
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS599_2
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS599_2.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34         1 - 34          4.86    24.05
  LCS_AVERAGE:     25.64

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         2 - 24          1.99    23.35
  LONGEST_CONTINUOUS_SEGMENT:    23         3 - 25          1.79    23.52
  LCS_AVERAGE:     13.27

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.52    22.85
  LCS_AVERAGE:      8.47

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      0    5   34     0    0    3    4    4    5    6   14   24   31   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     T       2     T       2      0   23   34     0    0    3    8   12   18   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     T       3     T       3     20   23   34    13   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     H       4     H       4     20   23   34    13   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     D       5     D       5     20   23   34    13   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     R       6     R       6     20   23   34    13   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     V       7     V       7     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     R       8     R       8     20   23   34    13   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     L       9     L       9     20   23   34    13   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     Q      10     Q      10     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     L      11     L      11     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     Q      12     Q      12     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     A      13     A      13     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     L      14     L      14     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     E      15     E      15     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     A      16     A      16     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     L      17     L      17     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     L      18     L      18     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     R      19     R      19     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     E      20     E      20     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     H      21     H      21     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     Q      22     Q      22     20   23   34    14   20   20   20   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     H      23     H      23      3   23   34     3    6    9   17   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     W      24     W      24      3   23   34     3    6    9   11   15   21   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     R      25     R      25      4   23   34     3    4    7   14   21   24   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     N      26     N      26      4    6   34     3    4    4    5    7   13   20   28   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     D      27     D      27      4    8   34     3    4    4    7    7    8   16   27   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     E      28     E      28      4    8   34     3    4    5    7    7    9   15   26   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     P      29     P      29      4    8   34     3    4    5    6    7    9   12   19   23   30   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     Q      30     Q      30      4    8   34     3    4    5    7    7    8   10   17   21   27   34   38   41   41   42   43   46   50   53   56 
LCS_GDT     P      31     P      31      4    8   34     3    4    5    7    7    8   10   13   15   16   22   26   35   37   39   42   46   50   53   56 
LCS_GDT     H      32     H      32      4    8   34     3    4    5    7    7    8    9   13   15   16   20   23   30   37   39   42   46   50   53   56 
LCS_GDT     Q      33     Q      33      4    8   34     3    4    4    7    7    8    9   12   15   16   20   24   32   37   39   42   46   50   53   56 
LCS_GDT     F      34     F      34      4    8   34     3    4    5    7    7    8    9   10   12   15   16   18   23   27   37   39   44   50   53   56 
LCS_GDT     N      35     N      35      4    5   14     3    4    4    4    5    6    8    9   10   11   14   16   18   19   22   23   24   27   31   32 
LCS_GDT     S      36     S      36      4    5   16     3    4    4    6    7    8    9   10   11   11   12   13   18   24   24   26   29   31   32   32 
LCS_GDT     T      37     T      37      4    5   19     3    4    4    4    7    8    9   10   11   11   17   18   21   24   24   26   29   31   32   33 
LCS_GDT     Q      38     Q      38      4    5   19     3    4    4    4    5    6    9   11   14   15   20   22   25   27   29   29   31   33   34   37 
LCS_GDT     P      39     P      39      4    5   19     3    3    4    8   12   15   17   19   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     F      40     F      40      4    8   19     3    6   11   12   16   17   20   20   21   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     F      41     F      41      4    8   19     3    4    6   10   13   15   16   16   20   23   24   25   29   31   32   33   34   35   38   40 
LCS_GDT     M      42     M      42      4    8   19     3    4    9   11   15   18   20   22   25   28   29   31   32   33   35   39   44   50   53   56 
LCS_GDT     D      43     D      43      4    8   19     3    4    6    6   11   15   16   17   20   20   22   27   29   34   38   42   46   50   53   56 
LCS_GDT     T      44     T      44      4    8   19     3    4    6    6    8    9   12   12   14   17   19   23   29   32   37   40   46   50   53   56 
LCS_GDT     M      45     M      45      4    8   25     3    4    6    6    8    8   12   14   17   19   21   27   29   32   36   40   43   49   53   56 
LCS_GDT     E      46     E      46      4    8   25     3    4    6    6    8    8   11   14   17   19   23   24   29   32   34   40   44   50   53   56 
LCS_GDT     P      47     P      47      4    8   25     3    4    5    6    8   10   11   14   17   19   23   27   29   32   37   40   46   50   53   56 
LCS_GDT     L      48     L      48      3    6   25     3    3    4    4    6    9   11   14   17   19   23   27   33   36   42   43   46   50   53   56 
LCS_GDT     E      49     E      49      5    6   25     4    4    5    5    7   10   11   14   17   19   23   24   26   27   27   29   30   31   43   46 
LCS_GDT     W      50     W      50      5    6   25     4    4    5    5    5    7    7    9   12   14   17   18   21   23   25   28   30   31   43   45 
LCS_GDT     L      51     L      51      5    6   25     4    4    5    6    7    8   10   11   12   15   18   21   21   23   25   27   38   41   43   48 
LCS_GDT     Q      52     Q      52      5    6   25     4    4    5    5    6    8    8   10   15   18   23   24   26   27   27   35   40   45   51   56 
LCS_GDT     W      53     W      53      5    6   25     3    3    5    5    8   10   11   14   17   19   23   24   26   27   27   29   38   41   47   54 
LCS_GDT     V      54     V      54      3    6   25     3    3    4    5    6    8   10   14   17   19   23   30   32   33   36   40   46   50   53   56 
LCS_GDT     L      55     L      55      3    4   25     3    3    4    5    6   23   26   27   28   29   30   31   35   38   42   43   46   50   53   56 
LCS_GDT     I      56     I      56      4   15   25     3    4    7   14   19   23   26   27   28   31   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     P      57     P      57      9   16   25     3    7    9   12   15   16   24   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     R      58     R      58      9   16   25     5    8    9   12   15   16   17   18   27   33   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     M      59     M      59      9   16   25     5    8    9   12   15   21   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     H      60     H      60      9   16   25     6    8    9   12   15   16   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     D      61     D      61      9   16   25     6    8    9   12   15   16   17   29   32   34   35   38   41   41   42   43   45   50   53   56 
LCS_GDT     L      62     L      62      9   16   25     6    8    9   12   15   16   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     L      63     L      63      9   16   25     6    8    9   12   15   16   17   18   19   20   23   27   38   40   42   43   45   50   53   56 
LCS_GDT     D      64     D      64      9   16   25     6    8    9   12   15   16   17   18   19   20   23   27   29   40   40   43   45   50   51   53 
LCS_GDT     N      65     N      65      9   16   25     6    8    9   12   15   16   17   18   19   20   23   24   37   40   40   43   45   50   51   55 
LCS_GDT     K      66     K      66      3   16   25     3    3    4    4   13   16   17   28   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     Q      67     Q      67      4   16   25     3    3    6   12   15   21   26   29   32   34   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     P      68     P      68      4   16   25     3    6    8   11   19   24   26   27   28   31   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     L      69     L      69      4   16   25     5    7    9   12   15   24   26   27   28   29   35   38   41   41   42   43   46   50   53   56 
LCS_GDT     P      70     P      70      4   16   25     3    5    9   12   15   16   17   18   19   24   26   30   35   38   41   42   46   49   53   56 
LCS_GDT     G      71     G      71      4   16   23     3    3    4    6    7   15   16   18   19   20   23   24   26   27   27   30   34   35   36   49 
LCS_GDT     A      72     A      72      5   16   23     3    4    9   10   15   16   17   18   19   20   23   24   26   27   27   30   34   35   36   39 
LCS_GDT     F      73     F      73      5    7   23     3    4    5    6    7    7   12   15   17   18   23   24   26   27   27   29   30   32   33   37 
LCS_GDT     A      74     A      74      5    7   23     3    4    5    6    7    7    7   10   13   13   14   15   22   27   27   28   30   31   32   35 
LCS_GDT     V      75     V      75      5   10   21     3    4    5    6    9    9   10   12   13   13   14   15   18   20   22   23   29   30   31   33 
LCS_GDT     A      76     A      76      8   10   19     3    8    8    8    9    9   11   12   13   13   14   15   17   20   22   23   25   26   28   32 
LCS_GDT     P      77     P      77      8   10   19     7    8    8    8    9    9   11   12   13   13   14   15   18   20   22   23   25   30   34   40 
LCS_GDT     Y      78     Y      78      8   10   19     7    8    8    8    9    9   11   12   13   13   13   14   17   18   20   25   27   34   35   40 
LCS_GDT     Y      79     Y      79      8   10   19     7    8    8    8    9    9   11   12   13   13   14   15   17   18   20   21   24   34   35   40 
LCS_GDT     E      80     E      80      8   10   28     7    8    8    8    9    9   11   12   13   13   16   18   19   22   24   30   32   35   37   40 
LCS_GDT     M      81     M      81      8   10   29     7    8    8    8    9    9   11   12   13   15   17   22   25   27   29   30   32   35   37   40 
LCS_GDT     A      82     A      82      8   10   29     7    8    8    8    9    9   11   12   13   15   19   23   25   27   29   30   33   35   37   40 
LCS_GDT     L      83     L      83      8   10   29     7    8    8    8    9    9   11   12   14   18   20   22   26   27   29   30   31   33   35   38 
LCS_GDT     A      84     A      84      4   10   29     4    7   10   14   17   20   20   20   21   23   23   24   26   27   29   30   33   35   37   39 
LCS_GDT     T      85     T      85      4    5   29     4    4    4    6   13   16   18   20   21   23   23   24   26   27   29   30   31   33   34   36 
LCS_GDT     D      86     D      86      4   16   29     4    4    7    8   10   13   16   18   19   23   23   24   26   27   29   30   31   33   33   35 
LCS_GDT     H      87     H      87      4   17   29     4    4    4    6    8   13   16   18   19   23   23   24   26   27   29   30   31   33   34   36 
LCS_GDT     P      88     P      88     14   19   29     4    8   14   18   19   20   20   20   22   23   24   24   26   27   29   31   33   35   37   40 
LCS_GDT     Q      89     Q      89     14   19   29     4   12   14   18   19   20   20   20   22   23   24   24   26   28   29   31   33   35   37   40 
LCS_GDT     R      90     R      90     14   19   29     5   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     A      91     A      91     14   19   29     5   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     L      92     L      92     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     I      93     I      93     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     L      94     L      94     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     A      95     A      95     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     E      96     E      96     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     L      97     L      97     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     E      98     E      98     14   19   29     7   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     K      99     K      99     14   19   29     7   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     L     100     L     100     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     D     101     D     101     14   19   29     8   12   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     A     102     A     102     14   19   29     5    7   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     L     103     L     103     11   19   29     5    7   11   15   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     F     104     F     104     11   19   29     5    7   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     A     105     A     105     11   19   29     5    7   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     D     106     D     106     11   19   29     4    7   14   18   19   20   20   20   22   23   24   24   27   28   29   31   33   35   37   40 
LCS_GDT     D     107     D     107      4   16   29     3    4    5   10   12   15   18   20   22   23   24   24   27   28   29   31   33   35   37   39 
LCS_GDT     A     108     A     108      4   10   29     3    4    5    8   11   15   18   20   22   23   24   24   27   28   29   31   33   35   37   39 
LCS_GDT     S     109     S     109      4    5   29     3    4    4    7    8   10   13   16   17   22   23   24   24   26   26   31   31   33   34   36 
LCS_AVERAGE  LCS_A:  15.79  (   8.47   13.27   25.64 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     20     20     20     21     24     26     29     32     34     35     38     41     41     42     43     46     50     53     56 
GDT PERCENT_CA  12.84  18.35  18.35  18.35  19.27  22.02  23.85  26.61  29.36  31.19  32.11  34.86  37.61  37.61  38.53  39.45  42.20  45.87  48.62  51.38
GDT RMS_LOCAL    0.28   0.52   0.52   0.52   1.19   1.71   1.91   2.72   3.15   3.32   3.39   3.75   4.11   4.11   4.43   4.41   5.43   5.57   6.12   6.43
GDT RMS_ALL_CA  22.88  22.85  22.85  22.85  23.03  23.51  23.61  24.67  25.06  25.11  25.14  25.01  24.85  24.85  24.65  24.97  24.40  24.74  24.27  24.24

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          7.951
LGA    T       2      T       2          3.259
LGA    T       3      T       3          1.411
LGA    H       4      H       4          3.181
LGA    D       5      D       5          2.890
LGA    R       6      R       6          1.204
LGA    V       7      V       7          2.769
LGA    R       8      R       8          3.215
LGA    L       9      L       9          2.516
LGA    Q      10      Q      10          1.523
LGA    L      11      L      11          3.352
LGA    Q      12      Q      12          3.572
LGA    A      13      A      13          1.826
LGA    L      14      L      14          2.537
LGA    E      15      E      15          3.199
LGA    A      16      A      16          2.683
LGA    L      17      L      17          2.705
LGA    L      18      L      18          2.885
LGA    R      19      R      19          2.138
LGA    E      20      E      20          2.695
LGA    H      21      H      21          3.120
LGA    Q      22      Q      22          1.823
LGA    H      23      H      23          1.085
LGA    W      24      W      24          2.202
LGA    R      25      R      25          3.435
LGA    N      26      N      26          6.449
LGA    D      27      D      27          7.516
LGA    E      28      E      28          8.746
LGA    P      29      P      29         10.294
LGA    Q      30      Q      30         11.173
LGA    P      31      P      31         13.346
LGA    H      32      H      32         13.254
LGA    Q      33      Q      33         11.653
LGA    F      34      F      34         13.395
LGA    N      35      N      35         19.115
LGA    S      36      S      36         20.136
LGA    T      37      T      37         21.747
LGA    Q      38      Q      38         20.395
LGA    P      39      P      39         21.187
LGA    F      40      F      40         20.184
LGA    F      41      F      41         16.473
LGA    M      42      M      42         11.879
LGA    D      43      D      43         10.864
LGA    T      44      T      44         12.192
LGA    M      45      M      45         12.467
LGA    E      46      E      46         12.790
LGA    P      47      P      47         11.649
LGA    L      48      L      48          9.118
LGA    E      49      E      49         15.602
LGA    W      50      W      50         16.844
LGA    L      51      L      51         15.023
LGA    Q      52      Q      52         12.775
LGA    W      53      W      53         13.884
LGA    V      54      V      54         11.825
LGA    L      55      L      55          9.301
LGA    I      56      I      56          6.750
LGA    P      57      P      57          3.715
LGA    R      58      R      58          5.500
LGA    M      59      M      59          3.601
LGA    H      60      H      60          3.485
LGA    D      61      D      61          4.706
LGA    L      62      L      62          3.207
LGA    L      63      L      63          6.992
LGA    D      64      D      64          8.644
LGA    N      65      N      65          7.993
LGA    K      66      K      66          4.730
LGA    Q      67      Q      67          2.433
LGA    P      68      P      68          8.045
LGA    L      69      L      69          9.528
LGA    P      70      P      70         12.822
LGA    G      71      G      71         18.163
LGA    A      72      A      72         21.854
LGA    F      73      F      73         22.686
LGA    A      74      A      74         26.676
LGA    V      75      V      75         24.762
LGA    A      76      A      76         29.687
LGA    P      77      P      77         33.865
LGA    Y      78      Y      78         33.199
LGA    Y      79      Y      79         29.229
LGA    E      80      E      80         33.369
LGA    M      81      M      81         36.899
LGA    A      82      A      82         33.582
LGA    L      83      L      83         33.003
LGA    A      84      A      84         38.283
LGA    T      85      T      85         38.903
LGA    D      86      D      86         32.950
LGA    H      87      H      87         31.575
LGA    P      88      P      88         31.742
LGA    Q      89      Q      89         27.573
LGA    R      90      R      90         28.244
LGA    A      91      A      91         33.149
LGA    L      92      L      92         31.862
LGA    I      93      I      93         29.839
LGA    L      94      L      94         34.248
LGA    A      95      A      95         37.817
LGA    E      96      E      96         35.950
LGA    L      97      L      97         36.642
LGA    E      98      E      98         42.037
LGA    K      99      K      99         43.837
LGA    L     100      L     100         42.183
LGA    D     101      D     101         45.523
LGA    A     102      A     102         50.962
LGA    L     103      L     103         51.880
LGA    F     104      F     104         51.378
LGA    A     105      A     105         56.046
LGA    D     106      D     106         59.520
LGA    D     107      D     107         61.059
LGA    A     108      A     108         62.012
LGA    S     109      S     109         59.775

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     29    2.72    25.688    22.930     1.030

LGA_LOCAL      RMSD =  2.716  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.894  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 17.383  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.086214 * X  +   0.647230 * Y  +   0.757404 * Z  +  -4.663764
  Y_new =   0.102824 * X  +  -0.761955 * Y  +   0.639415 * Z  +  17.002295
  Z_new =   0.990956 * X  +   0.022753 * Y  +  -0.132242 * Z  + -12.281694 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.971207   -0.170386  [ DEG:   170.2376     -9.7624 ]
  Theta =  -1.436205   -1.705387  [ DEG:   -82.2885    -97.7115 ]
  Phi   =   0.873040   -2.268553  [ DEG:    50.0215   -129.9785 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS599_2                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS599_2.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   29   2.72  22.930    17.38
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS599_2
PFRMAT TS                                                                       
TARGET T0352                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       0.275  -0.690 -12.696  1.00  0.00              
ATOM      2  CA  THR     2       0.041  -3.075  -9.244  1.00  0.00              
ATOM      3  CA  THR     3      -1.308  -4.529  -6.038  1.00  0.00              
ATOM      4  CA  HIS     4      -1.196  -2.443  -9.685  1.00  0.00              
ATOM      5  CA  ASP     5      -4.576  -3.922 -10.482  1.00  0.00              
ATOM      6  CA  ARG     6      -5.972  -2.896  -7.129  1.00  0.00              
ATOM      7  CA  VAL     7      -4.671   0.613  -7.544  1.00  0.00              
ATOM      8  CA  ARG     8      -6.175   0.898 -10.994  1.00  0.00              
ATOM      9  CA  LEU     9      -9.511  -0.348  -9.751  1.00  0.00              
ATOM     10  CA  GLN    10      -9.519   2.192  -6.936  1.00  0.00              
ATOM     11  CA  LEU    11      -8.624   5.001  -9.380  1.00  0.00              
ATOM     12  CA  GLN    12     -11.480   3.953 -11.684  1.00  0.00              
ATOM     13  CA  ALA    13     -13.842   4.033  -8.684  1.00  0.00              
ATOM     14  CA  LEU    14     -12.623   7.538  -7.782  1.00  0.00              
ATOM     15  CA  GLU    15     -13.109   8.721 -11.360  1.00  0.00              
ATOM     16  CA  ALA    16     -16.659   7.318 -11.466  1.00  0.00              
ATOM     17  CA  LEU    17     -17.578   8.994  -8.244  1.00  0.00              
ATOM     18  CA  LEU    18     -16.280  12.339  -9.348  1.00  0.00              
ATOM     19  CA  ARG    19     -18.230  12.084 -12.607  1.00  0.00              
ATOM     20  CA  GLU    20     -21.487  11.117 -10.847  1.00  0.00              
ATOM     21  CA  HIS    21     -21.306  14.340  -8.862  1.00  0.00              
ATOM     22  CA  GLN    22     -21.086  16.415 -12.068  1.00  0.00              
ATOM     23  CA  HIS    23     -17.902  18.098 -11.017  1.00  0.00              
ATOM     24  CA  TRP    24     -15.348  16.515 -13.336  1.00  0.00              
ATOM     25  CA  ARG    25     -17.225  17.135 -16.592  1.00  0.00              
ATOM     26  CA  ASN    26     -17.609  20.845 -15.714  1.00  0.00              
ATOM     27  CA  ASP    27     -14.199  21.884 -14.350  1.00  0.00              
ATOM     28  CA  GLU    28     -12.988  24.702 -16.517  1.00  0.00              
ATOM     29  CA  PRO    29     -11.005  27.353 -14.798  1.00  0.00              
ATOM     30  CA  GLN    30     -12.847  30.583 -15.217  1.00  0.00              
ATOM     31  CA  PRO    31     -11.722  33.084 -17.862  1.00  0.00              
ATOM     32  CA  HIS    32     -10.971  35.696 -15.210  1.00  0.00              
ATOM     33  CA  GLN    33      -8.632  33.271 -13.331  1.00  0.00              
ATOM     34  CA  PHE    34      -6.797  32.381 -16.512  1.00  0.00              
ATOM     35  CA  ASN    35      -6.328  36.096 -17.395  1.00  0.00              
ATOM     36  CA  SER    36      -4.547  36.846 -14.101  1.00  0.00              
ATOM     37  CA  THR    37      -2.070  33.929 -14.378  1.00  0.00              
ATOM     38  CA  GLN    38      -2.763  31.811 -11.344  1.00  0.00              
ATOM     39  CA  PRO    39      -4.408  28.548 -12.473  1.00  0.00              
ATOM     40  CA  PHE    40      -7.873  27.872 -11.189  1.00  0.00              
ATOM     41  CA  PHE    41      -9.771  24.687 -11.752  1.00  0.00              
ATOM     42  CA  MET    42     -12.201  23.451  -9.120  1.00  0.00              
ATOM     43  CA  ASP    43     -15.589  22.330 -10.401  1.00  0.00              
ATOM     44  CA  THR    44     -16.867  20.598  -7.224  1.00  0.00              
ATOM     45  CA  MET    45     -13.749  18.600  -6.416  1.00  0.00              
ATOM     46  CA  GLU    46     -13.294  18.907  -2.625  1.00  0.00              
ATOM     47  CA  PRO    47      -9.653  19.085  -1.470  1.00  0.00              
ATOM     48  CA  LEU    48      -9.661  15.782   0.338  1.00  0.00              
ATOM     49  CA  GLU    49     -11.174  13.910  -2.619  1.00  0.00              
ATOM     50  CA  TRP    50      -8.674  15.426  -4.949  1.00  0.00              
ATOM     51  CA  LEU    51      -5.674  14.542  -2.718  1.00  0.00              
ATOM     52  CA  GLN    52      -6.842  10.984  -2.296  1.00  0.00              
ATOM     53  CA  TRP    53      -7.326  10.549  -6.009  1.00  0.00              
ATOM     54  CA  VAL    54      -3.932  12.038  -6.865  1.00  0.00              
ATOM     55  CA  LEU    55      -1.940  10.012  -4.305  1.00  0.00              
ATOM     56  CA  ILE    56      -3.429   6.583  -4.517  1.00  0.00              
ATOM     57  CA  PRO    57      -4.112   5.727  -0.853  1.00  0.00              
ATOM     58  CA  ARG    58      -2.318   2.369  -0.530  1.00  0.00              
ATOM     59  CA  MET    59       0.804   3.825  -2.221  1.00  0.00              
ATOM     60  CA  HIS    60       0.845   6.854  -0.000  1.00  0.00              
ATOM     61  CA  ASP    61       0.648   4.727   3.116  1.00  0.00              
ATOM     62  CA  LEU    62       3.511   2.509   1.891  1.00  0.00              
ATOM     63  CA  LEU    63       5.725   5.483   1.071  1.00  0.00              
ATOM     64  CA  ASP    64       5.033   7.199   4.422  1.00  0.00              
ATOM     65  CA  ASN    65       5.696   4.068   6.404  1.00  0.00              
ATOM     66  CA  LYS    66       9.043   3.233   4.722  1.00  0.00              
ATOM     67  CA  GLN    67       7.844  -0.106   3.499  1.00  0.00              
ATOM     68  CA  PRO    68       9.480  -1.336   0.352  1.00  0.00              
ATOM     69  CA  LEU    69       7.236  -1.677  -2.525  1.00  0.00              
ATOM     70  CA  PRO    70       5.411  -4.868  -3.310  1.00  0.00              
ATOM     71  CA  GLY    71       7.177  -6.924  -6.013  1.00  0.00              
ATOM     72  CA  ALA    72       4.765  -6.090  -8.820  1.00  0.00              
ATOM     73  CA  PHE    73       4.664  -2.314  -8.291  1.00  0.00              
ATOM     74  CA  ALA    74       7.357   0.287  -8.001  1.00  0.00              
ATOM     75  CA  VAL    75       5.530   2.860  -5.913  1.00  0.00              
ATOM     76  CA  ALA    76       7.028   6.177  -6.839  1.00  0.00              
ATOM     77  CA  PRO    77       6.566   5.731 -10.635  1.00  0.00              
ATOM     78  CA  TYR    78       3.036   4.431 -10.425  1.00  0.00              
ATOM     79  CA  TYR    79       1.659   7.153  -8.186  1.00  0.00              
ATOM     80  CA  GLU    80       3.258   9.882 -10.327  1.00  0.00              
ATOM     81  CA  MET    81       1.867   8.453 -13.590  1.00  0.00              
ATOM     82  CA  ALA    82      -1.621   8.102 -12.272  1.00  0.00              
ATOM     83  CA  LEU    83      -1.776  11.643 -10.930  1.00  0.00              
ATOM     84  CA  ALA    84      -0.515  13.083 -14.225  1.00  0.00              
ATOM     85  CA  THR    85      -2.991  11.188 -16.405  1.00  0.00              
ATOM     86  CA  ASP    86      -5.998  12.180 -14.289  1.00  0.00              
ATOM     87  CA  HIS    87      -5.243  15.920 -14.297  1.00  0.00              
ATOM     88  CA  PRO    88      -4.772  16.261 -18.073  1.00  0.00              
ATOM     89  CA  GLN    89      -7.267  19.011 -19.105  1.00  0.00              
ATOM     90  CA  ARG    90      -5.910  21.198 -16.247  1.00  0.00              
ATOM     91  CA  ALA    91      -2.317  20.624 -17.387  1.00  0.00              
ATOM     92  CA  LEU    92      -3.181  21.563 -21.002  1.00  0.00              
ATOM     93  CA  ILE    93      -4.915  24.716 -19.698  1.00  0.00              
ATOM     94  CA  LEU    94      -1.854  25.626 -17.584  1.00  0.00              
ATOM     95  CA  ALA    95       0.376  25.096 -20.672  1.00  0.00              
ATOM     96  CA  GLU    96      -1.904  27.320 -22.763  1.00  0.00              
ATOM     97  CA  LEU    97      -1.819  30.057 -20.072  1.00  0.00              
ATOM     98  CA  GLU    98       1.986  29.961 -20.120  1.00  0.00              
ATOM     99  CA  LYS    99       1.890  30.350 -23.914  1.00  0.00              
ATOM    100  CA  LEU   100      -0.450  33.315 -23.633  1.00  0.00              
ATOM    101  CA  ASP   101       1.959  34.916 -21.161  1.00  0.00              
ATOM    102  CA  ALA   102       4.696  34.649 -23.792  1.00  0.00              
ATOM    103  CA  LEU   103       2.393  36.289 -26.371  1.00  0.00              
ATOM    104  CA  PHE   104       1.573  39.131 -23.925  1.00  0.00              
ATOM    105  CA  ALA   105       5.266  39.769 -23.328  1.00  0.00              
ATOM    106  CA  ASP   106       6.119  39.877 -27.058  1.00  0.00              
ATOM    107  CA  ASP   107       3.288  42.255 -27.991  1.00  0.00              
ATOM    108  CA  ALA   108       1.326  39.832 -30.105  1.00  0.00              
ATOM    109  CA  SER   109      -2.360  39.837 -29.029  1.00  0.00              
ATOM    110  CA  LEU   110      -3.490  36.400 -27.889  1.00  0.00              
ATOM    111  CA  GLU   111      -6.569  37.439 -25.863  1.00  0.00              
ATOM    112  CA  HIS   112      -9.478  35.411 -27.086  1.00  0.00              
ATOM    113  CA  HIS   113     -12.291  37.871 -26.355  1.00  0.00              
ATOM    114  CA  HIS   114     -10.270  38.775 -29.465  1.00  0.00              
ATOM    115  CA  HIS   115      -8.823  42.367 -27.803  1.00  0.00              
ATOM    116  CA  HIS   116      -5.994  43.855 -30.525  1.00  0.00              
ATOM    117  CA  HIS   117      -2.553  43.940 -28.410  1.00  0.00              
TER                                                                             
END
