
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS393_2
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS393_2.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        31 - 71          4.99    20.57
  LCS_AVERAGE:     26.51

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        44 - 70          1.95    20.74
  LCS_AVERAGE:     12.03

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        44 - 65          0.94    19.92
  LONGEST_CONTINUOUS_SEGMENT:    22        45 - 66          0.95    20.01
  LCS_AVERAGE:      8.29

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      3   20   32     3    3    5    9   14   16   20   25   27   30   32   34   40   46   49   52   59   60   64   67 
LCS_GDT     E       2     E       2     18   20   32    11   15   17   18   18   19   26   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     I       3     I       3     18   20   32     7   15   17   19   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     Q       4     Q       4     18   20   32    13   15   17   18   22   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     E       5     E       5     18   20   32    13   15   17   18   18   19   26   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     I       6     I       6     18   20   32    13   15   17   18   18   20   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     S       7     S       7     18   20   32    13   15   17   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     K       8     K       8     18   20   32    13   15   17   18   18   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     L       9     L       9     18   20   32    13   15   17   18   18   19   26   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     A      10     A      10     18   20   32    13   15   17   18   18   21   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     I      11     I      11     18   20   32    13   15   17   18   21   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     E      12     E      12     18   20   32    13   15   17   18   18   21   26   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     A      13     A      13     18   20   32    13   15   17   18   18   21   26   31   36   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     L      14     L      14     18   20   32    13   15   17   18   18   21   26   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     E      15     E      15     18   20   32    13   15   17   18   18   25   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     D      16     D      16     18   20   32    13   15   17   18   18   21   26   31   36   38   43   46   47   50   52   55   58   59   62   67 
LCS_GDT     I      17     I      17     18   20   32     3   15   17   18   18   19   26   30   36   38   42   46   47   50   52   55   58   59   62   67 
LCS_GDT     K      18     K      18     18   20   32     3   11   17   18   18   19   21   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     G      19     G      19     18   20   32     0   14   17   18   18   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     K      20     K      20      3   20   32     3    4    4    9   16   19   21   28   33   39   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     D      21     D      21      3   20   32     3    3    3    7    9   17   21   25   27   30   32   34   36   48   50   55   59   60   64   67 
LCS_GDT     I      22     I      22      4   10   32     3    4    5    8    9   13   14   16   27   30   36   41   46   50   53   55   59   60   64   67 
LCS_GDT     I      23     I      23      4   10   32     3    4    5    7    9   17   21   25   27   30   32   40   46   50   52   55   59   60   64   67 
LCS_GDT     E      24     E      24      4   10   32     3    4    5    7    9   12   16   25   27   30   32   32   33   43   49   55   58   59   62   67 
LCS_GDT     L      25     L      25      4   10   32     3    6    7    9   11   14   16   25   27   30   32   32   33   39   49   51   55   58   61   65 
LCS_GDT     D      26     D      26      4   10   32     3    3    4    7    9   12   17   25   27   30   32   32   33   39   49   51   55   58   62   65 
LCS_GDT     T      27     T      27      4   10   32     0    4    4    7    9   19   21   25   27   30   32   32   38   44   49   55   58   59   62   66 
LCS_GDT     S      28     S      28      4   10   32     3    4    5    7   13   19   21   25   27   30   32   32   38   43   49   51   55   58   62   66 
LCS_GDT     K      29     K      29      4   10   32     3    4    5    8   16   19   21   25   27   30   32   32   38   43   49   51   55   58   62   66 
LCS_GDT     L      30     L      30      4   10   32     3    4    5    6    9   15   19   24   27   31   35   40   45   48   52   55   58   59   62   66 
LCS_GDT     T      31     T      31      4    5   41     3    3    5    5    6    8   12   16   17   18   33   38   45   48   52   55   58   59   63   67 
LCS_GDT     S      32     S      32      4    5   41     3    3    5    5    5    7   13   14   15   25   26   29   40   48   50   54   55   60   64   67 
LCS_GDT     L      33     L      33      4    5   41     2    3    5    5    6   11   17   22   22   25   27   33   37   41   45   47   54   60   64   67 
LCS_GDT     F      34     F      34      4    6   41     3    3    4    6    9    9   11   13   16   25   26   33   36   41   45   47   49   52   58   67 
LCS_GDT     Q      35     Q      35      5    6   41     3    4    5    7   11   11   17   22   22   25   30   35   37   41   45   47   49   57   64   67 
LCS_GDT     R      36     R      36      5    7   41     3    4    5    7   11   14   22   27   27   31   42   43   46   50   53   55   59   60   64   67 
LCS_GDT     M      37     M      37      5    7   41     3    4    5    7   11   14   22   27   28   38   42   44   47   50   53   55   59   60   64   67 
LCS_GDT     I      38     I      38      5    7   41     3    4    5    9   11   17   23   28   30   35   41   44   47   50   53   55   59   60   64   67 
LCS_GDT     V      39     V      39      5    7   41     3    4    7    9   15   22   26   28   30   34   39   42   46   50   53   55   59   60   64   67 
LCS_GDT     A      40     A      40      3    7   41     3    3    5    7   15   17   26   28   30   34   39   42   46   50   53   55   59   60   64   67 
LCS_GDT     T      41     T      41      3    7   41     3    4    5   12   20   23   26   28   29   34   36   38   42   46   53   54   59   60   64   67 
LCS_GDT     G      42     G      42      3   20   41     3    4    5    5    6   10   12   23   28   30   35   37   41   45   49   52   59   60   64   67 
LCS_GDT     D      43     D      43      3   24   41     1    4    8   14   20   23   26   28   30   34   36   40   44   47   53   54   59   60   64   67 
LCS_GDT     S      44     S      44     22   27   41     0    8   15   22   24   27   31   38   40   42   43   46   47   49   53   55   59   60   64   67 
LCS_GDT     N      45     N      45     22   27   41    11   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     R      46     R      46     22   27   41    11   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     Q      47     Q      47     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     V      48     V      48     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     K      49     K      49     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     A      50     A      50     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     L      51     L      51     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     A      52     A      52     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     N      53     N      53     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     S      54     S      54     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     V      55     V      55     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     Q      56     Q      56     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     V      57     V      57     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     K      58     K      58     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     L      59     L      59     22   27   41     6   16   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     K      60     K      60     22   27   41    12   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     E      61     E      61     22   27   41    11   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     A      62     A      62     22   27   41     3    3    8   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     G      63     G      63     22   27   41     3   15   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     V      64     V      64     22   27   41    11   17   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     D      65     D      65     22   27   41     3   16   20   22   24   27   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     I      66     I      66     22   27   41     3    4   11   22   23   26   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     V      67     V      67      5   27   41     2    4    6    8    9   14   26   30   33   38   42   46   47   50   53   55   59   60   64   67 
LCS_GDT     G      68     G      68      5   27   41     3    4    7   21   23   25   31   39   40   42   43   46   47   50   53   55   59   60   64   67 
LCS_GDT     S      69     S      69      5   27   41     3    4    5   15   23   25   26   39   40   42   43   46   47   49   53   55   59   60   64   67 
LCS_GDT     E      70     E      70      5   27   41     3    4    5   20   22   25   26   34   40   42   43   46   46   49   53   54   59   60   64   67 
LCS_GDT     G      71     G      71      5    9   41     3    4    5   10   14   20   25   28   31   41   42   44   46   47   50   52   59   60   64   67 
LCS_GDT     H      72     H      72      4    7   39     3    4    6    7    9   11   13   17   19   22   27   29   31   35   39   43   48   54   56   62 
LCS_GDT     E      73     E      73      4    7   34     3    4    8   10   13   13   14   17   19   22   27   29   31   34   37   40   46   48   51   51 
LCS_GDT     S      74     S      74      4    7   33     3    4    5    6    7    9   11   13   18   22   27   29   32   34   39   41   46   48   51   51 
LCS_GDT     G      75     G      75      4    7   33     3    4    5    8    9   10   14   19   23   26   30   31   36   37   41   43   47   48   51   52 
LCS_GDT     E      76     E      76      4    7   33     3    4    5    6    9   13   17   21   24   28   31   34   36   41   45   48   48   49   51   59 
LCS_GDT     W      77     W      77      4    7   31     3    4    5    5    7    9   12   14   21   26   30   32   36   40   45   48   48   49   56   59 
LCS_GDT     V      78     V      78      4    7   28     1    3    5    5    7    9   11   11   13   15   16   23   29   33   37   41   46   50   51   61 
LCS_GDT     L      79     L      79      4    7   27     3    5    5    6    8   10   12   15   15   17   18   18   24   25   29   36   44   46   49   51 
LCS_GDT     V      80     V      80      4    7   28     3    5    5    6    7    9   12   13   14   17   24   27   31   34   37   40   44   46   49   51 
LCS_GDT     D      81     D      81      4    8   28     3    5    5    7   11   11   13   17   20   24   26   29   31   34   37   40   44   46   49   51 
LCS_GDT     A      82     A      82      7    9   28     4    6    7    9   11   14   15   18   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     G      83     G      83      7    9   28     2    6    7    9   11   14   15   18   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     D      84     D      84      7    9   28     3    6    7    9   11   14   15   18   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     V      85     V      85      7    9   28     4    6    7    9   11   14   15   18   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     V      86     V      86      7    9   28     4    6    7    9   11   14   15   18   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     V      87     V      87      7    9   28     4    6    7    9   11   14   15   18   21   24   27   29   31   41   45   47   48   57   64   67 
LCS_GDT     H      88     H      88      7    9   28     4    6    7    9   11   12   14   18   21   24   30   35   42   49   53   55   59   60   64   67 
LCS_GDT     V      89     V      89      4    9   28     3    4    5    9   11   14   15   18   21   24   27   29   36   41   45   47   55   59   64   67 
LCS_GDT     M      90     M      90      4    9   28     3    4    7    9   11   14   15   18   21   24   36   38   42   46   49   54   59   60   64   67 
LCS_GDT     L      91     L      91      3    9   28     3    3    5    7   11   12   15   18   28   29   35   37   41   45   49   52   56   60   63   67 
LCS_GDT     P      92     P      92      8    9   28     6    8    8    8   11   11   13   17   21   24   27   31   37   39   42   44   51   53   61   66 
LCS_GDT     A      93     A      93      8    9   28     6    8    8    8    9    9   11   15   21   24   27   29   30   33   37   47   51   56   60   66 
LCS_GDT     V      94     V      94      8    9   28     6    8    8   10   13   13   14   18   21   24   27   29   32   38   42   47   52   58   62   66 
LCS_GDT     R      95     R      95      8    9   28     6    8    8    8   10   14   15   18   21   24   27   31   35   39   46   51   54   58   62   66 
LCS_GDT     D      96     D      96      8    9   28     6    8    8    8   16   18   21   21   22   24   27   29   30   39   46   50   55   58   62   66 
LCS_GDT     Y      97     Y      97      8    9   28     6    8    8   10   12   13   21   21   22   24   26   29   31   34   37   40   46   56   61   65 
LCS_GDT     Y      98     Y      98      8   10   28     4    8    8   18   18   19   21   21   23   24   29   31   33   39   46   51   55   58   62   65 
LCS_GDT     D      99     D      99      8   10   28     4    8    8    8   10   14   18   25   27   30   32   32   33   37   45   47   51   58   58   63 
LCS_GDT     I     100     I     100      7   10   28     4    7    8   10   16   19   21   25   27   30   32   32   33   39   45   47   55   58   60   63 
LCS_GDT     E     101     E     101      7   10   28     5    7    8   10   13   13   14   17   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     A     102     A     102      7   10   28     5    7    8   10   13   13   14   17   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     L     103     L     103      7   10   28     5    7    8   10   13   14   15   18   21   24   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     W     104     W     104      7   10   28     5    7    8   10   13   13   14   17   21   24   27   29   30   34   37   40   44   46   49   51 
LCS_GDT     G     105     G     105      7   10   28     5    7    8   10   13   13   14   17   19   22   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     G     106     G     106      5   10   28     3    4    5   10   13   13   14   15   18   20   24   28   30   34   37   40   44   46   49   51 
LCS_GDT     Q     107     Q     107      5   10   28     3    4    5   10   13   13   14   14   17   20   27   29   30   34   37   40   44   46   49   51 
LCS_GDT     K     108     K     108      5    9   21     3    4    5    6    6    9   11   13   16   17   18   21   25   28   31   35   39   45   49   51 
LCS_GDT     P     109     P     109      4    9   20     3    4    7    8    8   11   13   14   15   17   18   20   24   26   31   34   42   45   49   51 
LCS_GDT     S     110     S     110      4    9   20     3    4    7    8    8   11   13   17   19   22   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     F     111     F     111      5    9   20     2    4    5    8    8   11   13   17   19   22   27   29   31   34   37   40   44   46   49   51 
LCS_GDT     A     112     A     112      5    9   20     3    5    7    8    8   11   12   17   19   22   27   29   31   34   36   40   44   46   49   51 
LCS_GDT     V     113     V     113      5    9   20     3    5    7    8    8   11   13   17   19   22   27   29   31   34   36   40   44   46   49   51 
LCS_GDT     G     114     G     114      5    9   19     3    5    7    8    8    9    9   11   13   16   19   24   28   33   35   38   39   42   46   50 
LCS_GDT     A     115     A     115      5    9   18     3    5    7    8    8    9    9   10   11   13   14   15   18   20   27   31   36   39   42   45 
LCS_GDT     A     116     A     116      5    9   16     3    5    7    8    8    9    9   10   11   13   14   15   16   16   20   24   28   38   42   45 
LCS_GDT     K     117     K     117      3    9   16     3    3    5    7    7    9    9   10   11   13   14   15   16   16   17   23   24   27   28   30 
LCS_GDT     P     118     P     118      3    5   16     3    3    3    4    5    7    7    9    9   10   11   11   12   13   15   16   19   24   25   27 
LCS_GDT     W     119     W     119      4    5   16     3    4    4    5    6    7    9   10   11   13   14   14   15   16   16   16   19   24   25   27 
LCS_GDT     S     120     S     120      4    5   16     2    4    4    4    6    7    9   10   11   13   14   14   15   16   16   16   17   23   25   27 
LCS_GDT     A     121     A     121      4    5   16     1    4    4    4    4    4    5    5    5    9   10   11   12   16   16   16   17   24   25   27 
LCS_GDT     V     122     V     122      4    5    9     2    4    4    4    4    4    5    5    5    5    6    7    7    7    7    7    9    9   10   10 
LCS_AVERAGE  LCS_A:  15.61  (   8.29   12.03   26.51 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     20     22     24     27     31     39     40     42     43     46     47     50     53     55     59     60     64     67 
GDT PERCENT_CA  10.66  13.93  16.39  18.03  19.67  22.13  25.41  31.97  32.79  34.43  35.25  37.70  38.52  40.98  43.44  45.08  48.36  49.18  52.46  54.92
GDT RMS_LOCAL    0.21   0.54   0.71   0.94   1.19   1.63   2.14   2.84   2.86   3.00   3.08   3.35   3.59   4.30   4.53   4.74   5.28   5.52   5.94   6.02
GDT RMS_ALL_CA  19.88  19.93  19.99  19.92  19.86  19.86  20.04  20.58  20.49  20.62  20.65  20.81  20.75  20.56  20.34  20.62  20.29  20.47  20.60  20.37

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         10.430
LGA    E       2      E       2          3.779
LGA    I       3      I       3          1.482
LGA    Q       4      Q       4          2.963
LGA    E       5      E       5          3.802
LGA    I       6      I       6          3.060
LGA    S       7      S       7          1.371
LGA    K       8      K       8          2.698
LGA    L       9      L       9          3.801
LGA    A      10      A      10          3.254
LGA    I      11      I      11          1.832
LGA    E      12      E      12          3.559
LGA    A      13      A      13          4.764
LGA    L      14      L      14          3.655
LGA    E      15      E      15          2.709
LGA    D      16      D      16          5.066
LGA    I      17      I      17          5.790
LGA    K      18      K      18          3.870
LGA    G      19      G      19          2.006
LGA    K      20      K      20          5.578
LGA    D      21      D      21         11.848
LGA    I      22      I      22         11.003
LGA    I      23      I      23         11.060
LGA    E      24      E      24         12.151
LGA    L      25      L      25         14.991
LGA    D      26      D      26         15.308
LGA    T      27      T      27         12.914
LGA    S      28      S      28         14.378
LGA    K      29      K      29         15.561
LGA    L      30      L      30         12.923
LGA    T      31      T      31         11.533
LGA    S      32      S      32         11.931
LGA    L      33      L      33         13.481
LGA    F      34      F      34         14.787
LGA    Q      35      Q      35         14.644
LGA    R      36      R      36          8.938
LGA    M      37      M      37          8.416
LGA    I      38      I      38          7.686
LGA    V      39      V      39          9.178
LGA    A      40      A      40          9.248
LGA    T      41      T      41         11.718
LGA    G      42      G      42         13.044
LGA    D      43      D      43         10.682
LGA    S      44      S      44          4.735
LGA    N      45      N      45          3.583
LGA    R      46      R      46          3.840
LGA    Q      47      Q      47          3.599
LGA    V      48      V      48          2.972
LGA    K      49      K      49          2.791
LGA    A      50      A      50          2.840
LGA    L      51      L      51          2.654
LGA    A      52      A      52          2.364
LGA    N      53      N      53          2.319
LGA    S      54      S      54          2.420
LGA    V      55      V      55          2.305
LGA    Q      56      Q      56          2.405
LGA    V      57      V      57          1.999
LGA    K      58      K      58          1.621
LGA    L      59      L      59          2.341
LGA    K      60      K      60          2.712
LGA    E      61      E      61          2.072
LGA    A      62      A      62          3.053
LGA    G      63      G      63          2.666
LGA    V      64      V      64          1.726
LGA    D      65      D      65          2.500
LGA    I      66      I      66          3.473
LGA    V      67      V      67          5.915
LGA    G      68      G      68          2.977
LGA    S      69      S      69          3.681
LGA    E      70      E      70          4.712
LGA    G      71      G      71          7.923
LGA    H      72      H      72         14.094
LGA    E      73      E      73         18.654
LGA    S      74      S      74         19.295
LGA    G      75      G      75         15.062
LGA    E      76      E      76         13.574
LGA    W      77      W      77         12.461
LGA    V      78      V      78         12.957
LGA    L      79      L      79         14.717
LGA    V      80      V      80         18.874
LGA    D      81      D      81         21.724
LGA    A      82      A      82         24.549
LGA    G      83      G      83         28.349
LGA    D      84      D      84         26.156
LGA    V      85      V      85         18.937
LGA    V      86      V      86         16.261
LGA    V      87      V      87         12.060
LGA    H      88      H      88          8.634
LGA    V      89      V      89         11.469
LGA    M      90      M      90         10.764
LGA    L      91      L      91         13.305
LGA    P      92      P      92         18.447
LGA    A      93      A      93         17.029
LGA    V      94      V      94         17.171
LGA    R      95      R      95         18.930
LGA    D      96      D      96         19.311
LGA    Y      97      Y      97         20.376
LGA    Y      98      Y      98         21.722
LGA    D      99      D      99         23.495
LGA    I     100      I     100         20.715
LGA    E     101      E     101         24.981
LGA    A     102      A     102         31.168
LGA    L     103      L     103         29.741
LGA    W     104      W     104         28.708
LGA    G     105      G     105         34.905
LGA    G     106      G     106         32.383
LGA    Q     107      Q     107         37.072
LGA    K     108      K     108         36.459
LGA    P     109      P     109         38.404
LGA    S     110      S     110         38.999
LGA    F     111      F     111         36.768
LGA    A     112      A     112         39.913
LGA    V     113      V     113         42.000
LGA    G     114      G     114         44.626
LGA    A     115      A     115         45.021
LGA    A     116      A     116         48.639
LGA    K     117      K     117         49.653
LGA    P     118      P     118         49.462
LGA    W     119      W     119         48.804
LGA    S     120      S     120         52.794
LGA    A     121      A     121         56.082
LGA    V     122      V     122         59.313

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     39    2.84    27.254    23.489     1.329

LGA_LOCAL      RMSD =  2.835  Number of atoms =   39  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.811  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 16.608  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.573165 * X  +  -0.818940 * Y  +   0.028634 * Z  +  43.703987
  Y_new =  -0.114173 * X  +  -0.045207 * Y  +   0.992432 * Z  +  32.015717
  Z_new =  -0.811447 * X  +  -0.572096 * Y  +  -0.119412 * Z  +  22.269634 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.776569    1.365024  [ DEG:  -101.7899     78.2101 ]
  Theta =   0.946624    2.194968  [ DEG:    54.2376    125.7624 ]
  Phi   =  -0.196623    2.944969  [ DEG:   -11.2657    168.7343 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS393_2                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS393_2.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   39   2.84  23.489    16.61
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS393_2
PFRMAT TS
TARGET T0354
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      51.846  14.681  16.173  1.00 25.00           C
ATOM      2  CA  GLU     2      52.859  18.227  15.119  1.00 25.00           C
ATOM      3  CA  ILE     3      50.433  21.067  15.853  1.00 25.00           C
ATOM      4  CA  GLN     4      48.427  18.583  17.968  1.00 25.00           C
ATOM      5  CA  GLU     5      51.527  17.855  20.096  1.00 25.00           C
ATOM      6  CA  ILE     6      52.098  21.609  20.593  1.00 25.00           C
ATOM      7  CA  SER     7      48.442  22.052  21.644  1.00 25.00           C
ATOM      8  CA  LYS     8      48.783  19.162  24.135  1.00 25.00           C
ATOM      9  CA  LEU     9      51.963  20.741  25.570  1.00 25.00           C
ATOM     10  CA  ALA    10      50.160  24.100  25.933  1.00 25.00           C
ATOM     11  CA  ILE    11      47.249  22.373  27.724  1.00 25.00           C
ATOM     12  CA  GLU    12      49.704  20.631  30.090  1.00 25.00           C
ATOM     13  CA  ALA    13      51.406  23.981  30.829  1.00 25.00           C
ATOM     14  CA  LEU    14      48.000  25.577  31.558  1.00 25.00           C
ATOM     15  CA  GLU    15      47.125  22.690  33.916  1.00 25.00           C
ATOM     16  CA  ASP    16      50.476  23.115  35.721  1.00 25.00           C
ATOM     17  CA  ILE    17      49.781  26.803  36.347  1.00 25.00           C
ATOM     18  CA  LYS    18      46.033  26.959  36.519  1.00 25.00           C
ATOM     19  CA  GLY    19      42.723  25.763  34.967  1.00 25.00           C
ATOM     20  CA  LYS    20      41.241  26.489  38.424  1.00 25.00           C
ATOM     21  CA  ASP    21      42.125  30.130  37.546  1.00 25.00           C
ATOM     22  CA  ILE    22      39.056  31.264  35.659  1.00 25.00           C
ATOM     23  CA  ILE    23      39.983  29.237  32.507  1.00 25.00           C
ATOM     24  CA  GLU    24      42.684  29.478  29.796  1.00 25.00           C
ATOM     25  CA  LEU    25      40.913  31.552  27.226  1.00 25.00           C
ATOM     26  CA  ASP    26      40.171  31.171  23.470  1.00 25.00           C
ATOM     27  CA  THR    27      41.075  30.794  19.796  1.00 25.00           C
ATOM     28  CA  SER    28      41.737  31.796  16.186  1.00 25.00           C
ATOM     29  CA  LYS    29      38.942  31.210  13.761  1.00 25.00           C
ATOM     30  CA  LEU    30      36.233  30.175  16.194  1.00 25.00           C
ATOM     31  CA  THR    31      35.544  27.904  19.201  1.00 25.00           C
ATOM     32  CA  SER    32      37.316  24.571  19.802  1.00 25.00           C
ATOM     33  CA  LEU    33      36.157  22.147  22.575  1.00 25.00           C
ATOM     34  CA  PHE    34      35.742  21.827  26.351  1.00 25.00           C
ATOM     35  CA  GLN    35      39.055  21.719  28.223  1.00 25.00           C
ATOM     36  CA  ARG    36      39.955  24.545  25.875  1.00 25.00           C
ATOM     37  CA  MET    37      37.263  26.974  27.074  1.00 25.00           C
ATOM     38  CA  ILE    38      35.190  29.115  24.734  1.00 25.00           C
ATOM     39  CA  VAL    39      34.831  32.890  24.266  1.00 25.00           C
ATOM     40  CA  ALA    40      34.451  33.571  28.037  1.00 25.00           C
ATOM     41  CA  THR    41      32.118  36.450  27.036  1.00 25.00           C
ATOM     42  CA  GLY    42      29.854  39.276  28.236  1.00 25.00           C
ATOM     43  CA  ASP    43      28.694  36.800  30.935  1.00 25.00           C
ATOM     44  CA  SER    44      31.220  35.661  33.542  1.00 25.00           C
ATOM     45  CA  ASN    45      32.662  39.145  32.989  1.00 25.00           C
ATOM     46  CA  ARG    46      35.512  40.152  35.340  1.00 25.00           C
ATOM     47  CA  GLN    47      36.492  36.474  35.766  1.00 25.00           C
ATOM     48  CA  VAL    48      36.490  36.007  31.965  1.00 25.00           C
ATOM     49  CA  LYS    49      38.697  39.110  31.557  1.00 25.00           C
ATOM     50  CA  ALA    50      41.121  37.762  34.198  1.00 25.00           C
ATOM     51  CA  LEU    51      41.258  34.390  32.386  1.00 25.00           C
ATOM     52  CA  ALA    52      41.974  36.172  29.074  1.00 25.00           C
ATOM     53  CA  ASN    53      44.775  38.188  30.734  1.00 25.00           C
ATOM     54  CA  SER    54      46.274  34.968  32.169  1.00 25.00           C
ATOM     55  CA  VAL    55      46.140  33.334  28.708  1.00 25.00           C
ATOM     56  CA  GLN    56      47.875  36.383  27.174  1.00 25.00           C
ATOM     57  CA  VAL    57      50.594  36.221  29.866  1.00 25.00           C
ATOM     58  CA  LYS    58      51.102  32.491  29.164  1.00 25.00           C
ATOM     59  CA  LEU    59      51.394  33.211  25.413  1.00 25.00           C
ATOM     60  CA  LYS    60      53.972  35.954  26.117  1.00 25.00           C
ATOM     61  CA  GLU    61      55.971  33.544  28.320  1.00 25.00           C
ATOM     62  CA  ALA    62      58.379  30.896  27.116  1.00 25.00           C
ATOM     63  CA  GLY    63      57.060  31.407  23.630  1.00 25.00           C
ATOM     64  CA  VAL    64      54.114  32.133  21.357  1.00 25.00           C
ATOM     65  CA  ASP    65      52.043  35.228  20.765  1.00 25.00           C
ATOM     66  CA  ILE    66      48.477  35.700  22.121  1.00 25.00           C
ATOM     67  CA  VAL    67      44.734  34.979  21.671  1.00 25.00           C
ATOM     68  CA  GLY    68      41.584  35.841  19.722  1.00 25.00           C
ATOM     69  CA  SER    69      38.116  35.620  21.338  1.00 25.00           C
ATOM     70  CA  GLU    70      35.279  34.932  18.888  1.00 25.00           C
ATOM     71  CA  GLY    71      32.333  32.748  19.785  1.00 25.00           C
ATOM     72  CA  HIS    72      28.618  31.823  19.339  1.00 25.00           C
ATOM     73  CA  GLU    73      29.178  29.306  16.552  1.00 25.00           C
ATOM     74  CA  SER    74      27.679  26.249  18.255  1.00 25.00           C
ATOM     75  CA  GLY    75      30.286  26.983  20.998  1.00 25.00           C
ATOM     76  CA  GLU    76      28.497  24.112  22.749  1.00 25.00           C
ATOM     77  CA  TRP    77      31.267  21.754  23.801  1.00 25.00           C
ATOM     78  CA  VAL    78      30.721  23.100  27.302  1.00 25.00           C
ATOM     79  CA  LEU    79      30.607  23.612  31.057  1.00 25.00           C
ATOM     80  CA  VAL    80      30.035  24.862  34.580  1.00 25.00           C
ATOM     81  CA  ASP    81      27.432  27.336  33.293  1.00 25.00           C
ATOM     82  CA  ALA    82      28.876  29.723  35.838  1.00 25.00           C
ATOM     83  CA  GLY    83      31.037  31.305  38.607  1.00 25.00           C
ATOM     84  CA  ASP    84      33.931  29.207  37.345  1.00 25.00           C
ATOM     85  CA  VAL    85      34.856  28.781  33.641  1.00 25.00           C
ATOM     86  CA  VAL    86      32.014  30.745  31.952  1.00 25.00           C
ATOM     87  CA  VAL    87      30.456  30.380  28.537  1.00 25.00           C
ATOM     88  CA  HIS    88      29.721  32.276  25.289  1.00 25.00           C
ATOM     89  CA  VAL    89      27.344  35.181  25.636  1.00 25.00           C
ATOM     90  CA  MET    90      28.351  36.438  22.209  1.00 25.00           C
ATOM     91  CA  LEU    91      27.279  39.839  23.579  1.00 25.00           C
ATOM     92  CA  PRO    92      29.982  41.857  21.752  1.00 25.00           C
ATOM     93  CA  ALA    93      32.654  39.352  20.636  1.00 25.00           C
ATOM     94  CA  VAL    94      34.741  42.200  19.153  1.00 25.00           C
ATOM     95  CA  ARG    95      34.425  44.167  22.424  1.00 25.00           C
ATOM     96  CA  ASP    96      35.532  41.085  24.412  1.00 25.00           C
ATOM     97  CA  TYR    97      38.545  40.639  22.090  1.00 25.00           C
ATOM     98  CA  TYR    98      39.476  44.326  22.549  1.00 25.00           C
ATOM     99  CA  ASP    99      39.222  43.942  26.352  1.00 25.00           C
ATOM    100  CA  ILE   100      41.461  40.840  26.212  1.00 25.00           C
ATOM    101  CA  GLU   101      44.020  42.751  24.099  1.00 25.00           C
ATOM    102  CA  ALA   102      43.974  45.640  26.613  1.00 25.00           C
ATOM    103  CA  LEU   103      44.515  43.175  29.493  1.00 25.00           C
ATOM    104  CA  TRP   104      47.456  41.593  27.619  1.00 25.00           C
ATOM    105  CA  GLY   105      49.477  44.696  26.647  1.00 25.00           C
ATOM    106  CA  GLY   106      51.018  43.230  23.490  1.00 25.00           C
ATOM    107  CA  GLN   107      50.893  46.253  21.157  1.00 25.00           C
ATOM    108  CA  LYS   108      52.346  45.785  17.609  1.00 25.00           C
ATOM    109  CA  PRO   109      51.648  45.497  13.865  1.00 25.00           C
ATOM    110  CA  SER   110      50.778  41.873  13.012  1.00 25.00           C
ATOM    111  CA  PHE   111      48.709  39.215  11.245  1.00 25.00           C
ATOM    112  CA  ALA   112      47.702  36.459   8.825  1.00 25.00           C
ATOM    113  CA  VAL   113      46.420  36.315   5.278  1.00 25.00           C
ATOM    114  CA  GLY   114      48.242  35.721   2.043  1.00 25.00           C
ATOM    115  CA  ALA   115      50.671  38.286   0.505  1.00 25.00           C
ATOM    116  CA  ALA   116      50.672  36.042  -2.514  1.00 25.00           C
ATOM    117  CA  LYS   117      53.766  34.601  -4.183  1.00 25.00           C
ATOM    118  CA  PRO   118      56.510  32.798  -6.133  1.00 25.00           C
ATOM    119  CA  TRP   119      59.454  33.674  -4.006  1.00 25.00           C
ATOM    120  CA  SER   120      62.013  36.426  -4.405  1.00 25.00           C
ATOM    121  CA  ALA   121      64.645  33.835  -5.221  1.00 25.00           C
ATOM    122  CA  VAL   122      66.528  30.545  -5.800  1.00 25.00           C
ATOM    123  CA  LEU   123      64.748  29.103  -2.778  1.00 25.00           C
ATOM    124  CA  GLU   124      66.511  30.905   0.105  1.00 25.00           C
ATOM    125  CA  HIS   125      68.910  27.948   0.518  1.00 25.00           C
ATOM    126  CA  HIS   126      66.548  25.030  -0.096  1.00 25.00           C
ATOM    127  CA  HIS   127      66.576  23.756   3.430  1.00 25.00           C
ATOM    128  CA  HIS   128      65.430  26.567   5.642  1.00 25.00           C
ATOM    129  CA  HIS   129      67.387  27.476   8.772  1.00 25.00           C
ATOM    130  CA  HIS   130      64.919  26.377  11.502  1.00 25.00           C
TER
END
