
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS599_1
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS599_1.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         2 - 27          4.93    22.94
  LONGEST_CONTINUOUS_SEGMENT:    26        81 - 106         4.93    28.20
  LONGEST_CONTINUOUS_SEGMENT:    26        82 - 107         4.59    28.20
  LONGEST_CONTINUOUS_SEGMENT:    26        83 - 108         4.81    27.37
  LONGEST_CONTINUOUS_SEGMENT:    26        84 - 109         4.85    28.61
  LCS_AVERAGE:     21.10

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22         2 - 23          1.90    22.83
  LCS_AVERAGE:     12.20

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.68    23.03
  LCS_AVERAGE:      8.66

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      0    4   25     0    0    3    4    4    5    5    6   11   18   22   24   28   30   33   37   39   42   44   45 
LCS_GDT     T       2     T       2      3   22   26     0    3    6    9   12   15   17   20   24   27   28   29   31   34   38   40   41   42   44   45 
LCS_GDT     T       3     T       3     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     H       4     H       4     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     D       5     D       5     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     R       6     R       6     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     V       7     V       7     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     R       8     R       8     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     L       9     L       9     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     Q      10     Q      10     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     L      11     L      11     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     Q      12     Q      12     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     A      13     A      13     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     L      14     L      14     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     E      15     E      15     20   22   26    12   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     A      16     A      16     20   22   26    11   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     L      17     L      17     20   22   26    11   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     L      18     L      18     20   22   26    11   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     R      19     R      19     20   22   26    11   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     E      20     E      20     20   22   26    11   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     H      21     H      21     20   22   26    11   19   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     Q      22     Q      22     20   22   26    11   17   20   20   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     H      23     H      23      3   22   26     3   11   14   20   20   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     W      24     W      24      3    5   26     3    3    4    6   12   14   22   22   22   23   25   27   30   31   36   38   40   42   44   45 
LCS_GDT     R      25     R      25      4    5   26     3    4    4    6   12   15   17   18   18   19   20   22   26   28   30   33   34   34   40   42 
LCS_GDT     N      26     N      26      4    6   26     3    4    4    5    6   10   12   14   17   19   20   22   26   28   30   33   34   34   40   42 
LCS_GDT     D      27     D      27      4    8   26     3    4    4    7    7   10   12   14   16   18   19   22   26   28   30   33   34   34   40   42 
LCS_GDT     E      28     E      28      4    8   19     3    4    5    7    8    8   10   11   16   18   18   19   21   23   25   27   31   32   35   39 
LCS_GDT     P      29     P      29      4    8   18     3    4    5    6    8    8   10   11   12   14   15   16   17   18   25   27   28   32   33   35 
LCS_GDT     Q      30     Q      30      4    8   18     3    4    5    7    8    8   10   11   12   14   15   16   17   23   25   27   29   32   33   38 
LCS_GDT     P      31     P      31      4    8   18     3    4    5    7    8    8   10   10   12   13   15   16   17   18   19   21   21   23   26   35 
LCS_GDT     H      32     H      32      4    8   18     3    4    5    7    8    8   10   10   12   13   15   16   17   19   19   22   24   35   35   37 
LCS_GDT     Q      33     Q      33      4    8   18     3    4    4    7    7    8   10   10   12   18   23   24   26   29   32   35   35   35   35   37 
LCS_GDT     F      34     F      34      4    8   18     3    4    5    7    8    8   10   10   12   21   21   24   26   29   31   35   35   35   35   37 
LCS_GDT     N      35     N      35      4    5   16     3    4    4    4    6   10   15   18   20   21   23   24   26   29   32   35   35   35   35   37 
LCS_GDT     S      36     S      36      4    5   15     3    4    4    5    8    8   10   10   11   18   23   24   26   29   32   35   35   35   35   37 
LCS_GDT     T      37     T      37      4    5   15     3    4    4    4    8    8   10   10   11   11   12   13   14   26   32   35   35   35   35   37 
LCS_GDT     Q      38     Q      38      4    5   15     3    4    4    4    5    5    6   10   11   11   12   13   14   15   18   35   35   35   35   37 
LCS_GDT     P      39     P      39      3    5   15     3    3    3    4    5    5    6    8    9    9   10   12   14   15   18   35   35   35   35   37 
LCS_GDT     F      40     F      40      4    5   15     3    3    4    4    5    6    7    8    9    9   10   19   23   26   32   35   35   35   35   37 
LCS_GDT     F      41     F      41      4    5   16     3    3    4    4    5    6    8   12   14   18   23   24   26   29   32   35   35   35   42   43 
LCS_GDT     M      42     M      42      4    5   16     3    3    4    4    5    7    8    8   10   13   13   13   17   22   31   33   38   40   44   44 
LCS_GDT     D      43     D      43      4    5   16     3    4    5    6    7    8    9   10   11   13   13   16   21   29   36   37   39   42   44   45 
LCS_GDT     T      44     T      44      4    5   16     3    4    5    6    7    8    9   10   11   13   13   14   19   24   31   35   38   42   44   45 
LCS_GDT     M      45     M      45      4    5   21     3    4    5    6    7    8    9   10   11   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     E      46     E      46      4    5   22     3    4    5    6    7    8    9   10   11   17   18   22   25   26   31   35   39   42   44   45 
LCS_GDT     P      47     P      47      4    5   22     3    4    5    6    8    9   10   13   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     L      48     L      48      3    6   22     3    3    4    6    6    9   10   13   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     E      49     E      49      5    6   22     3    5    5    5    7    9   10   12   14   17   18   22   25   26   31   35   39   42   44   44 
LCS_GDT     W      50     W      50      5    6   22     3    5    5    5    6    7    8   10   11   14   17   20   22   23   31   35   38   40   44   44 
LCS_GDT     L      51     L      51      5    6   22     3    5    5    5    6    8   13   14   15   18   22   24   26   29   36   37   39   42   44   45 
LCS_GDT     Q      52     Q      52      5    6   22     3    5    5    6    7    8    9   10   14   17   22   24   26   30   36   37   39   42   44   45 
LCS_GDT     W      53     W      53      5    6   22     3    3    5    6    8    9   13   14   15   17   22   24   26   29   31   35   39   42   44   45 
LCS_GDT     V      54     V      54      3    6   22     3    3    3    6    7    8   13   14   15   18   22   24   26   29   36   37   39   42   44   45 
LCS_GDT     L      55     L      55      3    4   22     3    3    3    6    7    8   10   12   14   17   22   24   26   30   36   37   39   42   44   45 
LCS_GDT     I      56     I      56      4   12   22     4    4    6    8   10   12   14   16   17   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     P      57     P      57      9   13   22     4    4    9   10   11   13   15   17   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     R      58     R      58      9   13   22     4    8    9   10   11   14   17   18   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     M      59     M      59      9   13   22     4    8    9   10   13   15   17   18   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     H      60     H      60      9   13   22     6    8    9   10   13   15   17   18   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     D      61     D      61      9   13   22     6    8    9   10   13   15   17   18   19   19   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     L      62     L      62      9   13   22     6    8    9   10   13   15   17   18   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     L      63     L      63      9   13   22     6    8    9   10   13   15   17   18   19   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     D      64     D      64      9   13   22     6    8    9   10   13   15   17   18   18   19   20   26   28   30   36   37   39   42   44   45 
LCS_GDT     N      65     N      65      9   13   22     6    8    9   10   13   15   17   18   18   19   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     K      66     K      66      4   13   22     3    3    4    6   13   15   17   18   18   21   23   26   28   30   36   37   39   42   44   45 
LCS_GDT     Q      67     Q      67      4   13   22     3    3    7   10   13   15   17   18   18   19   20   22   25   30   36   37   39   42   44   45 
LCS_GDT     P      68     P      68      4   13   22     3    5    5    7   13   15   17   18   18   19   20   22   25   27   31   34   37   42   44   45 
LCS_GDT     L      69     L      69      4   13   22     3    5    7    9   13   15   17   18   18   19   24   26   29   33   36   39   41   42   44   45 
LCS_GDT     P      70     P      70      4   12   22     3    5    5    8   13   16   18   21   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     G      71     G      71      4   10   22     3    4    7   11   21   21   22   22   24   27   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     A      72     A      72      6   10   22     3    5    6    8   13   15   17   18   18   19   22   24   29   30   38   40   41   41   44   45 
LCS_GDT     F      73     F      73      6    7   22     3    5    6    6    6    9   10   17   17   18   24   27   33   36   38   40   41   41   44   45 
LCS_GDT     A      74     A      74      6    8   21     3    5    6    6    7   10   18   22   23   26   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     V      75     V      75      6   10   21     3    5    6    6    9    9   10   13   19   23   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     A      76     A      76      8   10   18     4    8    8    8    9   14   18   20   22   26   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     P      77     P      77      8   10   18     7    8    8    8    9    9   11   13   17   21   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     Y      78     Y      78      8   10   18     7    8    8    8    9    9   11   13   13   14   18   22   25   30   34   36   39   41   44   44 
LCS_GDT     Y      79     Y      79      8   10   18     7    8    8    8    9    9   11   13   13   14   25   30   33   36   38   40   41   42   44   45 
LCS_GDT     E      80     E      80      8   10   19     7    8    8    8    9   17   20   22   24   26   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     M      81     M      81      8   10   26     7    8    8    8    9    9   11   13   13   14   24   25   33   36   38   40   41   42   44   45 
LCS_GDT     A      82     A      82      8   10   26     7    8    8    8    9    9   11   13   15   16   19   22   30   36   38   40   41   41   44   45 
LCS_GDT     L      83     L      83      8   10   26     7    8    8    8    9    9   11   13   16   26   28   30   33   36   38   40   41   42   44   45 
LCS_GDT     A      84     A      84      4   10   26     4    4    4    5    7   10   13   18   18   26   28   29   33   36   38   40   41   42   44   45 
LCS_GDT     T      85     T      85      4    5   26     4    4    4    4    7    9   11   13   15   18   19   22   26   28   34   36   36   41   44   44 
LCS_GDT     D      86     D      86      4    5   26     4    4    4    4    6    9   11   13   17   19   24   25   31   36   38   40   41   41   44   45 
LCS_GDT     H      87     H      87      4   20   26     4    4    6    9   12   15   18   22   24   27   28   29   33   36   38   40   41   42   44   45 
LCS_GDT     P      88     P      88     15   20   26     4    5   10   20   20   21   22   22   23   27   28   29   32   36   38   40   41   42   44   45 
LCS_GDT     Q      89     Q      89     15   20   26     4   12   14   20   20   21   22   22   22   27   28   29   31   36   38   40   41   42   44   45 
LCS_GDT     R      90     R      90     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   29   34   37   39   41   42   44   45 
LCS_GDT     A      91     A      91     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   37   42   44   45 
LCS_GDT     L      92     L      92     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   38 
LCS_GDT     I      93     I      93     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     L      94     L      94     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     A      95     A      95     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     E      96     E      96     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     L      97     L      97     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     E      98     E      98     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     K      99     K      99     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     L     100     L     100     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     D     101     D     101     15   20   26    10   12   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     A     102     A     102     15   20   26     5   10   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     L     103     L     103     12   20   26     5    7   12   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     F     104     F     104     11   20   26     5    8   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     A     105     A     105     11   20   26     5    8   14   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     D     106     D     106     11   20   26     4    8   13   20   20   21   22   22   22   23   24   25   26   29   32   35   35   35   35   37 
LCS_GDT     D     107     D     107      4   18   26     3    4    6    8   11   13   19   20   22   23   24   25   25   25   32   35   35   35   35   37 
LCS_GDT     A     108     A     108      4   10   26     3    4    6    7   10   16   19   20   21   23   24   25   25   25   26   27   31   33   33   35 
LCS_GDT     S     109     S     109      4    5   26     3    4    6    7    7   10   12   13   17   20   22   23   24   25   25   26   27   27   30   35 
LCS_AVERAGE  LCS_A:  13.99  (   8.66   12.20   21.10 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     19     20     20     21     21     22     22     24     27     28     30     33     36     38     40     41     42     44     45 
GDT PERCENT_CA  11.01  17.43  18.35  18.35  19.27  19.27  20.18  20.18  22.02  24.77  25.69  27.52  30.28  33.03  34.86  36.70  37.61  38.53  40.37  41.28
GDT RMS_LOCAL    0.30   0.60   0.68   0.68   1.47   1.09   1.61   1.61   2.14   2.98   2.95   3.29   3.88   4.24   4.50   4.74   4.90   5.77   5.37   5.83
GDT RMS_ALL_CA  22.64  22.97  23.03  23.03  23.51  22.95  23.43  23.43  23.40  23.39  23.66  23.74  23.84  23.65  23.70  23.75  23.60  24.83  23.64  22.98

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         14.003
LGA    T       2      T       2          7.760
LGA    T       3      T       3          1.407
LGA    H       4      H       4          2.124
LGA    D       5      D       5          1.546
LGA    R       6      R       6          0.766
LGA    V       7      V       7          1.392
LGA    R       8      R       8          1.292
LGA    L       9      L       9          0.959
LGA    Q      10      Q      10          1.248
LGA    L      11      L      11          1.319
LGA    Q      12      Q      12          0.302
LGA    A      13      A      13          1.376
LGA    L      14      L      14          1.341
LGA    E      15      E      15          0.562
LGA    A      16      A      16          1.022
LGA    L      17      L      17          1.211
LGA    L      18      L      18          0.349
LGA    R      19      R      19          1.173
LGA    E      20      E      20          1.736
LGA    H      21      H      21          0.534
LGA    Q      22      Q      22          1.747
LGA    H      23      H      23          3.166
LGA    W      24      W      24          8.278
LGA    R      25      R      25         14.461
LGA    N      26      N      26         15.919
LGA    D      27      D      27         17.099
LGA    E      28      E      28         23.341
LGA    P      29      P      29         24.550
LGA    Q      30      Q      30         25.614
LGA    P      31      P      31         31.385
LGA    H      32      H      32         30.259
LGA    Q      33      Q      33         28.219
LGA    F      34      F      34         31.126
LGA    N      35      N      35         32.741
LGA    S      36      S      36         33.661
LGA    T      37      T      37         33.652
LGA    Q      38      Q      38         30.171
LGA    P      39      P      39         30.199
LGA    F      40      F      40         29.296
LGA    F      41      F      41         28.060
LGA    M      42      M      42         27.058
LGA    D      43      D      43         23.631
LGA    T      44      T      44         29.018
LGA    M      45      M      45         30.243
LGA    E      46      E      46         36.585
LGA    P      47      P      47         38.884
LGA    L      48      L      48         35.997
LGA    E      49      E      49         36.046
LGA    W      50      W      50         34.546
LGA    L      51      L      51         34.252
LGA    Q      52      Q      52         29.708
LGA    W      53      W      53         23.936
LGA    V      54      V      54         23.463
LGA    L      55      L      55         21.386
LGA    I      56      I      56         16.339
LGA    P      57      P      57         20.714
LGA    R      58      R      58         19.959
LGA    M      59      M      59         15.714
LGA    H      60      H      60         21.903
LGA    D      61      D      61         24.469
LGA    L      62      L      62         19.125
LGA    L      63      L      63         22.248
LGA    D      64      D      64         28.524
LGA    N      65      N      65         27.196
LGA    K      66      K      66         23.421
LGA    Q      67      Q      67         19.344
LGA    P      68      P      68         14.206
LGA    L      69      L      69          9.647
LGA    P      70      P      70          5.630
LGA    G      71      G      71          3.942
LGA    A      72      A      72          9.964
LGA    F      73      F      73          8.763
LGA    A      74      A      74          6.296
LGA    V      75      V      75          7.062
LGA    A      76      A      76          6.088
LGA    P      77      P      77          6.995
LGA    Y      78      Y      78         10.423
LGA    Y      79      Y      79          6.946
LGA    E      80      E      80          4.916
LGA    M      81      M      81          9.214
LGA    A      82      A      82         10.204
LGA    L      83      L      83          7.428
LGA    A      84      A      84          9.078
LGA    T      85      T      85         15.411
LGA    D      86      D      86         12.610
LGA    H      87      H      87          9.570
LGA    P      88      P      88          9.229
LGA    Q      89      Q      89          8.131
LGA    R      90      R      90          7.912
LGA    A      91      A      91         12.592
LGA    L      92      L      92         16.952
LGA    I      93      I      93         17.009
LGA    L      94      L      94         18.870
LGA    A      95      A      95         23.268
LGA    E      96      E      96         26.482
LGA    L      97      L      97         27.818
LGA    E      98      E      98         29.617
LGA    K      99      K      99         34.441
LGA    L     100      L     100         36.302
LGA    D     101      D     101         38.463
LGA    A     102      A     102         40.609
LGA    L     103      L     103         43.178
LGA    F     104      F     104         45.253
LGA    A     105      A     105         48.417
LGA    D     106      D     106         51.279
LGA    D     107      D     107         49.967
LGA    A     108      A     108         49.298
LGA    S     109      S     109         45.069

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     22    1.61    23.165    20.092     1.283

LGA_LOCAL      RMSD =  1.614  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.431  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 17.679  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.641194 * X  +   0.021889 * Y  +  -0.767067 * Z  + -25.613842
  Y_new =   0.074693 * X  +   0.993066 * Y  +   0.090775 * Z  +   9.969917
  Z_new =   0.763735 * X  +  -0.115499 * Y  +   0.635113 * Z  +  -9.635647 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.179889    2.961703  [ DEG:   -10.3069    169.6931 ]
  Theta =  -0.869080   -2.272513  [ DEG:   -49.7946   -130.2054 ]
  Phi   =   0.115968   -3.025625  [ DEG:     6.6445   -173.3555 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS599_1                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS599_1.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   22   1.61  20.092    17.68
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS599_1
PFRMAT TS                                                                       
TARGET T0352                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1     -10.271  -9.728  -4.328  1.00  0.00              
ATOM      2  CA  THR     2      -6.961  -7.867  -4.983  1.00  0.00              
ATOM      3  CA  THR     3      -3.303  -6.480  -5.814  1.00  0.00              
ATOM      4  CA  HIS     4      -2.026  -2.701  -4.823  1.00  0.00              
ATOM      5  CA  ASP     5      -2.274  -1.706  -8.438  1.00  0.00              
ATOM      6  CA  ARG     6      -5.712  -3.163  -8.959  1.00  0.00              
ATOM      7  CA  VAL     7      -7.020  -1.426  -5.801  1.00  0.00              
ATOM      8  CA  ARG     8      -5.571   1.877  -6.909  1.00  0.00              
ATOM      9  CA  LEU     9      -7.105   1.567 -10.389  1.00  0.00              
ATOM     10  CA  GLN    10     -10.529   0.830  -8.916  1.00  0.00              
ATOM     11  CA  LEU    11     -10.315   3.751  -6.565  1.00  0.00              
ATOM     12  CA  GLN    12      -9.385   6.123  -9.431  1.00  0.00              
ATOM     13  CA  ALA    13     -12.354   4.808 -11.404  1.00  0.00              
ATOM     14  CA  LEU    14     -14.621   5.394  -8.352  1.00  0.00              
ATOM     15  CA  GLU    15     -13.376   8.947  -7.844  1.00  0.00              
ATOM     16  CA  ALA    16     -13.983   9.771 -11.547  1.00  0.00              
ATOM     17  CA  LEU    17     -17.482   8.346 -11.403  1.00  0.00              
ATOM     18  CA  LEU    18     -18.303  10.219  -8.221  1.00  0.00              
ATOM     19  CA  ARG    19     -17.078  13.491  -9.864  1.00  0.00              
ATOM     20  CA  GLU    20     -19.180  12.892 -13.007  1.00  0.00              
ATOM     21  CA  HIS    21     -22.229  12.219 -10.795  1.00  0.00              
ATOM     22  CA  GLN    22     -21.588  15.450  -8.796  1.00  0.00              
ATOM     23  CA  HIS    23     -21.895  17.306 -12.115  1.00  0.00              
ATOM     24  CA  TRP    24     -25.394  16.187 -13.314  1.00  0.00              
ATOM     25  CA  ARG    25     -27.289  16.970 -10.165  1.00  0.00              
ATOM     26  CA  ASN    26     -25.951  20.533 -10.263  1.00  0.00              
ATOM     27  CA  ASP    27     -26.256  21.658 -13.850  1.00  0.00              
ATOM     28  CA  GLU    28     -29.046  24.012 -14.574  1.00  0.00              
ATOM     29  CA  PRO    29     -28.475  26.140 -17.573  1.00  0.00              
ATOM     30  CA  GLN    30     -29.169  29.719 -16.662  1.00  0.00              
ATOM     31  CA  PRO    31     -32.575  31.106 -17.718  1.00  0.00              
ATOM     32  CA  HIS    32     -30.995  33.733 -19.856  1.00  0.00              
ATOM     33  CA  GLN    33     -28.779  31.246 -21.675  1.00  0.00              
ATOM     34  CA  PHE    34     -31.717  28.883 -22.405  1.00  0.00              
ATOM     35  CA  ASN    35     -33.802  31.752 -23.763  1.00  0.00              
ATOM     36  CA  SER    36     -31.066  33.014 -26.054  1.00  0.00              
ATOM     37  CA  THR    37     -30.396  29.937 -28.100  1.00  0.00              
ATOM     38  CA  GLN    38     -27.088  28.583 -26.691  1.00  0.00              
ATOM     39  CA  PRO    39     -27.485  25.112 -25.280  1.00  0.00              
ATOM     40  CA  PHE    40     -28.163  24.876 -21.524  1.00  0.00              
ATOM     41  CA  PHE    41     -28.289  21.476 -19.961  1.00  0.00              
ATOM     42  CA  MET    42     -30.695  20.369 -17.339  1.00  0.00              
ATOM     43  CA  ASP    43     -29.250  17.854 -14.961  1.00  0.00              
ATOM     44  CA  THR    44     -32.266  16.384 -13.347  1.00  0.00              
ATOM     45  CA  MET    45     -30.925  13.142 -12.014  1.00  0.00              
ATOM     46  CA  GLU    46     -32.835   9.963 -13.066  1.00  0.00              
ATOM     47  CA  PRO    47     -33.684   7.524 -10.328  1.00  0.00              
ATOM     48  CA  LEU    48     -31.401   4.711 -11.581  1.00  0.00              
ATOM     49  CA  GLU    49     -28.480   7.048 -11.924  1.00  0.00              
ATOM     50  CA  TRP    50     -29.078   8.353  -8.421  1.00  0.00              
ATOM     51  CA  LEU    51     -29.187   4.819  -6.947  1.00  0.00              
ATOM     52  CA  GLN    52     -25.900   3.923  -8.697  1.00  0.00              
ATOM     53  CA  TRP    53     -24.443   7.128  -7.346  1.00  0.00              
ATOM     54  CA  VAL    54     -25.481   6.560  -3.711  1.00  0.00              
ATOM     55  CA  LEU    55     -23.969   3.091  -3.872  1.00  0.00              
ATOM     56  CA  ILE    56     -20.795   3.334  -5.954  1.00  0.00              
ATOM     57  CA  PRO    57     -20.783   0.089  -7.874  1.00  0.00              
ATOM     58  CA  ARG    58     -17.075  -0.713  -7.707  1.00  0.00              
ATOM     59  CA  MET    59     -17.102  -0.110  -3.947  1.00  0.00              
ATOM     60  CA  HIS    60     -20.158  -2.390  -3.571  1.00  0.00              
ATOM     61  CA  ASP    61     -18.415  -5.144  -5.567  1.00  0.00              
ATOM     62  CA  LEU    62     -15.213  -4.888  -3.478  1.00  0.00              
ATOM     63  CA  LEU    63     -17.113  -5.077  -0.187  1.00  0.00              
ATOM     64  CA  ASP    64     -19.237  -7.981  -1.431  1.00  0.00              
ATOM     65  CA  ASN    65     -16.206  -9.977  -2.649  1.00  0.00              
ATOM     66  CA  LYS    66     -14.649  -9.946   0.820  1.00  0.00              
ATOM     67  CA  GLN    67     -11.384  -8.404  -0.175  1.00  0.00              
ATOM     68  CA  PRO    68     -10.038  -6.435   2.729  1.00  0.00              
ATOM     69  CA  LEU    69      -9.540  -2.792   1.903  1.00  0.00              
ATOM     70  CA  PRO    70      -6.022  -1.953   0.677  1.00  0.00              
ATOM     71  CA  GLY    71      -4.325   0.719   2.682  1.00  0.00              
ATOM     72  CA  ALA    72      -4.409   3.291  -0.171  1.00  0.00              
ATOM     73  CA  PHE    73      -8.137   2.889  -1.010  1.00  0.00              
ATOM     74  CA  ALA    74     -10.756   2.518   1.609  1.00  0.00              
ATOM     75  CA  VAL    75     -13.971   2.464  -0.327  1.00  0.00              
ATOM     76  CA  ALA    76     -16.470   1.653   2.492  1.00  0.00              
ATOM     77  CA  PRO    77     -16.174   5.020   4.167  1.00  0.00              
ATOM     78  CA  TYR    78     -16.764   6.960   0.884  1.00  0.00              
ATOM     79  CA  TYR    79     -19.772   4.964  -0.085  1.00  0.00              
ATOM     80  CA  GLU    80     -21.424   5.170   3.277  1.00  0.00              
ATOM     81  CA  MET    81     -20.922   8.880   3.426  1.00  0.00              
ATOM     82  CA  ALA    82     -22.297   9.685   0.029  1.00  0.00              
ATOM     83  CA  LEU    83     -25.432   7.573   0.375  1.00  0.00              
ATOM     84  CA  ALA    84     -26.239   8.975   3.807  1.00  0.00              
ATOM     85  CA  THR    85     -25.879  12.570   2.746  1.00  0.00              
ATOM     86  CA  ASP    86     -28.009  12.408  -0.324  1.00  0.00              
ATOM     87  CA  HIS    87     -31.175  10.785   1.030  1.00  0.00              
ATOM     88  CA  PRO    88     -33.201  13.879   0.263  1.00  0.00              
ATOM     89  CA  GLN    89     -32.034  14.200  -3.375  1.00  0.00              
ATOM     90  CA  ARG    90     -32.855  10.546  -4.051  1.00  0.00              
ATOM     91  CA  ALA    91     -36.336  10.937  -2.499  1.00  0.00              
ATOM     92  CA  LEU    92     -37.083  14.120  -4.394  1.00  0.00              
ATOM     93  CA  ILE    93     -36.186  12.559  -7.693  1.00  0.00              
ATOM     94  CA  LEU    94     -38.366   9.523  -6.986  1.00  0.00              
ATOM     95  CA  ALA    95     -41.363  11.697  -6.016  1.00  0.00              
ATOM     96  CA  GLU    96     -40.997  13.802  -9.156  1.00  0.00              
ATOM     97  CA  LEU    97     -40.790  10.644 -11.328  1.00  0.00              
ATOM     98  CA  GLU    98     -43.921   9.299  -9.683  1.00  0.00              
ATOM     99  CA  LYS    99     -45.759  12.582 -10.301  1.00  0.00              
ATOM    100  CA  LEU   100     -44.726  12.636 -13.919  1.00  0.00              
ATOM    101  CA  ASP   101     -45.888   9.006 -14.394  1.00  0.00              
ATOM    102  CA  ALA   102     -49.338   9.885 -13.045  1.00  0.00              
ATOM    103  CA  LEU   103     -49.489  12.859 -15.435  1.00  0.00              
ATOM    104  CA  PHE   104     -48.440  10.644 -18.364  1.00  0.00              
ATOM    105  CA  ALA   105     -51.167   8.142 -17.492  1.00  0.00              
ATOM    106  CA  ASP   106     -53.779  10.939 -17.306  1.00  0.00              
ATOM    107  CA  ASP   107     -52.766  12.232 -20.731  1.00  0.00              
ATOM    108  CA  ALA   108     -51.811  15.679 -19.629  1.00  0.00              
ATOM    109  CA  SER   109     -48.276  16.277 -21.002  1.00  0.00              
ATOM    110  CA  LEU   110     -46.041  17.127 -18.067  1.00  0.00              
ATOM    111  CA  GLU   111     -42.613  15.947 -19.256  1.00  0.00              
ATOM    112  CA  HIS   112     -40.497  19.049 -18.594  1.00  0.00              
ATOM    113  CA  HIS   113     -37.985  19.148 -21.400  1.00  0.00              
ATOM    114  CA  HIS   114     -34.793  17.899 -23.123  1.00  0.00              
ATOM    115  CA  HIS   115     -32.613  20.747 -22.804  1.00  0.00              
ATOM    116  CA  HIS   116     -29.611  20.684 -25.723  1.00  0.00              
ATOM    117  CA  HIS   117     -30.113  23.932 -28.369  1.00  0.00              
TER                                                                             
END
