
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS599_4
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS599_4.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        45 - 81          4.91    27.39
  LONGEST_CONTINUOUS_SEGMENT:    37        46 - 82          4.86    27.35
  LCS_AVERAGE:     30.86

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        34 - 55          1.44    22.06
  LONGEST_CONTINUOUS_SEGMENT:    22        84 - 105         1.97    26.17
  LONGEST_CONTINUOUS_SEGMENT:    22        85 - 106         1.93    25.74
  LCS_AVERAGE:     13.92

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        35 - 52          0.76    22.46
  LCS_AVERAGE:     10.06

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      0    6   20     0    0    0    0    5    8    8   11   12   18   20   23   26   28   31   35   38   42   44   48 
LCS_GDT     N       2     N       2      5    6   20     0    5    5    5    8   10   14   16   18   19   19   23   25   28   31   35   38   42   44   48 
LCS_GDT     I       3     I       3      5    6   20     4    5    5    5    7    9   14   16   18   19   19   23   25   28   31   35   38   41   44   46 
LCS_GDT     E       4     E       4      5    6   20     4    5    5    5    6    6    7   10   13   16   18   22   22   23   25   28   30   37   39   41 
LCS_GDT     R       5     R       5      5    6   20     4    5    5    5    6    6    8   11   12   13   14   19   22   23   24   26   29   34   40   43 
LCS_GDT     L       6     L       6      5    6   20     4    5    5    5    8   10   14   16   18   19   19   22   23   28   31   35   36   40   44   46 
LCS_GDT     T       7     T       7      3   10   20     3    3    3    5    6    6   10   11   13   17   18   22   22   26   27   29   32   37   39   40 
LCS_GDT     T       8     T       8      3   10   20     3    3    3    4    9    9   10   11   12   14   18   22   22   23   27   29   33   37   39   43 
LCS_GDT     L       9     L       9      8   10   21     7    8    8    8    9   10   14   16   18   19   19   23   25   28   31   35   38   42   44   48 
LCS_GDT     Q      10     Q      10      8   10   21     7    8    8    8    9   10   14   16   18   19   19   23   25   28   31   35   38   42   44   48 
LCS_GDT     P      11     P      11      8   10   21     7    8    8    8    9   10   14   16   18   19   19   23   25   28   31   35   38   42   44   48 
LCS_GDT     V      12     V      12      8   10   21     7    8    8    8    9   10   14   16   18   19   19   22   24   28   31   35   38   42   44   48 
LCS_GDT     W      13     W      13      8   10   21     7    8    8    8    9   10   14   16   18   19   19   22   22   28   31   35   38   42   44   48 
LCS_GDT     D      14     D      14      8   10   21     7    8    8    8    9   10   14   16   18   19   19   22   22   28   31   35   38   42   44   48 
LCS_GDT     R      15     R      15      8   10   21     7    8    8    8    9   10   14   16   18   19   19   22   22   28   31   35   38   42   44   48 
LCS_GDT     Y      16     Y      16      8   10   21     6    8    8    8    9   10   14   16   18   19   19   22   22   26   28   30   32   37   43   46 
LCS_GDT     D      17     D      17      8   10   21     6    8    8    8    8    9   12   16   18   19   22   25   28   32   33   40   41   42   44   48 
LCS_GDT     T      18     T      18      8    9   21     6    8    8    8    8    9   10   13   14   18   23   25   28   32   36   40   41   42   44   48 
LCS_GDT     Q      19     Q      19      8    9   21     6    8    8    8    8    9   14   16   18   19   22   25   28   32   36   40   41   42   44   48 
LCS_GDT     I      20     I      20      8    9   36     6    8    8    8    8    9   10   12   13   16   22   25   29   34   36   40   41   42   44   48 
LCS_GDT     H      21     H      21      8    9   36     6    8    8   12   16   19   21   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     N      22     N      22      8    9   36     4    8    8    8    8   15   18   20   23   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     Q      23     Q      23      8    9   36     4    8    8   12   16   19   21   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     K      24     K      24      3    4   36     3    3    4    4    9   11   15   21   26   27   28   30   32   34   36   40   41   43   44   47 
LCS_GDT     D      25     D      25      3    4   36     3    3    3    5   11   13   13   17   19   24   26   27   31   34   36   38   40   43   44   47 
LCS_GDT     N      26     N      26      3    4   36     3    3    4    5    5   11   12   19   22   24   26   29   32   34   36   39   41   43   44   48 
LCS_GDT     D      27     D      27      3    4   36     3    3    5    8   11   12   18   21   23   24   27   30   32   34   36   40   41   43   44   48 
LCS_GDT     N      28     N      28      3    4   36     3    3    5    8   11   12   18   20   20   21   24   25   29   31   33   36   40   43   44   47 
LCS_GDT     E      29     E      29      3    4   36     3    3    3    3    7    9   18   19   19   22   23   24   26   27   28   32   39   43   44   47 
LCS_GDT     V      30     V      30      3    4   36     3    3    3    4    6    8   10   14   22   23   25   29   32   34   36   40   41   43   44   48 
LCS_GDT     P      31     P      31      3    3   36     3    3    6    8   14   18   21   22   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     V      32     V      32      3    3   36     3    3    3    4    7   17   19   21   23   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     H      33     H      33      3    3   36     3    6    8   14   16   19   21   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     Q      34     Q      34      3   22   36     3    8   13   18   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     V      35     V      35     18   22   36     7   17   18   19   22   22   22   22   23   25   27   29   31   34   36   40   41   43   44   48 
LCS_GDT     S      36     S      36     18   22   36     7   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     Y      37     Y      37     18   22   36     5   17   18   19   22   22   22   22   26   26   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     T      38     T      38     18   22   36     7   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     N      39     N      39     18   22   36     5   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     L      40     L      40     18   22   36     5   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     A      41     A      41     18   22   36     6   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     E      42     E      42     18   22   36     6   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     M      43     M      43     18   22   36     7   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     V      44     V      44     18   22   36     7   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     G      45     G      45     18   22   37     7   17   18   19   22   22   22   23   26   27   28   30   32   34   36   40   41   43   44   48 
LCS_GDT     E      46     E      46     18   22   37     7   17   18   19   22   22   22   23   26   27   29   32   33   35   36   40   41   43   44   48 
LCS_GDT     M      47     M      47     18   22   37     7   17   18   19   22   22   22   23   26   27   29   32   33   35   36   40   41   43   44   48 
LCS_GDT     N      48     N      48     18   22   37     7   17   18   19   22   22   22   23   26   27   29   31   33   35   36   40   41   43   44   48 
LCS_GDT     K      49     K      49     18   22   37     7   17   18   19   22   22   22   23   26   27   29   32   33   35   36   40   41   43   44   48 
LCS_GDT     L      50     L      50     18   22   37     7   17   18   19   22   22   22   23   26   27   29   32   33   35   36   40   41   43   44   48 
LCS_GDT     L      51     L      51     18   22   37     4   17   18   19   22   22   22   23   26   27   29   32   35   37   40   41   43   45   46   48 
LCS_GDT     E      52     E      52     18   22   37     6   16   18   19   22   22   22   23   26   27   29   33   35   37   40   41   43   45   46   48 
LCS_GDT     P      53     P      53     14   22   37     4    7   13   19   22   22   22   23   26   27   28   30   34   37   40   41   43   45   46   47 
LCS_GDT     S      54     S      54     14   22   37     4    6   11   19   22   22   22   23   26   30   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     Q      55     Q      55      5   22   37     3    4    5   19   22   22   22   23   26   29   30   35   36   37   40   41   43   45   46   47 
LCS_GDT     V      56     V      56      9   11   37     5    8    9    9   11   15   16   19   25   26   29   32   33   35   40   41   43   45   46   47 
LCS_GDT     H      57     H      57      9   11   37     5    8    9   12   16   17   20   22   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     L      58     L      58      9   11   37     5    8    9    9   18   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     K      59     K      59      9   11   37     5    8    9   17   19   22   22   24   25   26   29   32   33   36   39   41   43   45   46   47 
LCS_GDT     F      60     F      60      9   11   37     5    8    9    9   11   15   16   19   25   26   29   32   33   35   36   37   38   43   44   47 
LCS_GDT     E      61     E      61      9   11   37     5    8    9    9   11   15   16   18   19   25   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     L      62     L      62      9   11   37     5    8    9    9   11   15   17   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     H      63     H      63      9   17   37     3    8    9    9   11   15   18   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     D      64     D      64      9   17   37     3    5    9    9   15   15   18   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     K      65     K      65      3   17   37     3    3    6    7   11   15   18   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     L      66     L      66     14   17   37     4   10   13   14   15   15   18   20   22   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     N      67     N      67     14   17   37     3   10   13   14   15   15   18   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     E      68     E      68     14   17   37     4   10   13   14   15   15   18   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     Y      69     Y      69     14   17   37     3    8   12   14   15   15   18   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     Y      70     Y      70     14   17   37     4    9   13   14   15   15   18   20   25   26   29   32   33   35   36   36   38   40   42   43 
LCS_GDT     V      71     V      71     14   17   37     4   10   13   14   15   15   18   20   21   25   28   32   33   35   36   36   38   40   42   43 
LCS_GDT     K      72     K      72     14   17   37     6   10   13   14   15   15   18   20   25   26   29   32   33   35   36   36   38   40   42   44 
LCS_GDT     V      73     V      73     14   17   37     7   10   13   14   15   15   18   20   20   23   28   32   33   36   39   41   43   45   46   47 
LCS_GDT     I      74     I      74     14   17   37     7   10   13   14   15   15   18   20   25   30   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     E      75     E      75     14   17   37     7   10   13   14   15   15   18   21   25   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     D      76     D      76     14   17   37     7   10   13   14   15   15   18   20   25   27   30   35   36   37   40   41   43   45   46   47 
LCS_GDT     S      77     S      77     14   17   37     7   10   13   14   15   15   18   20   25   26   29   32   33   36   37   38   43   45   46   47 
LCS_GDT     T      78     T      78     14   17   37     7   10   13   14   15   15   18   20   25   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     N      79     N      79     14   17   37     7   10   13   14   15   15   18   20   25   26   29   32   36   37   40   41   43   45   46   47 
LCS_GDT     E      80     E      80      4   17   37     3    3    5    7    8    9   14   22   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     V      81     V      81      4    7   37     3    3    5    6    7   11   21   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     I      82     I      82      4    6   37     3    4    5    7    7   11   12   18   25   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     R      83     R      83      4   13   36     3    4    5    6    6    9   15   18   25   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     E      84     E      84      8   22   36     3    7    8   12   16   19   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     I      85     I      85      8   22   36     4    7   10   14   18   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     P      86     P      86      9   22   36     4    7   11   15   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     P      87     P      87      9   22   36     4    7   13   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     K      88     K      88     14   22   36     4    7   10   15   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     R      89     R      89     17   22   36     9   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     W      90     W      90     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     L      91     L      91     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     D      92     D      92     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     F      93     F      93     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     Y      94     Y      94     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     A      95     A      95     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     A      96     A      96     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     M      97     M      97     17   22   36     9   13   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     T      98     T      98     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     E      99     E      99     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     F     100     F     100     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   47 
LCS_GDT     L     101     L     101     17   22   36    10   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   48 
LCS_GDT     G     102     G     102     17   22   36     5   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   48 
LCS_GDT     L     103     L     103     17   22   36     5   14   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   44   46   48 
LCS_GDT     F     104     F     104     17   22   36     5   12   16   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   48 
LCS_GDT     V     105     V     105     17   22   36     5   10   14   17   19   22   23   24   27   31   32   35   36   37   40   41   43   45   46   48 
LCS_GDT     D     106     D     106      6   22   36     5    5    6   11   15   18   21   24   27   31   32   35   36   37   40   41   43   45   46   48 
LCS_GDT     E     107     E     107      5    6   36     5    5    6    6    8    9   14   16   21   28   31   33   35   37   40   41   43   45   46   47 
LCS_GDT     K     108     K     108      5    6   36     5    5    6    6    8    9   14   16   18   21   24   27   35   37   40   41   43   45   46   47 
LCS_GDT     K     109     K     109      5    6   33     5    5    6    6    8    9   14   16   18   21   23   24   25   35   39   41   43   45   46   48 
LCS_AVERAGE  LCS_A:  18.28  (  10.06   13.92   30.86 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     17     18     19     22     22     23     24     27     31     32     35     36     37     40     41     43     45     46     48 
GDT PERCENT_CA   9.17  15.60  16.51  17.43  20.18  20.18  21.10  22.02  24.77  28.44  29.36  32.11  33.03  33.94  36.70  37.61  39.45  41.28  42.20  44.04
GDT RMS_LOCAL    0.28   0.68   0.76   1.00   1.44   1.44   2.02   2.22   2.86   3.55   3.63   3.99   4.08   4.26   4.68   4.79   5.12   5.56   5.59   7.05
GDT RMS_ALL_CA  25.74  22.53  22.46  22.58  22.06  22.06  26.34  26.35  26.51  26.94  26.96  27.11  27.10  26.88  26.56  26.59  26.50  26.25  26.27  21.44

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         12.032
LGA    N       2      N       2         11.742
LGA    I       3      I       3         17.109
LGA    E       4      E       4         19.194
LGA    R       5      R       5         20.850
LGA    L       6      L       6         23.627
LGA    T       7      T       7         29.069
LGA    T       8      T       8         29.485
LGA    L       9      L       9         29.799
LGA    Q      10      Q      10         34.059
LGA    P      11      P      11         32.851
LGA    V      12      V      12         33.519
LGA    W      13      W      13         38.265
LGA    D      14      D      14         40.613
LGA    R      15      R      15         40.034
LGA    Y      16      Y      16         42.804
LGA    D      17      D      17         44.582
LGA    T      18      T      18         46.728
LGA    Q      19      Q      19         44.780
LGA    I      20      I      20         43.300
LGA    H      21      H      21         46.601
LGA    N      22      N      22         48.725
LGA    Q      23      Q      23         45.583
LGA    K      24      K      24         42.556
LGA    D      25      D      25         46.342
LGA    N      26      N      26         44.769
LGA    D      27      D      27         38.926
LGA    N      28      N      28         36.196
LGA    E      29      E      29         38.376
LGA    V      30      V      30         38.977
LGA    P      31      P      31         36.180
LGA    V      32      V      32         41.590
LGA    H      33      H      33         45.889
LGA    Q      34      Q      34         48.266
LGA    V      35      V      35         44.933
LGA    S      36      S      36         48.366
LGA    Y      37      Y      37         45.551
LGA    T      38      T      38         43.675
LGA    N      39      N      39         40.855
LGA    L      40      L      40         36.376
LGA    A      41      A      41         33.451
LGA    E      42      E      42         33.183
LGA    M      43      M      43         28.973
LGA    V      44      V      44         25.405
LGA    G      45      G      45         23.798
LGA    E      46      E      46         22.080
LGA    M      47      M      47         17.977
LGA    N      48      N      48         15.095
LGA    K      49      K      49         14.472
LGA    L      50      L      50         12.435
LGA    L      51      L      51          8.370
LGA    E      52      E      52          7.480
LGA    P      53      P      53          9.036
LGA    S      54      S      54          7.075
LGA    Q      55      Q      55         10.517
LGA    V      56      V      56         11.168
LGA    H      57      H      57          5.371
LGA    L      58      L      58          2.630
LGA    K      59      K      59          6.118
LGA    F      60      F      60          9.742
LGA    E      61      E      61         16.387
LGA    L      62      L      62         20.360
LGA    H      63      H      63         26.456
LGA    D      64      D      64         30.112
LGA    K      65      K      65         33.605
LGA    L      66      L      66         38.474
LGA    N      67      N      67         37.716
LGA    E      68      E      68         33.410
LGA    Y      69      Y      69         28.307
LGA    Y      70      Y      70         22.692
LGA    V      71      V      71         16.629
LGA    K      72      K      72         12.967
LGA    V      73      V      73          8.667
LGA    I      74      I      74          6.153
LGA    E      75      E      75          7.966
LGA    D      76      D      76         10.835
LGA    S      77      S      77         13.459
LGA    T      78      T      78          9.226
LGA    N      79      N      79          8.287
LGA    E      80      E      80          5.731
LGA    V      81      V      81          3.964
LGA    I      82      I      82          7.272
LGA    R      83      R      83          7.153
LGA    E      84      E      84          3.307
LGA    I      85      I      85          2.586
LGA    P      86      P      86          1.978
LGA    P      87      P      87          1.495
LGA    K      88      K      88          2.101
LGA    R      89      R      89          2.179
LGA    W      90      W      90          2.777
LGA    L      91      L      91          2.969
LGA    D      92      D      92          1.696
LGA    F      93      F      93          1.278
LGA    Y      94      Y      94          2.154
LGA    A      95      A      95          1.983
LGA    A      96      A      96          1.331
LGA    M      97      M      97          0.969
LGA    T      98      T      98          1.251
LGA    E      99      E      99          2.033
LGA    F     100      F     100          2.023
LGA    L     101      L     101          1.883
LGA    G     102      G     102          1.788
LGA    L     103      L     103          2.685
LGA    F     104      F     104          3.450
LGA    V     105      V     105          3.433
LGA    D     106      D     106          4.899
LGA    E     107      E     107          8.736
LGA    K     108      K     108         13.004
LGA    K     109      K     109         13.863

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     24    2.22    23.165    21.262     1.036

LGA_LOCAL      RMSD =  2.215  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 26.510  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 16.809  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.878229 * X  +  -0.397687 * Y  +  -0.265630 * Z  +   2.675117
  Y_new =  -0.471120 * X  +   0.623934 * Y  +   0.623500 * Z  +   8.706646
  Z_new =  -0.082223 * X  +   0.672719 * Y  +  -0.735315 * Z  +  -6.138134 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.400622   -0.740971  [ DEG:   137.5455    -42.4545 ]
  Theta =   0.082316    3.059277  [ DEG:     4.7163    175.2837 ]
  Phi   =  -2.649218    0.492375  [ DEG:  -151.7890     28.2110 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS599_4                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS599_4.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   24   2.22  21.262    16.81
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS599_4
PFRMAT TS                                                                       
TARGET T0350                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      -9.836   1.429  -5.003  1.00  0.00              
ATOM      2  CA  ASN     2      -6.802   4.169  -4.038  1.00  0.00              
ATOM      3  CA  ILE     3     -10.892   3.473  -4.722  1.00  0.00              
ATOM      4  CA  GLU     4     -10.171   5.268  -1.682  1.00  0.00              
ATOM      5  CA  ARG     5      -9.594   8.679  -3.305  1.00  0.00              
ATOM      6  CA  LEU     6     -12.861   8.669  -5.265  1.00  0.00              
ATOM      7  CA  THR     7     -15.038   7.756  -2.264  1.00  0.00              
ATOM      8  CA  THR     8     -13.471  10.478  -0.116  1.00  0.00              
ATOM      9  CA  LEU     9     -13.961  13.181  -2.774  1.00  0.00              
ATOM     10  CA  GLN    10     -17.639  12.152  -3.219  1.00  0.00              
ATOM     11  CA  PRO    11     -18.277  12.490   0.554  1.00  0.00              
ATOM     12  CA  VAL    12     -16.624  15.884   0.405  1.00  0.00              
ATOM     13  CA  TRP    13     -18.827  16.823  -2.595  1.00  0.00              
ATOM     14  CA  ASP    14     -21.845  16.058  -0.451  1.00  0.00              
ATOM     15  CA  ARG    15     -20.538  18.154   2.492  1.00  0.00              
ATOM     16  CA  TYR    16     -20.142  21.481   1.015  1.00  0.00              
ATOM     17  CA  ASP    17     -17.062  22.318  -0.918  1.00  0.00              
ATOM     18  CA  THR    18     -15.743  24.779   1.722  1.00  0.00              
ATOM     19  CA  GLN    19     -16.139  22.087   4.394  1.00  0.00              
ATOM     20  CA  ILE    20     -14.248  19.499   2.322  1.00  0.00              
ATOM     21  CA  HIS    21     -11.385  21.893   1.550  1.00  0.00              
ATOM     22  CA  ASN    22     -11.167  22.595   5.267  1.00  0.00              
ATOM     23  CA  GLN    23     -11.139  18.857   6.065  1.00  0.00              
ATOM     24  CA  LYS    24      -8.308  18.252   3.566  1.00  0.00              
ATOM     25  CA  ASP    25      -6.335  21.158   5.148  1.00  0.00              
ATOM     26  CA  ASN    26      -6.705  19.696   8.625  1.00  0.00              
ATOM     27  CA  ASP    27      -5.645  16.256   7.286  1.00  0.00              
ATOM     28  CA  ASN    28      -2.488  17.886   6.100  1.00  0.00              
ATOM     29  CA  GLU    29      -1.531  20.090   8.968  1.00  0.00              
ATOM     30  CA  VAL    30      -1.822  17.265  11.585  1.00  0.00              
ATOM     31  CA  PRO    31       0.292  15.134   9.309  1.00  0.00              
ATOM     32  CA  VAL    32       2.973  17.806   9.360  1.00  0.00              
ATOM     33  CA  HIS    33       2.713  18.368  13.169  1.00  0.00              
ATOM     34  CA  GLN    34       2.905  14.650  13.956  1.00  0.00              
ATOM     35  CA  VAL    35       6.133  14.607  11.827  1.00  0.00              
ATOM     36  CA  SER    36       7.852  17.757  13.173  1.00  0.00              
ATOM     37  CA  TYR    37       8.238  20.787  10.875  1.00  0.00              
ATOM     38  CA  THR    38      11.970  20.423  10.610  1.00  0.00              
ATOM     39  CA  ASN    39      11.641  16.739   9.757  1.00  0.00              
ATOM     40  CA  LEU    40       9.002  17.479   7.090  1.00  0.00              
ATOM     41  CA  ALA    41      11.200  20.118   5.516  1.00  0.00              
ATOM     42  CA  GLU    42      14.106  17.607   5.485  1.00  0.00              
ATOM     43  CA  MET    43      11.812  14.992   3.859  1.00  0.00              
ATOM     44  CA  VAL    44      10.775  17.547   1.183  1.00  0.00              
ATOM     45  CA  GLY    45      14.404  18.344   0.345  1.00  0.00              
ATOM     46  CA  GLU    46      15.139  14.600   0.103  1.00  0.00              
ATOM     47  CA  MET    47      12.090  14.148  -2.215  1.00  0.00              
ATOM     48  CA  ASN    48      13.239  17.028  -4.390  1.00  0.00              
ATOM     49  CA  LYS    49      16.698  15.367  -4.684  1.00  0.00              
ATOM     50  CA  LEU    50      15.005  12.073  -5.579  1.00  0.00              
ATOM     51  CA  LEU    51      12.880  13.803  -8.278  1.00  0.00              
ATOM     52  CA  GLU    52      15.989  15.402  -9.800  1.00  0.00              
ATOM     53  CA  PRO    53      17.568  11.920  -9.970  1.00  0.00              
ATOM     54  CA  SER    54      14.410  10.463 -11.546  1.00  0.00              
ATOM     55  CA  GLN    55      14.138  13.166 -14.132  1.00  0.00              
ATOM     56  CA  VAL    56      17.791  12.656 -15.254  1.00  0.00              
ATOM     57  CA  HIS    57      17.215   9.011 -16.160  1.00  0.00              
ATOM     58  CA  LEU    58      14.746   7.243 -14.059  1.00  0.00              
ATOM     59  CA  LYS    59      14.165   3.516 -14.111  1.00  0.00              
ATOM     60  CA  PHE    60      10.609   2.537 -12.773  1.00  0.00              
ATOM     61  CA  GLU    61       9.785  -0.990 -11.296  1.00  0.00              
ATOM     62  CA  LEU    62       6.140  -1.687 -10.717  1.00  0.00              
ATOM     63  CA  HIS    63       5.073  -4.012  -8.085  1.00  0.00              
ATOM     64  CA  ASP    64       1.861  -5.851  -8.628  1.00  0.00              
ATOM     65  CA  LYS    65       2.977  -9.245  -7.289  1.00  0.00              
ATOM     66  CA  LEU    66       4.414  -7.974  -4.059  1.00  0.00              
ATOM     67  CA  ASN    67       1.564  -5.496  -3.569  1.00  0.00              
ATOM     68  CA  GLU    68       3.996  -2.598  -3.281  1.00  0.00              
ATOM     69  CA  TYR    69       3.696   0.264  -5.699  1.00  0.00              
ATOM     70  CA  TYR    70       6.766   1.625  -7.357  1.00  0.00              
ATOM     71  CA  VAL    71       6.355   4.101 -10.138  1.00  0.00              
ATOM     72  CA  LYS    72       9.310   4.268 -12.674  1.00  0.00              
ATOM     73  CA  VAL    73       9.714   7.100 -14.949  1.00  0.00              
ATOM     74  CA  ILE    74      11.653   6.178 -17.980  1.00  0.00              
ATOM     75  CA  GLU    75      13.567   8.749 -19.958  1.00  0.00              
ATOM     76  CA  ASP    76      13.448   8.574 -23.713  1.00  0.00              
ATOM     77  CA  SER    77      17.109   9.581 -24.122  1.00  0.00              
ATOM     78  CA  THR    78      18.673   6.743 -22.127  1.00  0.00              
ATOM     79  CA  ASN    79      15.677   4.420 -22.661  1.00  0.00              
ATOM     80  CA  GLU    80      17.503   1.613 -24.375  1.00  0.00              
ATOM     81  CA  VAL    81      15.201  -1.194 -23.128  1.00  0.00              
ATOM     82  CA  ILE    82      12.104   0.817 -24.124  1.00  0.00              
ATOM     83  CA  ARG    83      13.546   1.474 -27.569  1.00  0.00              
ATOM     84  CA  GLU    84      13.859  -2.267 -28.254  1.00  0.00              
ATOM     85  CA  ILE    85      10.356  -3.097 -27.245  1.00  0.00              
ATOM     86  CA  PRO    86       7.531  -3.307 -29.791  1.00  0.00              
ATOM     87  CA  PRO    87       5.233  -0.245 -29.501  1.00  0.00              
ATOM     88  CA  LYS    88       2.365  -2.382 -28.273  1.00  0.00              
ATOM     89  CA  ARG    89       4.485  -3.887 -25.537  1.00  0.00              
ATOM     90  CA  TRP    90       5.740  -0.485 -24.283  1.00  0.00              
ATOM     91  CA  LEU    91       2.231   0.862 -24.119  1.00  0.00              
ATOM     92  CA  ASP    92       1.211  -2.234 -22.213  1.00  0.00              
ATOM     93  CA  PHE    93       4.030  -1.954 -19.706  1.00  0.00              
ATOM     94  CA  TYR    94       3.162   1.722 -19.114  1.00  0.00              
ATOM     95  CA  ALA    95      -0.532   0.896 -18.612  1.00  0.00              
ATOM     96  CA  ALA    96       0.220  -1.871 -16.198  1.00  0.00              
ATOM     97  CA  MET    97       2.492   0.435 -14.159  1.00  0.00              
ATOM     98  CA  THR    98      -0.141   3.094 -14.096  1.00  0.00              
ATOM     99  CA  GLU    99      -2.891   0.780 -12.866  1.00  0.00              
ATOM    100  CA  PHE   100      -0.681  -0.522 -10.046  1.00  0.00              
ATOM    101  CA  LEU   101       0.419   2.912  -8.808  1.00  0.00              
ATOM    102  CA  GLY   102      -3.229   4.032  -8.736  1.00  0.00              
ATOM    103  CA  LEU   103      -4.076   0.929  -6.719  1.00  0.00              
ATOM    104  CA  PHE   104      -1.553   1.497  -3.900  1.00  0.00              
ATOM    105  CA  VAL   105      -1.890   5.207  -3.367  1.00  0.00              
ATOM    106  CA  ASP   106      -2.396   6.731   0.127  1.00  0.00              
ATOM    107  CA  GLU   107      -0.657  10.059  -0.198  1.00  0.00              
ATOM    108  CA  LYS   108       0.753   9.948   3.338  1.00  0.00              
ATOM    109  CA  LYS   109       2.306   6.542   2.777  1.00  0.00              
ATOM    110  CA  LEU   110       3.946   7.546  -0.463  1.00  0.00              
ATOM    111  CA  GLU   111       5.484  10.637   1.027  1.00  0.00              
ATOM    112  CA  HIS   112       6.937   8.739   3.918  1.00  0.00              
ATOM    113  CA  HIS   113       8.487   5.970   1.832  1.00  0.00              
ATOM    114  CA  HIS   114      10.649   8.360  -0.145  1.00  0.00              
ATOM    115  CA  HIS   115       9.212   8.211  -3.684  1.00  0.00              
ATOM    116  CA  HIS   116       9.963   6.428  -7.460  1.00  0.00              
ATOM    117  CA  HIS   117       8.375   8.865  -9.570  1.00  0.00              
TER                                                                             
END
