
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS599_3
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS599_3.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33         2 - 34          4.95    25.06
  LCS_AVERAGE:     25.64

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21         2 - 22          1.70    21.12
  LONGEST_CONTINUOUS_SEGMENT:    21         3 - 23          1.51    20.68
  LCS_AVERAGE:     12.05

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.61    20.86
  LCS_AVERAGE:      8.85

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    4   29     0    3    4    5    6    6   13   16   16   17   20   23   24   27   28   33   39   39   42   42 
LCS_GDT     T       2     T       2      3   21   33     0    3    4    5    7   11   13   21   22   23   23   25   29   32   33   35   39   41   42   42 
LCS_GDT     T       3     T       3     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   37   39   44   50   55 
LCS_GDT     H       4     H       4     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   42   50   55 
LCS_GDT     D       5     D       5     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   40   44   48   50   55 
LCS_GDT     R       6     R       6     20   21   33    13   19   20   20   21   21   21   23   23   26   26   30   32   35   36   40   44   48   50   55 
LCS_GDT     V       7     V       7     20   21   33    13   19   20   20   21   21   21   23   23   25   26   30   32   35   36   40   44   48   50   55 
LCS_GDT     R       8     R       8     20   21   33    13   19   20   20   21   21   21   23   23   26   26   29   32   35   35   40   44   48   50   55 
LCS_GDT     L       9     L       9     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   43   48   50   55 
LCS_GDT     Q      10     Q      10     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   43   48   50   55 
LCS_GDT     L      11     L      11     20   21   33    13   19   20   20   21   21   21   23   23   24   26   29   32   35   35   39   44   48   50   55 
LCS_GDT     Q      12     Q      12     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   48 
LCS_GDT     A      13     A      13     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   48 
LCS_GDT     L      14     L      14     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     E      15     E      15     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     A      16     A      16     20   21   33    13   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     L      17     L      17     20   21   33    11   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     L      18     L      18     20   21   33    11   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     R      19     R      19     20   21   33    11   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     E      20     E      20     20   21   33    11   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     H      21     H      21     20   21   33    11   19   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     Q      22     Q      22     20   21   33     6   17   20   20   21   21   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     H      23     H      23      4   21   33     3    3    5   10   15   18   21   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     W      24     W      24      4    6   33     3    3    5    8    9   14   20   23   23   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     R      25     R      25      4    6   33     3    4    5    8    9   14   18   22   23   24   26   28   32   35   35   36   39   41   43   47 
LCS_GDT     N      26     N      26      4    6   33     3    4    4    5    7    9   11   14   21   25   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     D      27     D      27      4    8   33     3    4    4    8    8    8   11   12   15   18   22   24   32   35   35   36   39   41   43   47 
LCS_GDT     E      28     E      28      4    8   33     3    4    5    8    8    8   11   12   15   19   22   29   32   35   35   36   39   41   43   47 
LCS_GDT     P      29     P      29      4    8   33     3    4    5    6    7    8   11   12   23   26   26   29   32   35   35   36   39   41   43   47 
LCS_GDT     Q      30     Q      30      4    8   33     3    4    5    8    8    8   19   20   23   26   26   28   32   35   35   38   41   48   50   52 
LCS_GDT     P      31     P      31      4    8   33     3    4    5   12   17   20   21   23   25   26   28   30   32   35   36   38   44   48   50   55 
LCS_GDT     H      32     H      32      4    8   33     5    9   13   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     Q      33     Q      33      4    8   33     5    9   13   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     F      34     F      34      4    8   33     3    4   11   12   15   17   21   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     N      35     N      35      4    5   32     3    4    4    4    5    7    7   11   17   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     S      36     S      36      4    5   14     3    4    4    6    7    8    9   11   22   25   28   29   30   35   36   40   44   45   50   55 
LCS_GDT     T      37     T      37      4    5   20     3    4    4    6    7    8    9   11   17   25   28   29   30   35   36   40   44   46   50   55 
LCS_GDT     Q      38     Q      38      4    5   20     3    4    4    6    6   10   13   20   22   25   28   29   30   35   36   40   44   48   50   55 
LCS_GDT     P      39     P      39      4    5   20     3    4    4    6    7    9   13   16   19   25   28   29   32   35   36   40   44   48   50   55 
LCS_GDT     F      40     F      40      4    8   20     3    4    5    9   15   17   20   23   23   24   25   27   28   33   36   40   44   48   50   55 
LCS_GDT     F      41     F      41      4    8   20     3    4    5    6   15   17   19   23   23   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     M      42     M      42      6    8   20     3    4    6   17   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     D      43     D      43      6    8   23     3    4    6    6    7    8   21   22   23   26   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     T      44     T      44      6    8   23     3    4    6    8   13   17   20   21   23   26   26   29   30   33   35   38   41   48   50   55 
LCS_GDT     M      45     M      45      6    8   23     3    4    6    6    7    8   11   19   22   24   28   29   30   32   35   38   41   48   50   55 
LCS_GDT     E      46     E      46      6    8   23     3    4    6    6    7    8   11   13   15   19   19   21   24   26   27   31   33   37   38   41 
LCS_GDT     P      47     P      47      6    8   23     3    4    6    6    7    8   11   13   15   19   19   21   23   24   27   30   33   35   37   42 
LCS_GDT     L      48     L      48      3    6   23     3    3    4    4    5    8   11   13   15   19   19   21   24   26   27   31   33   37   37   42 
LCS_GDT     E      49     E      49      5    6   23     4    4    5    5    6    8   10   13   15   19   19   21   24   26   27   31   33   37   38   42 
LCS_GDT     W      50     W      50      5    6   23     4    4    5    5    6    7    9   12   15   19   19   21   23   24   25   29   33   35   37   42 
LCS_GDT     L      51     L      51      5    6   23     4    4    5    6    7    8   10   13   15   19   19   21   23   26   27   28   30   35   37   42 
LCS_GDT     Q      52     Q      52      5    6   23     4    4    5    5    7    8   11   13   15   19   19   22   24   26   28   31   33   37   37   42 
LCS_GDT     W      53     W      53      5    6   23     3    4    5    5    7    8   14   16   18   22   24   27   28   30   31   31   33   37   38   42 
LCS_GDT     V      54     V      54      3    6   23     3    4    5    6    9    9   12   14   15   20   20   27   28   30   31   31   33   37   38   42 
LCS_GDT     L      55     L      55      3    5   23     3    3    3    4    5    7   11   13   18   22   24   27   28   30   31   31   33   37   41   42 
LCS_GDT     I      56     I      56      4   12   23     3    4    6    8   10   11   14   14   15   19   19   21   24   26   28   30   32   37   41   42 
LCS_GDT     P      57     P      57      9   12   23     3    6    9   10   10   13   14   14   15   19   19   21   24   26   28   30   32   36   41   42 
LCS_GDT     R      58     R      58      9   12   23     4    8    9   10   11   13   14   14   16   19   19   21   24   26   28   31   33   37   41   42 
LCS_GDT     M      59     M      59      9   12   23     4    8    9   10   11   13   14   14   16   19   19   21   24   28   28   31   33   38   42   47 
LCS_GDT     H      60     H      60      9   12   23     4    8    9   10   11   13   14   14   16   19   21   23   25   28   30   34   38   41   43   47 
LCS_GDT     D      61     D      61      9   12   23     5    8    9   10   11   13   14   14   16   19   19   23   25   28   28   34   38   41   43   47 
LCS_GDT     L      62     L      62      9   12   23     5    8    9   10   11   13   14   14   16   19   19   23   25   27   28   30   33   37   42   47 
LCS_GDT     L      63     L      63      9   12   23     5    8    9   10   11   13   14   16   16   19   20   23   25   27   28   30   33   41   43   47 
LCS_GDT     D      64     D      64      9   12   23     5    8    9   10   11   13   14   14   16   19   20   25   26   27   34   35   39   41   43   47 
LCS_GDT     N      65     N      65      9   12   23     5    8    9   10   11   13   14   16   16   19   20   21   25   27   28   30   33   37   41   47 
LCS_GDT     K      66     K      66      4   12   23     3    4    4    5   11   13   14   14   16   17   20   21   24   27   28   30   33   35   37   42 
LCS_GDT     Q      67     Q      67      5   12   22     3    4    8   10   11   13   14   14   16   17   19   21   24   26   28   30   33   35   37   42 
LCS_GDT     P      68     P      68      5   12   22     3    4    5    7   11   13   14   14   16   17   19   21   24   26   28   30   33   35   37   42 
LCS_GDT     L      69     L      69      5   12   22     3    4    5    7   10   13   14   14   16   17   19   21   24   26   28   30   33   35   37   42 
LCS_GDT     P      70     P      70      5    7   22     3    4    5    5    8   10   12   14   16   17   19   21   24   26   28   30   33   35   37   42 
LCS_GDT     G      71     G      71      5    7   22     3    3    6    7    8   10   11   14   16   17   19   21   24   26   28   30   33   35   37   42 
LCS_GDT     A      72     A      72      6    7   22     3    6    6    7    8   10   12   14   16   17   19   21   24   26   28   30   33   35   37   42 
LCS_GDT     F      73     F      73      6    7   22     3    6    6    7    7    8   12   14   16   17   19   22   24   26   28   30   33   36   38   42 
LCS_GDT     A      74     A      74      6    7   22     3    6    6    7    7   20   21   21   22   23   23   24   26   27   28   30   33   36   38   42 
LCS_GDT     V      75     V      75      6   10   24     3    6    6   15   21   21   21   21   22   23   23   24   26   27   28   30   33   38   40   42 
LCS_GDT     A      76     A      76      8   10   27     4    8    8    9   10   11   14   16   19   20   22   24   26   27   28   30   33   38   40   49 
LCS_GDT     P      77     P      77      8   10   30     7    8    8    9   10   11   14   16   19   20   22   24   26   27   28   30   34   38   40   49 
LCS_GDT     Y      78     Y      78      8   10   30     7    8    8    9   10   11   14   16   19   20   22   25   27   29   29   30   39   40   46   55 
LCS_GDT     Y      79     Y      79      8   10   30     7    8    8    9   10   11   14   16   19   20   23   25   28   33   35   40   44   48   50   55 
LCS_GDT     E      80     E      80      8   10   30     7    8    8    9   10   11   14   16   19   20   22   25   27   29   29   30   40   41   46   55 
LCS_GDT     M      81     M      81      8   10   30     7    8    8    9   10   11   14   16   19   20   22   25   27   29   29   30   34   38   50   55 
LCS_GDT     A      82     A      82      8   10   30     7    8    8    9   10   13   17   19   22   23   23   25   27   29   29   32   40   43   50   55 
LCS_GDT     L      83     L      83      8   10   30     7    8    8    9   10   14   17   19   22   23   23   25   27   30   35   37   44   48   50   55 
LCS_GDT     A      84     A      84      4   10   30     4    4    6    8   11   14   18   21   22   23   23   25   28   33   35   40   44   48   50   55 
LCS_GDT     T      85     T      85      4    5   30     4    4    4    6    9   11   14   17   20   20   22   24   26   29   30   33   35   44   46   51 
LCS_GDT     D      86     D      86      4    5   30     4    4    4    5    9   11   14   17   20   20   22   25   27   33   35   40   44   48   50   55 
LCS_GDT     H      87     H      87      4   17   30     4    4    5    8   11   14   18   21   22   25   28   29   32   35   36   40   44   48   50   55 
LCS_GDT     P      88     P      88     15   20   30     4    8   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     Q      89     Q      89     15   20   30     4   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     R      90     R      90     15   20   30     7   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     A      91     A      91     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     L      92     L      92     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     I      93     I      93     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     L      94     L      94     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     A      95     A      95     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     E      96     E      96     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     L      97     L      97     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     E      98     E      98     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     K      99     K      99     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     L     100     L     100     15   20   30     9   13   14   19   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     D     101     D     101     15   20   30     9   13   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     A     102     A     102     15   20   30     4   10   14   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     L     103     L     103     12   20   30     4    7   13   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     F     104     F     104     11   20   30     5    8   13   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     A     105     A     105     11   20   30     5    7   13   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     D     106     D     106     11   20   30     5    7   13   20   22   22   22   23   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     D     107     D     107      4   20   30     3    4    5    8   12   14   20   21   25   27   28   30   32   35   36   40   44   48   50   55 
LCS_GDT     A     108     A     108      4   13   28     3    4    5    7   11   17   20   21   23   27   28   30   32   35   36   39   44   48   50   55 
LCS_GDT     S     109     S     109      4    5   25     3    4    5    5    6   13   14   16   18   24   26   28   29   32   34   38   41   48   50   55 
LCS_AVERAGE  LCS_A:  15.51  (   8.85   12.05   25.64 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     19     20     20     22     22     22     23     25     27     28     30     32     35     36     40     44     48     50     55 
GDT PERCENT_CA  11.93  17.43  18.35  18.35  20.18  20.18  20.18  21.10  22.94  24.77  25.69  27.52  29.36  32.11  33.03  36.70  40.37  44.04  45.87  50.46
GDT RMS_LOCAL    0.32   0.51   0.61   0.61   1.50   1.50   1.50   1.92   2.50   2.95   3.06   3.51   3.95   4.40   4.49   5.60   5.98   6.44   6.56   7.25
GDT RMS_ALL_CA  21.19  20.94  20.86  20.86  18.50  18.50  18.50  18.32  18.16  18.09  18.08  17.89  17.75  17.83  17.77  17.67  17.54  17.43  17.42  17.33

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         21.774
LGA    T       2      T       2         15.523
LGA    T       3      T       3         10.909
LGA    H       4      H       4         11.812
LGA    D       5      D       5         10.261
LGA    R       6      R       6          8.271
LGA    V       7      V       7          8.204
LGA    R       8      R       8         10.319
LGA    L       9      L       9         12.529
LGA    Q      10      Q      10         12.075
LGA    L      11      L      11         10.669
LGA    Q      12      Q      12         15.257
LGA    A      13      A      13         18.406
LGA    L      14      L      14         17.326
LGA    E      15      E      15         18.048
LGA    A      16      A      16         23.936
LGA    L      17      L      17         25.908
LGA    L      18      L      18         24.050
LGA    R      19      R      19         27.312
LGA    E      20      E      20         32.761
LGA    H      21      H      21         32.830
LGA    Q      22      Q      22         31.757
LGA    H      23      H      23         26.325
LGA    W      24      W      24         26.293
LGA    R      25      R      25         25.026
LGA    N      26      N      26         26.141
LGA    D      27      D      27         23.213
LGA    E      28      E      28         20.066
LGA    P      29      P      29         14.048
LGA    Q      30      Q      30         10.117
LGA    P      31      P      31          4.497
LGA    H      32      H      32          3.382
LGA    Q      33      Q      33          3.656
LGA    F      34      F      34          3.726
LGA    N      35      N      35          6.059
LGA    S      36      S      36          8.561
LGA    T      37      T      37          8.209
LGA    Q      38      Q      38          8.698
LGA    P      39      P      39          8.645
LGA    F      40      F      40         10.780
LGA    F      41      F      41          6.785
LGA    M      42      M      42          3.825
LGA    D      43      D      43          5.078
LGA    T      44      T      44          8.096
LGA    M      45      M      45          6.775
LGA    E      46      E      46         13.006
LGA    P      47      P      47         14.235
LGA    L      48      L      48         14.191
LGA    E      49      E      49         16.796
LGA    W      50      W      50         15.311
LGA    L      51      L      51         17.291
LGA    Q      52      Q      52         16.588
LGA    W      53      W      53         14.184
LGA    V      54      V      54         13.483
LGA    L      55      L      55         15.247
LGA    I      56      I      56         14.481
LGA    P      57      P      57         19.464
LGA    R      58      R      58         24.074
LGA    M      59      M      59         20.185
LGA    H      60      H      60         19.860
LGA    D      61      D      61         27.089
LGA    L      62      L      62         28.449
LGA    L      63      L      63         24.572
LGA    D      64      D      64         26.974
LGA    N      65      N      65         34.001
LGA    K      66      K      66         34.411
LGA    Q      67      Q      67         39.232
LGA    P      68      P      68         38.300
LGA    L      69      L      69         33.879
LGA    P      70      P      70         35.155
LGA    G      71      G      71         34.785
LGA    A      72      A      72         33.475
LGA    F      73      F      73         27.588
LGA    A      74      A      74         23.908
LGA    V      75      V      75         17.137
LGA    A      76      A      76         16.408
LGA    P      77      P      77         18.566
LGA    Y      78      Y      78         17.812
LGA    Y      79      Y      79         14.236
LGA    E      80      E      80         16.473
LGA    M      81      M      81         18.821
LGA    A      82      A      82         16.657
LGA    L      83      L      83         14.466
LGA    A      84      A      84         14.019
LGA    T      85      T      85         17.758
LGA    D      86      D      86         13.249
LGA    H      87      H      87          9.066
LGA    P      88      P      88          2.407
LGA    Q      89      Q      89          1.703
LGA    R      90      R      90          2.011
LGA    A      91      A      91          2.256
LGA    L      92      L      92          1.650
LGA    I      93      I      93          1.127
LGA    L      94      L      94          0.590
LGA    A      95      A      95          2.028
LGA    E      96      E      96          2.635
LGA    L      97      L      97          1.933
LGA    E      98      E      98          0.859
LGA    K      99      K      99          2.774
LGA    L     100      L     100          3.395
LGA    D     101      D     101          1.851
LGA    A     102      A     102          1.632
LGA    L     103      L     103          1.357
LGA    F     104      F     104          0.892
LGA    A     105      A     105          0.614
LGA    D     106      D     106          1.826
LGA    D     107      D     107          4.875
LGA    A     108      A     108          5.631
LGA    S     109      S     109          9.512

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     23    1.92    23.394    20.279     1.138

LGA_LOCAL      RMSD =  1.922  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.006  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 16.511  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.735659 * X  +   0.108458 * Y  +   0.668613 * Z  + -12.151244
  Y_new =   0.401906 * X  +   0.864453 * Y  +   0.301981 * Z  +  11.733092
  Z_new =  -0.545232 * X  +   0.490875 * Y  +  -0.679532 * Z  +  -3.640676 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.516010   -0.625583  [ DEG:   144.1567    -35.8433 ]
  Theta =   0.576666    2.564927  [ DEG:    33.0405    146.9595 ]
  Phi   =   2.641578   -0.500015  [ DEG:   151.3513    -28.6487 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS599_3                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS599_3.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   23   1.92  20.279    16.51
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS599_3
PFRMAT TS                                                                       
TARGET T0352                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1     -14.120   6.500  -9.818  1.00  0.00              
ATOM      2  CA  THR     2     -11.387   5.096  -7.706  1.00  0.00              
ATOM      3  CA  THR     3     -10.093   2.185  -6.061  1.00  0.00              
ATOM      4  CA  HIS     4     -10.907   2.565  -1.955  1.00  0.00              
ATOM      5  CA  ASP     5      -7.266   1.545  -1.334  1.00  0.00              
ATOM      6  CA  ARG     6      -6.103   4.127  -3.858  1.00  0.00              
ATOM      7  CA  VAL     7      -8.241   6.860  -2.230  1.00  0.00              
ATOM      8  CA  ARG     8      -6.964   6.077   1.220  1.00  0.00              
ATOM      9  CA  LEU     9      -3.424   6.183  -0.034  1.00  0.00              
ATOM     10  CA  GLN    10      -3.985   9.538  -1.753  1.00  0.00              
ATOM     11  CA  LEU    11      -5.551  11.106   1.338  1.00  0.00              
ATOM     12  CA  GLN    12      -2.640   9.917   3.483  1.00  0.00              
ATOM     13  CA  ALA    13      -0.120  11.357   0.976  1.00  0.00              
ATOM     14  CA  LEU    14      -1.897  14.672   0.969  1.00  0.00              
ATOM     15  CA  GLU    15      -1.961  14.748   4.743  1.00  0.00              
ATOM     16  CA  ALA    16       1.743  14.084   4.991  1.00  0.00              
ATOM     17  CA  LEU    17       2.517  16.874   2.491  1.00  0.00              
ATOM     18  CA  LEU    18       0.293  19.360   4.278  1.00  0.00              
ATOM     19  CA  ARG    19       1.920  18.558   7.628  1.00  0.00              
ATOM     20  CA  GLU    20       5.444  18.791   6.237  1.00  0.00              
ATOM     21  CA  HIS    21       4.617  22.098   4.666  1.00  0.00              
ATOM     22  CA  GLN    22       3.005  23.595   7.767  1.00  0.00              
ATOM     23  CA  HIS    23      -0.076  24.330   5.818  1.00  0.00              
ATOM     24  CA  TRP    24      -2.505  21.601   6.666  1.00  0.00              
ATOM     25  CA  ARG    25      -5.599  23.749   7.081  1.00  0.00              
ATOM     26  CA  ASN    26      -4.697  25.781   3.959  1.00  0.00              
ATOM     27  CA  ASP    27      -4.564  22.971   1.398  1.00  0.00              
ATOM     28  CA  GLU    28      -5.948  24.212  -1.879  1.00  0.00              
ATOM     29  CA  PRO    29      -4.935  22.128  -4.784  1.00  0.00              
ATOM     30  CA  GLN    30      -2.630  23.847  -7.181  1.00  0.00              
ATOM     31  CA  PRO    31      -3.935  25.632 -10.243  1.00  0.00              
ATOM     32  CA  HIS    32      -2.058  23.157 -12.452  1.00  0.00              
ATOM     33  CA  GLN    33      -3.947  20.211 -10.891  1.00  0.00              
ATOM     34  CA  PHE    34      -7.296  21.920 -11.451  1.00  0.00              
ATOM     35  CA  ASN    35      -6.551  22.718 -15.114  1.00  0.00              
ATOM     36  CA  SER    36      -5.472  19.139 -15.904  1.00  0.00              
ATOM     37  CA  THR    37      -8.409  17.278 -14.470  1.00  0.00              
ATOM     38  CA  GLN    38      -7.033  15.829 -11.215  1.00  0.00              
ATOM     39  CA  PRO    39      -9.143  17.074  -8.376  1.00  0.00              
ATOM     40  CA  PHE    40      -7.292  18.693  -5.437  1.00  0.00              
ATOM     41  CA  PHE    41      -9.351  20.201  -2.613  1.00  0.00              
ATOM     42  CA  MET    42      -8.284  19.747   0.961  1.00  0.00              
ATOM     43  CA  ASP    43      -9.293  22.501   3.310  1.00  0.00              
ATOM     44  CA  THR    44     -10.190  20.370   6.379  1.00  0.00              
ATOM     45  CA  MET    45     -11.365  17.295   4.430  1.00  0.00              
ATOM     46  CA  GLU    46     -11.944  14.297   6.734  1.00  0.00              
ATOM     47  CA  PRO    47     -10.817  10.870   5.518  1.00  0.00              
ATOM     48  CA  LEU    48     -14.377   9.481   5.238  1.00  0.00              
ATOM     49  CA  GLU    49     -15.589  12.524   3.253  1.00  0.00              
ATOM     50  CA  TRP    50     -12.632  12.087   0.945  1.00  0.00              
ATOM     51  CA  LEU    51     -13.586   8.473   0.350  1.00  0.00              
ATOM     52  CA  GLN    52     -17.199   9.310  -0.450  1.00  0.00              
ATOM     53  CA  TRP    53     -15.971  12.002  -2.830  1.00  0.00              
ATOM     54  CA  VAL    54     -13.541   9.664  -4.641  1.00  0.00              
ATOM     55  CA  LEU    55     -16.389   7.260  -5.539  1.00  0.00              
ATOM     56  CA  ILE    56     -19.024   9.785  -6.462  1.00  0.00              
ATOM     57  CA  PRO    57     -21.022   9.822  -9.623  1.00  0.00              
ATOM     58  CA  ARG    58     -21.767  13.571  -9.646  1.00  0.00              
ATOM     59  CA  MET    59     -18.090  14.390  -9.026  1.00  0.00              
ATOM     60  CA  HIS    60     -16.863  12.212 -11.802  1.00  0.00              
ATOM     61  CA  ASP    61     -19.323  13.700 -14.260  1.00  0.00              
ATOM     62  CA  LEU    62     -18.372  17.306 -13.319  1.00  0.00              
ATOM     63  CA  LEU    63     -14.685  16.685 -13.605  1.00  0.00              
ATOM     64  CA  ASP    64     -15.053  14.837 -16.910  1.00  0.00              
ATOM     65  CA  ASN    65     -17.229  17.602 -18.427  1.00  0.00              
ATOM     66  CA  LYS    66     -14.763  20.390 -17.840  1.00  0.00              
ATOM     67  CA  GLN    67     -17.013  22.660 -15.677  1.00  0.00              
ATOM     68  CA  PRO    68     -14.565  25.225 -14.475  1.00  0.00              
ATOM     69  CA  LEU    69     -13.850  25.147 -10.800  1.00  0.00              
ATOM     70  CA  PRO    70     -13.924  28.842  -9.796  1.00  0.00              
ATOM     71  CA  GLY    71     -10.485  30.058  -8.880  1.00  0.00              
ATOM     72  CA  ALA    72     -10.513  29.833  -5.130  1.00  0.00              
ATOM     73  CA  PHE    73     -12.750  26.710  -4.810  1.00  0.00              
ATOM     74  CA  ALA    74     -14.081  25.781  -1.409  1.00  0.00              
ATOM     75  CA  VAL    75     -14.778  22.108  -1.819  1.00  0.00              
ATOM     76  CA  ALA    76     -16.945  21.365   1.266  1.00  0.00              
ATOM     77  CA  PRO    77     -20.004  23.322   0.236  1.00  0.00              
ATOM     78  CA  TYR    78     -19.982  21.942  -3.342  1.00  0.00              
ATOM     79  CA  TYR    79     -19.650  18.375  -2.155  1.00  0.00              
ATOM     80  CA  GLU    80     -22.381  18.631   0.400  1.00  0.00              
ATOM     81  CA  MET    81     -24.854  20.157  -2.056  1.00  0.00              
ATOM     82  CA  ALA    82     -24.284  17.579  -4.735  1.00  0.00              
ATOM     83  CA  LEU    83     -24.568  14.692  -2.376  1.00  0.00              
ATOM     84  CA  ALA    84     -27.843  15.887  -0.817  1.00  0.00              
ATOM     85  CA  THR    85     -29.616  16.482  -4.142  1.00  0.00              
ATOM     86  CA  ASP    86     -28.685  13.044  -5.513  1.00  0.00              
ATOM     87  CA  HIS    87     -29.561  10.859  -2.530  1.00  0.00              
ATOM     88  CA  PRO    88     -30.165   7.591  -4.428  1.00  0.00              
ATOM     89  CA  GLN    89     -26.874   7.916  -6.321  1.00  0.00              
ATOM     90  CA  ARG    90     -24.945   8.648  -3.082  1.00  0.00              
ATOM     91  CA  ALA    91     -26.378   5.593  -1.375  1.00  0.00              
ATOM     92  CA  LEU    92     -25.432   3.384  -4.353  1.00  0.00              
ATOM     93  CA  ILE    93     -21.918   4.754  -4.241  1.00  0.00              
ATOM     94  CA  LEU    94     -21.642   4.071  -0.479  1.00  0.00              
ATOM     95  CA  ALA    95     -22.902   0.508  -1.025  1.00  0.00              
ATOM     96  CA  GLU    96     -20.352  -0.033  -3.829  1.00  0.00              
ATOM     97  CA  LEU    97     -17.531   1.319  -1.589  1.00  0.00              
ATOM     98  CA  GLU    98     -18.595  -0.973   1.267  1.00  0.00              
ATOM     99  CA  LYS    99     -18.596  -3.970  -1.138  1.00  0.00              
ATOM    100  CA  LEU   100     -15.140  -3.056  -2.387  1.00  0.00              
ATOM    101  CA  ASP   101     -13.817  -2.761   1.169  1.00  0.00              
ATOM    102  CA  ALA   102     -15.019  -6.297   1.864  1.00  0.00              
ATOM    103  CA  LEU   103     -13.304  -7.523  -1.341  1.00  0.00              
ATOM    104  CA  PHE   104     -10.061  -5.781  -0.359  1.00  0.00              
ATOM    105  CA  ALA   105     -10.144  -7.323   3.122  1.00  0.00              
ATOM    106  CA  ASP   106     -10.796 -10.810   1.889  1.00  0.00              
ATOM    107  CA  ASP   107      -8.073 -10.843  -0.768  1.00  0.00              
ATOM    108  CA  ALA   108     -10.438 -11.138  -3.740  1.00  0.00              
ATOM    109  CA  SER   109      -9.240  -8.686  -6.417  1.00  0.00              
ATOM    110  CA  LEU   110     -12.362  -6.705  -7.300  1.00  0.00              
ATOM    111  CA  GLU   111     -10.706  -3.847  -9.240  1.00  0.00              
ATOM    112  CA  HIS   112     -12.024  -3.354 -12.725  1.00  0.00              
ATOM    113  CA  HIS   113      -8.723  -2.602 -14.494  1.00  0.00              
ATOM    114  CA  HIS   114      -9.218  -6.269 -13.711  1.00  0.00              
ATOM    115  CA  HIS   115      -6.120  -6.460 -10.879  1.00  0.00              
ATOM    116  CA  HIS   116      -5.378  -7.166  -6.802  1.00  0.00              
ATOM    117  CA  HIS   117      -1.550  -6.607  -6.377  1.00  0.00              
TER                                                                             
END
