
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS168_3
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS168_3.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43        66 - 108         4.97    15.44
  LCS_AVERAGE:     30.58

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         1 - 24          1.90    17.84
  LCS_AVERAGE:     13.67

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22         1 - 22          0.74    18.07
  LCS_AVERAGE:      9.39

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1     22   24   28     8   19   21   22   23   23   23   23   24   26   27   29   30   32   35   37   40   43   45   48 
LCS_GDT     T       2     T       2     22   24   28     3    6   19   22   23   23   23   23   24   26   27   29   30   32   35   37   40   43   45   48 
LCS_GDT     T       3     T       3     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   37   40   43   45   48 
LCS_GDT     H       4     H       4     22   24   28     8   19   21   22   23   23   23   23   24   26   27   29   30   32   35   37   40   43   45   48 
LCS_GDT     D       5     D       5     22   24   28    11   19   21   22   23   23   23   23   24   26   27   29   30   32   35   37   40   43   45   48 
LCS_GDT     R       6     R       6     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   37   40   45   48   50 
LCS_GDT     V       7     V       7     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   38   40   45   48   50 
LCS_GDT     R       8     R       8     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   37   40   43   48   50 
LCS_GDT     L       9     L       9     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   37   40   45   48   50 
LCS_GDT     Q      10     Q      10     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   38   40   51   53   56 
LCS_GDT     L      11     L      11     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   38   46   51   53   56 
LCS_GDT     Q      12     Q      12     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   38   40   45   48   56 
LCS_GDT     A      13     A      13     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   38   40   51   53   56 
LCS_GDT     L      14     L      14     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   31   41   44   48   51   54   55   57 
LCS_GDT     E      15     E      15     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   41   42   48   50   54   55   56 
LCS_GDT     A      16     A      16     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   42   46   51   54   56 
LCS_GDT     L      17     L      17     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   37   44   48   52   54   56 
LCS_GDT     L      18     L      18     22   24   28    12   19   21   22   23   23   23   23   24   26   27   32   38   41   45   48   51   54   55   57 
LCS_GDT     R      19     R      19     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   33   41   45   48   51   54   55   57 
LCS_GDT     E      20     E      20     22   24   28    12   19   21   22   23   23   23   23   24   26   27   29   30   32   35   38   46   51   53   56 
LCS_GDT     H      21     H      21     22   24   28    12   19   21   22   23   23   23   23   24   26   27   30   33   38   41   44   47   51   54   56 
LCS_GDT     Q      22     Q      22     22   24   28    12   19   21   22   23   23   23   23   24   26   30   36   38   41   45   48   51   54   55   57 
LCS_GDT     H      23     H      23      3   24   28     3    3    6   12   23   23   23   23   24   26   27   36   38   41   45   48   51   54   55   57 
LCS_GDT     W      24     W      24      3   24   28     3    3    4    8   10   12   14   18   21   25   30   36   38   41   45   48   51   54   55   57 
LCS_GDT     R      25     R      25      3    5   28     3    3    5    5    6    8    9   15   20   22   26   35   38   41   45   48   51   54   56   58 
LCS_GDT     N      26     N      26      3    6   28     3    3    5    5    6    8   10   11   21   22   24   28   34   41   45   48   51   54   55   57 
LCS_GDT     D      27     D      27      3    8   28     3    3    5    5    7    8   10   19   21   22   23   28   32   41   45   48   51   54   55   57 
LCS_GDT     E      28     E      28      4    8   28     3    3    5    5    7    8   10   14   15   22   23   28   33   41   45   48   51   54   55   57 
LCS_GDT     P      29     P      29      4    8   22     3    3    5    5    7    8   10   14   15   20   23   30   35   39   45   47   51   54   56   58 
LCS_GDT     Q      30     Q      30      5    8   22     3    4    5    5    8   12   16   20   21   23   24   32   37   43   47   50   52   55   58   59 
LCS_GDT     P      31     P      31      5    8   22     3    4    6    9   13   18   22   23   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     H      32     H      32      5    8   22     3    4    8   12   15   19   22   23   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     Q      33     Q      33      5    8   22     4    4    6    9   12   18   22   23   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     F      34     F      34      5    8   22     3    4    5    5    6    8   11   15   22   28   38   42   44   48   49   53   56   58   61   62 
LCS_GDT     N      35     N      35      4    5   22     3    3    4    5    6    8    9   14   22   26   35   42   44   48   50   53   56   58   61   62 
LCS_GDT     S      36     S      36      4    5   22     3    3    4    4    6    8    9   10   12   14   21   25   29   35   44   49   53   58   61   62 
LCS_GDT     T      37     T      37      4    5   22     3    3    4    4    5    8    9   13   17   20   22   26   29   35   42   49   53   57   61   62 
LCS_GDT     Q      38     Q      38      4    5   22     3    3    4    4    6    8    9   11   14   20   22   26   29   31   34   35   37   47   52   54 
LCS_GDT     P      39     P      39      4    9   22     3    3    4    5    8    9   10   13   14   15   17   19   22   26   32   33   36   38   39   39 
LCS_GDT     F      40     F      40      4    9   22     3    3    5    6    8    9   10   13   14   15   17   18   23   29   34   35   36   38   39   39 
LCS_GDT     F      41     F      41      4    9   22     3    3    4    6    8    9   10   13   14   19   22   26   29   31   34   35   36   47   52   54 
LCS_GDT     M      42     M      42      4    9   22     3    4    5    6    8    9   10   13   17   20   24   33   38   41   44   49   53   57   60   62 
LCS_GDT     D      43     D      43      4    9   22     3    4    5    6    8    9   10   13   14   15   17   21   27   31   37   47   52   57   60   62 
LCS_GDT     T      44     T      44      4    9   22     3    4    5    6    8    9   10   13   14   15   17   20   26   31   34   38   45   54   60   62 
LCS_GDT     M      45     M      45      4    9   22     3    4    5    5    7    9   10   13   14   20   22   31   38   42   44   49   53   57   60   62 
LCS_GDT     E      46     E      46      4    9   29     3    3    5    6    8    9   10   13   15   19   23   26   29   33   42   44   50   53   58   62 
LCS_GDT     P      47     P      47      4    9   29     3    3    5    6    8   13   17   22   24   27   30   35   39   42   43   46   50   53   58   62 
LCS_GDT     L      48     L      48      3    6   29     3    3    4    6    8   13   17   18   19   27   29   35   39   42   43   46   50   52   58   62 
LCS_GDT     E      49     E      49      5    6   29     3    4    5    5    6    7    9   12   14   17   25   30   34   39   39   42   44   46   52   54 
LCS_GDT     W      50     W      50      5    6   29     3    4    5    5    7    8   12   17   18   21   26   30   34   39   39   43   44   50   53   57 
LCS_GDT     L      51     L      51      5    6   29     3    4    5    5    7   12   16   19   24   27   30   35   39   42   43   46   50   53   58   62 
LCS_GDT     Q      52     Q      52      5    6   29     3    4    5    5    5    8   12   18   24   27   30   35   38   42   43   46   50   53   58   62 
LCS_GDT     W      53     W      53      5   13   29     3    3    5    5    9   12   16   18   19   23   26   33   38   42   44   48   53   57   60   62 
LCS_GDT     V      54     V      54      9   14   29     5    6    9   11   13   16   18   22   25   28   33   37   40   44   49   51   56   58   61   62 
LCS_GDT     L      55     L      55      9   14   29     5    6    9   11   13   16   18   22   25   28   33   37   40   46   49   51   56   58   61   62 
LCS_GDT     I      56     I      56      9   14   29     5    6    9   11   13   16   18   22   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     P      57     P      57      9   14   29     4    6    9   11   13   16   18   23   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     R      58     R      58      9   14   29     5    8    9   11   13   16   18   22   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     M      59     M      59      9   14   29     5    8    9   11   13   16   18   22   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     H      60     H      60      9   14   29     5    8    9   11   13   16   18   22   25   33   38   42   43   48   50   53   56   58   61   62 
LCS_GDT     D      61     D      61      9   14   29     5    8    9   11   13   16   18   22   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L      62     L      62      9   14   29     4    8    9   11   13   16   18   22   24   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L      63     L      63      9   14   29     4    8    9   11   13   13   15   17   24   27   29   35   39   43   47   51   56   58   61   62 
LCS_GDT     D      64     D      64      9   14   29     4    8    9   11   13   13   15   17   19   27   29   35   39   44   49   53   56   58   61   62 
LCS_GDT     N      65     N      65      9   14   33     5    8    9   11   13   13   16   22   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     K      66     K      66      4   14   43     3    3    4    7   11   18   22   23   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     Q      67     Q      67      4   14   43     3    3    9   10   13   15   18   22   25   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     P      68     P      68      4   13   43     3    3    6    9   12   15   19   23   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L      69     L      69      3   13   43     3    3    5    9   11   13   14   17   22   27   33   40   44   47   50   53   56   58   61   62 
LCS_GDT     P      70     P      70      3   11   43     3    3    4    9   12   14   19   23   29   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     G      71     G      71      3    7   43     3    3    4    9   12   14   18   23   27   33   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     A      72     A      72      3    7   43     3    3    4    6    7    8   16   20   26   30   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     F      73     F      73      3    7   43     4    4    6   12   16   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     A      74     A      74      3    7   43     3    3    4    4   13   20   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     V      75     V      75      3   10   43     3    3    4    6   13   20   26   32   34   34   35   42   44   48   50   53   56   58   61   62 
LCS_GDT     A      76     A      76      8   12   43     3    8    8   11   16   21   26   32   34   34   34   36   42   48   50   53   56   58   61   62 
LCS_GDT     P      77     P      77      8   12   43     7    8    8   11   15   20   25   30   34   34   34   37   43   48   49   53   56   58   61   62 
LCS_GDT     Y      78     Y      78      8   12   43     7    8    8   10   15   20   26   32   34   34   34   36   38   40   46   53   56   58   61   62 
LCS_GDT     Y      79     Y      79      8   12   43     7    8    8   11   16   21   26   32   34   34   34   36   38   48   50   53   56   58   61   62 
LCS_GDT     E      80     E      80      8   12   43     7    8    8   11   16   21   26   32   34   34   34   40   44   48   50   53   56   58   61   62 
LCS_GDT     M      81     M      81      8   12   43     7    8    8   11   15   21   26   32   34   34   34   37   44   48   50   53   56   58   61   62 
LCS_GDT     A      82     A      82      8   12   43     7    8    8   11   16   21   26   32   34   34   34   36   38   43   50   53   56   58   61   62 
LCS_GDT     L      83     L      83      8   12   43     7    8    8   10   14   21   26   32   34   34   34   36   38   45   50   53   56   58   61   62 
LCS_GDT     A      84     A      84      4   12   43     3    4    4    6   10   19   26   32   34   34   34   36   38   45   50   53   56   58   61   62 
LCS_GDT     T      85     T      85      4   12   43     3    4    6   10   15   21   26   32   34   34   34   36   38   40   47   53   56   58   61   62 
LCS_GDT     D      86     D      86      4   12   43     3    3    6   10   15   20   25   30   34   34   34   36   38   41   47   53   56   58   61   62 
LCS_GDT     H      87     H      87      4   20   43     3    3    4   11   16   21   26   32   34   34   34   36   40   48   50   53   56   58   61   62 
LCS_GDT     P      88     P      88     15   20   43     4    8   15   19   19   19   26   32   34   34   34   42   44   48   50   53   56   58   61   62 
LCS_GDT     Q      89     Q      89     15   20   43     4   13   16   19   19   21   26   32   34   34   35   42   44   48   50   53   56   58   61   62 
LCS_GDT     R      90     R      90     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     A      91     A      91     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L      92     L      92     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     I      93     I      93     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L      94     L      94     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     A      95     A      95     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     E      96     E      96     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L      97     L      97     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     E      98     E      98     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     K      99     K      99     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L     100     L     100     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     D     101     D     101     15   20   43     9   13   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     A     102     A     102     15   20   43     4   11   15   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     L     103     L     103     14   20   43     4    7   12   19   19   20   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     F     104     F     104     13   20   43     4    8   16   19   19   20   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     A     105     A     105     11   20   43     4   10   16   19   19   21   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     D     106     D     106     11   20   43     4    8   16   19   19   20   26   32   34   34   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     D     107     D     107      3   20   43     3    3    4    9   12   15   18   22   26   30   38   42   44   48   50   53   56   58   61   62 
LCS_GDT     A     108     A     108      3    3   43     3    3    4    6   12   14   18   21   25   27   33   36   39   43   47   53   56   58   61   62 
LCS_GDT     S     109     S     109      3    3   42     3    3    4    6   12   14   17   19   25   27   30   35   39   42   44   49   56   57   60   62 
LCS_AVERAGE  LCS_A:  17.88  (   9.39   13.67   30.58 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     19     21     22     23     23     26     32     34     34     38     42     44     48     50     53     56     58     61     62 
GDT PERCENT_CA  11.01  17.43  19.27  20.18  21.10  21.10  23.85  29.36  31.19  31.19  34.86  38.53  40.37  44.04  45.87  48.62  51.38  53.21  55.96  56.88
GDT RMS_LOCAL    0.27   0.54   0.64   0.74   1.07   1.07   2.50   2.83   2.96   2.96   3.86   4.20   4.41   4.75   5.12   5.37   5.60   5.74   5.99   6.07
GDT RMS_ALL_CA  18.06  18.04  18.03  18.07  18.00  18.00  19.26  18.19  18.35  18.35  14.38  14.25  14.17  14.28  14.24  14.42  14.32  14.29  14.35  14.40

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         37.289
LGA    T       2      T       2         32.714
LGA    T       3      T       3         26.750
LGA    H       4      H       4         30.152
LGA    D       5      D       5         32.860
LGA    R       6      R       6         26.884
LGA    V       7      V       7         23.178
LGA    R       8      R       8         28.573
LGA    L       9      L       9         28.866
LGA    Q      10      Q      10         22.089
LGA    L      11      L      11         21.803
LGA    Q      12      Q      12         26.436
LGA    A      13      A      13         24.282
LGA    L      14      L      14         18.295
LGA    E      15      E      15         21.492
LGA    A      16      A      16         25.309
LGA    L      17      L      17         21.227
LGA    L      18      L      18         17.329
LGA    R      19      R      19         22.187
LGA    E      20      E      20         24.033
LGA    H      21      H      21         18.596
LGA    Q      22      Q      22         18.042
LGA    H      23      H      23         20.493
LGA    W      24      W      24         21.114
LGA    R      25      R      25         20.980
LGA    N      26      N      26         27.846
LGA    D      27      D      27         31.804
LGA    E      28      E      28         31.712
LGA    P      29      P      29         28.320
LGA    Q      30      Q      30         23.795
LGA    P      31      P      31         20.192
LGA    H      32      H      32         15.608
LGA    Q      33      Q      33         17.297
LGA    F      34      F      34         20.555
LGA    N      35      N      35         15.933
LGA    S      36      S      36         16.937
LGA    T      37      T      37         15.765
LGA    Q      38      Q      38         18.273
LGA    P      39      P      39         23.222
LGA    F      40      F      40         22.296
LGA    F      41      F      41         22.976
LGA    M      42      M      42         21.563
LGA    D      43      D      43         25.164
LGA    T      44      T      44         28.306
LGA    M      45      M      45         26.687
LGA    E      46      E      46         30.872
LGA    P      47      P      47         29.336
LGA    L      48      L      48         27.085
LGA    E      49      E      49         29.532
LGA    W      50      W      50         27.856
LGA    L      51      L      51         24.258
LGA    Q      52      Q      52         20.737
LGA    W      53      W      53         17.924
LGA    V      54      V      54         16.878
LGA    L      55      L      55         15.580
LGA    I      56      I      56         11.699
LGA    P      57      P      57         12.902
LGA    R      58      R      58         14.755
LGA    M      59      M      59         12.983
LGA    H      60      H      60         13.111
LGA    D      61      D      61         15.006
LGA    L      62      L      62         15.206
LGA    L      63      L      63         14.034
LGA    D      64      D      64         14.018
LGA    N      65      N      65         16.622
LGA    K      66      K      66         13.382
LGA    Q      67      Q      67         19.160
LGA    P      68      P      68         15.584
LGA    L      69      L      69         17.054
LGA    P      70      P      70         11.298
LGA    G      71      G      71         10.067
LGA    A      72      A      72          8.900
LGA    F      73      F      73          3.097
LGA    A      74      A      74          3.803
LGA    V      75      V      75          3.043
LGA    A      76      A      76          1.824
LGA    P      77      P      77          4.201
LGA    Y      78      Y      78          3.522
LGA    Y      79      Y      79          1.763
LGA    E      80      E      80          2.229
LGA    M      81      M      81          2.028
LGA    A      82      A      82          2.290
LGA    L      83      L      83          3.738
LGA    A      84      A      84          3.230
LGA    T      85      T      85          3.987
LGA    D      86      D      86          4.616
LGA    H      87      H      87          3.212
LGA    P      88      P      88          3.801
LGA    Q      89      Q      89          0.637
LGA    R      90      R      90          3.388
LGA    A      91      A      91          2.938
LGA    L      92      L      92          0.975
LGA    I      93      I      93          2.963
LGA    L      94      L      94          3.482
LGA    A      95      A      95          1.689
LGA    E      96      E      96          1.231
LGA    L      97      L      97          3.358
LGA    E      98      E      98          2.972
LGA    K      99      K      99          1.442
LGA    L     100      L     100          1.724
LGA    D     101      D     101          2.605
LGA    A     102      A     102          2.863
LGA    L     103      L     103          3.927
LGA    F     104      F     104          3.196
LGA    A     105      A     105          0.592
LGA    D     106      D     106          3.907
LGA    D     107      D     107         10.453
LGA    A     108      A     108         14.188
LGA    S     109      S     109         15.971

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     32    2.83    28.899    24.482     1.091

LGA_LOCAL      RMSD =  2.834  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.349  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 12.868  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.725861 * X  +   0.570667 * Y  +  -0.384012 * Z  + -17.746307
  Y_new =   0.493520 * X  +   0.043197 * Y  +  -0.868661 * Z  +  10.074883
  Z_new =  -0.479128 * X  +  -0.820045 * Y  +  -0.312991 * Z  +   3.465568 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.935406    1.206186  [ DEG:  -110.8906     69.1094 ]
  Theta =   0.499661    2.641932  [ DEG:    28.6285    151.3715 ]
  Phi   =   2.544477   -0.597115  [ DEG:   145.7878    -34.2122 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS168_3                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS168_3.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   32   2.83  24.482    12.87
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS168_3
PFRMAT TS
TARGET T0352
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1     -12.994  -1.633  24.338  1.00 25.00           C
ATOM      2  CA  THR     2     -12.926  -1.405  20.533  1.00 25.00           C
ATOM      3  CA  THR     3     -14.574  -0.734  17.226  1.00 25.00           C
ATOM      4  CA  HIS     4     -17.755   1.081  18.347  1.00 25.00           C
ATOM      5  CA  ASP     5     -15.650   3.957  19.748  1.00 25.00           C
ATOM      6  CA  ARG     6     -13.721   4.186  16.446  1.00 25.00           C
ATOM      7  CA  VAL     7     -17.018   4.273  14.499  1.00 25.00           C
ATOM      8  CA  ARG     8     -18.323   7.057  16.783  1.00 25.00           C
ATOM      9  CA  LEU     9     -15.094   9.045  16.243  1.00 25.00           C
ATOM     10  CA  GLN    10     -15.431   8.613  12.453  1.00 25.00           C
ATOM     11  CA  LEU    11     -19.064   9.817  12.615  1.00 25.00           C
ATOM     12  CA  GLN    12     -17.986  12.873  14.656  1.00 25.00           C
ATOM     13  CA  ALA    13     -15.249  13.651  12.092  1.00 25.00           C
ATOM     14  CA  LEU    14     -17.799  13.367   9.247  1.00 25.00           C
ATOM     15  CA  GLU    15     -20.172  15.731  11.106  1.00 25.00           C
ATOM     16  CA  ALA    16     -17.318  18.236  11.610  1.00 25.00           C
ATOM     17  CA  LEU    17     -16.458  18.045   7.883  1.00 25.00           C
ATOM     18  CA  LEU    18     -20.131  18.648   6.980  1.00 25.00           C
ATOM     19  CA  ARG    19     -20.236  21.673   9.326  1.00 25.00           C
ATOM     20  CA  GLU    20     -17.049  23.060   7.722  1.00 25.00           C
ATOM     21  CA  HIS    21     -18.571  22.596   4.238  1.00 25.00           C
ATOM     22  CA  GLN    22     -21.752  24.412   5.359  1.00 25.00           C
ATOM     23  CA  HIS    23     -19.646  27.288   6.759  1.00 25.00           C
ATOM     24  CA  TRP    24     -17.718  27.516   3.458  1.00 25.00           C
ATOM     25  CA  ARG    25     -21.015  27.604   1.511  1.00 25.00           C
ATOM     26  CA  ASN    26     -22.325  30.512   3.659  1.00 25.00           C
ATOM     27  CA  ASP    27     -21.134  32.630   6.619  1.00 25.00           C
ATOM     28  CA  GLU    28     -19.433  34.852   3.977  1.00 25.00           C
ATOM     29  CA  PRO    29     -17.852  36.035   0.760  1.00 25.00           C
ATOM     30  CA  GLN    30     -19.384  34.903  -2.598  1.00 25.00           C
ATOM     31  CA  PRO    31     -18.443  32.736  -5.619  1.00 25.00           C
ATOM     32  CA  HIS    32     -17.396  29.078  -5.181  1.00 25.00           C
ATOM     33  CA  GLN    33     -21.073  28.019  -5.026  1.00 25.00           C
ATOM     34  CA  PHE    34     -21.804  30.002  -8.220  1.00 25.00           C
ATOM     35  CA  ASN    35     -18.834  28.329  -9.967  1.00 25.00           C
ATOM     36  CA  SER    36     -19.754  27.745 -13.553  1.00 25.00           C
ATOM     37  CA  THR    37     -20.269  23.935 -13.429  1.00 25.00           C
ATOM     38  CA  GLN    38     -23.770  24.365 -14.848  1.00 25.00           C
ATOM     39  CA  PRO    39     -26.688  26.555 -13.772  1.00 25.00           C
ATOM     40  CA  PHE    40     -28.338  24.782 -10.914  1.00 25.00           C
ATOM     41  CA  PHE    41     -30.205  21.516 -10.490  1.00 25.00           C
ATOM     42  CA  MET    42     -31.403  21.790  -6.863  1.00 25.00           C
ATOM     43  CA  ASP    43     -34.838  22.936  -5.638  1.00 25.00           C
ATOM     44  CA  THR    44     -34.502  24.920  -2.342  1.00 25.00           C
ATOM     45  CA  MET    45     -32.104  23.792   0.398  1.00 25.00           C
ATOM     46  CA  GLU    46     -32.966  20.691   2.428  1.00 25.00           C
ATOM     47  CA  PRO    47     -30.405  17.984   1.780  1.00 25.00           C
ATOM     48  CA  LEU    48     -29.778  14.214   2.039  1.00 25.00           C
ATOM     49  CA  GLU    49     -28.014  14.249  -1.360  1.00 25.00           C
ATOM     50  CA  TRP    50     -25.835  17.187  -0.225  1.00 25.00           C
ATOM     51  CA  LEU    51     -24.939  15.313   2.992  1.00 25.00           C
ATOM     52  CA  GLN    52     -24.011  12.207   0.954  1.00 25.00           C
ATOM     53  CA  TRP    53     -21.811  14.341  -1.343  1.00 25.00           C
ATOM     54  CA  VAL    54     -20.085  15.887   1.706  1.00 25.00           C
ATOM     55  CA  LEU    55     -19.467  12.397   3.157  1.00 25.00           C
ATOM     56  CA  ILE    56     -17.990  11.244  -0.183  1.00 25.00           C
ATOM     57  CA  PRO    57     -15.704  14.316  -0.261  1.00 25.00           C
ATOM     58  CA  ARG    58     -14.557  13.583   3.319  1.00 25.00           C
ATOM     59  CA  MET    59     -13.823   9.947   2.366  1.00 25.00           C
ATOM     60  CA  HIS    60     -11.807  11.123  -0.670  1.00 25.00           C
ATOM     61  CA  ASP    61      -9.824  13.532   1.550  1.00 25.00           C
ATOM     62  CA  LEU    62      -9.111  10.700   4.028  1.00 25.00           C
ATOM     63  CA  LEU    63      -7.924   8.456   1.160  1.00 25.00           C
ATOM     64  CA  ASP    64      -5.632  11.248  -0.108  1.00 25.00           C
ATOM     65  CA  ASN    65      -4.008  13.616   2.410  1.00 25.00           C
ATOM     66  CA  LYS    66      -1.871  11.609   4.811  1.00 25.00           C
ATOM     67  CA  GLN    67      -2.639  14.119   7.588  1.00 25.00           C
ATOM     68  CA  PRO    68      -2.495  11.384  10.294  1.00 25.00           C
ATOM     69  CA  LEU    69      -5.923  11.356  12.023  1.00 25.00           C
ATOM     70  CA  PRO    70      -7.120   7.804  11.324  1.00 25.00           C
ATOM     71  CA  GLY    71      -9.605   6.953   8.519  1.00 25.00           C
ATOM     72  CA  ALA    72     -12.652   6.946   6.242  1.00 25.00           C
ATOM     73  CA  PHE    73     -14.198   3.447   6.444  1.00 25.00           C
ATOM     74  CA  ALA    74     -16.299   4.524   9.460  1.00 25.00           C
ATOM     75  CA  VAL    75     -17.484   7.629   7.557  1.00 25.00           C
ATOM     76  CA  ALA    76     -18.430   5.455   4.550  1.00 25.00           C
ATOM     77  CA  PRO    77     -20.377   3.085   6.845  1.00 25.00           C
ATOM     78  CA  TYR    78     -22.214   6.064   8.402  1.00 25.00           C
ATOM     79  CA  TYR    79     -23.089   7.379   4.914  1.00 25.00           C
ATOM     80  CA  GLU    80     -24.409   3.925   3.915  1.00 25.00           C
ATOM     81  CA  MET    81     -26.535   3.789   7.097  1.00 25.00           C
ATOM     82  CA  ALA    82     -27.938   7.271   6.339  1.00 25.00           C
ATOM     83  CA  LEU    83     -28.784   6.179   2.767  1.00 25.00           C
ATOM     84  CA  ALA    84     -30.547   3.057   4.113  1.00 25.00           C
ATOM     85  CA  THR    85     -33.926   4.188   2.759  1.00 25.00           C
ATOM     86  CA  ASP    86     -33.209   5.980  -0.486  1.00 25.00           C
ATOM     87  CA  HIS    87     -33.128   3.987  -3.678  1.00 25.00           C
ATOM     88  CA  PRO    88     -30.795   4.341  -6.643  1.00 25.00           C
ATOM     89  CA  GLN    89     -28.217   6.751  -5.156  1.00 25.00           C
ATOM     90  CA  ARG    90     -28.400   4.914  -1.800  1.00 25.00           C
ATOM     91  CA  ALA    91     -27.892   1.561  -3.580  1.00 25.00           C
ATOM     92  CA  LEU    92     -24.863   2.982  -5.444  1.00 25.00           C
ATOM     93  CA  ILE    93     -23.400   4.260  -2.145  1.00 25.00           C
ATOM     94  CA  LEU    94     -23.915   0.816  -0.552  1.00 25.00           C
ATOM     95  CA  ALA    95     -22.176  -0.847  -3.532  1.00 25.00           C
ATOM     96  CA  GLU    96     -19.243   1.594  -3.217  1.00 25.00           C
ATOM     97  CA  LEU    97     -18.977   0.829   0.527  1.00 25.00           C
ATOM     98  CA  GLU    98     -18.979  -2.928  -0.216  1.00 25.00           C
ATOM     99  CA  LYS    99     -16.223  -2.438  -2.828  1.00 25.00           C
ATOM    100  CA  LEU   100     -14.154  -0.432  -0.305  1.00 25.00           C
ATOM    101  CA  ASP   101     -14.608  -3.199   2.304  1.00 25.00           C
ATOM    102  CA  ALA   102     -13.495  -5.825  -0.253  1.00 25.00           C
ATOM    103  CA  LEU   103     -10.406  -3.727  -1.100  1.00 25.00           C
ATOM    104  CA  PHE   104      -9.568  -3.410   2.624  1.00 25.00           C
ATOM    105  CA  ALA   105      -9.926  -7.199   3.051  1.00 25.00           C
ATOM    106  CA  ASP   106      -7.616  -7.780   0.052  1.00 25.00           C
ATOM    107  CA  ASP   107      -5.038  -5.370   1.540  1.00 25.00           C
ATOM    108  CA  ALA   108      -5.221  -7.206   4.895  1.00 25.00           C
ATOM    109  CA  SER   109      -4.713 -10.560   3.116  1.00 25.00           C
ATOM    110  CA  LEU   110      -7.207 -13.110   4.337  1.00 25.00           C
ATOM    111  CA  GLU   111      -5.018 -13.013   7.494  1.00 25.00           C
ATOM    112  CA  HIS   112      -1.327 -13.572   8.391  1.00 25.00           C
ATOM    113  CA  HIS   113      -1.209 -14.460  12.089  1.00 25.00           C
ATOM    114  CA  HIS   114       0.691 -12.074  14.406  1.00 25.00           C
ATOM    115  CA  HIS   115       3.005  -9.086  13.918  1.00 25.00           C
ATOM    116  CA  HIS   116       2.699  -5.547  12.638  1.00 25.00           C
ATOM    117  CA  HIS   117       1.746  -7.227   9.387  1.00 25.00           C
TER
END
