65       2.753   0.002   2.879  1.00  0.00              
ATOM     66  CA  LEU    66      -0.431   0.029   0.774  1.00  0.00              
ATOM     67  CA  ASN    67      -0.212  -3.728   0.190  1.00  0.00              
ATOM     68  CA  GLU    68      -0.332  -3.376  -3.612  1.00  0.00              
ATOM     69  CA  TYR    69       2.735  -4.427  -5.584  1.00  0.00              
ATOM     70  CA  TYR    70       4.088  -2.157  -8.234  1.00  0.00              
ATOM     71  CA  VAL    71       7.365  -2.867  -9.784  1.00  0.00              
ATOM     72  CA  LYS    72       9.225   0.197 -11.406  1.00  0.00              
ATOM     73  CA  VAL    73      11.864  -0.364 -13.816  1.00  0.00              
ATOM     74  CA  ILE    74      13.925   2.616 -14.255  1.00  0.00              
ATOM     75  CA  GLU    75      16.202   3.051 -17.205  1.00  0.00              
ATOM     76  CA  ASP    76      17.663   6.506 -17.655  1.00  0.00              
ATOM     77  CA  SER    77      21.187   6.079 -16.458  1.00  0.00              
ATOM     78  CA  THR    78      22.027   2.998 -18.472  1.00  0.00              
ATOM     79  CA  ASN    79      19.482   3.168 -21.353  1.00  0.00              
ATOM     80  CA  GLU    80      18.743  -0.422 -21.369  1.00  0.00              
ATOM     81  CA  VAL    81      15.034  -0.900 -21.217  1.00  0.00              
ATOM     82  CA  ILE    82      14.060   1.787 -23.659  1.00  0.00              
ATOM     83  CA  ARG    83      16.383   0.605 -26.372  1.00  0.00              
ATOM     84  CA  GLU    84      15.283  -3.030 -26.126  1.00  0.00              
ATOM     85  CA  ILE    85      11.705  -2.278 -26.146  1.00  0.00              
ATOM     86  CA  PRO    86       9.366  -2.229 -29.057  1.00  0.00              
ATOM     87  CA  PRO    87       7.103   0.780 -28.845  1.00  0.00              
ATOM     88  CA  LYS    88       4.007  -1.318 -28.205  1.00  0.00              
ATOM     89  CA  ARG    89       5.668  -3.071 -25.314  1.00  0.00              
ATOM     90  CA  TRP    90       6.640   0.267 -23.749  1.00  0.00              
ATOM     91  CA  LEU    91       2.946   1.247 -23.870  1.00  0.00              
ATOM     92  CA  ASP    92       2.085  -2.070 -22.218  1.00  0.00              
ATOM     93  CA  PHE    93       4.657  -1.475 -19.431  1.00  0.00              
ATOM     94  CA  TYR    94       3.218   2.044 -18.882  1.00  0.00              
ATOM     95  CA  ALA    95      -0.357   0.661 -18.681  1.00  0.00              
ATOM     96  CA  ALA    96       0.834  -1.959 -16.177  1.00  0.00              
ATOM     97  CA  MET    97       2.521   0.655 -14.063  1.00  0.00              
ATOM     98  CA  THR    98      -0.671   2.804 -14.056  1.00  0.00              
ATOM     99  CA  GLU    99      -2.698  -0.108 -12.752  1.00  0.00              
ATOM    100  CA  PHE   100      -0.140  -0.721  -9.991  1.00  0.00              
ATOM    101  CA  LEU   101       0.465   2.858  -8.779  1.00  0.00              
ATOM    102  CA  GLY   102      -3.302   3.328  -8.695  1.00  0.00              
ATOM    103  CA  LEU   103      -3.588   0.228  -6.423  1.00  0.00              
ATOM    104  CA  PHE   104      -0.938   1.308  -3.959  1.00  0.00              
ATOM    105  CA  VAL   105      -1.564   4.907  -3.450  1.00  0.00              
ATOM    106  CA  ASP   106      -4.426   7.088  -2.376  1.00  0.00              
ATOM    107  CA  GLU   107      -3.374  10.573  -3.604  1.00  0.00              
ATOM    108  CA  LYS   108      -3.241  12.066  -0.129  1.00  0.00              
ATOM    109  CA  LYS   109      -1.099   9.255   1.218  1.00  0.00              
ATOM    110  CA  LEU   110       1.307   9.297  -1.778  1.00  0.00              
ATOM    111  CA  GLU   111       1.716  13.054  -1.522  1.00  0.00              
ATOM    112  CA  HIS   112       2.434  12.858   2.190  1.00  0.00              
ATOM    113  CA  HIS   113       5.010  10.083   1.792  1.00  0.00              
ATOM    114  CA  HIS   114       7.210  12.228  -0.446  1.00  0.00              
ATOM    115  CA  HIS   115       7.135  10.863  -3.767  1.00  0.00              
ATOM    116  CA  HIS   116       8.661   8.629  -6.942  1.00  0.00              
ATOM    117  CA  HIS   117       8.874   4.525  -7.569  1.00  0.00              
TER                                                                             
END
