
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS168_4
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS168_4.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        74 - 106         4.89    31.09
  LCS_AVERAGE:     25.60

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         1 - 23          1.65    18.63
  LCS_AVERAGE:     12.57

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.60    18.82
  LCS_AVERAGE:      9.02

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      4   23   27     0    4    7   11   17   21   21   23   27   28   28   28   29   31   33   37   41   42   42   43 
LCS_GDT     T       2     T       2     15   23   27     3    4    6   12   20   22   23   25   27   28   28   30   31   33   36   39   41   42   42   43 
LCS_GDT     T       3     T       3     20   23   27    12   19   20   20   21   22   23   25   27   28   28   30   31   33   36   39   41   42   42   43 
LCS_GDT     H       4     H       4     20   23   27     8   19   20   20   21   22   23   25   27   28   28   28   29   33   36   39   41   42   42   43 
LCS_GDT     D       5     D       5     20   23   27    11   19   20   20   21   22   23   25   27   28   28   28   29   32   34   36   40   42   42   43 
LCS_GDT     R       6     R       6     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   33   36   39   41   42   42   45 
LCS_GDT     V       7     V       7     20   23   27    12   19   20   20   21   22   23   25   27   28   28   30   31   33   36   39   41   42   42   45 
LCS_GDT     R       8     R       8     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   34   36   38   40   44   46 
LCS_GDT     L       9     L       9     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   33   35   36   40   44   46 
LCS_GDT     Q      10     Q      10     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   33   36   39   40   44   47 
LCS_GDT     L      11     L      11     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   33   35   39   40   44   47 
LCS_GDT     Q      12     Q      12     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   33   35   39   40   44   47 
LCS_GDT     A      13     A      13     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   33   35   39   43   45   47 
LCS_GDT     L      14     L      14     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   34   38   41   43   46   47 
LCS_GDT     E      15     E      15     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   30   31   33   38   41   43   46   47 
LCS_GDT     A      16     A      16     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   31   34   38   41   43   46   47 
LCS_GDT     L      17     L      17     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   31   34   38   41   43   46   47 
LCS_GDT     L      18     L      18     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   31   34   38   41   43   46   47 
LCS_GDT     R      19     R      19     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   31   34   38   41   43   46   47 
LCS_GDT     E      20     E      20     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   31   34   38   41   43   46   47 
LCS_GDT     H      21     H      21     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   31   33   38   41   43   46   47 
LCS_GDT     Q      22     Q      22     20   23   27    12   19   20   20   21   22   23   25   27   28   28   28   29   31   33   35   36   39   40   46 
LCS_GDT     H      23     H      23      3   23   27     3    3    4   12   21   22   23   25   27   28   28   28   29   31   34   38   41   41   46   47 
LCS_GDT     W      24     W      24      3   22   27     3    3    4    5    7   10   13   17   22   26   27   28   29   31   34   38   41   43   46   47 
LCS_GDT     R      25     R      25      5    6   27     3    5    5    6    6    8   12   13   17   19   22   26   29   31   34   38   41   43   46   47 
LCS_GDT     N      26     N      26      5    6   27     3    5    5    6    6    8   12   13   15   17   20   23   26   30   34   37   41   43   46   47 
LCS_GDT     D      27     D      27      5    6   27     3    5    5    6    7    9   12   14   17   18   22   26   29   31   34   38   41   43   46   47 
LCS_GDT     E      28     E      28      5    6   27     3    5    5    6    7    9   12   14   17   19   22   26   29   31   34   38   41   43   46   47 
LCS_GDT     P      29     P      29      5    6   21     3    5    5    6    6    9   12   15   17   20   23   26   29   31   34   38   41   43   46   47 
LCS_GDT     Q      30     Q      30      5    6   22     3    5    5    6    7    8   12   15   19   20   23   26   29   31   34   38   41   43   46   47 
LCS_GDT     P      31     P      31      5    6   22     3    5    5    6    7   10   13   17   20   23   26   28   28   30   34   38   41   43   46   47 
LCS_GDT     H      32     H      32      5    6   22     3    5    6   10   11   13   16   20   21   22   26   28   28   30   33   35   38   43   46   47 
LCS_GDT     Q      33     Q      33      5    6   22     3    5    6   10   11   13   16   20   21   23   26   28   28   30   34   36   41   43   46   47 
LCS_GDT     F      34     F      34      5    6   22     3    5    5    6    7    9   12   12   15   18   26   28   28   30   34   36   38   43   46   47 
LCS_GDT     N      35     N      35      4    6   22     3    4    4    5    7    8   10   11   14   18   22   26   28   30   33   35   38   39   41   46 
LCS_GDT     S      36     S      36      4    6   22     3    4    4    5    7    7   10   11   14   15   19   26   28   30   33   35   38   39   41   41 
LCS_GDT     T      37     T      37      4    6   22     3    4    4    5    7    8   10   11   14   15   17   20   25   30   33   35   38   39   41   41 
LCS_GDT     Q      38     Q      38      4    6   22     3    4    4    5    7    7    8   11   14   16   22   25   28   30   33   35   38   39   41   41 
LCS_GDT     P      39     P      39      4    5   22     3    4    4    6    6    8   11   13   14   15   16   18   21   24   27   33   36   39   41   41 
LCS_GDT     F      40     F      40      4    8   22     3    5    5    6    8    8   11   13   13   14   15   17   19   21   26   31   35   39   41   41 
LCS_GDT     F      41     F      41      4    8   22     3    4    4    6    8    8   11   13   14   15   16   19   25   30   33   35   38   43   46   47 
LCS_GDT     M      42     M      42      5    8   22     4    4    5    6    8    8   11   20   21   23   26   28   29   31   33   38   41   43   46   47 
LCS_GDT     D      43     D      43      5    8   22     4    5    5    6    8    8   12   16   19   23   26   28   29   30   33   38   41   43   46   47 
LCS_GDT     T      44     T      44      5    8   22     4    5    5    6    8   10   13   16   19   23   26   28   29   31   33   38   41   43   46   47 
LCS_GDT     M      45     M      45      5    8   22     4    4    6    7   11   12   16   20   21   23   26   28   29   31   33   38   41   43   46   47 
LCS_GDT     E      46     E      46      5    8   22     3    5    5    6    8    8   11   13   14   19   21   25   28   30   33   35   38   40   44   47 
LCS_GDT     P      47     P      47      4    8   27     3    5    5    6    8   11   14   16   17   20   22   26   28   30   33   35   38   39   41   42 
LCS_GDT     L      48     L      48      4    6   27     3    3    4    4    9   10   11   13   17   20   22   26   28   30   33   35   38   39   42   45 
LCS_GDT     E      49     E      49      5    6   27     3    4    5    5    5   11   14   16   17   19   21   23   25   30   33   35   38   39   41   42 
LCS_GDT     W      50     W      50      5    6   27     3    4    5    5    8    8   11   13   14   16   17   21   26   30   33   35   38   39   41   41 
LCS_GDT     L      51     L      51      5    6   27     3    4    5    5    5    8   11   13   15   20   22   26   28   30   33   35   38   39   41   41 
LCS_GDT     Q      52     Q      52      5    6   27     3    4    5    5    5    8   11   16   17   20   22   26   28   30   33   35   38   39   41   42 
LCS_GDT     W      53     W      53      5   12   27     3    3    5    6    9   11   15   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     V      54     V      54      9   12   27     5    6    9   11   11   12   15   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     L      55     L      55      9   12   27     5    6    9   11   11   12   15   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     I      56     I      56      9   12   27     5    6    9   11   11   13   14   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     P      57     P      57      9   12   27     4    6    9   11   11   13   14   17   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     R      58     R      58      9   12   27     5    7    9   11   11   13   15   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     M      59     M      59      9   12   27     5    7    9   11   11   13   14   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     H      60     H      60      9   12   27     5    7    9   11   11   13   14   16   22   23   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     D      61     D      61      9   12   27     5    7    9   11   11   13   14   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     L      62     L      62      9   12   27     5    7    9   11   11   13   14   18   22   24   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     L      63     L      63      8   12   27     5    7    9   11   11   13   14   16   17   19   26   30   31   33   36   39   41   42   42   43 
LCS_GDT     D      64     D      64      8   12   27     5    7    9   11   11   13   14   18   22   23   27   30   31   33   36   39   41   42   42   43 
LCS_GDT     N      65     N      65      4   12   27     2    4    7    9   11   12   14   16   22   23   26   30   31   33   36   39   41   42   42   43 
LCS_GDT     K      66     K      66      4   10   27     1    3    7    9   10   11   14   16   17   20   21   26   28   32   35   39   41   42   42   43 
LCS_GDT     Q      67     Q      67      5    8   27     4    5    7    9   10   11   14   14   16   20   21   26   28   30   33   35   38   39   41   41 
LCS_GDT     P      68     P      68      5    8   27     4    5    7    9   10   11   14   14   16   18   20   22   25   30   32   35   38   39   41   41 
LCS_GDT     L      69     L      69      5    8   27     4    5    7    9   10   11   14   14   16   20   22   26   28   30   33   35   38   39   41   41 
LCS_GDT     P      70     P      70      5    8   27     4    5    7    9   10   11   14   14   16   17   20   22   24   28   31   35   35   38   40   41 
LCS_GDT     G      71     G      71      5    8   27     3    5    7    9   10   11   14   14   16   20   21   23   25   28   32   35   35   38   40   42 
LCS_GDT     A      72     A      72      4    6   27     3    3    4    4    6   11   14   14   16   20   21   23   26   28   32   35   35   38   40   42 
LCS_GDT     F      73     F      73      4    6   27     0    3    5    7   10   11   14   14   16   20   21   22   26   29   32   35   35   38   40   42 
LCS_GDT     A      74     A      74      3    5   33     3    3    4    4    6    8   11   13   17   21   24   30   31   32   32   35   37   38   42   45 
LCS_GDT     V      75     V      75      3   10   33     3    3    4    6    8    9   11   11   14   19   24   30   31   32   32   35   37   38   42   45 
LCS_GDT     A      76     A      76      8   10   33     3    8    8    8    8    9   11   11   16   19   24   30   31   32   34   36   38   41   45   47 
LCS_GDT     P      77     P      77      8   10   33     7    8    8    8    8    9   12   16   19   21   24   30   31   32   34   36   41   41   46   47 
LCS_GDT     Y      78     Y      78      8   10   33     7    8    8    8    8    9   12   16   19   21   24   30   31   32   34   38   41   41   46   47 
LCS_GDT     Y      79     Y      79      8   10   33     7    8    8    8    8    9   11   15   19   21   24   30   31   32   34   38   41   43   46   47 
LCS_GDT     E      80     E      80      8   10   33     7    8    8    8   12   19   21   23   23   24   24   30   31   32   33   38   41   43   46   47 
LCS_GDT     M      81     M      81      8   10   33     7    8    8    8    8    9   11   11   13   20   24   30   31   32   33   38   41   43   46   47 
LCS_GDT     A      82     A      82      8   10   33     7    8    8    8    8    9   12   16   19   21   24   30   31   32   32   34   36   43   46   47 
LCS_GDT     L      83     L      83      8   10   33     7    8    8   16   19   21   22   23   23   24   25   30   31   32   32   35   36   43   44   46 
LCS_GDT     A      84     A      84      5   10   33     3    4    5    6    7    9   18   21   23   26   27   30   31   32   33   37   39   43   44   47 
LCS_GDT     T      85     T      85      5    7   33     3    4    5    6    7    7    8   10   13   21   21   24   29   31   33   37   39   43   44   47 
LCS_GDT     D      86     D      86      5    7   33     3    4    5    6    7    8   10   16   21   23   26   28   30   31   33   37   39   43   44   47 
LCS_GDT     H      87     H      87      5   16   33     3    4    5    6    7    8   12   15   19   21   26   30   31   32   33   35   36   43   44   47 
LCS_GDT     P      88     P      88     15   20   33     4    8   17   19   19   21   21   23   24   26   26   30   31   32   32   37   41   43   44   47 
LCS_GDT     Q      89     Q      89     15   20   33     4   13   17   19   19   21   21   23   24   26   26   30   31   32   34   39   41   43   44   47 
LCS_GDT     R      90     R      90     15   20   33    10   13   17   19   19   21   21   23   24   26   27   28   31   32   36   39   41   43   44   47 
LCS_GDT     A      91     A      91     15   20   33    10   13   16   19   19   21   21   23   24   26   26   30   31   33   36   39   41   43   44   47 
LCS_GDT     L      92     L      92     15   20   33    10   13   17   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   44   47 
LCS_GDT     I      93     I      93     15   20   33    10   13   17   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   45   47 
LCS_GDT     L      94     L      94     15   20   33    10   13   17   19   19   21   21   24   27   28   28   30   31   33   36   39   41   43   46   47 
LCS_GDT     A      95     A      95     15   20   33    10   13   17   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   44   47 
LCS_GDT     E      96     E      96     15   20   33    10   13   17   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   46   47 
LCS_GDT     L      97     L      97     15   20   33    10   13   17   19   19   21   23   25   27   28   28   30   31   33   36   39   41   43   46   47 
LCS_GDT     E      98     E      98     15   20   33     4   13   17   19   19   21   21   25   27   28   28   30   31   33   36   39   41   43   46   47 
LCS_GDT     K      99     K      99     15   20   33     7   13   17   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   46   47 
LCS_GDT     L     100     L     100     15   20   33    10   13   17   19   19   21   21   23   24   28   28   30   31   33   36   39   41   43   46   47 
LCS_GDT     D     101     D     101     15   20   33    10   13   17   19   19   21   21   25   27   28   28   30   31   33   36   39   41   43   46   47 
LCS_GDT     A     102     A     102     15   20   33     4   11   17   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   46   47 
LCS_GDT     L     103     L     103     14   20   33     4    7   13   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   46   47 
LCS_GDT     F     104     F     104     13   20   33     4    8   17   19   19   21   21   23   24   26   27   30   31   33   36   39   41   43   46   47 
LCS_GDT     A     105     A     105     11   20   33     4    9   17   19   19   21   21   23   24   26   26   30   31   33   36   39   41   43   46   47 
LCS_GDT     D     106     D     106     11   20   33     4    8   17   19   19   21   21   23   24   26   26   30   31   33   36   39   41   43   46   47 
LCS_GDT     D     107     D     107      3   20   24     3    3    4    9   12   16   18   21   23   25   27   30   31   33   36   39   41   43   46   47 
LCS_GDT     A     108     A     108      3    3   24     3    3    4    4    4    7    9   14   17   18   26   30   31   33   35   39   41   43   46   47 
LCS_GDT     S     109     S     109      3    3   24     3    3    4    4    4    7    9   11   17   17   20   22   26   29   34   38   41   43   46   47 
LCS_AVERAGE  LCS_A:  15.73  (   9.02   12.57   25.60 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     19     20     20     21     22     23     25     27     28     28     30     31     33     36     39     41     43     46     47 
GDT PERCENT_CA  11.01  17.43  18.35  18.35  19.27  20.18  21.10  22.94  24.77  25.69  25.69  27.52  28.44  30.28  33.03  35.78  37.61  39.45  42.20  43.12
GDT RMS_LOCAL    0.27   0.56   0.60   0.60   1.02   1.32   1.61   2.13   2.44   2.57   2.57   4.02   4.12   4.35   4.90   5.24   5.50   6.13   6.34   6.65
GDT RMS_ALL_CA  19.00  18.85  18.82  18.82  18.73  18.77  19.12  19.91  19.73  19.79  19.79  19.82  19.80  19.65  19.25  19.39  19.37  18.39  18.53  17.84

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          4.496
LGA    T       2      T       2          2.477
LGA    T       3      T       3          2.844
LGA    H       4      H       4          1.478
LGA    D       5      D       5          1.135
LGA    R       6      R       6          2.963
LGA    V       7      V       7          2.659
LGA    R       8      R       8          0.139
LGA    L       9      L       9          1.741
LGA    Q      10      Q      10          2.604
LGA    L      11      L      11          1.782
LGA    Q      12      Q      12          0.830
LGA    A      13      A      13          2.384
LGA    L      14      L      14          2.129
LGA    E      15      E      15          0.349
LGA    A      16      A      16          1.351
LGA    L      17      L      17          1.744
LGA    L      18      L      18          0.348
LGA    R      19      R      19          1.183
LGA    E      20      E      20          2.079
LGA    H      21      H      21          0.797
LGA    Q      22      Q      22          1.711
LGA    H      23      H      23          2.392
LGA    W      24      W      24          7.483
LGA    R      25      R      25         13.458
LGA    N      26      N      26         16.544
LGA    D      27      D      27         16.687
LGA    E      28      E      28         21.223
LGA    P      29      P      29         25.208
LGA    Q      30      Q      30         28.167
LGA    P      31      P      31         31.327
LGA    H      32      H      32         30.714
LGA    Q      33      Q      33         27.903
LGA    F      34      F      34         31.044
LGA    N      35      N      35         30.376
LGA    S      36      S      36         32.411
LGA    T      37      T      37         32.918
LGA    Q      38      Q      38         30.144
LGA    P      39      P      39         30.670
LGA    F      40      F      40         27.431
LGA    F      41      F      41         29.137
LGA    M      42      M      42         26.452
LGA    D      43      D      43         28.186
LGA    T      44      T      44         28.444
LGA    M      45      M      45         26.313
LGA    E      46      E      46         28.456
LGA    P      47      P      47         29.000
LGA    L      48      L      48         27.610
LGA    E      49      E      49         32.964
LGA    W      50      W      50         30.521
LGA    L      51      L      51         27.592
LGA    Q      52      Q      52         27.466
LGA    W      53      W      53         25.982
LGA    V      54      V      54         22.726
LGA    L      55      L      55         20.695
LGA    I      56      I      56         21.042
LGA    P      57      P      57         22.107
LGA    R      58      R      58         21.661
LGA    M      59      M      59         20.744
LGA    H      60      H      60         24.397
LGA    D      61      D      61         25.530
LGA    L      62      L      62         22.664
LGA    L      63      L      63         24.580
LGA    D      64      D      64         28.633
LGA    N      65      N      65         30.505
LGA    K      66      K      66         30.569
LGA    Q      67      Q      67         31.840
LGA    P      68      P      68         31.357
LGA    L      69      L      69         26.982
LGA    P      70      P      70         26.985
LGA    G      71      G      71         22.563
LGA    A      72      A      72         21.655
LGA    F      73      F      73         21.294
LGA    A      74      A      74         17.511
LGA    V      75      V      75         19.535
LGA    A      76      A      76         21.433
LGA    P      77      P      77         22.050
LGA    Y      78      Y      78         20.409
LGA    Y      79      Y      79         18.853
LGA    E      80      E      80         18.175
LGA    M      81      M      81         17.518
LGA    A      82      A      82         16.135
LGA    L      83      L      83         15.004
LGA    A      84      A      84         13.238
LGA    T      85      T      85         14.662
LGA    D      86      D      86         12.531
LGA    H      87      H      87          9.576
LGA    P      88      P      88         12.100
LGA    Q      89      Q      89         14.393
LGA    R      90      R      90         10.204
LGA    A      91      A      91          7.114
LGA    L      92      L      92         11.339
LGA    I      93      I      93          9.922
LGA    L      94      L      94          4.406
LGA    A      95      A      95          7.139
LGA    E      96      E      96          8.370
LGA    L      97      L      97          3.938
LGA    E      98      E      98          3.648
LGA    K      99      K      99          7.230
LGA    L     100      L     100          4.786
LGA    D     101      D     101          3.952
LGA    A     102      A     102          8.314
LGA    L     103      L     103          9.823
LGA    F     104      F     104          7.801
LGA    A     105      A     105         12.411
LGA    D     106      D     106         15.497
LGA    D     107      D     107         17.631
LGA    A     108      A     108         23.352
LGA    S     109      S     109         28.233

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     25    2.13    23.624    20.440     1.122

LGA_LOCAL      RMSD =  2.127  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.794  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 14.180  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.756233 * X  +   0.215392 * Y  +  -0.617834 * Z  + -18.745062
  Y_new =  -0.557039 * X  +  -0.283422 * Y  +  -0.780627 * Z  +   3.946676
  Z_new =  -0.343249 * X  +   0.934494 * Y  +  -0.094351 * Z  +  -6.238840 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.671420   -1.470172  [ DEG:    95.7653    -84.2347 ]
  Theta =   0.350374    2.791219  [ DEG:    20.0749    159.9251 ]
  Phi   =  -0.634868    2.506724  [ DEG:   -36.3753    143.6247 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS168_4                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS168_4.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   25   2.13  20.440    14.18
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS168_4
PFRMAT TS
TARGET T0352
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1       2.563  -7.333  -4.516  1.00 25.00           C
ATOM      2  CA  THR     2       0.649  -7.254  -7.874  1.00 25.00           C
ATOM      3  CA  THR     3      -2.916  -6.169  -8.783  1.00 25.00           C
ATOM      4  CA  HIS     4      -2.068  -2.957  -6.879  1.00 25.00           C
ATOM      5  CA  ASP     5      -1.929  -1.011 -10.175  1.00 25.00           C
ATOM      6  CA  ARG     6      -5.333  -2.443 -11.192  1.00 25.00           C
ATOM      7  CA  VAL     7      -6.799  -1.433  -7.800  1.00 25.00           C
ATOM      8  CA  ARG     8      -5.394   2.105  -8.219  1.00 25.00           C
ATOM      9  CA  LEU     9      -6.925   2.324 -11.723  1.00 25.00           C
ATOM     10  CA  GLN    10     -10.306   1.167 -10.345  1.00 25.00           C
ATOM     11  CA  LEU    11     -10.109   3.807  -7.577  1.00 25.00           C
ATOM     12  CA  GLN    12      -9.305   6.505 -10.174  1.00 25.00           C
ATOM     13  CA  ALA    13     -12.290   5.385 -12.297  1.00 25.00           C
ATOM     14  CA  LEU    14     -14.566   5.534  -9.221  1.00 25.00           C
ATOM     15  CA  GLU    15     -13.298   9.059  -8.424  1.00 25.00           C
ATOM     16  CA  ALA    16     -13.970  10.144 -12.034  1.00 25.00           C
ATOM     17  CA  LEU    17     -17.512   8.700 -11.836  1.00 25.00           C
ATOM     18  CA  LEU    18     -18.119  10.574  -8.551  1.00 25.00           C
ATOM     19  CA  ARG    19     -16.875  13.825 -10.149  1.00 25.00           C
ATOM     20  CA  GLU    20     -19.209  13.279 -13.136  1.00 25.00           C
ATOM     21  CA  HIS    21     -22.151  12.675 -10.759  1.00 25.00           C
ATOM     22  CA  GLN    22     -21.303  15.889  -8.855  1.00 25.00           C
ATOM     23  CA  HIS    23     -21.165  17.834 -12.151  1.00 25.00           C
ATOM     24  CA  TRP    24     -24.567  16.402 -13.167  1.00 25.00           C
ATOM     25  CA  ARG    25     -26.033  17.412  -9.775  1.00 25.00           C
ATOM     26  CA  ASN    26     -24.747  20.358  -7.850  1.00 25.00           C
ATOM     27  CA  ASP    27     -23.987  22.492 -10.959  1.00 25.00           C
ATOM     28  CA  GLU    28     -25.331  25.851 -12.131  1.00 25.00           C
ATOM     29  CA  PRO    29     -28.838  24.795 -13.163  1.00 25.00           C
ATOM     30  CA  GLN    30     -31.722  24.291 -10.825  1.00 25.00           C
ATOM     31  CA  PRO    31     -33.262  21.873 -13.297  1.00 25.00           C
ATOM     32  CA  HIS    32     -32.736  19.370 -16.148  1.00 25.00           C
ATOM     33  CA  GLN    33     -31.685  16.684 -13.629  1.00 25.00           C
ATOM     34  CA  PHE    34     -34.806  17.397 -11.528  1.00 25.00           C
ATOM     35  CA  ASN    35     -37.003  17.115 -14.651  1.00 25.00           C
ATOM     36  CA  SER    36     -38.114  14.098 -16.736  1.00 25.00           C
ATOM     37  CA  THR    37     -41.086  12.724 -14.766  1.00 25.00           C
ATOM     38  CA  GLN    38     -40.798  10.075 -11.970  1.00 25.00           C
ATOM     39  CA  PRO    39     -42.500  12.743  -9.844  1.00 25.00           C
ATOM     40  CA  PHE    40     -39.902  13.592  -7.196  1.00 25.00           C
ATOM     41  CA  PHE    41     -39.882  11.327  -4.166  1.00 25.00           C
ATOM     42  CA  MET    42     -36.919  11.990  -1.849  1.00 25.00           C
ATOM     43  CA  ASP    43     -37.278  13.021   1.779  1.00 25.00           C
ATOM     44  CA  THR    44     -33.923  14.414   2.964  1.00 25.00           C
ATOM     45  CA  MET    45     -31.208  14.739   0.251  1.00 25.00           C
ATOM     46  CA  GLU    46     -28.886  12.252   2.030  1.00 25.00           C
ATOM     47  CA  PRO    47     -27.155   9.464   0.085  1.00 25.00           C
ATOM     48  CA  LEU    48     -27.012   5.639  -0.034  1.00 25.00           C
ATOM     49  CA  GLU    49     -28.888   5.648  -3.373  1.00 25.00           C
ATOM     50  CA  TRP    50     -26.443   8.245  -4.768  1.00 25.00           C
ATOM     51  CA  LEU    51     -23.480   6.109  -3.618  1.00 25.00           C
ATOM     52  CA  GLN    52     -25.018   3.029  -5.296  1.00 25.00           C
ATOM     53  CA  TRP    53     -25.511   5.010  -8.537  1.00 25.00           C
ATOM     54  CA  VAL    54     -21.865   6.177  -8.407  1.00 25.00           C
ATOM     55  CA  LEU    55     -20.703   2.565  -7.885  1.00 25.00           C
ATOM     56  CA  ILE    56     -22.816   1.428 -10.869  1.00 25.00           C
ATOM     57  CA  PRO    57     -21.309   4.209 -13.028  1.00 25.00           C
ATOM     58  CA  ARG    58     -17.783   3.156 -11.967  1.00 25.00           C
ATOM     59  CA  MET    59     -18.578  -0.485 -12.850  1.00 25.00           C
ATOM     60  CA  HIS    60     -19.891   0.608 -16.278  1.00 25.00           C
ATOM     61  CA  ASP    61     -16.704   2.644 -16.878  1.00 25.00           C
ATOM     62  CA  LEU    62     -14.561  -0.381 -15.915  1.00 25.00           C
ATOM     63  CA  LEU    63     -16.557  -2.592 -18.323  1.00 25.00           C
ATOM     64  CA  ASP    64     -16.071  -0.024 -21.123  1.00 25.00           C
ATOM     65  CA  ASN    65     -14.651   3.504 -21.672  1.00 25.00           C
ATOM     66  CA  LYS    66     -11.722   1.571 -23.140  1.00 25.00           C
ATOM     67  CA  GLN    67      -9.591  -1.481 -23.959  1.00 25.00           C
ATOM     68  CA  PRO    68     -10.304  -4.983 -22.745  1.00 25.00           C
ATOM     69  CA  LEU    69     -12.680  -5.915 -19.981  1.00 25.00           C
ATOM     70  CA  PRO    70     -12.082  -9.398 -18.612  1.00 25.00           C
ATOM     71  CA  GLY    71     -12.546 -11.024 -15.241  1.00 25.00           C
ATOM     72  CA  ALA    72     -13.420  -7.887 -13.200  1.00 25.00           C
ATOM     73  CA  PHE    73     -14.826 -10.120 -10.424  1.00 25.00           C
ATOM     74  CA  ALA    74     -15.055  -7.101  -8.077  1.00 25.00           C
ATOM     75  CA  VAL    75     -16.878  -5.101 -10.787  1.00 25.00           C
ATOM     76  CA  ALA    76     -19.327  -8.000 -11.312  1.00 25.00           C
ATOM     77  CA  PRO    77     -19.963  -8.178  -7.539  1.00 25.00           C
ATOM     78  CA  TYR    78     -20.604  -4.403  -7.444  1.00 25.00           C
ATOM     79  CA  TYR    79     -23.056  -4.721 -10.369  1.00 25.00           C
ATOM     80  CA  GLU    80     -24.874  -7.571  -8.568  1.00 25.00           C
ATOM     81  CA  MET    81     -25.100  -5.448  -5.388  1.00 25.00           C
ATOM     82  CA  ALA    82     -26.514  -2.522  -7.413  1.00 25.00           C
ATOM     83  CA  LEU    83     -29.106  -4.845  -9.008  1.00 25.00           C
ATOM     84  CA  ALA    84     -30.102  -6.151  -5.548  1.00 25.00           C
ATOM     85  CA  THR    85     -28.615  -9.687  -5.426  1.00 25.00           C
ATOM     86  CA  ASP    86     -31.544 -10.244  -3.063  1.00 25.00           C
ATOM     87  CA  HIS    87     -33.456  -7.292  -1.543  1.00 25.00           C
ATOM     88  CA  PRO    88     -31.177  -5.697   1.063  1.00 25.00           C
ATOM     89  CA  GLN    89     -28.446  -6.537  -1.487  1.00 25.00           C
ATOM     90  CA  ARG    90     -27.720  -2.809  -1.974  1.00 25.00           C
ATOM     91  CA  ALA    91     -27.482  -2.333   1.818  1.00 25.00           C
ATOM     92  CA  LEU    92     -25.069  -5.296   2.063  1.00 25.00           C
ATOM     93  CA  ILE    93     -22.923  -3.813  -0.740  1.00 25.00           C
ATOM     94  CA  LEU    94     -22.861  -0.434   1.062  1.00 25.00           C
ATOM     95  CA  ALA    95     -21.806  -2.162   4.315  1.00 25.00           C
ATOM     96  CA  GLU    96     -19.014  -4.010   2.457  1.00 25.00           C
ATOM     97  CA  LEU    97     -17.816  -0.711   0.924  1.00 25.00           C
ATOM     98  CA  GLU    98     -17.803   0.923   4.388  1.00 25.00           C
ATOM     99  CA  LYS    99     -15.784  -2.013   5.791  1.00 25.00           C
ATOM    100  CA  LEU   100     -13.277  -1.696   2.915  1.00 25.00           C
ATOM    101  CA  ASP   101     -12.946   2.060   3.585  1.00 25.00           C
ATOM    102  CA  ALA   102     -12.346   1.368   7.303  1.00 25.00           C
ATOM    103  CA  LEU   103      -9.665  -1.217   6.416  1.00 25.00           C
ATOM    104  CA  PHE   104      -7.974   1.302   4.079  1.00 25.00           C
ATOM    105  CA  ALA   105      -8.021   3.943   6.853  1.00 25.00           C
ATOM    106  CA  ASP   106      -6.474   1.437   9.300  1.00 25.00           C
ATOM    107  CA  ASP   107      -3.742   0.597   6.751  1.00 25.00           C
ATOM    108  CA  ALA   108      -3.017   4.326   6.263  1.00 25.00           C
ATOM    109  CA  SER   109      -2.779   4.800  10.056  1.00 25.00           C
ATOM    110  CA  LEU   110      -4.168   8.289  10.450  1.00 25.00           C
ATOM    111  CA  GLU   111      -0.657   9.540   9.472  1.00 25.00           C
ATOM    112  CA  HIS   112       2.119   8.890  11.980  1.00 25.00           C
ATOM    113  CA  HIS   113       4.147   5.687  12.339  1.00 25.00           C
ATOM    114  CA  HIS   114       5.798   5.061   8.913  1.00 25.00           C
ATOM    115  CA  HIS   115       8.279   7.386   7.194  1.00 25.00           C
ATOM    116  CA  HIS   116       6.605   7.721   3.814  1.00 25.00           C
ATOM    117  CA  HIS   117       2.990   7.971   2.747  1.00 25.00           C
TER
END
