
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS393_3
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS393_3.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        31 - 70          4.99    18.62
  LONGEST_CONTINUOUS_SEGMENT:    40        32 - 71          4.92    18.81
  LCS_AVERAGE:     25.52

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        44 - 66          1.87    19.03
  LCS_AVERAGE:      9.82

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        44 - 62          0.90    17.83
  LCS_AVERAGE:      6.67

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      3   17   31     3    3    3    5   11   16   20   23   26   29   30   31   40   46   51   56   60   63   66   68 
LCS_GDT     E       2     E       2     15   17   31     3    3   12   15   18   20   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     I       3     I       3     15   17   31     7   14   17   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     Q       4     Q       4     15   17   31    13   14   15   16   20   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     E       5     E       5     15   17   31    13   14   15   16   19   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     I       6     I       6     15   17   31    13   14   15   16   20   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     S       7     S       7     15   17   31    13   14   15   16   20   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     K       8     K       8     15   17   31    13   14   15   16   18   20   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     L       9     L       9     15   17   31    13   14   15   16   18   20   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     A      10     A      10     15   17   31    13   14   15   16   18   20   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     I      11     I      11     15   17   31    13   14   15   16   18   20   21   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     E      12     E      12     15   17   31    13   14   15   16   18   20   21   23   33   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     A      13     A      13     15   17   31    13   14   15   16   18   20   21   23   33   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     L      14     L      14     15   17   31    13   14   15   16   18   20   21   23   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     E      15     E      15     15   17   31    13   14   15   16   18   20   21   23   26   35   41   45   47   48   53   57   60   63   66   68 
LCS_GDT     D      16     D      16     15   17   31    13   14   15   16   18   20   21   23   26   35   39   45   47   48   53   57   60   63   66   68 
LCS_GDT     I      17     I      17      3   17   31     3    3    6   14   17   18   20   23   26   35   39   45   47   48   51   56   60   63   66   68 
LCS_GDT     K      18     K      18      3   16   31     3    3    3    4    5    9   11   16   20   28   31   45   47   49   53   57   60   63   66   68 
LCS_GDT     G      19     G      19      3    6   31     3    3    7   13   17   20   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     K      20     K      20      4    6   31     3    3    4    7   12   16   20   23   26   29   31   36   42   47   51   56   58   61   66   68 
LCS_GDT     D      21     D      21      4    6   31     3    3    4    6    8   12   19   23   26   29   30   31   34   35   39   49   52   55   60   64 
LCS_GDT     I      22     I      22      4    6   31     3    3    4    7    8   16   20   23   26   29   35   41   45   49   53   57   60   63   66   68 
LCS_GDT     I      23     I      23      4    6   31     3    3    4    6    8   16   20   23   26   29   30   31   39   46   49   56   59   63   66   68 
LCS_GDT     E      24     E      24      4    6   31     3    3    4    6    7   14   19   23   26   29   30   31   34   35   43   49   58   61   66   68 
LCS_GDT     L      25     L      25      4    6   31     3    3    4    5    9   14   18   23   26   29   30   31   34   35   43   49   52   61   65   67 
LCS_GDT     D      26     D      26      4    6   31     3    3    4    6    8   11   16   23   26   29   30   31   34   35   43   52   58   61   66   68 
LCS_GDT     T      27     T      27      4    6   31     0    3    4    8   10   14   20   23   26   29   30   35   42   47   53   57   60   63   66   68 
LCS_GDT     S      28     S      28      4    6   31     3    3    4    8   10   14   20   23   26   29   31   35   42   49   53   57   60   63   66   68 
LCS_GDT     K      29     K      29      4    6   31     3    3    4    8   13   17   20   22   26   29   31   37   44   49   53   57   60   63   66   68 
LCS_GDT     L      30     L      30      4    5   31     3    3    4    9    9   13   18   18   23   31   37   42   47   49   53   57   60   63   66   68 
LCS_GDT     T      31     T      31      4    5   40     0    3    4    5    5   10   13   15   16   18   30   35   41   47   51   56   58   61   65   67 
LCS_GDT     S      32     S      32      4    5   40     2    3    4    5    5    7    8   10   13   15   16   18   28   33   36   44   51   55   60   63 
LCS_GDT     L      33     L      33      4    5   40     1    3    4    5    5    7   11   12   17   22   28   34   36   39   44   46   49   55   60   63 
LCS_GDT     F      34     F      34      3    6   40     3    3    4    4    8    9   11   13   17   22   25   31   35   39   42   45   48   54   58   63 
LCS_GDT     Q      35     Q      35      3    6   40     3    3    4    6    8    9   11   13   17   24   32   35   37   41   44   49   54   57   61   63 
LCS_GDT     R      36     R      36      4    7   40     4    4    5    8   12   18   22   26   30   37   39   45   46   49   52   57   60   63   66   68 
LCS_GDT     M      37     M      37      4    7   40     4    4    5    8   11   18   22   27   31   37   42   45   47   49   52   57   60   63   66   68 
LCS_GDT     I      38     I      38      4    7   40     4    4    5    7    8   14   24   27   33   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     V      39     V      39      4    7   40     4    4    5   16   19   21   25   28   33   36   39   45   47   49   53   57   60   63   66   68 
LCS_GDT     A      40     A      40      4   22   40     3    4    5    7    9   21   24   26   30   34   39   43   46   49   53   57   60   63   66   68 
LCS_GDT     T      41     T      41      4   22   40     3    4    5    7   16   21   24   26   31   36   39   43   46   49   53   57   60   63   66   68 
LCS_GDT     G      42     G      42      4   22   40     3    4    5    7    8   10   12   22   26   33   37   41   46   49   51   57   60   63   66   68 
LCS_GDT     D      43     D      43      3   22   40     3    3    7   16   19   21   26   28   32   36   39   43   46   49   53   57   60   63   66   68 
LCS_GDT     S      44     S      44     19   23   40    10   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     N      45     N      45     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     R      46     R      46     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     Q      47     Q      47     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     V      48     V      48     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     K      49     K      49     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     A      50     A      50     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     L      51     L      51     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     A      52     A      52     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     N      53     N      53     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     S      54     S      54     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     V      55     V      55     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     Q      56     Q      56     19   23   40    13   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     V      57     V      57     19   23   40    12   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     K      58     K      58     19   23   40     6   17   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     L      59     L      59     19   23   40     9   17   18   19   21   23   26   30   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     K      60     K      60     19   23   40    13   17   18   19   21   23   26   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     E      61     E      61     19   23   40     5   16   18   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     A      62     A      62     19   23   40     3    6   14   19   21   24   28   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     G      63     G      63      6   23   40     3    8   13   19   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     V      64     V      64      6   23   40     3    5   15   16   21   24   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     D      65     D      65      6   23   40     2    4    8   12   18   22   25   27   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     I      66     I      66      6   23   40     2    5    9   16   21   22   29   32   34   38   42   45   47   49   53   57   60   63   66   68 
LCS_GDT     V      67     V      67      5    9   40     4    4    5    6    9   20   20   22   24   28   42   45   47   49   52   57   60   63   66   68 
LCS_GDT     G      68     G      68      5    9   40     4    4    5   10   13   22   25   28   33   37   42   45   47   49   52   56   58   63   66   68 
LCS_GDT     S      69     S      69      5    7   40     4    4    5    6    9   18   25   28   31   37   42   45   46   49   52   55   58   63   66   68 
LCS_GDT     E      70     E      70      5    7   40     4    4    5    7   12   22   25   27   29   37   37   40   43   47   50   54   57   60   63   66 
LCS_GDT     G      71     G      71      5    7   40     0    3    5    7    8   16   23   27   28   37   37   40   42   44   48   53   56   58   61   64 
LCS_GDT     H      72     H      72      4    7   39     3    4    4    6    7    8   10   14   15   17   23   24   29   36   40   44   46   49   53   61 
LCS_GDT     E      73     E      73      4    7   35     3    4    4    6    8    9   11   14   15   19   23   27   29   36   39   43   45   48   51   53 
LCS_GDT     S      74     S      74      4    7   35     3    4    4    7    7    8   11   16   17   24   27   28   32   36   39   43   45   49   51   53 
LCS_GDT     G      75     G      75      4    7   35     3    4    4    7    8   13   17   21   22   26   27   30   34   36   40   44   46   49   53   55 
LCS_GDT     E      76     E      76      3    7   35     3    3    5    7   11   14   21   21   22   26   27   30   34   36   42   44   46   50   53   55 
LCS_GDT     W      77     W      77      4    7   35     3    3    5    6    7    8   10   10   11   20   26   29   32   36   42   44   48   50   53   55 
LCS_GDT     V      78     V      78      4    7   23     3    3    5    6    7    9   10   12   15   16   16   21   27   30   33   38   41   46   50   52 
LCS_GDT     L      79     L      79      4    8   25     3    3    5    7    7    9   11   15   15   16   19   23   27   30   33   38   41   46   50   52 
LCS_GDT     V      80     V      80      5    9   25     3    4    6    7    8   10   12   14   16   19   21   25   28   30   33   38   41   46   50   52 
LCS_GDT     D      81     D      81      6    9   25     4    4    7    8    9   11   12   14   16   19   23   27   30   31   34   38   41   46   50   52 
LCS_GDT     A      82     A      82      6    9   25     4    5    7    8    9   11   12   14   16   19   23   27   30   31   34   38   41   46   50   52 
LCS_GDT     G      83     G      83      6    9   25     4    5    7    8    9   11   12   14   16   19   23   27   30   31   34   38   41   46   50   52 
LCS_GDT     D      84     D      84      6    9   25     4    5    7    8    9   11   12   14   16   19   23   27   30   31   34   38   41   46   50   52 
LCS_GDT     V      85     V      85      6    9   25     3    5    7    8    9   11   12   14   16   19   23   27   30   31   34   38   41   46   50   52 
LCS_GDT     V      86     V      86      6    9   25     3    5    7    8    9   11   12   14   16   19   23   27   30   31   34   38   44   46   50   52 
LCS_GDT     V      87     V      87      4    9   25     3    4    7    8    9   11   12   15   16   19   23   27   30   39   42   45   50   57   61   63 
LCS_GDT     H      88     H      88      4    9   25     3    4    7    8    9   11   12   14   17   32   38   45   46   49   52   55   58   63   66   68 
LCS_GDT     V      89     V      89      4    6   25     3    3    5    7    9   10   12   14   16   19   31   35   37   44   50   55   58   63   66   68 
LCS_GDT     M      90     M      90      4    6   25     3    3    5    7    9   11   12   14   16   22   32   41   46   49   52   56   60   63   66   68 
LCS_GDT     L      91     L      91      4    9   25     3    3    4    7    8   10   12   14   27   33   38   41   46   49   52   57   60   63   66   68 
LCS_GDT     P      92     P      92      8    9   25     6    8    8    8    9   16   19   24   28   34   37   43   45   49   53   57   60   63   66   68 
LCS_GDT     A      93     A      93      8    9   25     6    8    8    8    9   10   12   14   17   19   24   38   43   45   49   56   60   63   66   68 
LCS_GDT     V      94     V      94      8    9   25     6    8    8    8    9   11   19   21   28   32   37   43   45   49   53   57   60   63   66   68 
LCS_GDT     R      95     R      95      8    9   25     6    8    8    8    9   10   12   15   21   25   32   39   44   49   53   57   60   63   66   68 
LCS_GDT     D      96     D      96      8    9   25     6    8    8    8   10   11   14   16   17   19   21   29   29   33   47   54   60   63   66   68 
LCS_GDT     Y      97     Y      97      8    9   25     6    8    8    8    9   10   12   16   17   19   23   27   30   31   40   46   50   62   65   68 
LCS_GDT     Y      98     Y      98      8    9   25     4    8    8    8    9   10   14   16   17   24   27   29   31   37   49   55   60   63   66   68 
LCS_GDT     D      99     D      99      8    9   25     4    8    8    8    9   18   18   22   24   29   30   31   34   34   37   44   50   55   56   61 
LCS_GDT     I     100     I     100      6    7   25     4    6    6   10   15   18   19   23   26   29   30   31   34   34   39   49   52   59   62   67 
LCS_GDT     E     101     E     101      6    7   25     4    6    6    7    8   10   11   12   17   19   24   31   34   34   35   38   41   46   50   52 
LCS_GDT     A     102     A     102      6    7   25     4    6    6    7    8   10   11   23   26   28   30   31   34   34   35   38   41   46   50   52 
LCS_GDT     L     103     L     103      6    7   25     4    6    6    7    9   15   19   23   26   28   30   31   34   34   35   38   41   46   50   52 
LCS_GDT     W     104     W     104      6    7   24     4    6    6    7    8   11   19   23   26   27   30   31   34   34   35   37   41   46   50   52 
LCS_GDT     G     105     G     105      3    6   21     3    3    4    6    6   10   11   14   17   19   21   26   30   31   34   38   41   46   50   52 
LCS_GDT     G     106     G     106      4    6   21     3    3    4    6    6    9   11   14   16   18   21   24   30   31   34   37   41   45   50   52 
LCS_GDT     Q     107     Q     107      4    6   21     3    3    4    6    6    9   11   14   15   18   20   27   30   31   34   38   41   46   50   52 
LCS_GDT     K     108     K     108      4    7   20     2    3    4    6    8   11   12   13   15   17   19   21   25   26   30   34   39   43   50   52 
LCS_GDT     P     109     P     109      4    7   19     3    3    4    6    8   11   12   14   15   17   20   24   25   27   30   35   40   43   50   52 
LCS_GDT     S     110     S     110      3    7   19     3    3    4    6    8   11   12   14   15   19   23   27   30   31   34   38   41   46   50   52 
LCS_GDT     F     111     F     111      3    7   19     3    3    4    5    8   11   12   14   15   19   22   27   30   31   33   38   41   46   50   52 
LCS_GDT     A     112     A     112      3    7   19     2    3    4    6    8   11   12   14   15   19   23   27   30   31   34   38   41   46   50   52 
LCS_GDT     V     113     V     113      4    7   19     2    3    5    6    8   11   12   14   15   19   22   27   30   31   33   37   41   46   50   52 
LCS_GDT     G     114     G     114      4    7   19     1    3    5    6    8   11   12   13   14   16   20   23   25   29   33   35   39   42   46   51 
LCS_GDT     A     115     A     115      4    7   19     2    3    5    5    5    8   12   13   14   15   16   20   23   25   29   31   35   40   41   45 
LCS_GDT     A     116     A     116      4    5   19     3    3    5    6    8   11   12   13   14   15   16   20   23   25   29   30   35   40   41   45 
LCS_GDT     K     117     K     117      4    5   18     3    3    5    6    7   11   12   13   14   15   16   20   23   24   29   29   31   31   33   35 
LCS_GDT     P     118     P     118      3    5   18     3    3    3    4    4    5    7   11   13   14   14   15   21   24   29   29   31   31   33   35 
LCS_GDT     W     119     W     119      4    5   18     3    4    4    6    8   11   12   13   14   15   16   20   23   24   29   29   31   31   33   35 
LCS_GDT     S     120     S     120      4    5   18     3    4    4    6    8   11   12   13   14   15   16   20   23   24   29   29   31   36   37   39 
LCS_GDT     A     121     A     121      4    5   18     3    4    4    4    4    5    5   10   12   14   14   14   23   24   29   29   31   31   33   35 
LCS_GDT     V     122     V     122      4    5   17     3    4    4    4    4    5    5    5    5    5    7    7    7    7    7    7   13   14   15   15 
LCS_AVERAGE  LCS_A:  14.00  (   6.67    9.82   25.52 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     18     19     21     24     29     32     34     38     42     45     47     49     53     57     60     63     66     68 
GDT PERCENT_CA  10.66  13.93  14.75  15.57  17.21  19.67  23.77  26.23  27.87  31.15  34.43  36.89  38.52  40.16  43.44  46.72  49.18  51.64  54.10  55.74
GDT RMS_LOCAL    0.21   0.51   0.59   0.93   1.27   1.81   2.46   2.60   2.74   3.16   3.52   3.80   4.02   4.33   4.92   5.15   5.35   5.50   5.76   5.94
GDT RMS_ALL_CA  18.99  17.95  17.93  18.13  17.91  17.80  18.13  18.15  18.18  18.19  18.68  18.42  18.42  17.88  17.07  17.07  17.02  17.52  17.54  17.30

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          9.603
LGA    E       2      E       2          3.723
LGA    I       3      I       3          0.909
LGA    Q       4      Q       4          1.914
LGA    E       5      E       5          2.354
LGA    I       6      I       6          2.107
LGA    S       7      S       7          1.661
LGA    K       8      K       8          3.234
LGA    L       9      L       9          3.736
LGA    A      10      A      10          3.630
LGA    I      11      I      11          3.974
LGA    E      12      E      12          5.111
LGA    A      13      A      13          5.363
LGA    L      14      L      14          4.986
LGA    E      15      E      15          5.953
LGA    D      16      D      16          7.030
LGA    I      17      I      17          7.509
LGA    K      18      K      18          5.949
LGA    G      19      G      19          3.877
LGA    K      20      K      20          9.760
LGA    D      21      D      21         13.283
LGA    I      22      I      22          8.982
LGA    I      23      I      23         10.199
LGA    E      24      E      24         12.202
LGA    L      25      L      25         14.426
LGA    D      26      D      26         13.385
LGA    T      27      T      27         10.664
LGA    S      28      S      28         11.404
LGA    K      29      K      29         11.458
LGA    L      30      L      30          8.859
LGA    T      31      T      31         11.292
LGA    S      32      S      32         14.472
LGA    L      33      L      33         16.266
LGA    F      34      F      34         16.694
LGA    Q      35      Q      35         14.764
LGA    R      36      R      36          7.631
LGA    M      37      M      37          7.025
LGA    I      38      I      38          5.952
LGA    V      39      V      39          6.480
LGA    A      40      A      40          8.610
LGA    T      41      T      41          8.194
LGA    G      42      G      42          9.444
LGA    D      43      D      43          6.169
LGA    S      44      S      44          1.404
LGA    N      45      N      45          1.198
LGA    R      46      R      46          1.437
LGA    Q      47      Q      47          1.228
LGA    V      48      V      48          1.407
LGA    K      49      K      49          1.732
LGA    A      50      A      50          1.652
LGA    L      51      L      51          1.960
LGA    A      52      A      52          2.334
LGA    N      53      N      53          2.370
LGA    S      54      S      54          2.270
LGA    V      55      V      55          2.842
LGA    Q      56      Q      56          3.257
LGA    V      57      V      57          2.361
LGA    K      58      K      58          2.893
LGA    L      59      L      59          4.334
LGA    K      60      K      60          3.921
LGA    E      61      E      61          2.448
LGA    A      62      A      62          3.198
LGA    G      63      G      63          1.983
LGA    V      64      V      64          3.014
LGA    D      65      D      65          4.520
LGA    I      66      I      66          3.572
LGA    V      67      V      67          6.572
LGA    G      68      G      68          5.804
LGA    S      69      S      69          6.266
LGA    E      70      E      70          8.451
LGA    G      71      G      71         10.238
LGA    H      72      H      72         15.297
LGA    E      73      E      73         20.010
LGA    S      74      S      74         20.221
LGA    G      75      G      75         15.211
LGA    E      76      E      76         14.285
LGA    W      77      W      77         14.547
LGA    V      78      V      78         15.682
LGA    L      79      L      79         18.181
LGA    V      80      V      80         23.156
LGA    D      81      D      81         23.856
LGA    A      82      A      82         25.088
LGA    G      83      G      83         28.293
LGA    D      84      D      84         26.031
LGA    V      85      V      85         20.350
LGA    V      86      V      86         16.494
LGA    V      87      V      87         12.602
LGA    H      88      H      88          7.812
LGA    V      89      V      89          8.774
LGA    M      90      M      90          7.264
LGA    L      91      L      91          8.534
LGA    P      92      P      92         11.203
LGA    A      93      A      93         11.907
LGA    V      94      V      94         11.654
LGA    R      95      R      95         14.042
LGA    D      96      D      96         16.133
LGA    Y      97      Y      97         17.349
LGA    Y      98      Y      98         18.116
LGA    D      99      D      99         20.913
LGA    I     100      I     100         18.443
LGA    E     101      E     101         22.751
LGA    A     102      A     102         28.667
LGA    L     103      L     103         27.287
LGA    W     104      W     104         26.242
LGA    G     105      G     105         28.369
LGA    G     106      G     106         26.463
LGA    Q     107      Q     107         28.686
LGA    K     108      K     108         29.939
LGA    P     109      P     109         32.903
LGA    S     110      S     110         33.683
LGA    F     111      F     111         34.013
LGA    A     112      A     112         37.886
LGA    V     113      V     113         38.879
LGA    G     114      G     114         40.175
LGA    A     115      A     115         39.899
LGA    A     116      A     116         43.003
LGA    K     117      K     117         43.377
LGA    P     118      P     118         42.949
LGA    W     119      W     119         38.172
LGA    S     120      S     120         36.544
LGA    A     121      A     121         39.588
LGA    V     122      V     122         46.254

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     32    2.60    25.615    21.538     1.183

LGA_LOCAL      RMSD =  2.604  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.188  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 15.058  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.291046 * X  +  -0.788720 * Y  +   0.541491 * Z  +  42.082104
  Y_new =  -0.825885 * X  +   0.492826 * Y  +   0.273930 * Z  +  33.217804
  Z_new =  -0.482915 * X  +  -0.367483 * Y  +  -0.794827 * Z  +  23.520615 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.708522    0.433071  [ DEG:  -155.1869     24.8131 ]
  Theta =   0.503980    2.637612  [ DEG:    28.8759    151.1241 ]
  Phi   =  -1.909613    1.231980  [ DEG:  -109.4128     70.5872 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS393_3                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS393_3.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   32   2.60  21.538    15.06
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS393_3
PFRMAT TS
TARGET T0354
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      52.858  15.694  14.825  1.00 25.00           C
ATOM      2  CA  GLU     2      52.556  19.477  14.147  1.00 25.00           C
ATOM      3  CA  ILE     3      51.015  21.709  16.892  1.00 25.00           C
ATOM      4  CA  GLN     4      50.337  18.287  18.472  1.00 25.00           C
ATOM      5  CA  GLU     5      53.294  18.775  20.858  1.00 25.00           C
ATOM      6  CA  ILE     6      51.970  22.236  21.827  1.00 25.00           C
ATOM      7  CA  SER     7      48.501  20.752  22.481  1.00 25.00           C
ATOM      8  CA  LYS     8      50.054  18.014  24.662  1.00 25.00           C
ATOM      9  CA  LEU     9      52.011  20.655  26.627  1.00 25.00           C
ATOM     10  CA  ALA    10      48.803  22.684  27.141  1.00 25.00           C
ATOM     11  CA  ILE    11      46.988  19.545  28.375  1.00 25.00           C
ATOM     12  CA  GLU    12      49.852  18.815  30.810  1.00 25.00           C
ATOM     13  CA  ALA    13      49.700  22.415  32.108  1.00 25.00           C
ATOM     14  CA  LEU    14      45.914  22.103  32.599  1.00 25.00           C
ATOM     15  CA  GLU    15      46.407  18.819  34.508  1.00 25.00           C
ATOM     16  CA  ASP    16      49.047  20.479  36.731  1.00 25.00           C
ATOM     17  CA  ILE    17      50.082  24.166  36.937  1.00 25.00           C
ATOM     18  CA  LYS    18      47.593  26.172  34.980  1.00 25.00           C
ATOM     19  CA  GLY    19      44.207  25.975  36.795  1.00 25.00           C
ATOM     20  CA  LYS    20      44.835  29.233  38.650  1.00 25.00           C
ATOM     21  CA  ASP    21      44.953  30.776  35.174  1.00 25.00           C
ATOM     22  CA  ILE    22      41.609  29.483  34.084  1.00 25.00           C
ATOM     23  CA  ILE    23      43.420  27.902  31.159  1.00 25.00           C
ATOM     24  CA  GLU    24      43.343  30.162  28.067  1.00 25.00           C
ATOM     25  CA  LEU    25      40.366  31.498  26.079  1.00 25.00           C
ATOM     26  CA  ASP    26      39.179  29.040  23.348  1.00 25.00           C
ATOM     27  CA  THR    27      40.780  28.228  19.984  1.00 25.00           C
ATOM     28  CA  SER    28      40.065  28.557  16.260  1.00 25.00           C
ATOM     29  CA  LYS    29      37.759  26.906  13.757  1.00 25.00           C
ATOM     30  CA  LEU    30      35.665  25.276  16.502  1.00 25.00           C
ATOM     31  CA  THR    31      34.697  24.942  20.150  1.00 25.00           C
ATOM     32  CA  SER    32      36.640  22.449  22.296  1.00 25.00           C
ATOM     33  CA  LEU    33      36.161  19.343  24.522  1.00 25.00           C
ATOM     34  CA  PHE    34      36.309  20.108  28.281  1.00 25.00           C
ATOM     35  CA  GLN    35      40.109  20.109  28.592  1.00 25.00           C
ATOM     36  CA  ARG    36      40.940  22.038  25.374  1.00 25.00           C
ATOM     37  CA  MET    37      38.680  24.701  26.879  1.00 25.00           C
ATOM     38  CA  ILE    38      35.486  26.417  25.704  1.00 25.00           C
ATOM     39  CA  VAL    39      34.568  30.072  25.485  1.00 25.00           C
ATOM     40  CA  ALA    40      34.887  32.990  27.841  1.00 25.00           C
ATOM     41  CA  THR    41      32.264  33.893  30.425  1.00 25.00           C
ATOM     42  CA  GLY    42      29.533  36.087  31.819  1.00 25.00           C
ATOM     43  CA  ASP    43      29.475  33.759  34.877  1.00 25.00           C
ATOM     44  CA  SER    44      33.129  33.585  36.041  1.00 25.00           C
ATOM     45  CA  ASN    45      33.421  37.081  34.569  1.00 25.00           C
ATOM     46  CA  ARG    46      36.482  38.212  36.576  1.00 25.00           C
ATOM     47  CA  GLN    47      38.006  34.712  36.270  1.00 25.00           C
ATOM     48  CA  VAL    48      37.393  34.749  32.489  1.00 25.00           C
ATOM     49  CA  LYS    49      39.058  38.188  32.228  1.00 25.00           C
ATOM     50  CA  ALA    50      42.069  36.909  34.219  1.00 25.00           C
ATOM     51  CA  LEU    51      42.335  33.867  31.908  1.00 25.00           C
ATOM     52  CA  ALA    52      42.208  36.154  28.839  1.00 25.00           C
ATOM     53  CA  ASN    53      44.962  38.355  30.334  1.00 25.00           C
ATOM     54  CA  SER    54      47.110  35.254  31.004  1.00 25.00           C
ATOM     55  CA  VAL    55      46.586  34.082  27.395  1.00 25.00           C
ATOM     56  CA  GLN    56      47.597  37.542  26.099  1.00 25.00           C
ATOM     57  CA  VAL    57      50.746  37.464  28.277  1.00 25.00           C
ATOM     58  CA  LYS    58      51.618  33.984  26.937  1.00 25.00           C
ATOM     59  CA  LEU    59      51.142  35.222  23.344  1.00 25.00           C
ATOM     60  CA  LYS    60      53.412  38.224  24.052  1.00 25.00           C
ATOM     61  CA  GLU    61      56.076  35.896  25.519  1.00 25.00           C
ATOM     62  CA  ALA    62      58.180  32.786  26.283  1.00 25.00           C
ATOM     63  CA  GLY    63      58.620  32.639  22.501  1.00 25.00           C
ATOM     64  CA  VAL    64      55.070  31.353  22.446  1.00 25.00           C
ATOM     65  CA  ASP    65      51.537  31.013  20.947  1.00 25.00           C
ATOM     66  CA  ILE    66      47.888  32.055  21.080  1.00 25.00           C
ATOM     67  CA  VAL    67      44.363  33.275  21.851  1.00 25.00           C
ATOM     68  CA  GLY    68      40.626  33.220  20.910  1.00 25.00           C
ATOM     69  CA  SER    69      36.831  33.154  20.569  1.00 25.00           C
ATOM     70  CA  GLU    70      34.881  30.771  18.363  1.00 25.00           C
ATOM     71  CA  GLY    71      31.899  29.676  20.429  1.00 25.00           C
ATOM     72  CA  HIS    72      28.124  29.350  20.572  1.00 25.00           C
ATOM     73  CA  GLU    73      26.130  26.301  21.585  1.00 25.00           C
ATOM     74  CA  SER    74      28.257  23.156  21.230  1.00 25.00           C
ATOM     75  CA  GLY    75      30.688  24.737  23.650  1.00 25.00           C
ATOM     76  CA  GLU    76      29.834  21.689  25.845  1.00 25.00           C
ATOM     77  CA  TRP    77      31.203  19.445  28.577  1.00 25.00           C
ATOM     78  CA  VAL    78      30.086  21.529  31.606  1.00 25.00           C
ATOM     79  CA  LEU    79      29.030  23.201  34.903  1.00 25.00           C
ATOM     80  CA  VAL    80      26.614  24.451  37.516  1.00 25.00           C
ATOM     81  CA  ASP    81      28.277  27.884  37.156  1.00 25.00           C
ATOM     82  CA  ALA    82      31.487  26.290  38.329  1.00 25.00           C
ATOM     83  CA  GLY    83      33.009  29.451  39.755  1.00 25.00           C
ATOM     84  CA  ASP    84      36.570  29.514  38.373  1.00 25.00           C
ATOM     85  CA  VAL    85      37.000  26.117  36.643  1.00 25.00           C
ATOM     86  CA  VAL    86      34.265  27.007  34.113  1.00 25.00           C
ATOM     87  CA  VAL    87      31.484  27.110  31.516  1.00 25.00           C
ATOM     88  CA  HIS    88      30.528  27.572  27.846  1.00 25.00           C
ATOM     89  CA  VAL    89      28.480  30.579  29.140  1.00 25.00           C
ATOM     90  CA  MET    90      27.529  32.246  25.837  1.00 25.00           C
ATOM     91  CA  LEU    91      26.133  35.390  27.504  1.00 25.00           C
ATOM     92  CA  PRO    92      29.667  36.623  26.824  1.00 25.00           C
ATOM     93  CA  ALA    93      31.403  35.179  23.730  1.00 25.00           C
ATOM     94  CA  VAL    94      31.501  38.659  22.133  1.00 25.00           C
ATOM     95  CA  ARG    95      33.005  40.115  25.340  1.00 25.00           C
ATOM     96  CA  ASP    96      35.656  37.351  25.381  1.00 25.00           C
ATOM     97  CA  TYR    97      36.504  38.076  21.717  1.00 25.00           C
ATOM     98  CA  TYR    98      36.831  41.810  22.507  1.00 25.00           C
ATOM     99  CA  ASP    99      39.142  41.010  25.453  1.00 25.00           C
ATOM    100  CA  ILE   100      41.284  38.776  23.199  1.00 25.00           C
ATOM    101  CA  GLU   101      41.502  41.574  20.592  1.00 25.00           C
ATOM    102  CA  ALA   102      42.556  44.058  23.310  1.00 25.00           C
ATOM    103  CA  LEU   103      45.245  41.619  24.531  1.00 25.00           C
ATOM    104  CA  TRP   104      46.530  41.204  20.946  1.00 25.00           C
ATOM    105  CA  GLY   105      47.914  38.981  18.188  1.00 25.00           C
ATOM    106  CA  GLY   106      49.216  36.182  16.017  1.00 25.00           C
ATOM    107  CA  GLN   107      47.710  34.800  12.861  1.00 25.00           C
ATOM    108  CA  LYS   108      47.073  35.038   9.070  1.00 25.00           C
ATOM    109  CA  PRO   109      44.976  34.044   6.109  1.00 25.00           C
ATOM    110  CA  SER   110      41.814  34.934   8.020  1.00 25.00           C
ATOM    111  CA  PHE   111      38.799  36.891   6.731  1.00 25.00           C
ATOM    112  CA  ALA   112      37.006  40.145   6.343  1.00 25.00           C
ATOM    113  CA  VAL   113      35.884  43.739   6.665  1.00 25.00           C
ATOM    114  CA  GLY   114      36.825  46.960   4.920  1.00 25.00           C
ATOM    115  CA  ALA   115      38.201  50.426   4.026  1.00 25.00           C
ATOM    116  CA  ALA   116      41.740  51.781   3.899  1.00 25.00           C
ATOM    117  CA  LYS   117      44.381  52.379   1.227  1.00 25.00           C
ATOM    118  CA  PRO   118      46.955  54.866   2.343  1.00 25.00           C
ATOM    119  CA  TRP   119      47.429  54.780   6.069  1.00 25.00           C
ATOM    120  CA  SER   120      46.124  56.124   9.377  1.00 25.00           C
ATOM    121  CA  ALA   121      49.377  57.244  10.992  1.00 25.00           C
ATOM    122  CA  VAL   122      52.502  58.421   9.147  1.00 25.00           C
ATOM    123  CA  LEU   123      55.222  57.930  11.678  1.00 25.00           C
ATOM    124  CA  GLU   124      55.473  55.254  14.405  1.00 25.00           C
ATOM    125  CA  HIS   125      54.986  52.503  11.785  1.00 25.00           C
ATOM    126  CA  HIS   126      57.863  53.634   9.584  1.00 25.00           C
ATOM    127  CA  HIS   127      60.396  53.765  12.468  1.00 25.00           C
ATOM    128  CA  HIS   128      60.930  49.961  12.248  1.00 25.00           C
ATOM    129  CA  HIS   129      63.729  47.557  13.170  1.00 25.00           C
ATOM    130  CA  HIS   130      61.482  44.722  14.501  1.00 25.00           C
TER
END
