
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0352TS599_5
# Molecule2: number of CA atoms  109 ( 1766),  selected  109 , name T0352.pdb
# PARAMETERS: T0352TS599_5.T0352.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33         1 - 33          4.70    24.70
  LONGEST_CONTINUOUS_SEGMENT:    33         2 - 34          4.89    24.01
  LCS_AVERAGE:     26.21

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22         3 - 24          1.93    19.56
  LCS_AVERAGE:     12.97

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20         3 - 22          0.61    19.08
  LCS_AVERAGE:      8.82

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    4   33     0    3    4    4    4    4    6    7    8   11   13   20   24   29   33   36   37   38   39   43 
LCS_GDT     T       2     T       2      3   21   33     2    3    4    4    7   11   14   20   21   26   27   29   31   33   35   36   37   38   40   43 
LCS_GDT     T       3     T       3     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   36   37   38   40   43 
LCS_GDT     H       4     H       4     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   36   37   38   40   46 
LCS_GDT     D       5     D       5     20   22   33    13   19   20   20   21   21   23   24   24   27   28   29   31   33   35   36   37   39   45   48 
LCS_GDT     R       6     R       6     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   36   37   39   45   46 
LCS_GDT     V       7     V       7     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   36   37   38   45   46 
LCS_GDT     R       8     R       8     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   37   42   43   45   50 
LCS_GDT     L       9     L       9     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   39   42   44   47   50 
LCS_GDT     Q      10     Q      10     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   39   42   43   47   50 
LCS_GDT     L      11     L      11     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   39   42   44   47   51 
LCS_GDT     Q      12     Q      12     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   36   43   44   47   50   51 
LCS_GDT     A      13     A      13     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   43   44   47   50   51 
LCS_GDT     L      14     L      14     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   33   35   43   44   47   50   51 
LCS_GDT     E      15     E      15     20   22   33    13   19   20   20   21   21   23   24   25   27   28   29   31   34   39   43   44   47   50   51 
LCS_GDT     A      16     A      16     20   22   33    11   19   20   20   21   21   23   24   25   27   28   29   31   34   39   43   44   47   50   51 
LCS_GDT     L      17     L      17     20   22   33    11   19   20   20   21   21   23   24   25   27   28   29   31   34   39   43   44   47   50   51 
LCS_GDT     L      18     L      18     20   22   33    11   19   20   20   21   21   23   24   24   27   28   29   31   34   39   43   44   47   50   51 
LCS_GDT     R      19     R      19     20   22   33    11   19   20   20   21   21   23   24   25   27   28   29   31   34   39   43   44   47   50   51 
LCS_GDT     E      20     E      20     20   22   33    11   19   20   20   21   21   23   24   25   27   28   29   31   33   39   43   44   47   50   51 
LCS_GDT     H      21     H      21     20   22   33    11   19   20   20   21   21   23   24   24   27   28   29   31   33   35   38   44   47   50   51 
LCS_GDT     Q      22     Q      22     20   22   33     6   17   20   20   21   21   23   24   25   27   28   29   31   33   39   43   44   47   50   51 
LCS_GDT     H      23     H      23      3   22   33     3    3    5   11   13   20   22   23   25   27   28   29   31   34   39   43   44   47   50   51 
LCS_GDT     W      24     W      24      3   22   33     3    4    5   10   12   19   22   23   25   27   28   29   31   31   35   37   44   47   50   51 
LCS_GDT     R      25     R      25      4    5   33     3    4    5    7    9   19   22   23   25   27   28   29   31   31   35   37   40   42   50   51 
LCS_GDT     N      26     N      26      4    6   33     3    4    5    5    6    9   12   18   25   27   28   29   31   31   33   37   40   42   44   46 
LCS_GDT     D      27     D      27      4    8   33     3    4    4    6    7    7    9   18   25   27   28   29   31   31   33   37   40   42   44   46 
LCS_GDT     E      28     E      28      4    8   33     3    4    4    6    7    8   10   17   25   27   28   29   31   31   33   37   40   42   44   46 
LCS_GDT     P      29     P      29      4    8   33     3    4    4    6    7    8   12   18   25   27   28   29   31   31   33   37   40   41   44   46 
LCS_GDT     Q      30     Q      30      4    8   33     3    4    4    6    7    8   12   18   25   27   28   29   31   31   33   37   40   42   44   46 
LCS_GDT     P      31     P      31      4    8   33     3    4    4    6    7    9   10   14   18   22   27   29   31   31   33   37   40   42   44   46 
LCS_GDT     H      32     H      32      4    8   33     3    4    4    6    7    9   10   14   19   23   27   29   31   31   33   37   40   42   44   46 
LCS_GDT     Q      33     Q      33      4    8   33     3    4    4    6    7    9   10   12   15   18   21   23   30   31   33   37   40   42   44   46 
LCS_GDT     F      34     F      34      4    8   33     3    4    4    6    7    9   10   12   13   17   20   23   27   30   32   37   40   42   44   46 
LCS_GDT     N      35     N      35      4    5   14     3    4    4    6    6    8    9   11   14   17   19   22   27   30   32   33   36   37   39   45 
LCS_GDT     S      36     S      36      4    5   14     3    4    4    5    7    8    9   12   14   17   19   22   27   30   32   33   36   37   38   43 
LCS_GDT     T      37     T      37      4    5   20     3    4    4    4    7    8    9   12   14   17   19   22   27   30   32   33   36   37   38   40 
LCS_GDT     Q      38     Q      38      4    5   20     3    4    4    4    5    5    6   12   14   17   19   22   27   30   32   33   36   37   38   42 
LCS_GDT     P      39     P      39      4    5   21     3    4    5    6    8   13   16   18   18   21   23   24   27   30   32   33   36   37   38   42 
LCS_GDT     F      40     F      40      4    7   21     3    4    9   11   15   17   19   20   22   23   25   27   28   30   35   36   43   47   50   51 
LCS_GDT     F      41     F      41      4    7   21     3    4    6   10   15   17   19   20   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     M      42     M      42      6    7   21     3   12   15   20   21   21   23   24   24   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     D      43     D      43      6    7   21     3    4    6    9   10   21   23   24   24   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     T      44     T      44      6    7   21     3    4    6    9   10   11   13   14   21   26   26   28   30   34   39   43   44   47   50   51 
LCS_GDT     M      45     M      45      6    7   21     3    4    6    9   10   11   13   14   17   21   25   27   29   33   34   39   40   42   47   50 
LCS_GDT     E      46     E      46      6    7   28     3    3    6    9   10   11   13   14   17   21   25   27   28   29   31   32   36   37   40   43 
LCS_GDT     P      47     P      47      6    7   28     3    3    6    7   10   11   13   15   18   21   25   27   28   30   32   33   36   37   38   40 
LCS_GDT     L      48     L      48      3    6   28     3    3    4    6    8   11   13   15   18   21   25   27   28   30   34   34   36   38   40   43 
LCS_GDT     E      49     E      49      5    6   28     3    4    5    5    8   10   13   15   18   21   25   27   28   30   32   34   36   37   40   43 
LCS_GDT     W      50     W      50      5    6   28     3    4    5    5    7    7    9    9   12   15   16   22   27   30   32   33   36   37   38   40 
LCS_GDT     L      51     L      51      5    6   28     3    4    5    5    7    9   12   13   14   17   19   22   27   30   32   33   36   37   38   40 
LCS_GDT     Q      52     Q      52      5    6   28     3    4    6    9   10   21   23   24   24   26   27   28   30   33   35   36   37   38   42   50 
LCS_GDT     W      53     W      53      5    6   28     3    3    6    9   10   11   23   24   24   26   27   28   30   33   35   36   37   47   50   51 
LCS_GDT     V      54     V      54      3    6   28     3    3    5    9   10   11   13   15   18   20   24   27   29   31   32   36   37   42   44   46 
LCS_GDT     L      55     L      55      3    4   28     3    3    4    6    7   10   13   15   18   20   24   27   28   31   35   37   40   42   44   46 
LCS_GDT     I      56     I      56      5   15   28     4    4    7   12   13   17   19   20   22   23   25   27   28   30   32   37   40   42   44   46 
LCS_GDT     P      57     P      57      9   16   28     4    8    9   12   15   17   19   20   22   23   23   26   28   30   32   37   40   42   44   46 
LCS_GDT     R      58     R      58      9   16   28     4    8    9   12   15   17   19   20   22   23   25   27   28   30   32   37   40   42   44   46 
LCS_GDT     M      59     M      59      9   16   28     4    8    9   12   15   17   19   20   22   23   25   27   28   30   32   37   40   41   41   45 
LCS_GDT     H      60     H      60      9   16   28     6    8    9   12   15   17   19   20   22   23   25   27   28   30   32   37   40   41   44   46 
LCS_GDT     D      61     D      61      9   16   28     6    8    9   12   15   17   19   20   22   23   25   27   28   30   32   37   40   42   44   46 
LCS_GDT     L      62     L      62      9   16   28     6    8    9   10   15   17   19   20   22   23   25   27   28   30   32   37   38   41   41   45 
LCS_GDT     L      63     L      63      9   16   28     6    8    9   10   15   17   19   20   22   23   25   27   28   30   32   33   36   38   41   42 
LCS_GDT     D      64     D      64      9   16   28     6    8    9   12   15   17   19   20   22   23   25   27   28   29   32   33   36   38   41   45 
LCS_GDT     N      65     N      65      9   16   28     6    8    9   12   15   17   19   20   22   23   25   27   28   29   32   37   40   41   41   45 
LCS_GDT     K      66     K      66      3   16   28     3    3    4    4   13   17   19   20   22   23   25   27   28   29   32   33   38   38   41   42 
LCS_GDT     Q      67     Q      67      3   16   28     3    3    4   12   15   17   19   20   22   23   25   27   28   29   31   33   36   37   38   42 
LCS_GDT     P      68     P      68      4   16   28     3    4    6   10   13   16   19   20   22   23   23   24   28   29   31   32   33   35   37   40 
LCS_GDT     L      69     L      69      4   16   28     3    6    9   12   13   17   19   20   22   23   25   27   28   29   31   32   33   35   37   40 
LCS_GDT     P      70     P      70      4   16   28     3    6    9   12   15   17   19   20   22   23   25   27   28   29   31   32   33   35   35   37 
LCS_GDT     G      71     G      71      4   16   28     3    3    4   10   15   17   19   20   22   23   25   27   28   29   31   32   33   35   35   37 
LCS_GDT     A      72     A      72      5   16   28     3    6    9   12   15   17   19   20   22   23   25   27   28   29   31   32   33   35   35   37 
LCS_GDT     F      73     F      73      5    6   28     1    5    6    8   10   11   18   20   21   23   25   27   28   29   31   32   33   35   35   37 
LCS_GDT     A      74     A      74      5    6   28     3    5    6    7    7    7   10   11   14   15   19   23   26   28   30   31   33   35   35   37 
LCS_GDT     V      75     V      75      5   10   24     3    5    6    7    8    9   10   12   13   14   16   17   20   21   23   24   28   33   35   43 
LCS_GDT     A      76     A      76      8   10   19     3    8    8    8    8    9   12   13   13   14   14   17   20   21   23   24   26   33   39   41 
LCS_GDT     P      77     P      77      8   10   19     7    8    8    8    8    9   12   13   18   23   26   28   30   33   35   36   37   38   43   50 
LCS_GDT     Y      78     Y      78      8   10   19     7    8    8    8    8    9   12   13   15   19   24   27   30   33   39   43   44   47   50   51 
LCS_GDT     Y      79     Y      79      8   10   19     7    8    8    8    8    9   12   13   13   14   17   20   26   30   39   43   44   47   50   51 
LCS_GDT     E      80     E      80      8   10   24     7    8    8    8    8    9   12   13   15   19   22   25   29   33   35   39   43   47   50   51 
LCS_GDT     M      81     M      81      8   10   29     7    8    8    8    8    9   12   13   13   14   20   25   28   33   34   39   43   47   50   51 
LCS_GDT     A      82     A      82      8   10   29     7    8    8    8    8   10   15   20   22   22   22   26   29   34   39   43   44   47   50   51 
LCS_GDT     L      83     L      83      8   10   29     7    8    8    8    8   13   15   21   22   22   22   26   30   34   39   43   44   47   50   51 
LCS_GDT     A      84     A      84      6   10   29     3    5    6    6   10   14   15   21   22   22   23   24   29   32   39   43   44   47   50   51 
LCS_GDT     T      85     T      85      6   18   29     3    5    7   11   15   16   18   19   21   22   23   23   23   24   25   26   27   27   31   39 
LCS_GDT     D      86     D      86      6   18   29     3    5    6    6    7   16   18   20   21   22   23   23   23   24   26   32   35   36   45   47 
LCS_GDT     H      87     H      87      6   18   29     3    5    6    6    7    9   16   18   20   22   23   26   30   34   39   43   44   47   50   51 
LCS_GDT     P      88     P      88     15   19   29     4    8   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     Q      89     Q      89     15   19   29     4   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     R      90     R      90     15   19   29     5   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     A      91     A      91     15   19   29     5   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     L      92     L      92     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     I      93     I      93     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     L      94     L      94     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     A      95     A      95     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     E      96     E      96     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     L      97     L      97     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     E      98     E      98     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     K      99     K      99     15   19   29     9   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     L     100     L     100     15   19   29     9   13   14   17   19   19   19   21   22   22   23   23   30   31   36   43   44   47   50   51 
LCS_GDT     D     101     D     101     15   19   29     8   13   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     A     102     A     102     15   19   29     5   10   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     L     103     L     103     12   19   29     5    7   11   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     F     104     F     104     11   19   29     5    7   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     A     105     A     105     11   19   29     5    7   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   45   50   51 
LCS_GDT     D     106     D     106     11   19   29     4    7   14   17   19   19   19   21   22   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     D     107     D     107      4   17   29     3    4    5    8   11   13   18   20   21   26   27   28   30   34   39   43   44   45   50   51 
LCS_GDT     A     108     A     108      4   10   29     3    4    5    8   11   16   18   20   21   26   27   28   30   34   39   43   44   47   50   51 
LCS_GDT     S     109     S     109      4    5   29     3    4    5    7    8   10   12   17   21   26   27   28   30   34   39   43   44   47   50   51 
LCS_AVERAGE  LCS_A:  16.00  (   8.82   12.97   26.21 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     19     20     20     21     21     23     24     25     27     28     29     31     34     39     43     44     47     50     51 
GDT PERCENT_CA  11.93  17.43  18.35  18.35  19.27  19.27  21.10  22.02  22.94  24.77  25.69  26.61  28.44  31.19  35.78  39.45  40.37  43.12  45.87  46.79
GDT RMS_LOCAL    0.35   0.53   0.61   0.61   0.97   0.97   1.51   1.75   3.65   3.77   3.84   4.01   4.32   4.95   5.55   5.82   5.94   6.54   6.62   6.73
GDT RMS_ALL_CA  19.27  19.12  19.08  19.08  19.00  19.00  18.92  18.88  25.44  25.09  25.28  24.76  24.92  19.70  19.45  19.54  19.53  18.58  18.56  18.57

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.047
LGA    T       2      T       2          6.256
LGA    T       3      T       3          1.560
LGA    H       4      H       4          1.134
LGA    D       5      D       5          1.153
LGA    R       6      R       6          1.530
LGA    V       7      V       7          1.533
LGA    R       8      R       8          1.280
LGA    L       9      L       9          1.122
LGA    Q      10      Q      10          1.035
LGA    L      11      L      11          1.454
LGA    Q      12      Q      12          1.549
LGA    A      13      A      13          1.075
LGA    L      14      L      14          1.573
LGA    E      15      E      15          1.888
LGA    A      16      A      16          1.252
LGA    L      17      L      17          1.985
LGA    L      18      L      18          2.629
LGA    R      19      R      19          2.338
LGA    E      20      E      20          2.506
LGA    H      21      H      21          2.636
LGA    Q      22      Q      22          3.529
LGA    H      23      H      23          7.540
LGA    W      24      W      24         10.203
LGA    R      25      R      25         11.318
LGA    N      26      N      26         18.157
LGA    D      27      D      27         22.427
LGA    E      28      E      28         27.276
LGA    P      29      P      29         28.405
LGA    Q      30      Q      30         30.861
LGA    P      31      P      31         31.925
LGA    H      32      H      32         31.360
LGA    Q      33      Q      33         25.848
LGA    F      34      F      34         27.488
LGA    N      35      N      35         30.372
LGA    S      36      S      36         27.669
LGA    T      37      T      37         25.253
LGA    Q      38      Q      38         19.592
LGA    P      39      P      39         16.633
LGA    F      40      F      40         10.552
LGA    F      41      F      41          5.690
LGA    M      42      M      42          1.142
LGA    D      43      D      43          2.937
LGA    T      44      T      44          5.799
LGA    M      45      M      45          6.310
LGA    E      46      E      46          8.940
LGA    P      47      P      47         13.107
LGA    L      48      L      48          7.597
LGA    E      49      E      49          7.451
LGA    W      50      W      50         10.569
LGA    L      51      L      51          9.185
LGA    Q      52      Q      52          3.224
LGA    W      53      W      53          3.231
LGA    V      54      V      54          6.604
LGA    L      55      L      55          7.511
LGA    I      56      I      56         12.805
LGA    P      57      P      57         14.469
LGA    R      58      R      58         17.219
LGA    M      59      M      59         20.204
LGA    H      60      H      60         19.902
LGA    D      61      D      61         19.749
LGA    L      62      L      62         24.440
LGA    L      63      L      63         26.580
LGA    D      64      D      64         24.189
LGA    N      65      N      65         25.344
LGA    K      66      K      66         24.886
LGA    Q      67      Q      67         27.199
LGA    P      68      P      68         25.684
LGA    L      69      L      69         25.351
LGA    P      70      P      70         25.195
LGA    G      71      G      71         27.672
LGA    A      72      A      72         25.235
LGA    F      73      F      73         19.103
LGA    A      74      A      74         17.539
LGA    V      75      V      75         16.251
LGA    A      76      A      76         16.805
LGA    P      77      P      77         11.104
LGA    Y      78      Y      78         13.533
LGA    Y      79      Y      79         17.412
LGA    E      80      E      80         14.610
LGA    M      81      M      81         12.799
LGA    A      82      A      82         18.099
LGA    L      83      L      83         19.900
LGA    A      84      A      84         20.179
LGA    T      85      T      85         21.736
LGA    D      86      D      86         24.000
LGA    H      87      H      87         20.043
LGA    P      88      P      88         24.068
LGA    Q      89      Q      89         23.915
LGA    R      90      R      90         19.408
LGA    A      91      A      91         21.005
LGA    L      92      L      92         22.643
LGA    I      93      I      93         19.258
LGA    L      94      L      94         19.174
LGA    A      95      A      95         22.316
LGA    E      96      E      96         20.500
LGA    L      97      L      97         18.445
LGA    E      98      E      98         22.398
LGA    K      99      K      99         23.297
LGA    L     100      L     100         20.394
LGA    D     101      D     101         22.277
LGA    A     102      A     102         27.518
LGA    L     103      L     103         27.340
LGA    F     104      F     104         24.737
LGA    A     105      A     105         29.358
LGA    D     106      D     106         32.091
LGA    D     107      D     107         33.472
LGA    A     108      A     108         35.349
LGA    S     109      S     109         34.015

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     24    1.75    24.312    20.509     1.294

LGA_LOCAL      RMSD =  1.754  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.922  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 14.352  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.580318 * X  +  -0.473486 * Y  +  -0.662602 * Z  +  -6.168761
  Y_new =  -0.462687 * X  +  -0.477864 * Y  +   0.746704 * Z  +   8.598458
  Z_new =  -0.670188 * X  +   0.739903 * Y  +   0.058238 * Z  +   3.479744 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.492249   -1.649344  [ DEG:    85.4995    -94.5005 ]
  Theta =   0.734462    2.407131  [ DEG:    42.0816    137.9185 ]
  Phi   =  -2.468501    0.673092  [ DEG:  -141.4347     38.5653 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0352TS599_5                                  
REMARK     2: T0352.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0352TS599_5.T0352.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   24   1.75  20.509    14.35
REMARK  ---------------------------------------------------------- 
MOLECULE T0352TS599_5
PFRMAT TS                                                                       
TARGET T0352                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      -4.394  -7.113  -0.543  1.00  0.00              
ATOM      2  CA  THR     2      -4.807  -6.677  -4.658  1.00  0.00              
ATOM      3  CA  THR     3      -2.422  -6.439  -7.317  1.00  0.00              
ATOM      4  CA  HIS     4      -0.650  -2.750  -7.288  1.00  0.00              
ATOM      5  CA  ASP     5      -2.016  -2.196 -10.721  1.00  0.00              
ATOM      6  CA  ARG     6      -5.508  -3.234  -9.723  1.00  0.00              
ATOM      7  CA  VAL     7      -5.408  -0.874  -6.687  1.00  0.00              
ATOM      8  CA  ARG     8      -4.200   2.012  -8.837  1.00  0.00              
ATOM      9  CA  LEU     9      -7.075   1.272 -11.288  1.00  0.00              
ATOM     10  CA  GLN    10      -9.555   1.228  -8.370  1.00  0.00              
ATOM     11  CA  LEU    11      -8.248   4.604  -7.129  1.00  0.00              
ATOM     12  CA  GLN    12      -8.577   6.076 -10.614  1.00  0.00              
ATOM     13  CA  ALA    13     -12.182   4.797 -10.871  1.00  0.00              
ATOM     14  CA  LEU    14     -12.978   6.304  -7.460  1.00  0.00              
ATOM     15  CA  GLU    15     -11.445   9.657  -8.493  1.00  0.00              
ATOM     16  CA  ALA    16     -13.553   9.699 -11.671  1.00  0.00              
ATOM     17  CA  LEU    17     -16.720   8.941  -9.638  1.00  0.00              
ATOM     18  CA  LEU    18     -16.116  11.556  -7.092  1.00  0.00              
ATOM     19  CA  ARG    19     -15.545  14.117  -9.884  1.00  0.00              
ATOM     20  CA  GLU    20     -18.630  13.125 -11.905  1.00  0.00              
ATOM     21  CA  HIS    21     -20.901  13.122  -8.921  1.00  0.00              
ATOM     22  CA  GLN    22     -19.688  16.554  -7.754  1.00  0.00              
ATOM     23  CA  HIS    23     -18.127  14.970  -4.638  1.00  0.00              
ATOM     24  CA  TRP    24     -14.838  16.933  -4.602  1.00  0.00              
ATOM     25  CA  ARG    25     -15.975  20.592  -4.940  1.00  0.00              
ATOM     26  CA  ASN    26     -18.529  19.811  -2.217  1.00  0.00              
ATOM     27  CA  ASP    27     -16.708  17.975   0.618  1.00  0.00              
ATOM     28  CA  GLU    28     -17.002  20.026   3.736  1.00  0.00              
ATOM     29  CA  PRO    29     -16.673  18.298   6.970  1.00  0.00              
ATOM     30  CA  GLN    30     -19.865  18.239   8.918  1.00  0.00              
ATOM     31  CA  PRO    31     -21.028  20.958  11.215  1.00  0.00              
ATOM     32  CA  HIS    32     -20.653  18.676  14.205  1.00  0.00              
ATOM     33  CA  GLN    33     -16.930  18.146  13.426  1.00  0.00              
ATOM     34  CA  PHE    34     -16.373  21.886  13.139  1.00  0.00              
ATOM     35  CA  ASN    35     -18.178  22.654  16.402  1.00  0.00              
ATOM     36  CA  SER    36     -16.287  20.066  18.459  1.00  0.00              
ATOM     37  CA  THR    37     -12.728  20.892  17.634  1.00  0.00              
ATOM     38  CA  GLN    38     -11.557  18.257  15.145  1.00  0.00              
ATOM     39  CA  PRO    39     -10.539  19.737  11.872  1.00  0.00              
ATOM     40  CA  PHE    40     -12.962  19.694   8.909  1.00  0.00              
ATOM     41  CA  PHE    41     -11.503  20.402   5.482  1.00  0.00              
ATOM     42  CA  MET    42     -12.700  18.847   2.289  1.00  0.00              
ATOM     43  CA  ASP    43     -12.632  21.682  -0.234  1.00  0.00              
ATOM     44  CA  THR    44     -11.550  19.804  -3.411  1.00  0.00              
ATOM     45  CA  MET    45      -9.011  17.750  -1.617  1.00  0.00              
ATOM     46  CA  GLU    46      -5.897  15.984  -2.717  1.00  0.00              
ATOM     47  CA  PRO    47      -5.552  12.324  -1.620  1.00  0.00              
ATOM     48  CA  LEU    48      -2.891  13.052   1.006  1.00  0.00              
ATOM     49  CA  GLU    49      -5.053  15.813   2.484  1.00  0.00              
ATOM     50  CA  TRP    50      -8.083  13.473   2.624  1.00  0.00              
ATOM     51  CA  LEU    51      -6.091  10.827   4.506  1.00  0.00              
ATOM     52  CA  GLN    52      -4.832  13.420   7.032  1.00  0.00              
ATOM     53  CA  TRP    53      -8.349  14.722   7.567  1.00  0.00              
ATOM     54  CA  VAL    54      -9.927  11.293   8.182  1.00  0.00              
ATOM     55  CA  LEU    55      -7.264  10.294  10.747  1.00  0.00              
ATOM     56  CA  ILE    56      -6.840  13.507  12.696  1.00  0.00              
ATOM     57  CA  PRO    57      -3.065  13.889  13.125  1.00  0.00              
ATOM     58  CA  ARG    58      -3.022  15.202  16.672  1.00  0.00              
ATOM     59  CA  MET    59      -5.275  12.308  17.604  1.00  0.00              
ATOM     60  CA  HIS    60      -2.958   9.771  16.030  1.00  0.00              
ATOM     61  CA  ASP    61      -0.016  11.261  17.948  1.00  0.00              
ATOM     62  CA  LEU    62      -1.982  11.114  21.226  1.00  0.00              
ATOM     63  CA  LEU    63      -2.954   7.480  20.582  1.00  0.00              
ATOM     64  CA  ASP    64       0.625   6.562  19.695  1.00  0.00              
ATOM     65  CA  ASN    65       1.978   8.250  22.847  1.00  0.00              
ATOM     66  CA  LYS    66      -0.477   6.574  25.233  1.00  0.00              
ATOM     67  CA  GLN    67      -2.283   9.812  26.227  1.00  0.00              
ATOM     68  CA  PRO    68      -5.993   9.304  26.379  1.00  0.00              
ATOM     69  CA  LEU    69      -8.120  10.928  23.680  1.00  0.00              
ATOM     70  CA  PRO    70      -9.062  14.497  24.402  1.00  0.00              
ATOM     71  CA  GLY    71     -12.567  15.003  25.694  1.00  0.00              
ATOM     72  CA  ALA    72     -13.597  17.671  23.147  1.00  0.00              
ATOM     73  CA  PHE    73     -12.332  15.467  20.252  1.00  0.00              
ATOM     74  CA  ALA    74     -13.449  11.914  21.228  1.00  0.00              
ATOM     75  CA  VAL    75     -10.611  10.004  19.711  1.00  0.00              
ATOM     76  CA  ALA    76     -11.801   6.389  19.694  1.00  0.00              
ATOM     77  CA  PRO    77     -14.992   7.215  17.730  1.00  0.00              
ATOM     78  CA  TYR    78     -13.169   9.317  15.192  1.00  0.00              
ATOM     79  CA  TYR    79     -10.430   6.729  14.435  1.00  0.00              
ATOM     80  CA  GLU    80     -12.913   3.930  13.928  1.00  0.00              
ATOM     81  CA  MET    81     -15.007   6.016  11.586  1.00  0.00              
ATOM     82  CA  ALA    82     -12.080   7.131   9.460  1.00  0.00              
ATOM     83  CA  LEU    83     -10.700   3.673   9.002  1.00  0.00              
ATOM     84  CA  ALA    84     -14.003   2.184   7.989  1.00  0.00              
ATOM     85  CA  THR    85     -14.841   4.842   5.366  1.00  0.00              
ATOM     86  CA  ASP    86     -11.501   4.622   3.669  1.00  0.00              
ATOM     87  CA  HIS    87     -11.749   0.849   3.053  1.00  0.00              
ATOM     88  CA  PRO    88      -8.848  -0.387   5.087  1.00  0.00              
ATOM     89  CA  GLN    89      -7.469  -2.382   2.131  1.00  0.00              
ATOM     90  CA  ARG    90      -7.759   0.791  -0.005  1.00  0.00              
ATOM     91  CA  ALA    91      -5.731   2.807   2.525  1.00  0.00              
ATOM     92  CA  LEU    92      -2.991   0.141   2.614  1.00  0.00              
ATOM     93  CA  ILE    93      -2.886   0.193  -1.214  1.00  0.00              
ATOM     94  CA  LEU    94      -2.531   4.008  -1.348  1.00  0.00              
ATOM     95  CA  ALA    95       0.251   3.856   1.233  1.00  0.00              
ATOM     96  CA  GLU    96       2.081   1.188  -0.725  1.00  0.00              
ATOM     97  CA  LEU    97       1.749   3.141  -4.015  1.00  0.00              
ATOM     98  CA  GLU    98       3.082   6.287  -2.333  1.00  0.00              
ATOM     99  CA  LYS    99       6.060   4.298  -0.995  1.00  0.00              
ATOM    100  CA  LEU   100       6.803   2.907  -4.436  1.00  0.00              
ATOM    101  CA  ASP   101       6.642   6.392  -5.905  1.00  0.00              
ATOM    102  CA  ALA   102       9.331   7.571  -3.490  1.00  0.00              
ATOM    103  CA  LEU   103      11.457   4.548  -4.495  1.00  0.00              
ATOM    104  CA  PHE   104      10.961   5.372  -8.215  1.00  0.00              
ATOM    105  CA  ALA   105      12.036   8.975  -7.642  1.00  0.00              
ATOM    106  CA  ASP   106      15.165   7.926  -5.736  1.00  0.00              
ATOM    107  CA  ASP   107      16.204   5.379  -8.407  1.00  0.00              
ATOM    108  CA  ALA   108      15.983   2.343  -6.178  1.00  0.00              
ATOM    109  CA  SER   109      13.847  -0.393  -7.837  1.00  0.00              
ATOM    110  CA  LEU   110      10.912  -1.385  -5.626  1.00  0.00              
ATOM    111  CA  GLU   111       8.635  -2.833  -8.303  1.00  0.00              
ATOM    112  CA  HIS   112       7.627  -6.316  -7.143  1.00  0.00              
ATOM    113  CA  HIS   113       7.060  -7.882 -10.568  1.00  0.00              
ATOM    114  CA  HIS   114      10.742  -7.527  -9.662  1.00  0.00              
ATOM    115  CA  HIS   115      11.530  -4.871 -12.827  1.00  0.00              
ATOM    116  CA  HIS   116      15.111  -3.101 -12.875  1.00  0.00              
ATOM    117  CA  HIS   117      15.290   0.286 -11.669  1.00  0.00              
TER                                                                             
END
