
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS393_1
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS393_1.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        34 - 71          4.64    16.67
  LONGEST_CONTINUOUS_SEGMENT:    38        35 - 72          4.66    17.02
  LCS_AVERAGE:     22.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        40 - 66          1.89    17.83
  LCS_AVERAGE:     11.18

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        45 - 63          0.94    18.01
  LCS_AVERAGE:      6.99

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      4   19   25     3    4    4    8   13   19   23   23   27   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     E       2     E       2     16   19   25     3    4   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     I       3     I       3     16   19   25     7   15   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     Q       4     Q       4     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     E       5     E       5     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     I       6     I       6     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     S       7     S       7     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     K       8     K       8     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     L       9     L       9     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     A      10     A      10     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     I      11     I      11     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     E      12     E      12     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     A      13     A      13     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     L      14     L      14     16   19   25    13   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     E      15     E      15     16   19   25    13   14   18   22   26   28   31   35   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     D      16     D      16     16   19   25    13   14   18   22   26   28   31   33   38   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     I      17     I      17     16   19   25     3    5   12   21   25   28   31   34   38   41   43   46   48   50   53   56   60   61   63   64 
LCS_GDT     K      18     K      18      4   19   25     3    5    7    7   18   23   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     G      19     G      19      4   19   25     3    5    8   11   18   23   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     K      20     K      20      4    6   25     3    3    4    4    7    8   11   14   20   26   26   27   27   32   35   44   45   49   56   63 
LCS_GDT     D      21     D      21      4    8   25     3    5    5    5    5    8    9   11   19   22   25   26   32   34   39   41   43   46   48   51 
LCS_GDT     I      22     I      22      5    8   25     3    5    6    7   10   17   23   23   24   26   34   41   44   49   53   56   60   61   63   64 
LCS_GDT     I      23     I      23      5    8   25     3    5    6    7   13   19   23   23   24   26   26   31   44   49   52   56   60   61   63   64 
LCS_GDT     E      24     E      24      5    8   25     3    4    6    7    9   12   14   16   19   22   26   29   32   36   42   45   51   56   63   63 
LCS_GDT     L      25     L      25      5    8   25     3    4    6    7    9   12   14   16   19   22   26   29   32   34   39   41   43   46   48   51 
LCS_GDT     D      26     D      26      5    8   12     3    4    6    7    9   12   14   16   19   22   25   29   32   34   39   41   43   46   48   51 
LCS_GDT     T      27     T      27      5    8   12     3    4    6    7    9   12   14   16   19   22   25   29   32   34   39   41   43   46   48   51 
LCS_GDT     S      28     S      28      5    8   12     3    4    6    7    8   10   12   15   19   22   25   26   32   34   39   41   43   46   48   51 
LCS_GDT     K      29     K      29      4    8   12     3    3    4    5    6    8    9   13   14   16   19   23   29   30   36   39   40   43   48   51 
LCS_GDT     L      30     L      30      4    5   12     3    3    4    4    5    7    9   10   14   15   18   21   24   26   30   34   38   44   47   51 
LCS_GDT     T      31     T      31      3    5   12     3    3    3    4    5    7    9   10   13   15   18   23   25   29   31   35   38   44   47   51 
LCS_GDT     S      32     S      32      3    6   13     3    3    3    5    6    7    9   10   13   15   16   19   21   26   29   34   37   44   46   51 
LCS_GDT     L      33     L      33      4    6   13     3    4    4    5    6    7    9   10   14   15   17   19   21   25   30   33   37   44   46   51 
LCS_GDT     F      34     F      34      4    7   38     3    4    4    6    7    9    9   11   14   19   23   25   31   33   39   40   45   50   54   56 
LCS_GDT     Q      35     Q      35      4    7   38     3    4    4    6    7    9    9   11   18   23   27   30   34   37   39   45   51   56   63   63 
LCS_GDT     R      36     R      36      4    7   38     3    4    5    6   11   16   20   26   34   36   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     M      37     M      37      4    7   38     3    4    5    6   11   15   21   27   34   36   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     I      38     I      38      4    7   38     3    5    5    6    8   11   25   28   31   37   42   46   48   52   53   56   60   61   63   64 
LCS_GDT     V      39     V      39      4    7   38     3    4    5    6    9   12   16   22   31   37   40   42   48   52   53   56   60   61   63   64 
LCS_GDT     A      40     A      40      4   27   38     3    4    5   15   24   25   27   28   31   34   38   42   46   52   53   56   60   61   63   64 
LCS_GDT     T      41     T      41      4   27   38     3    4    8   21   24   25   27   29   31   37   40   42   48   52   53   56   60   61   63   64 
LCS_GDT     G      42     G      42      4   27   38     3    4    5    6    9   13   15   19   27   31   36   40   45   48   53   56   60   61   63   64 
LCS_GDT     D      43     D      43      4   27   38     3    4   17   21   24   25   28   30   33   37   40   45   48   52   53   56   60   61   63   64 
LCS_GDT     S      44     S      44     18   27   38     3    3    4   16   24   25   27   30   33   35   40   45   48   52   53   56   60   61   63   64 
LCS_GDT     N      45     N      45     19   27   38    10   16   18   21   24   28   31   34   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     R      46     R      46     19   27   38    11   16   18   21   24   28   31   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     Q      47     Q      47     19   27   38    11   16   18   21   24   28   31   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     V      48     V      48     19   27   38    11   16   18   21   24   28   31   34   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     K      49     K      49     19   27   38    11   16   18   21   24   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     A      50     A      50     19   27   38    11   16   18   21   24   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     L      51     L      51     19   27   38    11   16   18   21   24   28   31   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     A      52     A      52     19   27   38    11   16   18   21   24   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     N      53     N      53     19   27   38    11   16   18   21   24   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     S      54     S      54     19   27   38    11   16   18   21   24   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     V      55     V      55     19   27   38    11   16   18   21   24   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     Q      56     Q      56     19   27   38    11   16   18   21   24   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     V      57     V      57     19   27   38    11   16   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     K      58     K      58     19   27   38     9   16   18   21   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     L      59     L      59     19   27   38     9   16   18   21   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     K      60     K      60     19   27   38    11   16   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     E      61     E      61     19   27   38     5   16   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     A      62     A      62     19   27   38     3    9   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     G      63     G      63     19   27   38     0   14   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     V      64     V      64      5   27   38     2    4   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     D      65     D      65      5   27   38     2    7   18   22   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     I      66     I      66      5   27   38     0    4   11   21   26   28   32   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     V      67     V      67      4   12   38     3    4    7    8   16   21   26   29   32   36   39   46   48   51   53   56   60   61   63   64 
LCS_GDT     G      68     G      68      4    9   38     8   14   18   22   26   28   31   35   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     S      69     S      69      4    8   38     3    3    6   13   19   27   31   36   39   42   43   46   48   52   53   56   60   61   63   64 
LCS_GDT     E      70     E      70      4    8   38     3    3    5   12   15   22   28   33   36   40   42   45   48   50   53   56   60   61   63   64 
LCS_GDT     G      71     G      71      3    7   38     3    3    4    7   17   22   28   31   34   40   42   45   48   49   52   56   60   61   63   63 
LCS_GDT     H      72     H      72      4    7   38     4    4    4    6    9   11   13   17   21   27   31   34   38   40   44   45   48   50   60   63 
LCS_GDT     E      73     E      73      4    7   33     4    4    4    8    9   11   12   13   17   22   25   30   32   37   39   41   45   47   50   53 
LCS_GDT     S      74     S      74      4    6   26     4    4    4    6    9   11   13   15   16   20   25   30   33   37   39   43   45   46   50   53 
LCS_GDT     G      75     G      75      4    6   26     4    4    4    7   10   11   13   17   21   27   31   32   34   37   40   43   45   47   50   53 
LCS_GDT     E      76     E      76      3    6   26     3    3    5    7   11   15   18   22   28   30   32   35   38   41   44   45   48   50   53   57 
LCS_GDT     W      77     W      77      4    6   25     1    4    5    6    7   10   10   13   15   28   32   34   38   39   41   43   47   50   53   57 
LCS_GDT     V      78     V      78      4    6   18     1    4    5    5    7   10   12   13   15   16   20   21   26   34   40   43   45   48   50   54 
LCS_GDT     L      79     L      79      4    7   22     3    4    5    5    7   10   12   13   15   16   20   26   29   34   36   41   43   46   48   51 
LCS_GDT     V      80     V      80      4    9   25     3    4    5    5    7   10   12   15   18   22   26   29   32   34   39   41   43   46   48   51 
LCS_GDT     D      81     D      81      4    9   25     3    3    6    7    9   12   14   16   19   22   26   29   32   34   39   41   43   46   48   51 
LCS_GDT     A      82     A      82      4    9   25     3    5    7    7    8   12   14   16   19   22   26   29   32   34   39   41   43   46   48   51 
LCS_GDT     G      83     G      83      6    9   25     3    5    7    7    8   10   14   16   19   22   26   29   32   34   39   41   43   46   48   51 
LCS_GDT     D      84     D      84      6    9   25     3    4    7    7    8   10   12   16   19   22   25   29   32   34   39   41   43   46   48   51 
LCS_GDT     V      85     V      85      6    9   25     3    5    7    7    9   12   14   16   19   22   26   29   32   34   39   41   43   46   48   51 
LCS_GDT     V      86     V      86      6    9   25     3    5    7    7    8   11   14   16   19   22   26   29   32   34   39   41   43   47   53   56 
LCS_GDT     V      87     V      87      6    9   25     3    5    7    7    8    9   12   15   19   22   26   29   32   34   45   46   51   58   63   63 
LCS_GDT     H      88     H      88      6    9   25     3    5    7    7    8    9   11   13   16   36   42   45   48   52   53   56   60   61   63   64 
LCS_GDT     V      89     V      89      4    8   25     3    4    4    6    7    9   12   16   19   22   26   29   32   34   51   56   60   61   63   64 
LCS_GDT     M      90     M      90      4    6   25     3    4    4    5    7    9   12   16   19   22   35   42   45   52   53   56   60   61   63   64 
LCS_GDT     L      91     L      91      4    9   25     3    4    4    7    8    9   12   14   17   22   32   35   43   46   52   56   59   61   63   64 
LCS_GDT     P      92     P      92      8    9   25     6    8    8    8    9   11   12   24   28   33   36   40   43   49   52   54   58   61   63   64 
LCS_GDT     A      93     A      93      8    9   25     6    8    8    8    9   11   11   15   18   22   26   29   32   34   39   50   54   58   63   64 
LCS_GDT     V      94     V      94      8    9   25     6    8    8    8    9   11   12   16   19   22   34   41   44   49   52   54   58   61   63   64 
LCS_GDT     R      95     R      95      8    9   25     6    8    8    8    9   11   12   14   17   22   34   41   44   49   52   54   58   59   62   64 
LCS_GDT     D      96     D      96      8    9   25     6    8    8    8   10   13   18   20   21   26   26   29   32   34   39   53   54   54   56   59 
LCS_GDT     Y      97     Y      97      8    9   25     6    8    8    8    9   11   16   18   19   22   26   29   32   34   39   41   43   46   52   59 
LCS_GDT     Y      98     Y      98      8    9   25     4    8    8    8   11   16   23   23   24   26   26   29   32   34   39   44   45   49   56   59 
LCS_GDT     D      99     D      99      8    9   25     4    8    8   10   13   19   23   23   24   26   26   29   32   34   39   44   45   49   52   56 
LCS_GDT     I     100     I     100      7    8   25     4    6    7   10   13   19   23   23   24   26   26   29   31   34   39   44   45   49   52   52 
LCS_GDT     E     101     E     101      7    8   25     4    6    7    8    9   11   12   13   17   17   19   22   31   34   39   41   43   46   48   51 
LCS_GDT     A     102     A     102      7    8   25     4    6    7    8    9   11   12   16   19   22   26   29   32   34   39   41   43   46   48   51 
LCS_GDT     L     103     L     103      7    8   25     4    6    7    8    9   11   12   15   17   21   26   29   31   34   39   41   43   46   47   51 
LCS_GDT     W     104     W     104      7    8   25     3    6    7    8    9   11   12   13   17   17   19   22   23   27   33   35   37   43   46   49 
LCS_GDT     G     105     G     105      7    8   21     3    4    7    8    9   11   12   13   17   17   19   23   30   33   37   41   43   45   47   51 
LCS_GDT     G     106     G     106      4    8   20     3    4    4    6    8    9   11   12   13   15   17   21   28   34   39   41   43   46   48   51 
LCS_GDT     Q     107     Q     107      4    8   20     3    4    4    6    8    9   11   12   13   15   17   23   29   32   35   39   42   46   48   51 
LCS_GDT     K     108     K     108      4    8   20     3    4    4    6    7    8   10   12   13   14   17   17   25   26   27   29   30   32   37   48 
LCS_GDT     P     109     P     109      4    8   20     3    4    4    6    8    9   11   12   13   15   21   23   25   26   27   27   30   33   38   42 
LCS_GDT     S     110     S     110      4    8   20     3    4    4    6    8    9   11   12   13   15   21   23   25   26   27   27   30   33   38   45 
LCS_GDT     F     111     F     111      4    8   20     3    4    4    6    8    9   11   12   13   15   21   23   25   26   27   31   34   38   44   47 
LCS_GDT     A     112     A     112      4    8   20     1    4    4    6    8    9   11   12   13   15   21   23   25   26   29   34   35   38   44   47 
LCS_GDT     V     113     V     113      3    8   20     3    3    4    6    8    9   11   12   13   15   21   23   27   29   32   44   45   49   52   56 
LCS_GDT     G     114     G     114      4    7   20     3    4    4    5    7    9   11   12   13   15   21   23   25   29   32   35   40   49   52   56 
LCS_GDT     A     115     A     115      4    7   20     3    4    4    5    6    8    8    9   12   14   16   17   19   20   21   26   34   37   41   45 
LCS_GDT     A     116     A     116      4    7   20     3    4    4    5    7    8    8   10   13   14   16   17   22   25   30   35   40   44   52   56 
LCS_GDT     K     117     K     117      4    6   20     3    4    4    5    6    7    8    9   12   13   16   17   19   20   21   23   26   30   35   44 
LCS_GDT     P     118     P     118      3    6   20     3    3    3    4    6    7    8    9    9   10   11   12   13   18   20   23   23   24   24   39 
LCS_GDT     W     119     W     119      3    4   20     0    3    3    4    5    7    8    9   11   13   16   17   19   20   21   23   23   30   35   44 
LCS_GDT     S     120     S     120      3    4   20     0    3    3    4    4    6    8    9   12   14   16   17   19   20   21   30   33   45   54   62 
LCS_GDT     A     121     A     121      3    4   20     0    3    3    4    4    4    5    7    9   10   11   11   18   20   21   23   23   30   35   39 
LCS_GDT     V     122     V     122      3    4   12     0    0    3    3    3    4    4    5    5    5    6    7   10   11   11   11   26   30   35   39 
LCS_AVERAGE  LCS_A:  13.58  (   6.99   11.18   22.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     16     18     22     26     28     32     36     39     42     43     46     48     52     53     56     60     61     63     64 
GDT PERCENT_CA  10.66  13.11  14.75  18.03  21.31  22.95  26.23  29.51  31.97  34.43  35.25  37.70  39.34  42.62  43.44  45.90  49.18  50.00  51.64  52.46
GDT RMS_LOCAL    0.21   0.47   0.82   1.09   1.44   1.63   2.39   2.61   2.78   3.01   3.08   3.47   3.65   4.23   4.25   4.51   4.91   5.01   5.37   5.51
GDT RMS_ALL_CA  19.22  18.04  20.35  20.14  19.84  19.58  18.15  18.21  18.13  18.15  18.16  17.71  17.75  17.44  17.68  17.68  17.60  17.65  17.50  17.40

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          5.424
LGA    E       2      E       2          2.609
LGA    I       3      I       3          1.425
LGA    Q       4      Q       4          1.529
LGA    E       5      E       5          1.304
LGA    I       6      I       6          1.186
LGA    S       7      S       7          1.050
LGA    K       8      K       8          2.226
LGA    L       9      L       9          2.385
LGA    A      10      A      10          2.559
LGA    I      11      I      11          3.014
LGA    E      12      E      12          3.628
LGA    A      13      A      13          3.780
LGA    L      14      L      14          3.781
LGA    E      15      E      15          4.528
LGA    D      16      D      16          5.140
LGA    I      17      I      17          5.462
LGA    K      18      K      18          3.988
LGA    G      19      G      19          3.895
LGA    K      20      K      20         10.275
LGA    D      21      D      21         12.075
LGA    I      22      I      22          7.636
LGA    I      23      I      23          9.632
LGA    E      24      E      24         13.847
LGA    L      25      L      25         20.418
LGA    D      26      D      26         26.623
LGA    T      27      T      27         30.153
LGA    S      28      S      28         35.847
LGA    K      29      K      29         37.035
LGA    L      30      L      30         32.285
LGA    T      31      T      31         29.576
LGA    S      32      S      32         27.779
LGA    L      33      L      33         22.609
LGA    F      34      F      34         17.321
LGA    Q      35      Q      35         13.863
LGA    R      36      R      36          7.518
LGA    M      37      M      37          7.450
LGA    I      38      I      38          7.523
LGA    V      39      V      39          9.286
LGA    A      40      A      40         10.581
LGA    T      41      T      41          9.757
LGA    G      42      G      42         11.411
LGA    D      43      D      43          9.160
LGA    S      44      S      44          8.812
LGA    N      45      N      45          4.585
LGA    R      46      R      46          3.435
LGA    Q      47      Q      47          3.975
LGA    V      48      V      48          4.288
LGA    K      49      K      49          2.981
LGA    A      50      A      50          1.910
LGA    L      51      L      51          3.008
LGA    A      52      A      52          2.909
LGA    N      53      N      53          1.417
LGA    S      54      S      54          1.368
LGA    V      55      V      55          2.044
LGA    Q      56      Q      56          1.948
LGA    V      57      V      57          1.629
LGA    K      58      K      58          1.631
LGA    L      59      L      59          1.512
LGA    K      60      K      60          2.310
LGA    E      61      E      61          3.272
LGA    A      62      A      62          0.504
LGA    G      63      G      63          1.690
LGA    V      64      V      64          1.907
LGA    D      65      D      65          2.800
LGA    I      66      I      66          3.173
LGA    V      67      V      67          7.268
LGA    G      68      G      68          4.588
LGA    S      69      S      69          3.780
LGA    E      70      E      70          5.872
LGA    G      71      G      71          7.009
LGA    H      72      H      72         13.195
LGA    E      73      E      73         18.609
LGA    S      74      S      74         19.680
LGA    G      75      G      75         16.665
LGA    E      76      E      76         14.066
LGA    W      77      W      77         13.934
LGA    V      78      V      78         14.473
LGA    L      79      L      79         17.198
LGA    V      80      V      80         21.651
LGA    D      81      D      81         21.652
LGA    A      82      A      82         24.579
LGA    G      83      G      83         29.544
LGA    D      84      D      84         27.218
LGA    V      85      V      85         21.999
LGA    V      86      V      86         15.694
LGA    V      87      V      87         10.832
LGA    H      88      H      88          6.342
LGA    V      89      V      89          9.106
LGA    M      90      M      90          8.776
LGA    L      91      L      91         12.080
LGA    P      92      P      92         14.614
LGA    A      93      A      93         15.510
LGA    V      94      V      94         15.131
LGA    R      95      R      95         16.106
LGA    D      96      D      96         17.679
LGA    Y      97      Y      97         19.955
LGA    Y      98      Y      98         20.607
LGA    D      99      D      99         22.123
LGA    I     100      I     100         20.481
LGA    E     101      E     101         25.336
LGA    A     102      A     102         30.649
LGA    L     103      L     103         29.271
LGA    W     104      W     104         29.209
LGA    G     105      G     105         35.826
LGA    G     106      G     106         33.792
LGA    Q     107      Q     107         37.303
LGA    K     108      K     108         35.134
LGA    P     109      P     109         35.980
LGA    S     110      S     110         37.078
LGA    F     111      F     111         31.539
LGA    A     112      A     112         31.821
LGA    V     113      V     113         29.032
LGA    G     114      G     114         30.493
LGA    A     115      A     115         32.642
LGA    A     116      A     116         32.311
LGA    K     117      K     117         29.597
LGA    P     118      P     118         28.185
LGA    W     119      W     119         24.408
LGA    S     120      S     120         19.615
LGA    A     121      A     121         24.600
LGA    V     122      V     122         27.461

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     36    2.61    26.639    23.222     1.326

LGA_LOCAL      RMSD =  2.614  Number of atoms =   36  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.245  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 13.246  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.601123 * X  +  -0.762695 * Y  +  -0.238637 * Z  +  38.921799
  Y_new =  -0.477545 * X  +  -0.582252 * Y  +   0.657976 * Z  +  35.898819
  Z_new =  -0.640782 * X  +  -0.281565 * Y  +  -0.714227 * Z  +  29.096497 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.766076    0.375517  [ DEG:  -158.4845     21.5155 ]
  Theta =   0.695516    2.446076  [ DEG:    39.8501    140.1499 ]
  Phi   =  -0.671330    2.470263  [ DEG:   -38.4644    141.5356 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS393_1                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS393_1.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   36   2.61  23.222    13.25
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS393_1
PFRMAT TS
TARGET T0354
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      56.479  19.156  15.617  1.00 25.00           C
ATOM      2  CA  GLU     2      53.558  21.175  14.361  1.00 25.00           C
ATOM      3  CA  ILE     3      51.176  22.266  17.080  1.00 25.00           C
ATOM      4  CA  GLN     4      50.856  18.924  18.922  1.00 25.00           C
ATOM      5  CA  GLU     5      53.677  19.939  21.305  1.00 25.00           C
ATOM      6  CA  ILE     6      51.944  23.289  21.969  1.00 25.00           C
ATOM      7  CA  SER     7      48.651  21.471  22.690  1.00 25.00           C
ATOM      8  CA  LYS     8      50.455  19.113  25.109  1.00 25.00           C
ATOM      9  CA  LEU     9      52.047  22.111  26.882  1.00 25.00           C
ATOM     10  CA  ALA    10      48.617  23.788  27.181  1.00 25.00           C
ATOM     11  CA  ILE    11      47.143  20.567  28.638  1.00 25.00           C
ATOM     12  CA  GLU    12      50.011  20.370  31.167  1.00 25.00           C
ATOM     13  CA  ALA    13      49.416  24.019  32.166  1.00 25.00           C
ATOM     14  CA  LEU    14      45.681  23.310  32.623  1.00 25.00           C
ATOM     15  CA  GLU    15      46.499  20.268  34.800  1.00 25.00           C
ATOM     16  CA  ASP    16      48.877  22.393  36.920  1.00 25.00           C
ATOM     17  CA  ILE    17      49.012  26.123  37.816  1.00 25.00           C
ATOM     18  CA  LYS    18      46.068  28.123  39.307  1.00 25.00           C
ATOM     19  CA  GLY    19      43.819  27.811  36.206  1.00 25.00           C
ATOM     20  CA  LYS    20      46.309  28.663  33.419  1.00 25.00           C
ATOM     21  CA  ASP    21      45.950  27.602  29.805  1.00 25.00           C
ATOM     22  CA  ILE    22      43.349  26.997  27.088  1.00 25.00           C
ATOM     23  CA  ILE    23      40.797  28.717  29.367  1.00 25.00           C
ATOM     24  CA  GLU    24      39.812  29.534  32.943  1.00 25.00           C
ATOM     25  CA  LEU    25      40.715  31.729  35.963  1.00 25.00           C
ATOM     26  CA  ASP    26      38.359  33.619  38.298  1.00 25.00           C
ATOM     27  CA  THR    27      36.070  36.468  39.340  1.00 25.00           C
ATOM     28  CA  SER    28      33.093  36.811  41.607  1.00 25.00           C
ATOM     29  CA  LYS    29      33.530  33.224  42.667  1.00 25.00           C
ATOM     30  CA  LEU    30      35.179  30.234  40.987  1.00 25.00           C
ATOM     31  CA  THR    31      37.325  28.303  38.507  1.00 25.00           C
ATOM     32  CA  SER    32      37.214  25.642  35.860  1.00 25.00           C
ATOM     33  CA  LEU    33      35.733  24.412  32.531  1.00 25.00           C
ATOM     34  CA  PHE    34      37.260  22.249  29.764  1.00 25.00           C
ATOM     35  CA  GLN    35      40.502  22.702  27.742  1.00 25.00           C
ATOM     36  CA  ARG    36      39.671  24.015  24.301  1.00 25.00           C
ATOM     37  CA  MET    37      37.257  26.327  26.231  1.00 25.00           C
ATOM     38  CA  ILE    38      37.437  30.145  25.904  1.00 25.00           C
ATOM     39  CA  VAL    39      36.170  33.467  27.087  1.00 25.00           C
ATOM     40  CA  ALA    40      32.397  33.522  26.340  1.00 25.00           C
ATOM     41  CA  THR    41      30.677  34.619  29.549  1.00 25.00           C
ATOM     42  CA  GLY    42      27.981  36.983  30.820  1.00 25.00           C
ATOM     43  CA  ASP    43      29.520  37.600  34.179  1.00 25.00           C
ATOM     44  CA  SER    44      30.197  41.290  33.666  1.00 25.00           C
ATOM     45  CA  ASN    45      33.804  40.625  32.560  1.00 25.00           C
ATOM     46  CA  ARG    46      36.476  40.110  35.256  1.00 25.00           C
ATOM     47  CA  GLN    47      36.522  36.351  34.528  1.00 25.00           C
ATOM     48  CA  VAL    48      36.910  37.055  30.784  1.00 25.00           C
ATOM     49  CA  LYS    49      39.805  39.455  31.510  1.00 25.00           C
ATOM     50  CA  ALA    50      41.487  36.801  33.701  1.00 25.00           C
ATOM     51  CA  LEU    51      41.083  34.208  30.911  1.00 25.00           C
ATOM     52  CA  ALA    52      42.617  36.648  28.388  1.00 25.00           C
ATOM     53  CA  ASN    53      45.564  37.278  30.752  1.00 25.00           C
ATOM     54  CA  SER    54      46.082  33.505  31.152  1.00 25.00           C
ATOM     55  CA  VAL    55      46.031  33.069  27.348  1.00 25.00           C
ATOM     56  CA  GLN    56      48.605  35.879  26.967  1.00 25.00           C
ATOM     57  CA  VAL    57      50.838  34.223  29.602  1.00 25.00           C
ATOM     58  CA  LYS    58      50.563  30.874  27.766  1.00 25.00           C
ATOM     59  CA  LEU    59      51.502  32.577  24.467  1.00 25.00           C
ATOM     60  CA  LYS    60      54.526  34.220  26.147  1.00 25.00           C
ATOM     61  CA  GLU    61      55.612  30.830  27.560  1.00 25.00           C
ATOM     62  CA  ALA    62      57.425  30.604  24.204  1.00 25.00           C
ATOM     63  CA  GLY    63      55.600  32.362  21.291  1.00 25.00           C
ATOM     64  CA  VAL    64      52.245  32.754  19.523  1.00 25.00           C
ATOM     65  CA  ASP    65      52.173  36.433  20.496  1.00 25.00           C
ATOM     66  CA  ILE    66      48.536  36.327  21.531  1.00 25.00           C
ATOM     67  CA  VAL    67      45.185  35.449  23.138  1.00 25.00           C
ATOM     68  CA  GLY    68      41.605  35.345  21.901  1.00 25.00           C
ATOM     69  CA  SER    69      38.692  35.478  19.432  1.00 25.00           C
ATOM     70  CA  GLU    70      35.689  34.625  17.176  1.00 25.00           C
ATOM     71  CA  GLY    71      33.933  33.057  20.209  1.00 25.00           C
ATOM     72  CA  HIS    72      33.035  29.410  19.547  1.00 25.00           C
ATOM     73  CA  GLU    73      29.789  27.758  18.320  1.00 25.00           C
ATOM     74  CA  SER    74      30.281  24.198  19.564  1.00 25.00           C
ATOM     75  CA  GLY    75      33.427  23.756  21.670  1.00 25.00           C
ATOM     76  CA  GLU    76      31.483  22.260  24.539  1.00 25.00           C
ATOM     77  CA  TRP    77      31.369  19.941  27.501  1.00 25.00           C
ATOM     78  CA  VAL    78      29.545  22.509  29.610  1.00 25.00           C
ATOM     79  CA  LEU    79      26.978  23.893  32.001  1.00 25.00           C
ATOM     80  CA  VAL    80      24.916  26.385  34.076  1.00 25.00           C
ATOM     81  CA  ASP    81      25.892  29.451  31.983  1.00 25.00           C
ATOM     82  CA  ALA    82      27.804  31.223  34.754  1.00 25.00           C
ATOM     83  CA  GLY    83      28.741  31.799  38.424  1.00 25.00           C
ATOM     84  CA  ASP    84      32.282  32.174  37.066  1.00 25.00           C
ATOM     85  CA  VAL    85      32.748  28.582  35.997  1.00 25.00           C
ATOM     86  CA  VAL    86      32.755  28.769  32.147  1.00 25.00           C
ATOM     87  CA  VAL    87      31.735  27.145  28.870  1.00 25.00           C
ATOM     88  CA  HIS    88      31.366  27.415  25.089  1.00 25.00           C
ATOM     89  CA  VAL    89      28.575  30.070  25.256  1.00 25.00           C
ATOM     90  CA  MET    90      28.078  33.218  23.166  1.00 25.00           C
ATOM     91  CA  LEU    91      26.764  36.765  22.984  1.00 25.00           C
ATOM     92  CA  PRO    92      29.876  38.703  23.948  1.00 25.00           C
ATOM     93  CA  ALA    93      32.698  37.812  21.518  1.00 25.00           C
ATOM     94  CA  VAL    94      33.483  41.528  21.029  1.00 25.00           C
ATOM     95  CA  ARG    95      33.574  42.033  24.824  1.00 25.00           C
ATOM     96  CA  ASP    96      35.943  39.047  25.189  1.00 25.00           C
ATOM     97  CA  TYR    97      38.215  40.483  22.461  1.00 25.00           C
ATOM     98  CA  TYR    98      38.244  43.877  24.238  1.00 25.00           C
ATOM     99  CA  ASP    99      39.148  42.166  27.543  1.00 25.00           C
ATOM    100  CA  ILE   100      41.992  40.271  25.814  1.00 25.00           C
ATOM    101  CA  GLU   101      43.286  43.545  24.304  1.00 25.00           C
ATOM    102  CA  ALA   102      43.179  45.207  27.753  1.00 25.00           C
ATOM    103  CA  LEU   103      45.108  42.261  29.259  1.00 25.00           C
ATOM    104  CA  TRP   104      47.732  42.527  26.482  1.00 25.00           C
ATOM    105  CA  GLY   105      49.789  45.111  28.342  1.00 25.00           C
ATOM    106  CA  GLY   106      50.158  43.868  31.894  1.00 25.00           C
ATOM    107  CA  GLN   107      51.145  44.983  35.404  1.00 25.00           C
ATOM    108  CA  LYS   108      49.383  45.785  38.646  1.00 25.00           C
ATOM    109  CA  PRO   109      47.933  48.598  40.842  1.00 25.00           C
ATOM    110  CA  SER   110      44.741  50.564  40.277  1.00 25.00           C
ATOM    111  CA  PHE   111      41.320  48.897  40.805  1.00 25.00           C
ATOM    112  CA  ALA   112      37.824  49.299  42.352  1.00 25.00           C
ATOM    113  CA  VAL   113      34.758  51.479  42.079  1.00 25.00           C
ATOM    114  CA  GLY   114      33.312  54.569  43.824  1.00 25.00           C
ATOM    115  CA  ALA   115      31.587  57.906  43.485  1.00 25.00           C
ATOM    116  CA  ALA   116      30.077  59.646  40.481  1.00 25.00           C
ATOM    117  CA  LYS   117      26.617  61.175  41.021  1.00 25.00           C
ATOM    118  CA  PRO   118      24.065  59.103  39.043  1.00 25.00           C
ATOM    119  CA  TRP   119      24.811  58.618  35.319  1.00 25.00           C
ATOM    120  CA  SER   120      22.624  57.511  32.405  1.00 25.00           C
ATOM    121  CA  ALA   121      23.132  61.105  31.214  1.00 25.00           C
ATOM    122  CA  VAL   122      22.827  59.604  27.669  1.00 25.00           C
ATOM    123  CA  LEU   123      26.621  59.464  27.251  1.00 25.00           C
ATOM    124  CA  GLU   124      26.903  63.234  26.645  1.00 25.00           C
ATOM    125  CA  HIS   125      25.371  62.814  23.161  1.00 25.00           C
ATOM    126  CA  HIS   126      24.970  59.066  22.527  1.00 25.00           C
ATOM    127  CA  HIS   127      27.608  59.563  19.831  1.00 25.00           C
ATOM    128  CA  HIS   128      29.405  58.913  16.543  1.00 25.00           C
ATOM    129  CA  HIS   129      33.107  58.761  15.823  1.00 25.00           C
ATOM    130  CA  HIS   130      33.740  55.420  17.562  1.00 25.00           C
TER
END
