
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS393_1
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS393_1.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        68 - 107         4.93    15.61
  LONGEST_CONTINUOUS_SEGMENT:    40        69 - 108         4.85    15.78
  LONGEST_CONTINUOUS_SEGMENT:    40        70 - 109         4.76    15.88
  LCS_AVERAGE:     27.90

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         1 - 23          1.51    19.04
  LONGEST_CONTINUOUS_SEGMENT:    23         2 - 24          1.99    18.84
  LCS_AVERAGE:     12.61

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21         2 - 22          0.85    18.99
  LCS_AVERAGE:      9.07

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      4   23   27     3    4    4    9   12   22   22   23   23   23   24   25   26   28   28   29   33   35   36   39 
LCS_GDT     T       2     T       2     21   23   27     3    4    9   19   21   22   22   23   23   23   25   25   26   29   30   31   33   35   36   40 
LCS_GDT     T       3     T       3     21   23   27    10   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   33   36   38   42 
LCS_GDT     H       4     H       4     21   23   27    10   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   33   36   38   42 
LCS_GDT     D       5     D       5     21   23   27    10   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   33   36   38   42 
LCS_GDT     R       6     R       6     21   23   27    12   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   33   36   38   42 
LCS_GDT     V       7     V       7     21   23   27    12   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   33   36   38   45 
LCS_GDT     R       8     R       8     21   23   27    10   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   33   36   38   42 
LCS_GDT     L       9     L       9     21   23   27    11   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   33   36   38   42 
LCS_GDT     Q      10     Q      10     21   23   27    12   19   20   20   21   22   22   23   23   23   25   25   26   29   30   31   35   47   50   55 
LCS_GDT     L      11     L      11     21   23   27    10   19   20   20   21   22   22   23   23   23   25   25   26   29   31   42   47   49   57   60 
LCS_GDT     Q      12     Q      12     21   23   27    12   19   20   20   21   22   22   23   23   23   25   25   26   29   31   41   47   49   50   56 
LCS_GDT     A      13     A      13     21   23   27    12   19   20   20   21   22   22   23   23   23   25   25   26   29   36   41   43   49   52   57 
LCS_GDT     L      14     L      14     21   23   27    12   19   20   20   21   22   22   23   23   23   25   26   36   40   46   50   55   59   63   65 
LCS_GDT     E      15     E      15     21   23   27    12   19   20   20   21   22   22   23   23   23   25   32   36   38   46   50   55   59   63   65 
LCS_GDT     A      16     A      16     21   23   27    12   19   20   20   21   22   22   23   23   23   25   25   26   29   38   46   51   58   60   63 
LCS_GDT     L      17     L      17     21   23   27    12   19   20   20   21   22   22   23   23   23   25   26   33   37   40   46   53   58   60   64 
LCS_GDT     L      18     L      18     21   23   27    12   19   20   20   21   22   22   23   27   36   37   41   42   45   46   50   55   59   63   65 
LCS_GDT     R      19     R      19     21   23   27    12   19   20   20   21   22   22   23   23   23   35   41   42   44   46   50   55   59   63   65 
LCS_GDT     E      20     E      20     21   23   27    12   19   20   20   21   22   22   23   23   23   25   26   33   37   39   46   53   54   60   63 
LCS_GDT     H      21     H      21     21   23   27    12   19   20   20   21   22   22   23   23   23   25   26   41   43   44   46   53   54   60   63 
LCS_GDT     Q      22     Q      22     21   23   27    12   19   20   20   21   22   22   30   31   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     H      23     H      23      3   23   27     3    3    4   12   21   22   22   30   31   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     W      24     W      24      3   23   27     3    4    4    5   10   14   21   30   31   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     R      25     R      25      3    5   27     3    6   17   20   22   23   26   30   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     N      26     N      26      3    5   27     3    5    6   18   21   23   26   29   32   36   37   41   42   45   46   50   55   59   63   65 
LCS_GDT     D      27     D      27      3    5   27     3    9   17   20   21   23   24   29   32   36   37   41   42   45   46   50   55   59   63   65 
LCS_GDT     E      28     E      28      4    6   27     3    4    5    6    8   17   21   26   30   33   37   37   42   45   46   50   55   59   63   65 
LCS_GDT     P      29     P      29      4    6   22     3    4    5    6    6   12   19   26   29   33   35   37   42   45   46   50   55   59   63   65 
LCS_GDT     Q      30     Q      30      4    6   22     4    7   12   16   19   21   23   25   31   32   36   38   40   43   46   50   54   59   63   65 
LCS_GDT     P      31     P      31      4    6   22     3    4    5    6    7   10   25   29   32   32   36   38   40   43   45   50   53   55   59   61 
LCS_GDT     H      32     H      32      4    6   22     3    8   13   17   21   26   29   31   32   33   36   38   40   43   45   50   53   55   59   61 
LCS_GDT     Q      33     Q      33      4    6   22     3    7   13   17   21   26   29   31   32   33   36   38   40   43   45   50   53   55   59   61 
LCS_GDT     F      34     F      34      4    5   22     3    8   12   17   21   26   29   31   32   33   36   38   40   43   45   50   53   55   58   61 
LCS_GDT     N      35     N      35      3    5   22     3    3    5    5    5    8   10   11   14   33   36   38   39   42   45   49   52   55   58   60 
LCS_GDT     S      36     S      36      3    5   22     3    3    4    5    5    8   10   10   12   17   35   37   38   40   42   43   45   47   52   56 
LCS_GDT     T      37     T      37      4    5   22     3    3    4    5    5    8   10   10   12   14   20   21   24   28   32   36   40   43   47   50 
LCS_GDT     Q      38     Q      38      4    5   22     3    3    4    5    5    8   10   11   13   16   20   22   25   29   32   37   40   43   47   50 
LCS_GDT     P      39     P      39      4    7   22     3    3    4    7    7   10   11   11   13   16   20   21   24   28   32   35   39   43   44   46 
LCS_GDT     F      40     F      40      4    7   22     3    4    4    7    7   10   11   11   13   16   20   22   25   29   32   37   40   43   47   50 
LCS_GDT     F      41     F      41      3    7   22     3    4    5    7    7   10   11   11   14   17   20   24   26   30   36   40   41   45   47   50 
LCS_GDT     M      42     M      42      4    7   22     4    4    5    6    6   10   11   11   14   17   20   25   29   31   36   40   41   45   47   50 
LCS_GDT     D      43     D      43      4    7   22     4    4    4    7    7   10   11   14   16   22   23   25   29   31   36   40   41   45   47   50 
LCS_GDT     T      44     T      44      4    7   22     4    4    4    7    7   10   11   11   20   22   23   25   27   31   32   35   39   45   47   50 
LCS_GDT     M      45     M      45      4    7   22     4    4    4    6    6   10   11   11   14   17   20   25   27   31   36   40   41   45   47   50 
LCS_GDT     E      46     E      46      4    7   22     3    4    4    7    7   10   11   11   13   16   19   22   27   31   36   40   41   45   47   50 
LCS_GDT     P      47     P      47      4    7   23     3    4    5    7    7   10   11   11   15   17   20   25   27   31   36   40   41   45   47   50 
LCS_GDT     L      48     L      48      4    6   23     3    3    4    4    5    7   12   15   18   19   23   25   27   31   36   40   41   45   47   50 
LCS_GDT     E      49     E      49      5    6   23     3    4    5    5    5   10   11   11   13   17   20   24   27   30   36   40   41   45   47   50 
LCS_GDT     W      50     W      50      5    6   23     3    4    5    5    5   10   11   13   14   16   20   22   25   29   32   40   41   45   47   50 
LCS_GDT     L      51     L      51      5    6   23     3    4    5    6    7   10   11   13   16   16   20   25   27   31   36   40   41   45   47   50 
LCS_GDT     Q      52     Q      52      5    6   23     3    4    5    5    5    7   11   13   16   17   20   25   27   31   36   40   41   45   47   50 
LCS_GDT     W      53     W      53      5   13   23     3    3    5    5    7    8   11   13   16   19   23   25   27   31   36   40   41   45   47   50 
LCS_GDT     V      54     V      54      9   13   23     5    6   10   12   12   14   14   15   16   17   20   25   29   36   40   42   47   54   54   57 
LCS_GDT     L      55     L      55      9   13   23     5    6   10   12   12   14   14   15   16   18   26   30   34   39   44   49   52   55   58   61 
LCS_GDT     I      56     I      56      9   13   23     5    6    9   12   12   14   15   17   22   25   31   36   39   43   46   50   55   59   63   65 
LCS_GDT     P      57     P      57      9   13   23     4    7    9   12   12   14   14   15   21   25   31   36   40   43   46   50   54   59   63   65 
LCS_GDT     R      58     R      58      9   13   23     5    8   10   12   12   14   15   17   22   25   30   35   38   42   46   50   54   59   63   65 
LCS_GDT     M      59     M      59      9   13   23     5    8   10   12   12   14   15   17   22   28   32   35   38   42   46   50   55   59   63   65 
LCS_GDT     H      60     H      60      9   13   23     6    8   10   12   12   14   14   16   19   24   28   35   35   39   43   50   55   59   63   65 
LCS_GDT     D      61     D      61      9   13   23     6    8   10   12   12   14   15   17   22   25   32   35   38   42   46   50   55   59   63   65 
LCS_GDT     L      62     L      62      9   13   23     6    8   10   12   12   14   14   16   22   24   29   30   36   40   44   50   55   59   63   65 
LCS_GDT     L      63     L      63      9   13   23     6    8   10   12   12   14   14   15   17   20   22   25   27   33   39   46   51   55   58   65 
LCS_GDT     D      64     D      64      9   13   23     6    8   10   12   12   14   14   16   18   21   26   29   34   35   43   45   53   59   63   65 
LCS_GDT     N      65     N      65      9   13   23     6    8   10   12   12   14   15   17   22   25   32   35   36   41   46   50   55   59   63   65 
LCS_GDT     K      66     K      66      4   13   23     3    3    5    6   10   13   14   17   22   25   29   30   36   42   46   50   55   59   63   65 
LCS_GDT     Q      67     Q      67      5   11   23     3    5    6    6    9   12   14   16   22   24   26   30   36   41   44   50   53   59   63   65 
LCS_GDT     P      68     P      68      5    6   40     3    5    6    6    9   12   15   17   22   25   31   35   39   42   46   50   55   59   63   65 
LCS_GDT     L      69     L      69      5    6   40     3    5    6    6    9   12   14   16   22   24   26   33   38   42   46   50   55   59   63   65 
LCS_GDT     P      70     P      70      5    6   40     3    5    6    8   12   14   17   22   28   32   37   41   42   45   46   50   55   59   63   65 
LCS_GDT     G      71     G      71      5    6   40     3    5    6    8   12   14   17   22   28   33   37   41   42   45   46   50   55   59   63   65 
LCS_GDT     A      72     A      72      3    6   40     1    3    5    9   12   16   23   27   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     F      73     F      73      3    6   40     1    5    6    8   14   19   24   28   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A      74     A      74      3    5   40     3    3    4    5    8   15   19   26   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     V      75     V      75      3   10   40     3    3   12   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A      76     A      76      8   10   40     3    8    8    8   15   19   26   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     P      77     P      77      8   10   40     7    8   13   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     Y      78     Y      78      8   10   40     7    8    8   11   19   26   29   31   32   34   38   39   42   45   46   49   55   59   63   65 
LCS_GDT     Y      79     Y      79      8   10   40     7    8    8   10   19   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     E      80     E      80      8   10   40     7    8   13   17   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     M      81     M      81      8   10   40     7    8    8   13   19   26   29   31   32   34   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A      82     A      82      8   10   40     7    8    8    8   14   19   27   30   32   34   38   38   42   45   46   50   55   59   63   65 
LCS_GDT     L      83     L      83      8   10   40     7    8    8   12   19   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A      84     A      84      4   10   40     3    3    4    6   18   26   29   31   32   34   38   39   42   45   46   50   55   59   63   65 
LCS_GDT     T      85     T      85      4   10   40     3    3    6   10   14   20   24   27   29   32   35   38   41   43   45   48   53   54   59   63 
LCS_GDT     D      86     D      86      4    7   40     3    3    4    6    7   14   21   25   29   33   35   38   41   43   46   49   53   58   60   65 
LCS_GDT     H      87     H      87      4   20   40     3    3    6   13   18   24   27   30   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     P      88     P      88     15   20   40     4    8   15   20   22   23   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     Q      89     Q      89     15   20   40     4   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     R      90     R      90     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A      91     A      91     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     L      92     L      92     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     I      93     I      93     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     L      94     L      94     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A      95     A      95     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     E      96     E      96     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     L      97     L      97     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     E      98     E      98     15   20   40     4   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     K      99     K      99     15   20   40     7   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     L     100     L     100     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     D     101     D     101     15   20   40    10   13   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A     102     A     102     15   20   40     4   11   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     L     103     L     103     14   20   40     4    7   13   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     F     104     F     104     13   20   40     4    8   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A     105     A     105     11   20   40     4   10   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     D     106     D     106     11   20   40     4    8   17   20   22   26   29   31   32   36   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     D     107     D     107      3   20   40     3    3    4    8   11   15   19   25   30   34   38   41   42   45   46   50   55   59   63   65 
LCS_GDT     A     108     A     108      3    3   40     3    3    4    4    6    8   13   16   22   24   26   31   36   42   46   50   55   59   63   65 
LCS_GDT     S     109     S     109      3    3   40     3    3    4    5    6    9   11   14   22   24   26   30   36   41   44   50   53   59   63   65 
LCS_AVERAGE  LCS_A:  16.53  (   9.07   12.61   27.90 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     19     20     20     22     26     29     31     32     36     38     41     42     45     46     50     55     59     63     65 
GDT PERCENT_CA  11.01  17.43  18.35  18.35  20.18  23.85  26.61  28.44  29.36  33.03  34.86  37.61  38.53  41.28  42.20  45.87  50.46  54.13  57.80  59.63
GDT RMS_LOCAL    0.27   0.56   0.61   0.61   1.52   1.85   2.07   2.24   2.36   3.43   3.58   4.03   3.98   4.35   4.39   5.33   5.67   5.93   6.31   6.46
GDT RMS_ALL_CA  18.94  18.95  18.93  18.93  16.29  16.78  16.76  16.86  16.80  16.62  16.69  16.34  16.57  16.22  16.47  15.71  15.66  15.64  15.36  15.31

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         44.485
LGA    T       2      T       2         42.396
LGA    T       3      T       3         35.541
LGA    H       4      H       4         36.742
LGA    D       5      D       5         38.043
LGA    R       6      R       6         32.202
LGA    V       7      V       7         27.488
LGA    R       8      R       8         30.666
LGA    L       9      L       9         30.203
LGA    Q      10      Q      10         23.379
LGA    L      11      L      11         21.480
LGA    Q      12      Q      12         24.266
LGA    A      13      A      13         22.254
LGA    L      14      L      14         15.378
LGA    E      15      E      15         16.351
LGA    A      16      A      16         19.709
LGA    L      17      L      17         16.426
LGA    L      18      L      18         10.591
LGA    R      19      R      19         13.551
LGA    E      20      E      20         17.203
LGA    H      21      H      21         13.184
LGA    Q      22      Q      22          9.402
LGA    H      23      H      23         10.543
LGA    W      24      W      24         11.898
LGA    R      25      R      25          7.436
LGA    N      26      N      26         11.770
LGA    D      27      D      27         14.613
LGA    E      28      E      28         15.669
LGA    P      29      P      29         12.038
LGA    Q      30      Q      30          6.441
LGA    P      31      P      31          5.706
LGA    H      32      H      32          2.916
LGA    Q      33      Q      33          2.659
LGA    F      34      F      34          3.382
LGA    N      35      N      35          5.739
LGA    S      36      S      36          8.032
LGA    T      37      T      37         13.327
LGA    Q      38      Q      38         15.932
LGA    P      39      P      39         17.378
LGA    F      40      F      40         18.017
LGA    F      41      F      41         20.481
LGA    M      42      M      42         22.263
LGA    D      43      D      43         22.431
LGA    T      44      T      44         23.512
LGA    M      45      M      45         23.445
LGA    E      46      E      46         27.229
LGA    P      47      P      47         27.333
LGA    L      48      L      48         24.812
LGA    E      49      E      49         26.743
LGA    W      50      W      50         24.123
LGA    L      51      L      51         23.408
LGA    Q      52      Q      52         19.329
LGA    W      53      W      53         14.530
LGA    V      54      V      54         12.266
LGA    L      55      L      55         13.090
LGA    I      56      I      56          8.758
LGA    P      57      P      57          8.382
LGA    R      58      R      58         12.542
LGA    M      59      M      59         15.246
LGA    H      60      H      60         15.298
LGA    D      61      D      61         15.025
LGA    L      62      L      62         20.249
LGA    L      63      L      63         22.900
LGA    D      64      D      64         20.628
LGA    N      65      N      65         21.701
LGA    K      66      K      66         22.956
LGA    Q      67      Q      67         25.718
LGA    P      68      P      68         19.740
LGA    L      69      L      69         20.065
LGA    P      70      P      70         14.517
LGA    G      71      G      71         12.020
LGA    A      72      A      72          7.301
LGA    F      73      F      73          7.910
LGA    A      74      A      74          7.045
LGA    V      75      V      75          2.915
LGA    A      76      A      76          3.971
LGA    P      77      P      77          2.357
LGA    Y      78      Y      78          2.476
LGA    Y      79      Y      79          2.728
LGA    E      80      E      80          0.779
LGA    M      81      M      81          3.344
LGA    A      82      A      82          4.880
LGA    L      83      L      83          2.868
LGA    A      84      A      84          2.782
LGA    T      85      T      85          6.917
LGA    D      86      D      86          7.356
LGA    H      87      H      87          4.297
LGA    P      88      P      88          3.895
LGA    Q      89      Q      89          1.491
LGA    R      90      R      90          1.582
LGA    A      91      A      91          1.903
LGA    L      92      L      92          0.794
LGA    I      93      I      93          1.657
LGA    L      94      L      94          2.262
LGA    A      95      A      95          1.296
LGA    E      96      E      96          0.921
LGA    L      97      L      97          2.600
LGA    E      98      E      98          2.322
LGA    K      99      K      99          0.935
LGA    L     100      L     100          1.739
LGA    D     101      D     101          2.597
LGA    A     102      A     102          1.778
LGA    L     103      L     103          2.913
LGA    F     104      F     104          3.454
LGA    A     105      A     105          2.175
LGA    D     106      D     106          2.759
LGA    D     107      D     107          9.671
LGA    A     108      A     108         14.308
LGA    S     109      S     109         16.271

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     31    2.24    27.523    23.943     1.327

LGA_LOCAL      RMSD =  2.237  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.993  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 13.820  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.214865 * X  +  -0.880967 * Y  +  -0.421579 * Z  + -15.164555
  Y_new =  -0.849485 * X  +   0.044402 * Y  +  -0.525741 * Z  +   8.669927
  Z_new =   0.481880 * X  +   0.471089 * Y  +  -0.738828 * Z  +   1.322133 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.573972   -0.567620  [ DEG:   147.4778    -32.5223 ]
  Theta =  -0.502799   -2.638794  [ DEG:   -28.8082   -151.1918 ]
  Phi   =  -1.323056    1.818536  [ DEG:   -75.8055    104.1945 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS393_1                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS393_1.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   31   2.24  23.943    13.82
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS393_1
PFRMAT TS
TARGET T0352
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1     -25.528   5.195  23.019  1.00 25.00           C
ATOM      2  CA  THR     2     -24.223   8.749  22.579  1.00 25.00           C
ATOM      3  CA  THR     3     -23.508   8.363  18.882  1.00 25.00           C
ATOM      4  CA  HIS     4     -25.996  10.745  17.208  1.00 25.00           C
ATOM      5  CA  ASP     5     -23.639  13.695  17.844  1.00 25.00           C
ATOM      6  CA  ARG     6     -20.724  11.723  16.333  1.00 25.00           C
ATOM      7  CA  VAL     7     -22.849  10.892  13.257  1.00 25.00           C
ATOM      8  CA  ARG     8     -23.782  14.586  12.872  1.00 25.00           C
ATOM      9  CA  LEU     9     -20.088  15.570  13.116  1.00 25.00           C
ATOM     10  CA  GLN    10     -19.193  12.969  10.452  1.00 25.00           C
ATOM     11  CA  LEU    11     -21.953  14.324   8.167  1.00 25.00           C
ATOM     12  CA  GLN    12     -20.644  17.889   8.661  1.00 25.00           C
ATOM     13  CA  ALA    13     -17.094  16.730   7.809  1.00 25.00           C
ATOM     14  CA  LEU    14     -18.391  15.002   4.647  1.00 25.00           C
ATOM     15  CA  GLU    15     -20.246  18.195   3.633  1.00 25.00           C
ATOM     16  CA  ALA    16     -17.060  20.249   4.182  1.00 25.00           C
ATOM     17  CA  LEU    17     -15.067  17.777   2.041  1.00 25.00           C
ATOM     18  CA  LEU    18     -17.700  18.017  -0.730  1.00 25.00           C
ATOM     19  CA  ARG    19     -17.534  21.840  -0.591  1.00 25.00           C
ATOM     20  CA  GLU    20     -13.713  21.708  -0.833  1.00 25.00           C
ATOM     21  CA  HIS    21     -13.962  19.364  -3.853  1.00 25.00           C
ATOM     22  CA  GLN    22     -16.451  21.745  -5.526  1.00 25.00           C
ATOM     23  CA  HIS    23     -14.093  24.696  -4.890  1.00 25.00           C
ATOM     24  CA  TRP    24     -11.179  22.725  -6.402  1.00 25.00           C
ATOM     25  CA  ARG    25     -13.303  21.894  -9.478  1.00 25.00           C
ATOM     26  CA  ASN    26     -13.899  25.541 -10.486  1.00 25.00           C
ATOM     27  CA  ASP    27     -11.712  27.653  -8.171  1.00 25.00           C
ATOM     28  CA  GLU    28     -12.171  30.664 -10.545  1.00 25.00           C
ATOM     29  CA  PRO    29      -8.955  29.371 -12.132  1.00 25.00           C
ATOM     30  CA  GLN    30      -9.438  26.812 -14.908  1.00 25.00           C
ATOM     31  CA  PRO    31      -7.600  23.511 -15.067  1.00 25.00           C
ATOM     32  CA  HIS    32      -4.791  24.160 -12.546  1.00 25.00           C
ATOM     33  CA  GLN    33      -5.966  21.190 -10.434  1.00 25.00           C
ATOM     34  CA  PHE    34      -6.009  18.960 -13.548  1.00 25.00           C
ATOM     35  CA  ASN    35      -2.460  20.094 -14.438  1.00 25.00           C
ATOM     36  CA  SER    36      -1.022  17.075 -12.595  1.00 25.00           C
ATOM     37  CA  THR    37       1.290  15.038 -14.799  1.00 25.00           C
ATOM     38  CA  GLN    38      -1.978  13.888 -16.412  1.00 25.00           C
ATOM     39  CA  PRO    39      -4.557  11.446 -17.901  1.00 25.00           C
ATOM     40  CA  PHE    40      -6.997   9.716 -15.494  1.00 25.00           C
ATOM     41  CA  PHE    41     -10.195   8.158 -16.870  1.00 25.00           C
ATOM     42  CA  MET    42     -12.693  10.736 -18.240  1.00 25.00           C
ATOM     43  CA  ASP    43     -15.783  10.130 -20.374  1.00 25.00           C
ATOM     44  CA  THR    44     -18.366  12.740 -19.352  1.00 25.00           C
ATOM     45  CA  MET    45     -18.045  14.675 -16.126  1.00 25.00           C
ATOM     46  CA  GLU    46     -20.433  12.099 -14.777  1.00 25.00           C
ATOM     47  CA  PRO    47     -19.758  11.417 -11.111  1.00 25.00           C
ATOM     48  CA  LEU    48     -22.003  10.727  -8.085  1.00 25.00           C
ATOM     49  CA  GLU    49     -19.970   7.589  -7.261  1.00 25.00           C
ATOM     50  CA  TRP    50     -16.719   9.599  -7.504  1.00 25.00           C
ATOM     51  CA  LEU    51     -18.170  12.272  -5.176  1.00 25.00           C
ATOM     52  CA  GLN    52     -19.205   9.564  -2.673  1.00 25.00           C
ATOM     53  CA  TRP    53     -15.683   8.065  -2.802  1.00 25.00           C
ATOM     54  CA  VAL    54     -14.161  11.525  -2.192  1.00 25.00           C
ATOM     55  CA  LEU    55     -16.499  12.055   0.794  1.00 25.00           C
ATOM     56  CA  ILE    56     -15.499   8.642   2.215  1.00 25.00           C
ATOM     57  CA  PRO    57     -11.795   9.529   1.804  1.00 25.00           C
ATOM     58  CA  ARG    58     -12.371  12.866   3.593  1.00 25.00           C
ATOM     59  CA  MET    59     -14.162  11.052   6.451  1.00 25.00           C
ATOM     60  CA  HIS    60     -11.253   8.578   6.737  1.00 25.00           C
ATOM     61  CA  ASP    61      -8.761  11.482   6.848  1.00 25.00           C
ATOM     62  CA  LEU    62     -10.824  13.180   9.592  1.00 25.00           C
ATOM     63  CA  LEU    63     -10.888   9.917  11.596  1.00 25.00           C
ATOM     64  CA  ASP    64      -7.091   9.585  11.225  1.00 25.00           C
ATOM     65  CA  ASN    65      -6.025  13.169  11.707  1.00 25.00           C
ATOM     66  CA  LYS    66      -6.355  16.002  14.285  1.00 25.00           C
ATOM     67  CA  GLN    67      -7.445  14.209  17.498  1.00 25.00           C
ATOM     68  CA  PRO    68      -6.592  10.590  16.694  1.00 25.00           C
ATOM     69  CA  LEU    69     -10.088   9.023  16.805  1.00 25.00           C
ATOM     70  CA  PRO    70     -10.379   5.250  16.352  1.00 25.00           C
ATOM     71  CA  GLY    71     -12.371   3.927  13.430  1.00 25.00           C
ATOM     72  CA  ALA    72     -14.171   3.386  10.066  1.00 25.00           C
ATOM     73  CA  PHE    73     -17.325   3.280  12.236  1.00 25.00           C
ATOM     74  CA  ALA    74     -18.161   6.882  11.241  1.00 25.00           C
ATOM     75  CA  VAL    75     -17.688   5.996   7.545  1.00 25.00           C
ATOM     76  CA  ALA    76     -19.987   2.960   7.952  1.00 25.00           C
ATOM     77  CA  PRO    77     -22.633   5.160   9.635  1.00 25.00           C
ATOM     78  CA  TYR    78     -22.386   7.691   6.772  1.00 25.00           C
ATOM     79  CA  TYR    79     -22.797   4.872   4.212  1.00 25.00           C
ATOM     80  CA  GLU    80     -25.872   3.579   6.094  1.00 25.00           C
ATOM     81  CA  MET    81     -27.364   7.106   6.128  1.00 25.00           C
ATOM     82  CA  ALA    82     -26.742   7.433   2.363  1.00 25.00           C
ATOM     83  CA  LEU    83     -28.438   4.052   1.766  1.00 25.00           C
ATOM     84  CA  ALA    84     -31.442   5.158   3.867  1.00 25.00           C
ATOM     85  CA  THR    85     -33.642   7.446   1.783  1.00 25.00           C
ATOM     86  CA  ASP    86     -31.593   8.469  -1.259  1.00 25.00           C
ATOM     87  CA  HIS    87     -32.334   5.745  -3.885  1.00 25.00           C
ATOM     88  CA  PRO    88     -30.106   4.934  -6.867  1.00 25.00           C
ATOM     89  CA  GLN    89     -27.017   7.117  -6.267  1.00 25.00           C
ATOM     90  CA  ARG    90     -27.160   6.333  -2.521  1.00 25.00           C
ATOM     91  CA  ALA    91     -27.414   2.590  -3.289  1.00 25.00           C
ATOM     92  CA  LEU    92     -24.397   2.842  -5.636  1.00 25.00           C
ATOM     93  CA  ILE    93     -22.406   4.665  -2.919  1.00 25.00           C
ATOM     94  CA  LEU    94     -23.329   1.948  -0.384  1.00 25.00           C
ATOM     95  CA  ALA    95     -22.214  -0.764  -2.848  1.00 25.00           C
ATOM     96  CA  GLU    96     -18.893   1.064  -3.395  1.00 25.00           C
ATOM     97  CA  LEU    97     -18.376   1.308   0.391  1.00 25.00           C
ATOM     98  CA  GLU    98     -19.091  -2.436   0.757  1.00 25.00           C
ATOM     99  CA  LYS    99     -16.575  -3.213  -2.024  1.00 25.00           C
ATOM    100  CA  LEU   100     -13.949  -1.031  -0.290  1.00 25.00           C
ATOM    101  CA  ASP   101     -14.592  -2.844   3.021  1.00 25.00           C
ATOM    102  CA  ALA   102     -14.210  -6.229   1.270  1.00 25.00           C
ATOM    103  CA  LEU   103     -10.914  -5.072  -0.301  1.00 25.00           C
ATOM    104  CA  PHE   104      -9.656  -3.921   3.129  1.00 25.00           C
ATOM    105  CA  ALA   105     -10.604  -7.310   4.641  1.00 25.00           C
ATOM    106  CA  ASP   106      -8.748  -9.116   1.820  1.00 25.00           C
ATOM    107  CA  ASP   107      -5.660  -6.932   2.420  1.00 25.00           C
ATOM    108  CA  ALA   108      -5.803  -7.717   6.166  1.00 25.00           C
ATOM    109  CA  SER   109      -6.057 -11.460   5.397  1.00 25.00           C
ATOM    110  CA  LEU   110      -7.194 -14.250   7.691  1.00 25.00           C
ATOM    111  CA  GLU   111      -5.779 -11.970  10.367  1.00 25.00           C
ATOM    112  CA  HIS   112      -2.395 -13.645  10.020  1.00 25.00           C
ATOM    113  CA  HIS   113       0.520 -13.683   7.613  1.00 25.00           C
ATOM    114  CA  HIS   114       2.144 -10.547   9.054  1.00 25.00           C
ATOM    115  CA  HIS   115       2.871  -8.013  11.757  1.00 25.00           C
ATOM    116  CA  HIS   116       0.881  -5.361  13.720  1.00 25.00           C
ATOM    117  CA  HIS   117      -2.488  -6.826  12.650  1.00 25.00           C
TER
END
