
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS599_4
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS599_4.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35         1 - 35          4.57    21.93
  LCS_AVERAGE:     28.08

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22         2 - 23          1.93    19.94
  LCS_AVERAGE:     12.23

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.80    20.64
  LCS_AVERAGE:      8.74

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    5   35     0    3    3    4    4    5    6   10   21   27   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     T       2     T       2      3   22   35     3    5    6    8   15   18   21   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     T       3     T       3     20   22   35    10   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     H       4     H       4     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     D       5     D       5     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     R       6     R       6     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     V       7     V       7     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     R       8     R       8     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     L       9     L       9     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     Q      10     Q      10     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     L      11     L      11     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     Q      12     Q      12     20   22   35    12   17   19   21   21   22   23   26   29   29   32   33   36   37   40   40   40   41   43   45 
LCS_GDT     A      13     A      13     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     L      14     L      14     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     E      15     E      15     20   22   35    12   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     A      16     A      16     20   22   35     9   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     L      17     L      17     20   22   35     9   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     L      18     L      18     20   22   35     9   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     R      19     R      19     20   22   35     9   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     E      20     E      20     20   22   35     8   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     H      21     H      21     20   22   35     9   17   19   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     Q      22     Q      22     20   22   35     6   12   17   21   21   22   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     H      23     H      23      3   22   35     3    3    4    7   16   21   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     W      24     W      24      3    6   35     3    3    5    6   11   17   21   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     R      25     R      25      4    5   35     3    4    6    8   12   17   23   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     N      26     N      26      4    6   35     3    4    5    5    7    9   17   26   29   29   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     D      27     D      27      4    8   35     3    4    4    7    7    8   10   18   29   29   31   33   36   37   40   40   40   41   43   45 
LCS_GDT     E      28     E      28      4    8   35     3    4    5    7    8   11   17   26   29   29   32   33   36   37   40   40   40   41   43   45 
LCS_GDT     P      29     P      29      4    8   35     3    4    5    5    8   11   17   26   29   29   32   33   36   37   40   40   40   41   43   45 
LCS_GDT     Q      30     Q      30      4    8   35     3    4    5    7    8   11   17   26   29   29   32   33   36   37   40   40   40   42   44   45 
LCS_GDT     P      31     P      31      4    8   35     3    4    5    7    8   10   15   22   27   29   32   34   36   37   40   40   40   42   44   45 
LCS_GDT     H      32     H      32      4    8   35     3    4    5    7    8    8   12   19   23   28   32   34   36   37   40   40   40   41   43   45 
LCS_GDT     Q      33     Q      33      4    8   35     3    4    4    7    7    8   12   19   23   27   32   34   36   37   40   40   40   42   44   45 
LCS_GDT     F      34     F      34      4    8   35     3    4    5    7    8    9   11   15   22   25   30   34   36   37   40   40   40   42   44   45 
LCS_GDT     N      35     N      35      4    5   35     3    4    5    6    8   12   15   19   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     S      36     S      36      4    5   14     3    4    4    6    9   12   16   19   20   23   24   27   31   33   35   38   40   42   44   45 
LCS_GDT     T      37     T      37      4    5   14     3    4    4    6    9   12   16   19   20   25   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     Q      38     Q      38      4    5   29     3    4    4    6    9   12   16   19   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     P      39     P      39      3    5   29     3    4    6   18   20   20   22   24   26   27   28   30   32   34   35   38   40   42   44   45 
LCS_GDT     F      40     F      40      3    8   29     3    4    4    6    8   18   22   24   26   27   28   30   32   34   35   37   38   42   44   45 
LCS_GDT     F      41     F      41      5    8   29     3   10   17   21   21   22   22   24   26   27   28   30   32   34   35   37   39   42   44   45 
LCS_GDT     M      42     M      42      5    8   29     3    4    7   15   21   21   22   24   26   27   28   30   32   34   35   37   40   42   44   45 
LCS_GDT     D      43     D      43      5    8   29     4    5    7    8   10   12   21   23   24   27   28   30   32   34   35   37   38   42   44   45 
LCS_GDT     T      44     T      44      5    8   29     4    5    7    8   10   12   13   14   17   24   26   28   30   33   35   38   40   42   44   45 
LCS_GDT     M      45     M      45      5    8   29     4    5    7    8   10   12   13   15   17   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     E      46     E      46      5    8   29     4    5    7    8   10   12   13   15   17   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     P      47     P      47      5    8   29     3    5    6    8    9   12   13   15   18   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     L      48     L      48      3    8   29     3    3    4    7   10   12   13   16   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     E      49     E      49      5    6   29     3    4    5    6    7    9   11   16   20   22   24   28   31   32   35   38   40   42   44   45 
LCS_GDT     W      50     W      50      5    6   29     3    4    5    6    7    9   12   16   20   22   25   28   31   33   35   38   40   42   44   45 
LCS_GDT     L      51     L      51      5    6   29     3    4    5    6    8   10   13   16   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     Q      52     Q      52      5    6   29     3    4    5    8   10   12   13   16   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     W      53     W      53      5    6   29     3    4    7    8   10   12   21   23   24   26   28   29   31   33   35   38   40   42   44   45 
LCS_GDT     V      54     V      54      3    6   29     3    3    4    5   10   12   13   20   25   28   30   34   36   37   40   40   40   42   44   45 
LCS_GDT     L      55     L      55      3    5   29     3    3    4    5    9   20   23   25   25   28   30   34   36   37   40   40   40   42   44   45 
LCS_GDT     I      56     I      56      4   12   29     3    4    6    8   10   11   12   16   20   24   26   29   31   36   40   40   40   42   44   45 
LCS_GDT     P      57     P      57      9   12   29     3    8    9    9   10   11   12   16   20   22   24   29   31   33   35   38   40   42   44   45 
LCS_GDT     R      58     R      58      9   12   29     4    8    9    9   10   11   12   14   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     M      59     M      59      9   12   29     4    8    9    9   10   11   13   16   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     H      60     H      60      9   12   29     6    8    9    9   10   11   12   15   17   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     D      61     D      61      9   12   29     6    8    9    9   10   11   12   15   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     L      62     L      62      9   12   29     6    8    9    9   10   11   12   16   20   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     L      63     L      63      9   12   29     6    8    9    9   10   11   12   14   17   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     D      64     D      64      9   12   29     6    8    9    9   10   11   12   15   17   24   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     N      65     N      65      9   12   29     6    8    9    9   10   11   12   16   20   23   26   29   31   33   35   38   40   42   44   45 
LCS_GDT     K      66     K      66      4   12   29     3    4    4    5    8   11   12   15   20   22   25   29   31   33   35   38   40   42   44   45 
LCS_GDT     Q      67     Q      67      4   12   23     3    4    4    8   10   11   12   14   14   18   21   22   24   28   33   36   37   39   41   45 
LCS_GDT     P      68     P      68      4    7   22     3    4    5    5    8   11   12   14   14   16   21   22   23   25   26   32   35   38   41   44 
LCS_GDT     L      69     L      69      4    7   22     3    4    5    5    8   11   12   14   14   16   17   20   20   22   24   26   30   33   38   44 
LCS_GDT     P      70     P      70      4    7   21     3    4    5    5    7    9   11   12   14   16   17   20   20   22   28   33   35   36   38   39 
LCS_GDT     G      71     G      71      3    7   21     3    3    5    5    7    9   10   12   14   16   17   20   20   22   28   33   35   36   38   39 
LCS_GDT     A      72     A      72      6    7   21     3    5    6    7    7    9   10   12   14   16   17   20   20   22   28   33   35   36   38   39 
LCS_GDT     F      73     F      73      6    7   21     3    5    6    7    7    8    9   12   14   16   17   20   22   24   29   33   35   37   39   41 
LCS_GDT     A      74     A      74      6    7   22     3    5    6    7    7    9   11   12   16   18   28   28   33   34   35   37   38   39   40   43 
LCS_GDT     V      75     V      75      6   10   24     3    5    6    7    8   11   15   20   25   28   30   34   35   37   40   40   40   41   43   45 
LCS_GDT     A      76     A      76      8   10   27     3    8   10   16   20   22   23   25   25   28   30   34   35   37   40   40   40   41   43   45 
LCS_GDT     P      77     P      77      8   10   31     7    8    8    8    8   10   11   17   21   25   30   34   35   37   40   40   40   41   43   45 
LCS_GDT     Y      78     Y      78      8   10   31     7    8    8    8    8   13   16   19   22   25   26   30   32   34   35   36   37   40   43   45 
LCS_GDT     Y      79     Y      79      8   10   31     7    8    8    8    8   13   16   19   22   25   28   30   32   34   35   36   38   40   43   45 
LCS_GDT     E      80     E      80      8   10   31     7    8    8    8    9   13   16   19   22   25   26   30   32   34   35   36   39   40   43   45 
LCS_GDT     M      81     M      81      8   10   31     7    8    8    8    9   13   16   19   22   25   26   30   32   34   35   36   37   37   39   44 
LCS_GDT     A      82     A      82      8   10   31     7    8    8    8   10   15   17   21   23   26   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     L      83     L      83      8   10   31     7    8    8    8   11   15   18   23   26   27   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     A      84     A      84      4   10   31     4    4    5   10   13   17   22   24   26   27   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     T      85     T      85      4    7   31     4    4    4    7    9   11   15   18   20   25   26   29   32   34   34   36   37   37   39   41 
LCS_GDT     D      86     D      86      4    7   31     4    4    4    5    9   11   14   18   20   25   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     H      87     H      87      4   20   31     4    4    6   10   14   18   22   24   26   27   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     P      88     P      88     15   20   31     4    8   11   19   21   21   22   24   26   27   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     Q      89     Q      89     15   20   31     4   13   15   19   21   21   22   24   26   27   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     R      90     R      90     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   36   37   37   39   41 
LCS_GDT     A      91     A      91     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   36   37   37   39   44 
LCS_GDT     L      92     L      92     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   36   37   37   39   44 
LCS_GDT     I      93     I      93     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   36   37   40   42   45 
LCS_GDT     L      94     L      94     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   36   37   40   42   45 
LCS_GDT     A      95     A      95     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   37   39   40   42   45 
LCS_GDT     E      96     E      96     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   37   39   42   44   45 
LCS_GDT     L      97     L      97     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   38   40   42   44   45 
LCS_GDT     E      98     E      98     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   38   40   42   44   45 
LCS_GDT     K      99     K      99     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   38   40   42   44   45 
LCS_GDT     L     100     L     100     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   38   40   42   44   45 
LCS_GDT     D     101     D     101     15   20   31    10   13   15   19   21   21   22   24   26   27   28   30   32   34   35   38   40   42   44   45 
LCS_GDT     A     102     A     102     15   20   31     4   10   14   19   21   21   22   24   26   27   28   30   32   34   35   38   40   42   44   45 
LCS_GDT     L     103     L     103     13   20   31     4    7   12   19   21   21   22   24   26   27   28   30   32   34   35   37   40   42   44   45 
LCS_GDT     F     104     F     104     11   20   31     4    7   15   19   21   21   22   24   26   27   28   30   32   34   35   36   38   39   42   43 
LCS_GDT     A     105     A     105     11   20   31     4    8   15   19   21   21   22   24   26   27   28   30   32   34   35   36   38   39   42   43 
LCS_GDT     D     106     D     106     11   20   31     4    7   14   19   21   21   22   24   26   27   28   30   32   34   35   36   38   39   42   43 
LCS_GDT     D     107     D     107      4   20   31     3    4    6    8   12   13   19   20   21   23   25   25   30   33   35   36   38   39   42   43 
LCS_GDT     A     108     A     108      4   13   30     3    4    6    7   10   16   19   20   21   23   23   23   28   30   33   33   38   39   42   43 
LCS_GDT     S     109     S     109      4    5   27     3    4    6    7    7   10   12   13   16   20   22   22   23   24   26   27   29   33   36   36 
LCS_AVERAGE  LCS_A:  16.35  (   8.74   12.23   28.08 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     17     19     21     21     22     23     26     29     29     32     34     36     37     40     40     40     42     44     45 
GDT PERCENT_CA  11.01  15.60  17.43  19.27  19.27  20.18  21.10  23.85  26.61  26.61  29.36  31.19  33.03  33.94  36.70  36.70  36.70  38.53  40.37  41.28
GDT RMS_LOCAL    0.34   0.59   0.67   1.03   1.03   1.53   2.02   3.33   3.46   3.46   3.80   4.06   4.22   4.38   4.78   4.78   4.78   6.02   6.24   6.37
GDT RMS_ALL_CA  20.76  20.71  20.74  20.14  20.14  20.06  20.15  23.09  23.42  23.42  22.23  20.82  21.72  21.52  21.01  21.01  21.01  21.96  21.98  22.05

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.184
LGA    T       2      T       2          2.820
LGA    T       3      T       3          3.463
LGA    H       4      H       4          2.509
LGA    D       5      D       5          3.926
LGA    R       6      R       6          3.232
LGA    V       7      V       7          3.030
LGA    R       8      R       8          3.288
LGA    L       9      L       9          3.789
LGA    Q      10      Q      10          2.918
LGA    L      11      L      11          3.718
LGA    Q      12      Q      12          4.062
LGA    A      13      A      13          2.851
LGA    L      14      L      14          3.243
LGA    E      15      E      15          4.093
LGA    A      16      A      16          3.526
LGA    L      17      L      17          3.100
LGA    L      18      L      18          3.807
LGA    R      19      R      19          3.339
LGA    E      20      E      20          2.427
LGA    H      21      H      21          3.658
LGA    Q      22      Q      22          3.833
LGA    H      23      H      23          3.533
LGA    W      24      W      24          3.494
LGA    R      25      R      25          3.961
LGA    N      26      N      26          3.459
LGA    D      27      D      27          4.467
LGA    E      28      E      28          3.527
LGA    P      29      P      29          3.625
LGA    Q      30      Q      30          3.213
LGA    P      31      P      31          6.715
LGA    H      32      H      32          8.141
LGA    Q      33      Q      33          8.304
LGA    F      34      F      34          8.796
LGA    N      35      N      35         15.383
LGA    S      36      S      36         17.120
LGA    T      37      T      37         18.579
LGA    Q      38      Q      38         18.360
LGA    P      39      P      39         18.253
LGA    F      40      F      40         20.557
LGA    F      41      F      41         17.574
LGA    M      42      M      42         20.327
LGA    D      43      D      43         17.147
LGA    T      44      T      44         19.571
LGA    M      45      M      45         20.095
LGA    E      46      E      46         22.413
LGA    P      47      P      47         23.652
LGA    L      48      L      48         21.148
LGA    E      49      E      49         21.150
LGA    W      50      W      50         19.374
LGA    L      51      L      51         19.561
LGA    Q      52      Q      52         19.155
LGA    W      53      W      53         16.568
LGA    V      54      V      54          9.737
LGA    L      55      L      55         11.327
LGA    I      56      I      56         14.370
LGA    P      57      P      57         12.930
LGA    R      58      R      58         16.122
LGA    M      59      M      59         15.608
LGA    H      60      H      60         13.282
LGA    D      61      D      61         17.182
LGA    L      62      L      62         21.904
LGA    L      63      L      63         20.440
LGA    D      64      D      64         20.999
LGA    N      65      N      65         26.229
LGA    K      66      K      66         26.519
LGA    Q      67      Q      67         30.767
LGA    P      68      P      68         29.408
LGA    L      69      L      69         25.263
LGA    P      70      P      70         25.312
LGA    G      71      G      71         24.768
LGA    A      72      A      72         22.044
LGA    F      73      F      73         16.018
LGA    A      74      A      74         12.836
LGA    V      75      V      75         11.315
LGA    A      76      A      76         14.177
LGA    P      77      P      77         12.705
LGA    Y      78      Y      78         16.730
LGA    Y      79      Y      79         19.755
LGA    E      80      E      80         21.458
LGA    M      81      M      81         22.219
LGA    A      82      A      82         26.552
LGA    L      83      L      83         29.740
LGA    A      84      A      84         32.749
LGA    T      85      T      85         34.915
LGA    D      86      D      86         36.266
LGA    H      87      H      87         35.812
LGA    P      88      P      88         37.792
LGA    Q      89      Q      89         33.604
LGA    R      90      R      90         30.454
LGA    A      91      A      91         34.830
LGA    L      92      L      92         34.366
LGA    I      93      I      93         29.374
LGA    L      94      L      94         31.688
LGA    A      95      A      95         36.097
LGA    E      96      E      96         32.843
LGA    L      97      L      97         30.586
LGA    E      98      E      98         36.164
LGA    K      99      K      99         38.079
LGA    L     100      L     100         34.477
LGA    D     101      D     101         36.475
LGA    A     102      A     102         42.705
LGA    L     103      L     103         43.688
LGA    F     104      F     104         41.270
LGA    A     105      A     105         45.734
LGA    D     106      D     106         49.978
LGA    D     107      D     107         52.072
LGA    A     108      A     108         54.038
LGA    S     109      S     109         52.437

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     26    3.33    23.853    20.963     0.757

LGA_LOCAL      RMSD =  3.333  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.467  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 16.603  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.661200 * X  +  -0.561460 * Y  +   0.497572 * Z  +  -1.929505
  Y_new =   0.142642 * X  +  -0.557056 * Y  +  -0.818133 * Z  +  15.411790
  Z_new =   0.736524 * X  +   0.611924 * Y  +  -0.288238 * Z  +  -7.709960 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.011005   -1.130588  [ DEG:   115.2221    -64.7779 ]
  Theta =  -0.827918   -2.313675  [ DEG:   -47.4362   -132.5638 ]
  Phi   =   0.212476   -2.929117  [ DEG:    12.1740   -167.8260 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS599_4                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS599_4.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   26   3.33  20.963    16.60
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS599_4
PFRMAT TS                                                                       
TARGET T0352                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      -0.335  -2.737 -11.868  1.00  0.00              
ATOM      2  CA  THR     2       0.083  -3.884  -8.199  1.00  0.00              
ATOM      3  CA  THR     3      -0.309  -3.030  -4.732  1.00  0.00              
ATOM      4  CA  HIS     4      -1.526  -3.015  -8.769  1.00  0.00              
ATOM      5  CA  ASP     5      -5.035  -4.403  -8.130  1.00  0.00              
ATOM      6  CA  ARG     6      -5.420  -1.957  -5.274  1.00  0.00              
ATOM      7  CA  VAL     7      -4.312   0.954  -7.426  1.00  0.00              
ATOM      8  CA  ARG     8      -6.722  -0.042 -10.188  1.00  0.00              
ATOM      9  CA  LEU     9      -9.615  -0.245  -7.696  1.00  0.00              
ATOM     10  CA  GLN    10      -8.761   3.180  -6.297  1.00  0.00              
ATOM     11  CA  LEU    11      -8.706   4.636  -9.805  1.00  0.00              
ATOM     12  CA  GLN    12     -12.063   3.047 -10.603  1.00  0.00              
ATOM     13  CA  ALA    13     -13.584   4.544  -7.461  1.00  0.00              
ATOM     14  CA  LEU    14     -12.258   7.948  -8.366  1.00  0.00              
ATOM     15  CA  GLU    15     -13.644   7.664 -11.941  1.00  0.00              
ATOM     16  CA  ALA    16     -17.137   6.773 -10.771  1.00  0.00              
ATOM     17  CA  LEU    17     -17.235   9.648  -8.306  1.00  0.00              
ATOM     18  CA  LEU    18     -15.932  12.171 -10.779  1.00  0.00              
ATOM     19  CA  ARG    19     -18.450  11.126 -13.407  1.00  0.00              
ATOM     20  CA  GLU    20     -21.467  11.301 -11.154  1.00  0.00              
ATOM     21  CA  HIS    21     -20.254  14.811 -10.119  1.00  0.00              
ATOM     22  CA  GLN    22     -19.647  16.151 -13.663  1.00  0.00              
ATOM     23  CA  HIS    23     -15.934  16.885 -13.107  1.00  0.00              
ATOM     24  CA  TRP    24     -14.426  15.002 -16.058  1.00  0.00              
ATOM     25  CA  ARG    25     -16.235  16.868 -18.848  1.00  0.00              
ATOM     26  CA  ASN    26     -14.942  20.156 -17.406  1.00  0.00              
ATOM     27  CA  ASP    27     -11.284  19.537 -16.514  1.00  0.00              
ATOM     28  CA  GLU    28      -8.840  21.409 -18.662  1.00  0.00              
ATOM     29  CA  PRO    29      -6.036  22.945 -16.713  1.00  0.00              
ATOM     30  CA  GLN    30      -5.669  26.524 -17.692  1.00  0.00              
ATOM     31  CA  PRO    31      -2.962  27.373 -20.268  1.00  0.00              
ATOM     32  CA  HIS    32      -1.195  29.616 -17.787  1.00  0.00              
ATOM     33  CA  GLN    33      -0.941  26.781 -15.218  1.00  0.00              
ATOM     34  CA  PHE    34       0.462  24.385 -17.812  1.00  0.00              
ATOM     35  CA  ASN    35       3.115  26.888 -19.007  1.00  0.00              
ATOM     36  CA  SER    36       4.373  27.743 -15.517  1.00  0.00              
ATOM     37  CA  THR    37       4.938  24.278 -14.132  1.00  0.00              
ATOM     38  CA  GLN    38       2.136  24.039 -11.608  1.00  0.00              
ATOM     39  CA  PRO    39      -0.245  21.158 -12.015  1.00  0.00              
ATOM     40  CA  PHE    40      -2.951  20.874 -14.624  1.00  0.00              
ATOM     41  CA  PHE    41      -5.980  18.664 -14.327  1.00  0.00              
ATOM     42  CA  MET    42      -7.067  16.762 -17.386  1.00  0.00              
ATOM     43  CA  ASP    43     -10.608  15.570 -17.653  1.00  0.00              
ATOM     44  CA  THR    44     -10.107  11.849 -17.724  1.00  0.00              
ATOM     45  CA  MET    45      -7.385  11.838 -15.075  1.00  0.00              
ATOM     46  CA  GLU    46      -5.469   8.547 -14.862  1.00  0.00              
ATOM     47  CA  PRO    47      -4.879   6.924 -11.516  1.00  0.00              
ATOM     48  CA  LEU    48      -1.092   7.532 -11.604  1.00  0.00              
ATOM     49  CA  GLU    49      -1.654  11.218 -12.334  1.00  0.00              
ATOM     50  CA  TRP    50      -4.128  11.498  -9.466  1.00  0.00              
ATOM     51  CA  LEU    51      -1.730   9.906  -6.996  1.00  0.00              
ATOM     52  CA  GLN    52       1.050  12.268  -8.082  1.00  0.00              
ATOM     53  CA  TRP    53      -1.382  15.161  -7.659  1.00  0.00              
ATOM     54  CA  VAL    54      -2.471  14.180  -4.197  1.00  0.00              
ATOM     55  CA  LEU    55       1.069  14.157  -2.954  1.00  0.00              
ATOM     56  CA  ILE    56       2.467  17.190  -4.800  1.00  0.00              
ATOM     57  CA  PRO    57       3.593  19.899  -2.383  1.00  0.00              
ATOM     58  CA  ARG    58       1.044  22.605  -3.448  1.00  0.00              
ATOM     59  CA  MET    59      -1.818  20.018  -3.264  1.00  0.00              
ATOM     60  CA  HIS    60      -0.713  18.906   0.212  1.00  0.00              
ATOM     61  CA  ASP    61      -0.870  22.533   1.471  1.00  0.00              
ATOM     62  CA  LEU    62      -4.379  22.982   0.054  1.00  0.00              
ATOM     63  CA  LEU    63      -5.593  19.715   1.676  1.00  0.00              
ATOM     64  CA  ASP    64      -4.099  20.730   5.044  1.00  0.00              
ATOM     65  CA  ASN    65      -5.821  24.155   4.662  1.00  0.00              
ATOM     66  CA  LYS    66      -9.267  22.718   4.556  1.00  0.00              
ATOM     67  CA  GLN    67     -10.350  23.410   1.017  1.00  0.00              
ATOM     68  CA  PRO    68     -13.519  21.464   0.793  1.00  0.00              
ATOM     69  CA  LEU    69     -13.602  18.467  -1.463  1.00  0.00              
ATOM     70  CA  PRO    70     -16.099  18.485  -4.313  1.00  0.00              
ATOM     71  CA  GLY    71     -19.677  17.714  -3.474  1.00  0.00              
ATOM     72  CA  ALA    72     -19.968  14.119  -4.657  1.00  0.00              
ATOM     73  CA  PHE    73     -16.510  13.030  -3.360  1.00  0.00              
ATOM     74  CA  ALA    74     -15.182  14.347  -0.078  1.00  0.00              
ATOM     75  CA  VAL    75     -11.545  14.870  -0.820  1.00  0.00              
ATOM     76  CA  ALA    76      -9.995  15.327   2.644  1.00  0.00              
ATOM     77  CA  PRO    77     -10.623  11.747   3.790  1.00  0.00              
ATOM     78  CA  TYR    78      -9.415  10.245   0.514  1.00  0.00              
ATOM     79  CA  TYR    79      -6.138  12.234   0.382  1.00  0.00              
ATOM     80  CA  GLU    80      -5.301  11.315   3.989  1.00  0.00              
ATOM     81  CA  MET    81      -5.987   7.636   3.350  1.00  0.00              
ATOM     82  CA  ALA    82      -3.889   7.469   0.226  1.00  0.00              
ATOM     83  CA  LEU    83      -0.914   9.098   1.878  1.00  0.00              
ATOM     84  CA  ALA    84      -0.933   6.796   4.887  1.00  0.00              
ATOM     85  CA  THR    85      -1.097   3.554   2.846  1.00  0.00              
ATOM     86  CA  ASP    86       1.418   4.460   0.235  1.00  0.00              
ATOM     87  CA  HIS    87       4.314   5.714   2.263  1.00  0.00              
ATOM     88  CA  PRO    88       7.033   5.474  -0.415  1.00  0.00              
ATOM     89  CA  GLN    89       5.518   7.207  -3.452  1.00  0.00              
ATOM     90  CA  ARG    90       4.358  10.131  -1.274  1.00  0.00              
ATOM     91  CA  ALA    91       7.798  10.610   0.255  1.00  0.00              
ATOM     92  CA  LEU    92       9.526  10.620  -3.176  1.00  0.00              
ATOM     93  CA  ILE    93       7.111  13.180  -4.499  1.00  0.00              
ATOM     94  CA  LEU    94       7.627  15.496  -1.514  1.00  0.00              
ATOM     95  CA  ALA    95      11.400  15.130  -1.906  1.00  0.00              
ATOM     96  CA  GLU    96      11.206  16.016  -5.609  1.00  0.00              
ATOM     97  CA  LEU    97       9.047  19.053  -4.870  1.00  0.00              
ATOM     98  CA  GLU    98      11.491  20.244  -2.232  1.00  0.00              
ATOM     99  CA  LYS    99      14.383  19.852  -4.605  1.00  0.00              
ATOM    100  CA  LEU   100      12.621  21.811  -7.327  1.00  0.00              
ATOM    101  CA  ASP   101      11.822  24.660  -4.879  1.00  0.00              
ATOM    102  CA  ALA   102      15.509  24.889  -4.004  1.00  0.00              
ATOM    103  CA  LEU   103      16.414  25.005  -7.710  1.00  0.00              
ATOM    104  CA  PHE   104      13.830  27.739  -8.348  1.00  0.00              
ATOM    105  CA  ALA   105      15.137  29.830  -5.439  1.00  0.00              
ATOM    106  CA  ASP   106      18.748  29.569  -6.535  1.00  0.00              
ATOM    107  CA  ASP   107      17.988  30.471 -10.174  1.00  0.00              
ATOM    108  CA  ALA   108      19.163  27.225 -11.669  1.00  0.00              
ATOM    109  CA  SER   109      16.421  25.912 -14.019  1.00  0.00              
ATOM    110  CA  LEU   110      16.078  22.256 -13.130  1.00  0.00              
ATOM    111  CA  GLU   111      12.547  21.569 -14.231  1.00  0.00              
ATOM    112  CA  HIS   112      12.473  18.637 -16.564  1.00  0.00              
ATOM    113  CA  HIS   113       9.515  19.658 -18.754  1.00  0.00              
ATOM    114  CA  HIS   114      12.694  21.547 -19.549  1.00  0.00              
ATOM    115  CA  HIS   115      11.214  25.234 -18.184  1.00  0.00              
ATOM    116  CA  HIS   116      13.696  28.240 -18.386  1.00  0.00              
ATOM    117  CA  HIS   117      13.143  29.778 -14.518  1.00  0.00              
TER                                                                             
END
