
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS168_5
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS168_5.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        68 - 108         4.89    16.39
  LONGEST_CONTINUOUS_SEGMENT:    41        69 - 109         4.82    16.82
  LCS_AVERAGE:     29.51

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         1 - 23          1.93    18.73
  LCS_AVERAGE:     12.79

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.61    18.77
  LCS_AVERAGE:      8.75

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      4   23   27     3    3    4    5    8   12   15   20   23   24   25   25   27   27   29   30   32   38   38   41 
LCS_GDT     T       2     T       2      4   23   27     3    3    4    6   14   21   21   22   23   24   25   25   28   28   29   31   35   38   40   41 
LCS_GDT     T       3     T       3     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   38   41   42 
LCS_GDT     H       4     H       4     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   38   41   42 
LCS_GDT     D       5     D       5     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   38   41   43 
LCS_GDT     R       6     R       6     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   38   41   43 
LCS_GDT     V       7     V       7     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   39   42   44 
LCS_GDT     R       8     R       8     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   38   41   43 
LCS_GDT     L       9     L       9     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   38   41   43 
LCS_GDT     Q      10     Q      10     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   39   42   44 
LCS_GDT     L      11     L      11     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   39   45   52 
LCS_GDT     Q      12     Q      12     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   39   42   44 
LCS_GDT     A      13     A      13     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   39   45   47 
LCS_GDT     L      14     L      14     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   35   41   46   49   54   55 
LCS_GDT     E      15     E      15     20   23   27    13   19   20   20   21   21   21   22   23   24   25   25   28   28   35   41   46   49   54   55 
LCS_GDT     A      16     A      16     20   23   27    12   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   39   45   55 
LCS_GDT     L      17     L      17     20   23   27    12   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   40   46   51   55 
LCS_GDT     L      18     L      18     20   23   27    12   19   20   20   21   21   21   22   23   24   26   30   39   39   41   43   46   49   54   55 
LCS_GDT     R      19     R      19     20   23   27    12   19   20   20   21   21   21   22   23   24   25   25   28   28   41   43   46   49   52   55 
LCS_GDT     E      20     E      20     20   23   27    12   19   20   20   21   21   21   22   23   24   25   25   28   28   29   32   35   39   51   55 
LCS_GDT     H      21     H      21     20   23   27    12   19   20   20   21   21   21   22   23   24   25   25   28   28   29   43   45   46   51   55 
LCS_GDT     Q      22     Q      22     20   23   27    12   19   20   20   21   21   21   22   23   26   27   30   39   39   41   43   46   49   52   55 
LCS_GDT     H      23     H      23      3   23   27     3    3    5   12   21   21   21   22   23   24   26   30   39   39   41   43   46   49   52   55 
LCS_GDT     W      24     W      24      3   22   27     3    3    3    4    8   10   13   16   20   22   26   30   31   36   41   43   46   49   52   55 
LCS_GDT     R      25     R      25      3    5   27     1    3    4    5    5    8   10   12   14   22   29   32   39   39   41   43   46   50   56   59 
LCS_GDT     N      26     N      26      3    5   27     0    3    3    5    5    7    9   12   14   15   18   28   39   39   41   43   46   49   54   55 
LCS_GDT     D      27     D      27      3    5   27     1    3    4    5    5   10   10   12   14   15   18   21   25   28   35   41   46   49   54   55 
LCS_GDT     E      28     E      28      3    6   27     0    3    4    5    5    8   10   12   14   15   18   20   24   28   35   41   46   49   54   55 
LCS_GDT     P      29     P      29      3    6   22     3    3    4    5    6    8    9   12   14   16   19   23   34   36   38   39   45   51   56   59 
LCS_GDT     Q      30     Q      30      5    6   22     3    4    5    6    7   10   13   18   22   24   27   30   34   41   46   50   51   54   56   59 
LCS_GDT     P      31     P      31      5    6   25     3    4    5    8   10   13   17   23   29   33   34   36   40   44   47   50   51   55   57   59 
LCS_GDT     H      32     H      32      5    6   25     3    5    9   12   16   21   24   25   30   33   34   36   40   44   47   50   51   55   57   59 
LCS_GDT     Q      33     Q      33      5    6   27     3    5    9   12   16   21   24   25   30   33   34   36   40   44   47   50   51   55   57   59 
LCS_GDT     F      34     F      34      5    6   27     3    4    5    6    7   10   17   21   29   33   34   36   40   44   47   50   51   55   57   59 
LCS_GDT     N      35     N      35      4    6   27     3    4    4    5    7    9   12   14   17   19   26   31   40   43   47   50   51   55   57   59 
LCS_GDT     S      36     S      36      4    6   27     3    4    4    4    6    8    9   10   12   19   22   25   28   33   40   43   49   55   57   59 
LCS_GDT     T      37     T      37      4    6   27     3    4    4    5    6    8   10   14   15   18   21   25   28   30   34   35   43   47   49   51 
LCS_GDT     Q      38     Q      38      4    6   27     3    4    4    5    6    8   10   14   17   19   22   25   28   32   35   38   43   47   49   51 
LCS_GDT     P      39     P      39      4    9   27     3    4    7    8    9   10   11   13   15   16   20   23   27   28   31   35   36   39   40   43 
LCS_GDT     F      40     F      40      4    9   27     3    3    7    8    9   10   11   13   15   18   21   23   28   30   32   35   37   40   41   45 
LCS_GDT     F      41     F      41      4    9   27     1    3    4    5    9   10   12   14   17   19   22   25   28   33   35   38   43   47   49   51 
LCS_GDT     M      42     M      42      5    9   27     4    4    7    8    9   10   12   16   17   22   24   27   31   35   38   42   44   50   54   55 
LCS_GDT     D      43     D      43      5    9   27     4    4    7    8    9   10   12   16   17   22   24   28   32   35   38   42   46   50   54   55 
LCS_GDT     T      44     T      44      5    9   27     4    4    7    8    9   10   11   13   15   17   20   25   28   32   38   42   44   50   54   55 
LCS_GDT     M      45     M      45      5    9   27     4    4    7    8    9   10   12   14   17   23   28   30   33   35   38   42   46   50   54   55 
LCS_GDT     E      46     E      46      5    9   27     3    4    7    8    9   10   12   14   18   19   24   27   33   35   38   42   44   47   49   52 
LCS_GDT     P      47     P      47      4    9   27     3    4    7    8    9   10   14   15   19   23   28   30   33   35   38   42   44   47   49   52 
LCS_GDT     L      48     L      48      3    6   27     3    3    3    6    7    8   12   14   19   23   28   30   33   35   38   42   44   47   49   52 
LCS_GDT     E      49     E      49      5    6   27     3    4    5    5    6   11   12   14   17   19   22   25   29   33   35   39   44   47   49   51 
LCS_GDT     W      50     W      50      5    6   27     3    4    5    6    6    8   11   13   16   19   21   25   28   33   35   39   43   47   49   51 
LCS_GDT     L      51     L      51      5    6   27     3    4    5    6    9   10   14   15   16   19   22   30   33   35   38   42   44   47   49   52 
LCS_GDT     Q      52     Q      52      5    6   27     3    4    5    6    6   11   14   15   19   23   28   30   33   35   38   42   44   47   54   55 
LCS_GDT     W      53     W      53      5   13   27     3    3    5    5    7    9   14   15   19   23   28   30   33   35   38   42   44   50   54   55 
LCS_GDT     V      54     V      54      9   13   27     5    6    9   12   12   13   14   15   19   23   28   30   33   35   40   44   48   51   54   57 
LCS_GDT     L      55     L      55      9   13   27     5    6    9   12   12   13   13   15   18   22   28   30   34   42   45   46   51   53   56   59 
LCS_GDT     I      56     I      56      9   13   27     5    6    9   12   12   13   14   19   21   28   31   35   40   44   47   50   51   55   57   59 
LCS_GDT     P      57     P      57      9   13   27     4    7    9   12   12   13   14   19   21   26   28   34   40   44   47   50   51   55   57   59 
LCS_GDT     R      58     R      58      9   13   27     5    7    9   12   12   13   14   19   21   26   28   32   40   44   47   50   51   55   57   59 
LCS_GDT     M      59     M      59      9   13   27     5    7    9   12   12   13   13   19   21   26   28   34   40   44   47   50   51   55   57   59 
LCS_GDT     H      60     H      60      9   13   23     4    7    9   12   12   13   13   19   21   26   28   30   35   41   46   49   51   55   57   59 
LCS_GDT     D      61     D      61      9   13   23     4    7    9   12   12   13   14   19   21   26   28   34   40   44   47   50   51   55   57   59 
LCS_GDT     L      62     L      62      9   13   23     4    7    9   12   12   13   14   19   21   26   28   32   40   44   47   50   51   55   57   59 
LCS_GDT     L      63     L      63      9   13   23     4    7    9   12   12   13   13   14   16   23   24   29   33   36   38   42   48   52   55   57 
LCS_GDT     D      64     D      64      9   13   23     4    7    9   12   12   13   13   14   16   17   20   25   31   35   38   46   47   49   56   59 
LCS_GDT     N      65     N      65      9   13   23     4    7    9   12   12   13   13   14   20   26   28   34   40   44   47   50   51   55   57   59 
LCS_GDT     K      66     K      66      3   10   33     3    3    3    4   11   15   17   23   28   30   34   35   40   44   47   50   51   55   57   59 
LCS_GDT     Q      67     Q      67      3   10   34     3    3    6    9   10   13   14   19   22   26   28   35   40   44   47   50   51   55   57   59 
LCS_GDT     P      68     P      68      4    6   41     4    4    5    6    7   12   16   20   22   26   31   35   40   44   47   50   51   55   57   59 
LCS_GDT     L      69     L      69      4    6   41     4    4    5    6    7   12   14   20   22   26   29   35   40   44   47   50   51   55   57   59 
LCS_GDT     P      70     P      70      4    6   41     4    5    9   11   13   15   19   24   30   33   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     G      71     G      71      4    6   41     4    5    9   11   13   15   19   24   30   33   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A      72     A      72      3    6   41     0    3    5    6    7   12   16   24   30   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     F      73     F      73      3    6   41     3    5    9   11   16   21   24   29   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A      74     A      74      3    5   41     3    3    4    9   13   17   22   29   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     V      75     V      75      3   10   41     3    4   13   18   22   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A      76     A      76      8   10   41     3    8   10   15   22   26   30   31   33   34   35   37   39   44   47   50   51   55   57   59 
LCS_GDT     P      77     P      77      8   10   41     7    8   13   18   22   27   30   31   33   34   35   37   39   43   47   50   51   55   57   59 
LCS_GDT     Y      78     Y      78      8   10   41     7    8   10   17   23   27   30   31   33   34   35   37   37   38   43   44   49   55   57   59 
LCS_GDT     Y      79     Y      79      8   10   41     7    8   10   17   23   27   30   31   33   34   35   37   39   42   47   50   51   55   57   59 
LCS_GDT     E      80     E      80      8   10   41     7    8   10   17   23   27   30   31   33   34   35   37   39   44   47   50   51   55   57   59 
LCS_GDT     M      81     M      81      8   10   41     7    8   10   17   23   27   30   31   33   34   35   37   38   41   44   49   51   55   57   59 
LCS_GDT     A      82     A      82      8   10   41     7    8   10   14   20   26   30   31   33   34   35   37   37   38   43   45   51   55   57   59 
LCS_GDT     L      83     L      83      8   10   41     7    8   10   17   23   27   30   31   33   34   35   37   39   42   47   50   51   55   57   59 
LCS_GDT     A      84     A      84      3   10   41     3    3    5   12   23   27   30   31   33   34   35   37   39   39   43   46   51   55   57   59 
LCS_GDT     T      85     T      85      3   10   41     3    3    9   16   23   26   29   31   33   34   35   37   39   39   43   46   51   55   57   59 
LCS_GDT     D      86     D      86      3   10   41     3    3    5    6    9   19   26   27   33   34   35   36   39   39   43   43   47   54   57   59 
LCS_GDT     H      87     H      87      3   20   41     3    5   10   17   23   26   30   31   33   34   35   37   39   41   47   50   51   55   57   59 
LCS_GDT     P      88     P      88     15   20   41     4    8   15   19   22   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     Q      89     Q      89     15   20   41     4   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     R      90     R      90     15   20   41     6   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A      91     A      91     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     L      92     L      92     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     I      93     I      93     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     L      94     L      94     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A      95     A      95     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     E      96     E      96     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     L      97     L      97     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     E      98     E      98     15   20   41     4   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     K      99     K      99     15   20   41     7   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     L     100     L     100     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     D     101     D     101     15   20   41     9   13   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A     102     A     102     15   20   41     4   11   15   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     L     103     L     103     14   20   41     4    7   12   19   22   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     F     104     F     104     13   20   41     4    8   16   19   22   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A     105     A     105     11   20   41     4   10   16   19   23   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     D     106     D     106     11   20   41     4    8   16   19   22   27   30   31   33   34   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     D     107     D     107      3   20   41     3    3    4    8   11   15   20   24   30   33   35   37   40   44   47   50   51   55   57   59 
LCS_GDT     A     108     A     108      3    3   41     3    3    4    5    6    9   14   15   21   26   29   33   39   44   47   50   51   55   57   59 
LCS_GDT     S     109     S     109      3    3   41     3    3    4    5    6    9   14   15   19   26   28   31   34   37   41   45   51   52   56   59 
LCS_AVERAGE  LCS_A:  17.02  (   8.75   12.79   29.51 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     19     20     20     23     27     30     31     33     34     35     37     40     44     47     50     51     55     57     59 
GDT PERCENT_CA  11.93  17.43  18.35  18.35  21.10  24.77  27.52  28.44  30.28  31.19  32.11  33.94  36.70  40.37  43.12  45.87  46.79  50.46  52.29  54.13
GDT RMS_LOCAL    0.36   0.56   0.61   0.61   1.83   2.04   2.23   2.31   2.67   2.84   3.28   3.57   4.39   4.70   4.94   5.25   5.32   5.77   6.06   6.43
GDT RMS_ALL_CA  18.83  18.78  18.77  18.77  20.13  18.82  18.98  19.17  18.69  18.54  17.70  17.52  14.90  14.87  14.87  14.83  14.82  14.93  14.97  14.91

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         36.422
LGA    T       2      T       2         36.154
LGA    T       3      T       3         31.828
LGA    H       4      H       4         34.217
LGA    D       5      D       5         37.593
LGA    R       6      R       6         31.841
LGA    V       7      V       7         26.675
LGA    R       8      R       8         31.804
LGA    L       9      L       9         32.952
LGA    Q      10      Q      10         25.715
LGA    L      11      L      11         23.984
LGA    Q      12      Q      12         29.157
LGA    A      13      A      13         27.645
LGA    L      14      L      14         20.447
LGA    E      15      E      15         22.726
LGA    A      16      A      16         27.602
LGA    L      17      L      17         23.758
LGA    L      18      L      18         18.157
LGA    R      19      R      19         22.951
LGA    E      20      E      20         26.100
LGA    H      21      H      21         20.441
LGA    Q      22      Q      22         18.126
LGA    H      23      H      23         21.637
LGA    W      24      W      24         23.687
LGA    R      25      R      25         21.644
LGA    N      26      N      26         27.870
LGA    D      27      D      27         31.528
LGA    E      28      E      28         35.154
LGA    P      29      P      29         31.020
LGA    Q      30      Q      30         26.688
LGA    P      31      P      31         22.598
LGA    H      32      H      32         17.520
LGA    Q      33      Q      33         15.638
LGA    F      34      F      34         17.988
LGA    N      35      N      35         16.629
LGA    S      36      S      36         12.377
LGA    T      37      T      37         14.028
LGA    Q      38      Q      38         12.495
LGA    P      39      P      39         18.499
LGA    F      40      F      40         16.932
LGA    F      41      F      41         15.926
LGA    M      42      M      42         16.704
LGA    D      43      D      43         18.597
LGA    T      44      T      44         23.580
LGA    M      45      M      45         23.455
LGA    E      46      E      46         29.455
LGA    P      47      P      47         29.519
LGA    L      48      L      48         27.505
LGA    E      49      E      49         29.757
LGA    W      50      W      50         28.152
LGA    L      51      L      51         25.793
LGA    Q      52      Q      52         21.353
LGA    W      53      W      53         17.708
LGA    V      54      V      54         17.220
LGA    L      55      L      55         17.843
LGA    I      56      I      56         13.213
LGA    P      57      P      57         13.113
LGA    R      58      R      58         16.932
LGA    M      59      M      59         17.736
LGA    H      60      H      60         16.560
LGA    D      61      D      61         17.162
LGA    L      62      L      62         20.976
LGA    L      63      L      63         21.611
LGA    D      64      D      64         18.947
LGA    N      65      N      65         20.562
LGA    K      66      K      66         18.412
LGA    Q      67      Q      67         23.575
LGA    P      68      P      68         20.739
LGA    L      69      L      69         19.108
LGA    P      70      P      70         11.987
LGA    G      71      G      71         10.229
LGA    A      72      A      72          7.276
LGA    F      73      F      73          6.264
LGA    A      74      A      74          6.413
LGA    V      75      V      75          2.276
LGA    A      76      A      76          2.931
LGA    P      77      P      77          2.309
LGA    Y      78      Y      78          1.940
LGA    Y      79      Y      79          2.015
LGA    E      80      E      80          0.843
LGA    M      81      M      81          2.345
LGA    A      82      A      82          3.463
LGA    L      83      L      83          1.924
LGA    A      84      A      84          2.788
LGA    T      85      T      85          3.265
LGA    D      86      D      86          5.537
LGA    H      87      H      87          2.684
LGA    P      88      P      88          3.087
LGA    Q      89      Q      89          0.626
LGA    R      90      R      90          2.328
LGA    A      91      A      91          2.112
LGA    L      92      L      92          1.077
LGA    I      93      I      93          2.201
LGA    L      94      L      94          2.509
LGA    A      95      A      95          1.323
LGA    E      96      E      96          0.918
LGA    L      97      L      97          2.369
LGA    E      98      E      98          2.222
LGA    K      99      K      99          1.321
LGA    L     100      L     100          0.868
LGA    D     101      D     101          1.620
LGA    A     102      A     102          2.573
LGA    L     103      L     103          3.761
LGA    F     104      F     104          2.896
LGA    A     105      A     105          1.183
LGA    D     106      D     106          3.688
LGA    D     107      D     107         10.131
LGA    A     108      A     108         14.638
LGA    S     109      S     109         16.287

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     31    2.31    27.523    23.718     1.285

LGA_LOCAL      RMSD =  2.313  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.321  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 13.855  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.025193 * X  +  -0.968105 * Y  +  -0.249276 * Z  + -18.121233
  Y_new =  -0.991232 * X  +  -0.056544 * Y  +   0.119420 * Z  +   9.894828
  Z_new =  -0.129707 * X  +   0.244082 * Y  +  -0.961041 * Z  +   4.417299 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.892875   -0.248718  [ DEG:   165.7495    -14.2505 ]
  Theta =   0.130073    3.011520  [ DEG:     7.4526    172.5474 ]
  Phi   =  -1.545386    1.596206  [ DEG:   -88.5441     91.4559 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS168_5                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS168_5.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   31   2.31  23.718    13.86
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS168_5
PFRMAT TS
TARGET T0352
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1     -19.684  -8.358  19.703  1.00 25.00           C
ATOM      2  CA  THR     2     -19.097  -5.228  21.710  1.00 25.00           C
ATOM      3  CA  THR     3     -20.183  -1.987  20.041  1.00 25.00           C
ATOM      4  CA  HIS     4     -23.600  -0.525  19.118  1.00 25.00           C
ATOM      5  CA  ASP     5     -22.994   2.440  21.465  1.00 25.00           C
ATOM      6  CA  ARG     6     -19.559   3.026  19.877  1.00 25.00           C
ATOM      7  CA  VAL     7     -21.130   2.934  16.385  1.00 25.00           C
ATOM      8  CA  ARG     8     -23.792   5.456  17.490  1.00 25.00           C
ATOM      9  CA  LEU     9     -21.069   7.749  18.901  1.00 25.00           C
ATOM     10  CA  GLN    10     -19.124   7.507  15.610  1.00 25.00           C
ATOM     11  CA  LEU    11     -22.295   8.375  13.645  1.00 25.00           C
ATOM     12  CA  GLN    12     -22.910  11.393  15.922  1.00 25.00           C
ATOM     13  CA  ALA    13     -19.297  12.554  15.400  1.00 25.00           C
ATOM     14  CA  LEU    14     -19.710  12.210  11.608  1.00 25.00           C
ATOM     15  CA  GLU    15     -22.950  14.245  11.750  1.00 25.00           C
ATOM     16  CA  ALA    16     -21.185  16.959  13.797  1.00 25.00           C
ATOM     17  CA  LEU    17     -18.329  17.059  11.247  1.00 25.00           C
ATOM     18  CA  LEU    18     -20.858  17.387   8.390  1.00 25.00           C
ATOM     19  CA  ARG    19     -22.608  20.251  10.236  1.00 25.00           C
ATOM     20  CA  GLU    20     -19.243  22.004  10.755  1.00 25.00           C
ATOM     21  CA  HIS    21     -18.434  21.608   7.033  1.00 25.00           C
ATOM     22  CA  GLN    22     -21.852  23.069   6.109  1.00 25.00           C
ATOM     23  CA  HIS    23     -21.246  26.035   8.456  1.00 25.00           C
ATOM     24  CA  TRP    24     -17.811  26.620   6.868  1.00 25.00           C
ATOM     25  CA  ARG    25     -19.382  26.529   3.376  1.00 25.00           C
ATOM     26  CA  ASN    26     -21.445  29.422   4.563  1.00 25.00           C
ATOM     27  CA  ASP    27     -24.239  31.888   5.229  1.00 25.00           C
ATOM     28  CA  GLU    28     -22.211  34.675   6.903  1.00 25.00           C
ATOM     29  CA  PRO    29     -20.731  34.945   3.390  1.00 25.00           C
ATOM     30  CA  GLN    30     -21.672  34.964  -0.355  1.00 25.00           C
ATOM     31  CA  PRO    31     -18.339  34.695  -2.187  1.00 25.00           C
ATOM     32  CA  HIS    32     -15.218  33.306  -0.458  1.00 25.00           C
ATOM     33  CA  GLN    33     -16.572  29.742  -0.824  1.00 25.00           C
ATOM     34  CA  PHE    34     -17.255  30.357  -4.542  1.00 25.00           C
ATOM     35  CA  ASN    35     -13.696  31.695  -4.999  1.00 25.00           C
ATOM     36  CA  SER    36     -10.487  29.771  -5.696  1.00 25.00           C
ATOM     37  CA  THR    37     -10.978  28.589  -9.256  1.00 25.00           C
ATOM     38  CA  GLN    38     -11.587  25.423 -11.300  1.00 25.00           C
ATOM     39  CA  PRO    39     -14.680  27.177 -12.612  1.00 25.00           C
ATOM     40  CA  PHE    40     -16.536  24.055 -11.424  1.00 25.00           C
ATOM     41  CA  PHE    41     -17.142  20.351 -12.288  1.00 25.00           C
ATOM     42  CA  MET    42     -20.931  20.815 -11.883  1.00 25.00           C
ATOM     43  CA  ASP    43     -23.946  22.472 -13.530  1.00 25.00           C
ATOM     44  CA  THR    44     -27.196  23.602 -11.819  1.00 25.00           C
ATOM     45  CA  MET    45     -26.241  23.372  -8.145  1.00 25.00           C
ATOM     46  CA  GLU    46     -29.712  21.947  -7.469  1.00 25.00           C
ATOM     47  CA  PRO    47     -28.553  19.034  -5.367  1.00 25.00           C
ATOM     48  CA  LEU    48     -29.410  16.867  -2.327  1.00 25.00           C
ATOM     49  CA  GLU    49     -27.318  13.994  -3.755  1.00 25.00           C
ATOM     50  CA  TRP    50     -24.379  16.383  -4.323  1.00 25.00           C
ATOM     51  CA  LEU    51     -24.682  17.651  -0.721  1.00 25.00           C
ATOM     52  CA  GLN    52     -24.708  14.047   0.572  1.00 25.00           C
ATOM     53  CA  TRP    53     -21.586  13.255  -1.501  1.00 25.00           C
ATOM     54  CA  VAL    54     -19.837  16.359  -0.098  1.00 25.00           C
ATOM     55  CA  LEU    55     -20.756  15.297   3.464  1.00 25.00           C
ATOM     56  CA  ILE    56     -19.378  11.786   2.800  1.00 25.00           C
ATOM     57  CA  PRO    57     -16.128  13.292   1.444  1.00 25.00           C
ATOM     58  CA  ARG    58     -15.826  15.505   4.557  1.00 25.00           C
ATOM     59  CA  MET    59     -16.373  12.455   6.808  1.00 25.00           C
ATOM     60  CA  HIS    60     -13.676  10.526   4.891  1.00 25.00           C
ATOM     61  CA  ASP    61     -11.257  13.470   5.282  1.00 25.00           C
ATOM     62  CA  LEU    62     -11.985  13.601   9.039  1.00 25.00           C
ATOM     63  CA  LEU    63     -11.342   9.836   9.320  1.00 25.00           C
ATOM     64  CA  ASP    64      -8.029  10.237   7.441  1.00 25.00           C
ATOM     65  CA  ASN    65      -6.370  11.853  10.407  1.00 25.00           C
ATOM     66  CA  LYS    66      -4.397  10.923  13.507  1.00 25.00           C
ATOM     67  CA  GLN    67      -6.408  13.329  15.601  1.00 25.00           C
ATOM     68  CA  PRO    68      -7.221  10.443  18.006  1.00 25.00           C
ATOM     69  CA  LEU    69      -9.829   8.833  15.696  1.00 25.00           C
ATOM     70  CA  PRO    70      -8.724   5.996  13.415  1.00 25.00           C
ATOM     71  CA  GLY    71     -11.231   4.952  10.712  1.00 25.00           C
ATOM     72  CA  ALA    72     -13.802   4.456   7.943  1.00 25.00           C
ATOM     73  CA  PHE    73     -16.437   3.538  10.567  1.00 25.00           C
ATOM     74  CA  ALA    74     -17.938   7.053  10.325  1.00 25.00           C
ATOM     75  CA  VAL    75     -18.063   6.764   6.508  1.00 25.00           C
ATOM     76  CA  ALA    76     -19.800   3.362   6.799  1.00 25.00           C
ATOM     77  CA  PRO    77     -22.352   4.847   9.238  1.00 25.00           C
ATOM     78  CA  TYR    78     -23.010   7.745   6.823  1.00 25.00           C
ATOM     79  CA  TYR    79     -23.511   5.268   3.946  1.00 25.00           C
ATOM     80  CA  GLU    80     -25.960   3.242   6.083  1.00 25.00           C
ATOM     81  CA  MET    81     -27.890   6.436   6.941  1.00 25.00           C
ATOM     82  CA  ALA    82     -28.052   7.366   3.229  1.00 25.00           C
ATOM     83  CA  LEU    83     -29.346   3.862   2.384  1.00 25.00           C
ATOM     84  CA  ALA    84     -32.017   4.162   5.112  1.00 25.00           C
ATOM     85  CA  THR    85     -34.579   3.806   2.362  1.00 25.00           C
ATOM     86  CA  ASP    86     -33.224   6.735   0.255  1.00 25.00           C
ATOM     87  CA  HIS    87     -32.435   4.150  -2.414  1.00 25.00           C
ATOM     88  CA  PRO    88     -30.832   4.332  -5.863  1.00 25.00           C
ATOM     89  CA  GLN    89     -27.917   6.761  -5.347  1.00 25.00           C
ATOM     90  CA  ARG    90     -27.668   5.719  -1.670  1.00 25.00           C
ATOM     91  CA  ALA    91     -27.643   2.029  -2.691  1.00 25.00           C
ATOM     92  CA  LEU    92     -24.873   2.728  -5.242  1.00 25.00           C
ATOM     93  CA  ILE    93     -22.833   4.553  -2.563  1.00 25.00           C
ATOM     94  CA  LEU    94     -23.283   1.596  -0.171  1.00 25.00           C
ATOM     95  CA  ALA    95     -22.140  -0.825  -2.910  1.00 25.00           C
ATOM     96  CA  GLU    96     -19.058   1.348  -3.578  1.00 25.00           C
ATOM     97  CA  LEU    97     -18.245   1.391   0.164  1.00 25.00           C
ATOM     98  CA  GLU    98     -18.581  -2.421   0.305  1.00 25.00           C
ATOM     99  CA  LYS    99     -16.251  -2.764  -2.715  1.00 25.00           C
ATOM    100  CA  LEU   100     -13.697  -0.456  -1.035  1.00 25.00           C
ATOM    101  CA  ASP   101     -13.887  -2.539   2.172  1.00 25.00           C
ATOM    102  CA  ALA   102     -13.348  -5.747   0.151  1.00 25.00           C
ATOM    103  CA  LEU   103     -10.318  -4.174  -1.584  1.00 25.00           C
ATOM    104  CA  PHE   104      -8.882  -3.136   1.812  1.00 25.00           C
ATOM    105  CA  ALA   105      -9.384  -6.694   3.138  1.00 25.00           C
ATOM    106  CA  ASP   106      -7.618  -8.120   0.054  1.00 25.00           C
ATOM    107  CA  ASP   107      -4.702  -5.690   0.570  1.00 25.00           C
ATOM    108  CA  ALA   108      -4.452  -6.732   4.248  1.00 25.00           C
ATOM    109  CA  SER   109      -4.427 -10.423   3.226  1.00 25.00           C
ATOM    110  CA  LEU   110      -6.273 -13.788   2.865  1.00 25.00           C
ATOM    111  CA  GLU   111      -8.798 -13.481   5.703  1.00 25.00           C
ATOM    112  CA  HIS   112      -7.247 -14.809   8.891  1.00 25.00           C
ATOM    113  CA  HIS   113      -3.499 -15.364   8.996  1.00 25.00           C
ATOM    114  CA  HIS   114      -3.278 -13.677  12.385  1.00 25.00           C
ATOM    115  CA  HIS   115      -0.299 -11.667  13.561  1.00 25.00           C
ATOM    116  CA  HIS   116      -1.342  -8.345  15.116  1.00 25.00           C
ATOM    117  CA  HIS   117      -2.428  -7.202  11.670  1.00 25.00           C
TER
END
