
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS393_2
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS393_2.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39        69 - 107         4.89    16.07
  LONGEST_CONTINUOUS_SEGMENT:    39        70 - 108         4.82    16.17
  LONGEST_CONTINUOUS_SEGMENT:    39        71 - 109         4.98    16.12
  LCS_AVERAGE:     28.33

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         1 - 23          1.80    19.23
  LCS_AVERAGE:     12.83

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.60    18.89
  LCS_AVERAGE:      8.80

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3   23   27     3    3    3    4    8   11   15   19   22   23   24   25   26   27   28   29   31   36   37   39 
LCS_GDT     T       2     T       2      3   23   27     3    3    3    6   11   18   21   22   22   23   24   25   26   27   31   32   34   35   37   39 
LCS_GDT     T       3     T       3     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   37   39 
LCS_GDT     H       4     H       4     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   37   39 
LCS_GDT     D       5     D       5     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   37   39 
LCS_GDT     R       6     R       6     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   37   39 
LCS_GDT     V       7     V       7     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   37   39 
LCS_GDT     R       8     R       8     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   39   41 
LCS_GDT     L       9     L       9     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   39   41 
LCS_GDT     Q      10     Q      10     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   31   32   34   36   47   52 
LCS_GDT     L      11     L      11     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   33   40   43   45   51   54 
LCS_GDT     Q      12     Q      12     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   33   40   43   45   51   54 
LCS_GDT     A      13     A      13     20   23   27    13   19   20   20   21   21   21   22   22   23   24   25   26   29   33   40   43   45   51   54 
LCS_GDT     L      14     L      14     20   23   27    13   19   20   20   21   21   21   22   22   23   24   30   34   37   40   48   50   53   60   62 
LCS_GDT     E      15     E      15     20   23   27    13   19   20   20   21   21   21   22   22   23   24   30   34   39   42   48   50   53   60   62 
LCS_GDT     A      16     A      16     20   23   27    12   19   20   20   21   21   21   22   22   23   24   25   34   36   37   41   44   51   54   61 
LCS_GDT     L      17     L      17     20   23   27    12   19   20   20   21   21   21   22   22   23   24   25   26   36   40   46   50   53   55   61 
LCS_GDT     L      18     L      18     20   23   27    12   19   20   20   21   21   21   22   24   30   35   41   42   44   45   48   52   54   60   62 
LCS_GDT     R      19     R      19     20   23   27    12   19   20   20   21   21   21   22   22   30   35   41   42   44   45   48   50   53   60   62 
LCS_GDT     E      20     E      20     20   23   27    12   19   20   20   21   21   21   22   22   23   24   25   26   29   31   42   49   53   55   59 
LCS_GDT     H      21     H      21     20   23   27    12   19   20   20   21   21   21   22   22   23   24   33   36   36   45   47   49   53   55   59 
LCS_GDT     Q      22     Q      22     20   23   27    11   19   20   20   21   21   21   22   23   24   35   41   42   44   45   48   50   53   60   62 
LCS_GDT     H      23     H      23      3   23   27     3    3    4   12   21   21   21   22   23   24   30   41   42   44   45   47   49   53   57   62 
LCS_GDT     W      24     W      24      3   22   27     3    4    4    4    9   14   16   20   23   35   35   41   42   44   45   48   50   53   60   62 
LCS_GDT     R      25     R      25      5    6   27     3    4    7   14   23   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     N      26     N      26      5    6   27     3    4    6    8   21   27   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     D      27     D      27      5    8   27     3    3    5    7   12   15   25   33   34   35   37   41   42   44   46   50   52   54   60   62 
LCS_GDT     E      28     E      28      5    8   26     3    3    6   18   23   29   29   33   34   36   37   39   41   44   47   50   52   54   60   62 
LCS_GDT     P      29     P      29      5    8   21     3    4   16   20   24   29   29   31   33   36   37   39   41   43   47   50   52   54   60   62 
LCS_GDT     Q      30     Q      30      5    8   21     3    3   12   18   20   24   27   31   32   32   35   36   37   42   47   49   51   54   56   58 
LCS_GDT     P      31     P      31      5    8   21     3    4    5    5    8    8   12   16   20   25   28   32   35   40   42   45   49   52   55   57 
LCS_GDT     H      32     H      32      5    8   21     3    4    5    8   10   11   12   13   17   25   28   31   34   38   42   45   48   52   54   56 
LCS_GDT     Q      33     Q      33      5    8   21     3    4    5    5   10   11   12   13   20   25   28   31   35   40   42   45   48   52   55   57 
LCS_GDT     F      34     F      34      5    8   21     3    4    5    5    8    8   12   15   20   24   27   31   35   40   42   45   49   52   55   57 
LCS_GDT     N      35     N      35      3    5   21     3    5    9   14   17   22   25   28   28   29   32   33   35   40   42   45   48   52   55   57 
LCS_GDT     S      36     S      36      3    5   21     3    3    4    5   13   16   21   24   27   29   30   31   35   40   42   45   48   52   54   56 
LCS_GDT     T      37     T      37      3    5   21     3    3    4    5    6    8   16   20   24   29   30   31   34   40   42   45   48   52   54   56 
LCS_GDT     Q      38     Q      38      3    5   21     3    3    4    5    6    8    9   11   12   20   26   31   35   40   42   45   48   52   54   55 
LCS_GDT     P      39     P      39      4    5   21     3    4    4    5    7    8    9   11   12   14   16   21   26   31   36   42   47   49   49   53 
LCS_GDT     F      40     F      40      4    6   21     3    4    4    5    7    8   10   11   12   14   16   18   19   21   23   33   38   45   48   49 
LCS_GDT     F      41     F      41      4    6   21     3    4    4    5    7    8   10   11   12   14   16   19   26   33   42   45   47   49   52   55 
LCS_GDT     M      42     M      42      4    6   21     3    4    4    5    7    8   10   11   15   26   26   31   35   40   42   45   48   52   54   56 
LCS_GDT     D      43     D      43      4    6   21     3    4    4    5    7    8   13   16   22   26   26   27   33   40   42   45   48   52   54   56 
LCS_GDT     T      44     T      44      4    6   21     4    4    4    5    7    8   12   16   22   22   24   30   35   40   42   45   48   52   54   56 
LCS_GDT     M      45     M      45      4    6   23     4    4    4    4    6    8   12   16   17   23   26   31   35   40   42   45   48   52   54   56 
LCS_GDT     E      46     E      46      4    6   28     4    4    4    5    7    8   10   11   19   21   24   30   35   40   42   45   48   52   54   55 
LCS_GDT     P      47     P      47      4    6   28     4    4    4    6    8   11   14   16   19   23   26   31   35   40   42   45   48   52   54   55 
LCS_GDT     L      48     L      48      4    6   28     3    4    4    5    6   11   14   16   19   23   26   31   35   40   42   45   48   52   54   55 
LCS_GDT     E      49     E      49      5    6   28     3    4    5    6    8   11   14   16   19   21   24   26   35   40   42   45   48   52   54   55 
LCS_GDT     W      50     W      50      5    6   28     3    4    5    5    5    8   11   13   17   18   20   27   33   40   42   45   48   52   54   55 
LCS_GDT     L      51     L      51      5    6   28     3    4    5    5    5    8   11   13   17   23   26   31   35   40   42   45   48   52   54   55 
LCS_GDT     Q      52     Q      52      5    6   28     3    4    5    5    5    8   11   16   17   23   26   31   35   40   42   45   48   52   54   55 
LCS_GDT     W      53     W      53      5   13   28     3    3    5    6    8   11   14   16   19   23   26   31   35   40   42   45   48   52   54   56 
LCS_GDT     V      54     V      54      9   14   28     5    6    9   11   12   13   14   14   17   23   26   31   35   40   42   45   49   52   55   57 
LCS_GDT     L      55     L      55      9   14   28     5    6    9   11   12   13   14   16   19   23   26   31   35   40   42   45   49   52   55   57 
LCS_GDT     I      56     I      56      9   14   28     5    6    9   11   12   13   14   16   19   24   27   32   35   43   47   50   52   54   60   62 
LCS_GDT     P      57     P      57      9   14   28     4    6    9   11   12   13   14   16   18   24   27   32   36   43   47   50   52   54   57   62 
LCS_GDT     R      58     R      58      9   14   28     5    7    9   11   12   13   14   16   18   23   26   32   35   43   47   50   52   54   60   62 
LCS_GDT     M      59     M      59      9   14   28     5    7    9   11   12   13   14   15   18   19   25   32   35   43   47   50   52   54   60   62 
LCS_GDT     H      60     H      60      9   14   28     4    7    9   11   12   13   14   15   17   21   26   31   35   40   42   50   52   54   60   62 
LCS_GDT     D      61     D      61      9   14   28     4    7    9   11   12   13   14   16   18   23   26   32   35   43   47   50   52   54   60   62 
LCS_GDT     L      62     L      62      9   14   28     4    7    9   11   12   13   14   15   17   23   26   31   35   40   42   47   51   54   60   62 
LCS_GDT     L      63     L      63      9   14   28     4    7    9   11   12   13   14   14   17   18   21   30   34   40   42   45   48   52   55   61 
LCS_GDT     D      64     D      64      9   14   28     4    7    9   11   12   13   14   14   17   18   20   29   33   39   42   45   48   52   60   62 
LCS_GDT     N      65     N      65      9   14   28     3    5    8   10   12   13   14   16   18   23   26   32   35   43   47   50   52   54   60   62 
LCS_GDT     K      66     K      66      3   14   28     3    3    5    7   12   12   14   18   21   25   29   36   39   43   47   50   52   54   60   62 
LCS_GDT     Q      67     Q      67      4   14   31     3    4    5    9   11   13   14   15   18   23   25   32   34   38   42   47   51   54   60   62 
LCS_GDT     P      68     P      68      4    7   34     3    4    5    8    9   11   15   18   21   25   29   33   38   44   47   50   52   54   60   62 
LCS_GDT     L      69     L      69      4    7   39     3    4    4    8    9   11   15   19   21   25   29   33   38   44   47   50   52   54   60   62 
LCS_GDT     P      70     P      70      4    7   39     3    4    4    7   10   12   16   19   24   26   33   38   41   44   47   50   52   54   60   62 
LCS_GDT     G      71     G      71      4    6   39     3    4    6    9   11   14   18   20   24   28   34   39   41   44   47   50   52   54   60   62 
LCS_GDT     A      72     A      72      3    6   39     1    3    4    6   11   15   18   21   27   36   37   39   42   44   47   50   52   54   60   62 
LCS_GDT     F      73     F      73      3    6   39     0    3    5   10   12   14   18   27   30   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A      74     A      74      3    6   39     3    3    6    7   11   14   18   21   28   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     V      75     V      75      3   10   39     3    4   11   17   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A      76     A      76      8   10   39     3    8    8   11   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     P      77     P      77      8   10   39     7    8   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     Y      78     Y      78      8   10   39     7   12   16   19   23   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     Y      79     Y      79      8   10   39     7    8   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     E      80     E      80      8   10   39     7    8   13   18   23   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     M      81     M      81      8   10   39     7    8    8   14   19   26   28   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A      82     A      82      8   10   39     7    8    8    9   16   24   27   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     L      83     L      83      8   10   39     7    8    8   17   23   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A      84     A      84      4   10   39     3    6   10   17   21   26   28   33   34   36   37   41   42   44   46   50   52   54   60   62 
LCS_GDT     T      85     T      85      4    7   39     3    4    4    9   13   15   20   24   27   29   30   33   36   37   41   45   46   53   55   56 
LCS_GDT     D      86     D      86      4    7   39     3    4    4    6    9   17   19   24   27   29   32   33   37   43   43   47   49   53   55   59 
LCS_GDT     H      87     H      87      4   20   39     3    4    6   11   19   22   27   33   34   36   37   41   42   44   46   50   52   54   60   62 
LCS_GDT     P      88     P      88     15   20   39     4    8   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     Q      89     Q      89     15   20   39     4   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     R      90     R      90     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A      91     A      91     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     L      92     L      92     15   20   39    10   13   16   20   24   29   29   31   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     I      93     I      93     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     L      94     L      94     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A      95     A      95     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     E      96     E      96     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     L      97     L      97     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     E      98     E      98     15   20   39     4   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     K      99     K      99     15   20   39     7   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     L     100     L     100     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     D     101     D     101     15   20   39    10   13   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A     102     A     102     15   20   39     4   11   15   20   24   29   29   33   34   35   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     L     103     L     103     14   20   39     4    7   12   19   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     F     104     F     104     13   20   39     4    8   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A     105     A     105     11   20   39     4    9   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     D     106     D     106     11   20   39     4    8   16   20   24   29   29   33   34   36   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     D     107     D     107      3   20   39     3    4    5    8   12   15   20   25   27   30   37   41   42   44   47   50   52   54   60   62 
LCS_GDT     A     108     A     108      3    3   39     3    3    4    4    4    7   10   13   20   25   27   33   35   44   45   47   49   52   60   62 
LCS_GDT     S     109     S     109      3    3   39     3    3    4    4    4    7    9   17   19   25   27   33   35   40   42   45   48   52   54   61 
LCS_AVERAGE  LCS_A:  16.65  (   8.80   12.83   28.33 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     19     20     20     24     29     29     33     34     36     37     41     42     44     47     50     52     54     60     62 
GDT PERCENT_CA  11.93  17.43  18.35  18.35  22.02  26.61  26.61  30.28  31.19  33.03  33.94  37.61  38.53  40.37  43.12  45.87  47.71  49.54  55.05  56.88
GDT RMS_LOCAL    0.36   0.56   0.60   0.60   1.57   2.06   2.06   2.70   2.72   3.28   3.19   3.90   4.04   4.21   5.16   5.37   5.52   5.79   6.29   6.42
GDT RMS_ALL_CA  18.82  18.92  18.89  18.89  16.74  16.92  16.92  17.29  17.26  16.59  16.90  17.35  17.21  16.98  15.24  15.42  15.47  15.27  15.63  15.63

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         42.682
LGA    T       2      T       2         40.971
LGA    T       3      T       3         34.177
LGA    H       4      H       4         34.699
LGA    D       5      D       5         34.762
LGA    R       6      R       6         29.503
LGA    V       7      V       7         25.638
LGA    R       8      R       8         27.491
LGA    L       9      L       9         26.144
LGA    Q      10      Q      10         20.372
LGA    L      11      L      11         18.731
LGA    Q      12      Q      12         19.732
LGA    A      13      A      13         17.572
LGA    L      14      L      14         11.847
LGA    E      15      E      15         12.154
LGA    A      16      A      16         13.952
LGA    L      17      L      17         11.224
LGA    L      18      L      18          6.249
LGA    R      19      R      19          7.887
LGA    E      20      E      20         11.414
LGA    H      21      H      21          9.125
LGA    Q      22      Q      22          6.157
LGA    H      23      H      23          6.358
LGA    W      24      W      24          5.908
LGA    R      25      R      25          2.108
LGA    N      26      N      26          2.277
LGA    D      27      D      27          3.963
LGA    E      28      E      28          2.842
LGA    P      29      P      29          5.711
LGA    Q      30      Q      30         12.567
LGA    P      31      P      31         16.946
LGA    H      32      H      32         19.168
LGA    Q      33      Q      33         17.320
LGA    F      34      F      34         17.672
LGA    N      35      N      35         16.329
LGA    S      36      S      36         20.050
LGA    T      37      T      37         20.077
LGA    Q      38      Q      38         23.169
LGA    P      39      P      39         24.180
LGA    F      40      F      40         26.969
LGA    F      41      F      41         29.146
LGA    M      42      M      42         27.668
LGA    D      43      D      43         28.558
LGA    T      44      T      44         28.686
LGA    M      45      M      45         28.396
LGA    E      46      E      46         32.967
LGA    P      47      P      47         31.986
LGA    L      48      L      48         28.761
LGA    E      49      E      49         31.069
LGA    W      50      W      50         29.094
LGA    L      51      L      51         27.143
LGA    Q      52      Q      52         22.775
LGA    W      53      W      53         19.061
LGA    V      54      V      54         16.633
LGA    L      55      L      55         14.871
LGA    I      56      I      56          9.952
LGA    P      57      P      57          9.862
LGA    R      58      R      58         12.711
LGA    M      59      M      59         12.127
LGA    H      60      H      60         11.317
LGA    D      61      D      61         12.154
LGA    L      62      L      62         15.410
LGA    L      63      L      63         15.962
LGA    D      64      D      64         13.562
LGA    N      65      N      65         14.718
LGA    K      66      K      66         14.638
LGA    Q      67      Q      67         19.193
LGA    P      68      P      68         16.757
LGA    L      69      L      69         15.356
LGA    P      70      P      70         11.326
LGA    G      71      G      71          9.737
LGA    A      72      A      72          7.575
LGA    F      73      F      73          6.532
LGA    A      74      A      74          6.543
LGA    V      75      V      75          1.500
LGA    A      76      A      76          2.530
LGA    P      77      P      77          0.687
LGA    Y      78      Y      78          2.843
LGA    Y      79      Y      79          2.171
LGA    E      80      E      80          1.373
LGA    M      81      M      81          3.545
LGA    A      82      A      82          3.889
LGA    L      83      L      83          1.169
LGA    A      84      A      84          3.803
LGA    T      85      T      85          9.397
LGA    D      86      D      86          7.281
LGA    H      87      H      87          3.821
LGA    P      88      P      88          3.766
LGA    Q      89      Q      89          3.545
LGA    R      90      R      90          2.993
LGA    A      91      A      91          3.172
LGA    L      92      L      92          4.208
LGA    I      93      I      93          3.788
LGA    L      94      L      94          2.721
LGA    A      95      A      95          3.120
LGA    E      96      E      96          3.712
LGA    L      97      L      97          3.213
LGA    E      98      E      98          2.771
LGA    K      99      K      99          3.107
LGA    L     100      L     100          3.288
LGA    D     101      D     101          2.503
LGA    A     102      A     102          3.366
LGA    L     103      L     103          3.059
LGA    F     104      F     104          1.996
LGA    A     105      A     105          1.930
LGA    D     106      D     106          2.632
LGA    D     107      D     107          7.518
LGA    A     108      A     108         13.492
LGA    S     109      S     109         15.507

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     33    2.70    27.982    24.344     1.179

LGA_LOCAL      RMSD =  2.698  Number of atoms =   33  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.111  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 13.585  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.316866 * X  +   0.084256 * Y  +  -0.944721 * Z  + -15.561408
  Y_new =   0.325232 * X  +  -0.926005 * Y  +  -0.191672 * Z  +   6.950051
  Z_new =  -0.890966 * X  +  -0.367988 * Y  +   0.266016 * Z  +  -2.352561 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.944869    2.196723  [ DEG:   -54.1370    125.8630 ]
  Theta =   1.099468    2.042125  [ DEG:    62.9949    117.0051 ]
  Phi   =   2.343166   -0.798427  [ DEG:   134.2535    -45.7465 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS393_2                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS393_2.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   33   2.70  24.344    13.58
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS393_2
PFRMAT TS
TARGET T0352
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1     -19.814  10.923  22.338  1.00 25.00           C
ATOM      2  CA  THR     2     -20.069  14.207  20.402  1.00 25.00           C
ATOM      3  CA  THR     3     -18.910  13.705  16.832  1.00 25.00           C
ATOM      4  CA  HIS     4     -20.860  16.509  15.101  1.00 25.00           C
ATOM      5  CA  ASP     5     -17.583  18.303  14.261  1.00 25.00           C
ATOM      6  CA  ARG     6     -16.146  15.058  12.823  1.00 25.00           C
ATOM      7  CA  VAL     7     -19.298  14.573  10.703  1.00 25.00           C
ATOM      8  CA  ARG     8     -19.015  18.169   9.417  1.00 25.00           C
ATOM      9  CA  LEU     9     -15.337  17.588   8.524  1.00 25.00           C
ATOM     10  CA  GLN    10     -16.272  14.375   6.660  1.00 25.00           C
ATOM     11  CA  LEU    11     -19.000  16.255   4.740  1.00 25.00           C
ATOM     12  CA  GLN    12     -16.493  18.996   3.810  1.00 25.00           C
ATOM     13  CA  ALA    13     -14.010  16.346   2.593  1.00 25.00           C
ATOM     14  CA  LEU    14     -16.755  14.707   0.485  1.00 25.00           C
ATOM     15  CA  GLU    15     -17.660  18.109  -1.026  1.00 25.00           C
ATOM     16  CA  ALA    16     -13.975  18.748  -1.854  1.00 25.00           C
ATOM     17  CA  LEU    17     -13.726  15.307  -3.516  1.00 25.00           C
ATOM     18  CA  LEU    18     -16.872  16.044  -5.572  1.00 25.00           C
ATOM     19  CA  ARG    19     -15.405  19.412  -6.655  1.00 25.00           C
ATOM     20  CA  GLU    20     -12.143  17.687  -7.683  1.00 25.00           C
ATOM     21  CA  HIS    21     -14.119  15.100  -9.702  1.00 25.00           C
ATOM     22  CA  GLN    22     -16.069  17.906 -11.434  1.00 25.00           C
ATOM     23  CA  HIS    23     -12.791  19.700 -12.274  1.00 25.00           C
ATOM     24  CA  TRP    24     -11.354  16.454 -13.711  1.00 25.00           C
ATOM     25  CA  ARG    25     -14.507  15.970 -15.832  1.00 25.00           C
ATOM     26  CA  ASN    26     -13.245  19.135 -17.522  1.00 25.00           C
ATOM     27  CA  ASP    27     -10.340  21.487 -17.039  1.00 25.00           C
ATOM     28  CA  GLU    28      -9.716  20.949 -20.734  1.00 25.00           C
ATOM     29  CA  PRO    29      -8.312  17.872 -22.410  1.00 25.00           C
ATOM     30  CA  GLN    30     -10.549  15.172 -23.973  1.00 25.00           C
ATOM     31  CA  PRO    31     -10.291  11.944 -21.875  1.00 25.00           C
ATOM     32  CA  HIS    32      -8.125   9.642 -19.711  1.00 25.00           C
ATOM     33  CA  GLN    33     -11.018   9.201 -17.240  1.00 25.00           C
ATOM     34  CA  PHE    34     -13.387   8.351 -20.127  1.00 25.00           C
ATOM     35  CA  ASN    35     -10.879   5.782 -21.461  1.00 25.00           C
ATOM     36  CA  SER    36      -8.757   2.715 -20.528  1.00 25.00           C
ATOM     37  CA  THR    37     -11.168  -0.168 -19.771  1.00 25.00           C
ATOM     38  CA  GLN    38     -14.554  -0.102 -21.454  1.00 25.00           C
ATOM     39  CA  PRO    39     -17.838   0.445 -23.308  1.00 25.00           C
ATOM     40  CA  PHE    40     -19.409   3.891 -23.868  1.00 25.00           C
ATOM     41  CA  PHE    41     -22.862   4.548 -22.425  1.00 25.00           C
ATOM     42  CA  MET    42     -22.773   7.794 -20.374  1.00 25.00           C
ATOM     43  CA  ASP    43     -26.212   8.679 -21.775  1.00 25.00           C
ATOM     44  CA  THR    44     -26.228  11.673 -19.434  1.00 25.00           C
ATOM     45  CA  MET    45     -25.471  13.125 -16.053  1.00 25.00           C
ATOM     46  CA  GLU    46     -27.937  10.801 -14.409  1.00 25.00           C
ATOM     47  CA  PRO    47     -26.026  10.934 -11.121  1.00 25.00           C
ATOM     48  CA  LEU    48     -26.703   9.273  -7.738  1.00 25.00           C
ATOM     49  CA  GLU    49     -24.209   6.490  -8.577  1.00 25.00           C
ATOM     50  CA  TRP    50     -21.585   9.103  -9.551  1.00 25.00           C
ATOM     51  CA  LEU    51     -22.177  10.963  -6.257  1.00 25.00           C
ATOM     52  CA  GLN    52     -21.783   7.690  -4.309  1.00 25.00           C
ATOM     53  CA  TRP    53     -18.515   6.951  -6.163  1.00 25.00           C
ATOM     54  CA  VAL    54     -17.230  10.467  -5.350  1.00 25.00           C
ATOM     55  CA  LEU    55     -18.131   9.969  -1.661  1.00 25.00           C
ATOM     56  CA  ILE    56     -16.289   6.612  -1.638  1.00 25.00           C
ATOM     57  CA  PRO    57     -13.214   8.260  -3.218  1.00 25.00           C
ATOM     58  CA  ARG    58     -13.311  11.030  -0.575  1.00 25.00           C
ATOM     59  CA  MET    59     -13.539   8.405   2.205  1.00 25.00           C
ATOM     60  CA  HIS    60     -10.550   6.532   0.714  1.00 25.00           C
ATOM     61  CA  ASP    61      -8.547   9.793   0.570  1.00 25.00           C
ATOM     62  CA  LEU    62      -9.418  10.519   4.228  1.00 25.00           C
ATOM     63  CA  LEU    63      -8.305   6.991   5.218  1.00 25.00           C
ATOM     64  CA  ASP    64      -5.007   7.476   3.333  1.00 25.00           C
ATOM     65  CA  ASN    65      -3.690  10.926   2.417  1.00 25.00           C
ATOM     66  CA  LYS    66      -2.158  12.865   5.246  1.00 25.00           C
ATOM     67  CA  GLN    67      -3.419  13.311   8.851  1.00 25.00           C
ATOM     68  CA  PRO    68      -3.334  11.549  12.251  1.00 25.00           C
ATOM     69  CA  LEU    69      -6.395   9.433  11.271  1.00 25.00           C
ATOM     70  CA  PRO    70      -8.094   6.309  12.541  1.00 25.00           C
ATOM     71  CA  GLY    71     -10.546   5.497   9.673  1.00 25.00           C
ATOM     72  CA  ALA    72     -13.523   5.072   7.292  1.00 25.00           C
ATOM     73  CA  PHE    73     -15.972   5.409  10.218  1.00 25.00           C
ATOM     74  CA  ALA    74     -17.300   8.691   8.759  1.00 25.00           C
ATOM     75  CA  VAL    75     -17.762   7.015   5.347  1.00 25.00           C
ATOM     76  CA  ALA    76     -19.645   4.118   6.998  1.00 25.00           C
ATOM     77  CA  PRO    77     -21.901   6.602   8.843  1.00 25.00           C
ATOM     78  CA  TYR    78     -22.607   8.440   5.558  1.00 25.00           C
ATOM     79  CA  TYR    79     -23.479   5.119   3.860  1.00 25.00           C
ATOM     80  CA  GLU    80     -25.842   4.237   6.741  1.00 25.00           C
ATOM     81  CA  MET    81     -27.522   7.666   6.445  1.00 25.00           C
ATOM     82  CA  ALA    82     -27.947   7.160   2.673  1.00 25.00           C
ATOM     83  CA  LEU    83     -29.491   3.709   3.286  1.00 25.00           C
ATOM     84  CA  ALA    84     -31.902   5.216   5.852  1.00 25.00           C
ATOM     85  CA  THR    85     -32.225   8.861   5.041  1.00 25.00           C
ATOM     86  CA  ASP    86     -32.711   8.084   1.305  1.00 25.00           C
ATOM     87  CA  HIS    87     -32.551   4.777  -0.566  1.00 25.00           C
ATOM     88  CA  PRO    88     -32.219   2.242  -3.383  1.00 25.00           C
ATOM     89  CA  GLN    89     -29.409   4.090  -5.216  1.00 25.00           C
ATOM     90  CA  ARG    90     -27.661   4.791  -1.881  1.00 25.00           C
ATOM     91  CA  ALA    91     -27.957   1.095  -0.922  1.00 25.00           C
ATOM     92  CA  LEU    92     -26.481   0.074  -4.306  1.00 25.00           C
ATOM     93  CA  ILE    93     -23.577   2.521  -3.806  1.00 25.00           C
ATOM     94  CA  LEU    94     -22.940   1.088  -0.312  1.00 25.00           C
ATOM     95  CA  ALA    95     -22.943  -2.465  -1.741  1.00 25.00           C
ATOM     96  CA  GLU    96     -20.458  -1.402  -4.454  1.00 25.00           C
ATOM     97  CA  LEU    97     -18.196   0.177  -1.798  1.00 25.00           C
ATOM     98  CA  GLU    98     -18.346  -3.039   0.278  1.00 25.00           C
ATOM     99  CA  LYS    99     -17.434  -5.105  -2.815  1.00 25.00           C
ATOM    100  CA  LEU   100     -14.480  -2.776  -3.532  1.00 25.00           C
ATOM    101  CA  ASP   101     -13.296  -3.122   0.094  1.00 25.00           C
ATOM    102  CA  ALA   102     -13.540  -6.935  -0.164  1.00 25.00           C
ATOM    103  CA  LEU   103     -11.518  -6.870  -3.415  1.00 25.00           C
ATOM    104  CA  PHE   104      -8.855  -4.684  -1.744  1.00 25.00           C
ATOM    105  CA  ALA   105      -8.681  -7.112   1.211  1.00 25.00           C
ATOM    106  CA  ASP   106      -8.283 -10.059  -1.203  1.00 25.00           C
ATOM    107  CA  ASP   107      -5.473  -8.211  -3.035  1.00 25.00           C
ATOM    108  CA  ALA   108      -3.726  -7.511   0.299  1.00 25.00           C
ATOM    109  CA  SER   109      -4.021 -11.206   1.258  1.00 25.00           C
ATOM    110  CA  LEU   110      -2.282 -12.233  -1.897  1.00 25.00           C
ATOM    111  CA  GLU   111       0.644 -10.127  -0.743  1.00 25.00           C
ATOM    112  CA  HIS   112       2.448  -7.018   0.579  1.00 25.00           C
ATOM    113  CA  HIS   113       4.303  -9.457   2.863  1.00 25.00           C
ATOM    114  CA  HIS   114       4.905  -6.519   5.295  1.00 25.00           C
ATOM    115  CA  HIS   115       3.652  -7.977   8.586  1.00 25.00           C
ATOM    116  CA  HIS   116       1.691  -8.758  11.754  1.00 25.00           C
ATOM    117  CA  HIS   117      -1.563  -7.522  10.306  1.00 25.00           C
TER
END
