
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS393_4
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS393_4.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        30 - 71          4.97    19.74
  LCS_AVERAGE:     26.08

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        38 - 66          1.93    19.13
  LCS_AVERAGE:     12.21

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        44 - 64          0.98    19.07
  LCS_AVERAGE:      7.27

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      3   17   32     3    5    6    8   10   10   12   13   16   22   30   33   40   43   50   55   61   62   63   69 
LCS_GDT     E       2     E       2     15   17   32    14   16   16   19   23   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     I       3     I       3     15   17   32    10   16   19   21   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     Q       4     Q       4     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     E       5     E       5     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     I       6     I       6     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     S       7     S       7     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     K       8     K       8     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     L       9     L       9     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     A      10     A      10     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     I      11     I      11     15   17   32    14   16   16   19   22   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     E      12     E      12     15   17   32    14   16   16   19   22   27   30   32   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     A      13     A      13     15   17   32    14   16   16   19   22   27   30   32   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     L      14     L      14     15   17   32    14   16   16   19   22   27   30   32   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     E      15     E      15     15   17   32    14   16   16   19   22   27   30   32   34   39   42   45   46   51   53   56   61   63   65   69 
LCS_GDT     D      16     D      16     15   17   32    14   16   16   19   22   27   29   32   34   38   42   45   46   51   53   56   61   63   65   69 
LCS_GDT     I      17     I      17      3   17   32     3    4    9   15   17   17   19   22   27   30   34   36   44   48   53   56   61   62   65   69 
LCS_GDT     K      18     K      18      3   17   32     3    3    5    6    8   12   18   21   24   27   34   42   47   51   53   56   61   63   65   69 
LCS_GDT     G      19     G      19      3   10   32     3    3    6    9   15   17   18   21   33   38   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     K      20     K      20      3   10   32     3    3    5   10   12   15   18   21   24   27   34   42   47   50   53   56   61   63   65   69 
LCS_GDT     D      21     D      21      3   10   32     3    3    6   10   12   15   18   21   24   27   30   33   38   46   51   56   61   62   64   68 
LCS_GDT     I      22     I      22      3   10   32     3    4    6   10   12   15   18   21   24   30   37   42   47   51   53   56   61   63   65   69 
LCS_GDT     I      23     I      23      4   10   32     3    4    4    7   11   15   18   21   24   30   34   42   47   51   53   56   61   63   65   69 
LCS_GDT     E      24     E      24      4   10   32     3    4    5    8   12   15   18   21   24   27   30   35   44   50   53   56   61   63   65   69 
LCS_GDT     L      25     L      25      4   10   32     3    4    5   10   12   15   18   21   24   27   31   35   44   46   51   56   61   62   65   69 
LCS_GDT     D      26     D      26      4   10   32     2    4    5   10   12   15   18   21   24   27   30   35   40   44   47   55   57   60   64   67 
LCS_GDT     T      27     T      27      4   10   32     1    4    6   10   12   15   18   21   24   27   31   36   44   46   51   56   61   62   65   69 
LCS_GDT     S      28     S      28      4   10   32     3    4    5    8   12   15   18   21   24   27   31   35   40   44   49   55   57   59   64   67 
LCS_GDT     K      29     K      29      4    6   32     3    4    5    6    8   13   17   20   24   27   30   33   36   43   49   55   57   59   64   69 
LCS_GDT     L      30     L      30      4    6   42     3    4    5    6    8    9   13   13   17   28   32   38   46   51   53   56   61   63   65   69 
LCS_GDT     T      31     T      31      4    6   42     3    4    4    5    8   10   13   15   22   29   35   42   47   51   53   56   61   63   65   69 
LCS_GDT     S      32     S      32      3    6   42     0    3    4    4    6    7    8   10   14   15   30   32   33   41   46   51   55   61   65   68 
LCS_GDT     L      33     L      33      3    6   42     0    3    4    4    6    8   10   11   14   15   23   32   33   40   43   49   51   52   59   65 
LCS_GDT     F      34     F      34      5    6   42     1    4    5    7    9   10   10   14   22   27   34   37   40   41   46   49   54   60   64   67 
LCS_GDT     Q      35     Q      35      5    6   42     2    4    5    6    9   10   10   12   20   24   34   37   40   41   46   49   54   59   64   68 
LCS_GDT     R      36     R      36      5    7   42     3    4    5    7    9   10   13   15   21   29   33   37   43   50   53   56   61   63   65   69 
LCS_GDT     M      37     M      37      5    7   42     3    4    5    7   12   21   25   28   33   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     I      38     I      38      5   29   42     3    4    6   15   25   27   29   32   33   36   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     V      39     V      39      5   29   42     3    4    5    8   15   22   26   31   33   36   38   41   47   51   53   56   61   63   65   69 
LCS_GDT     A      40     A      40      5   29   42     3    4    5    9   23   26   29   31   33   36   38   41   45   48   52   56   61   63   65   69 
LCS_GDT     T      41     T      41      5   29   42     3    4   20   22   25   27   29   32   33   36   38   41   45   48   53   56   61   63   65   69 
LCS_GDT     G      42     G      42      5   29   42     3    4    5    6    8   22   27   31   33   35   37   40   44   47   51   54   59   63   65   69 
LCS_GDT     D      43     D      43     19   29   42     3    9   20   22   25   27   29   32   33   36   38   42   45   48   52   55   59   63   65   69 
LCS_GDT     S      44     S      44     21   29   42    14   18   20   22   25   27   29   34   35   39   43   45   46   51   53   56   61   63   65   69 
LCS_GDT     N      45     N      45     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     R      46     R      46     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     Q      47     Q      47     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     V      48     V      48     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     K      49     K      49     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     A      50     A      50     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     L      51     L      51     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     A      52     A      52     21   29   42    14   18   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     N      53     N      53     21   29   42    14   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     S      54     S      54     21   29   42    14   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     V      55     V      55     21   29   42    14   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     Q      56     Q      56     21   29   42    14   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     V      57     V      57     21   29   42    11   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     K      58     K      58     21   29   42    10   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     L      59     L      59     21   29   42    10   17   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     K      60     K      60     21   29   42    14   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     E      61     E      61     21   29   42     5   14   20   22   25   27   29   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     A      62     A      62     21   29   42     3    5    9   21   24   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     G      63     G      63     21   29   42     3    8   19   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     V      64     V      64     21   29   42     3   17   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     D      65     D      65      6   29   42    10   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     I      66     I      66      5   29   42    13   18   20   22   25   27   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     V      67     V      67      5   27   42     4    5    8   10   22   25   28   30   32   38   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     G      68     G      68      5   27   42     3    5    5   16   21   27   30   32   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     S      69     S      69      5   27   42     3    5   10   13   21   25   30   34   37   39   43   45   47   51   53   56   61   63   65   69 
LCS_GDT     E      70     E      70      5   27   42     3    5   11   16   23   26   30   32   37   39   43   45   46   51   53   56   61   63   65   69 
LCS_GDT     G      71     G      71      5    7   42     3    5    5    8   16   19   26   27   31   33   40   42   44   48   52   55   58   63   65   68 
LCS_GDT     H      72     H      72      3    6   41     3    3    3    4    6   10   12   12   17   17   18   22   28   35   38   44   47   55   59   63 
LCS_GDT     E      73     E      73      3    5   39     3    3    3    5    7   10   12   16   17   17   21   24   30   35   38   41   43   48   52   57 
LCS_GDT     S      74     S      74      4    5   35     3    6    7    8   11   13   19   23   26   30   31   33   35   37   40   43   45   50   55   58 
LCS_GDT     G      75     G      75      4    6   34     3    4    4    6    8   14   20   23   26   30   31   33   35   37   40   43   45   50   55   58 
LCS_GDT     E      76     E      76      4    6   34     3    4    4    5   11   14   20   24   31   33   34   37   38   41   43   48   51   54   58   63 
LCS_GDT     W      77     W      77      4    7   32     3    4    4    8    8   11   12   13   15   25   29   33   36   38   40   48   49   52   58   63 
LCS_GDT     V      78     V      78      4    7   29     0    3    4    8    8   11   12   13   15   17   19   20   25   28   32   39   42   48   52   55 
LCS_GDT     L      79     L      79      4    7   20     3    3    4    8    8   10   12   13   15   17   19   20   25   28   30   35   40   45   47   50 
LCS_GDT     V      80     V      80      4    7   21     3    3    4    6    7   10   13   13   15   17   19   23   27   31   34   39   41   43   47   50 
LCS_GDT     D      81     D      81      4    7   24     3    4    4    6    8   11   12   13   16   21   24   26   28   31   34   39   41   44   47   50 
LCS_GDT     A      82     A      82      4    7   24     3    4    4    8    8   11   12   15   17   21   24   26   28   31   34   39   41   43   47   50 
LCS_GDT     G      83     G      83      4    7   24     3    4    4    6    8   11   13   16   18   19   24   26   28   31   34   39   41   43   47   50 
LCS_GDT     D      84     D      84      4    7   24     3    4    4    8    8   11   12   13   15   17   21   24   28   30   34   39   41   43   47   50 
LCS_GDT     V      85     V      85      4    7   24     3    4    4    5    7   11   12   13   15   17   21   23   26   27   32   36   38   42   46   50 
LCS_GDT     V      86     V      86      3    7   24     3    4    4    8    8   11   12   15   17   19   21   25   28   31   34   39   41   43   47   52 
LCS_GDT     V      87     V      87      3    7   24     3    3    4    8    8   11   12   15   17   21   30   37   40   45   50   52   57   61   65   68 
LCS_GDT     H      88     H      88      5    7   24     4    5    5    8    8   11   12   13   25   29   34   37   43   48   52   55   59   63   65   69 
LCS_GDT     V      89     V      89      5    7   24     4    5    5    7    8   11   12   15   17   21   24   37   40   45   51   54   59   63   65   69 
LCS_GDT     M      90     M      90      5    6   24     4    5    5    7    9   10   11   15   20   30   38   42   45   48   52   55   59   63   65   69 
LCS_GDT     L      91     L      91      5    9   24     4    5    5    7    9   11   12   15   33   35   38   40   44   48   51   54   59   63   65   69 
LCS_GDT     P      92     P      92      8    9   24     6    8    8    8    9   12   16   23   30   34   37   38   40   46   48   52   56   60   65   69 
LCS_GDT     A      93     A      93      8    9   24     6    8    8    8    9   10   12   15   18   21   24   31   38   46   48   50   55   59   63   68 
LCS_GDT     V      94     V      94      8    9   24     6    8    8    8   11   13   16   18   21   26   37   38   39   46   48   52   56   60   65   69 
LCS_GDT     R      95     R      95      8    9   24     6    8    8    8   10   11   13   15   17   21   24   29   38   46   48   51   57   59   65   68 
LCS_GDT     D      96     D      96      8    9   24     6    8    8    8    9   11   14   17   19   21   25   27   32   46   48   50   55   59   62   65 
LCS_GDT     Y      97     Y      97      8    9   24     6    8    8    8    9    9   11   14   19   21   25   26   28   31   34   39   53   59   60   64 
LCS_GDT     Y      98     Y      98      8    9   24     4    8    8    8   11   13   18   19   24   25   30   33   34   36   44   49   55   59   62   65 
LCS_GDT     D      99     D      99      8    9   24     4    8    8    8   12   14   18   21   24   27   30   33   34   36   44   46   47   51   53   63 
LCS_GDT     I     100     I     100      7    8   24     4    6    7    8   12   14   18   21   24   27   30   33   34   37   44   46   47   51   59   63 
LCS_GDT     E     101     E     101      7    8   24     4    6    7    8   11   13   14   16   18   19   24   28   28   31   34   39   43   45   48   52 
LCS_GDT     A     102     A     102      7    8   24     4    6    7    8   10   13   14   16   18   19   24   26   28   31   34   39   41   43   47   50 
LCS_GDT     L     103     L     103      7   11   24     4    6    7    8   11   13   14   16   18   20   24   26   28   31   34   39   41   43   47   50 
LCS_GDT     W     104     W     104      7   11   24     3    6    8    9   11   13   14   16   18   19   24   26   28   31   34   39   41   43   47   50 
LCS_GDT     G     105     G     105      7   11   24     3    5    8    9   11   13   14   16   18   18   23   26   28   31   34   39   41   43   47   50 
LCS_GDT     G     106     G     106      4   11   22     3    4    8    9   11   13   14   16   18   18   23   25   28   29   33   39   41   43   47   50 
LCS_GDT     Q     107     Q     107      4   11   22     3    4    8    9   11   13   14   16   18   18   23   26   28   31   34   39   41   43   47   50 
LCS_GDT     K     108     K     108      5   11   21     3    3    5    6    6    8   11   16   17   17   19   23   26   28   31   34   40   43   47   50 
LCS_GDT     P     109     P     109      5   11   20     3    3    7    9   10   11   13   16   17   18   21   24   26   28   32   37   41   43   47   50 
LCS_GDT     S     110     S     110      5   11   20     4    4    8    9   10   12   14   16   18   18   21   24   28   31   34   39   41   43   47   50 
LCS_GDT     F     111     F     111      5   11   20     4    4    8    9   10   12   14   16   18   18   21   24   28   30   34   39   41   43   47   50 
LCS_GDT     A     112     A     112      5   11   20     4    4    8    9   10   12   14   16   18   18   21   24   28   30   34   39   41   43   47   50 
LCS_GDT     V     113     V     113      4   11   20     4    4    8    9   10   12   14   16   18   18   21   24   28   30   33   36   41   43   47   50 
LCS_GDT     G     114     G     114      4    6   19     3    3    4    6    7    8   10   11   13   15   15   21   24   28   31   34   38   41   45   47 
LCS_GDT     A     115     A     115      4    6   17     3    3    4    6    6    7    8   10   11   13   14   14   15   15   16   19   20   22   29   32 
LCS_GDT     A     116     A     116      4    6   16     3    3    4    6    7    7   10   10   11   13   14   14   15   15   17   21   25   30   38   43 
LCS_GDT     K     117     K     117      3    6   16     3    3    3    6    7    7   10   10   11   13   14   14   15   15   16   17   19   19   24   26 
LCS_GDT     P     118     P     118      3    6   16     3    3    3    4    5    6    8   10   11   13   13   14   15   15   16   17   19   19   24   26 
LCS_GDT     W     119     W     119      3    6   16     3    3    4    6    6    6    8   10   11   13   14   14   15   15   16   17   19   19   24   26 
LCS_GDT     S     120     S     120      3    4   16     3    3    4    4    4    5    7    8    8   12   14   14   15   15   16   17   19   19   24   26 
LCS_GDT     A     121     A     121      3    4   16     3    3    4    4    4    5    6    6    7    9   10   11   11   13   16   17   19   19   24   26 
LCS_GDT     V     122     V     122      3    4    8     3    3    4    4    4    4    5    5    7    7    9    9    9   10   10   10   12   15   16   17 
LCS_AVERAGE  LCS_A:  15.19  (   7.27   12.21   26.08 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     18     20     22     25     27     30     34     37     39     43     45     47     51     53     56     61     63     65     69 
GDT PERCENT_CA  11.48  14.75  16.39  18.03  20.49  22.13  24.59  27.87  30.33  31.97  35.25  36.89  38.52  41.80  43.44  45.90  50.00  51.64  53.28  56.56
GDT RMS_LOCAL    0.24   0.50   0.62   0.93   1.30   1.49   2.34   2.55   2.93   3.04   3.46   3.57   4.34   4.42   4.63   4.94   5.52   5.48   5.93   6.16
GDT RMS_ALL_CA  21.29  19.28  19.30  19.19  19.11  19.07  20.69  19.22  19.57  19.63  19.74  19.83  20.05  19.94  20.04  19.83  20.01  19.60  19.31  19.47

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         10.249
LGA    E       2      E       2          3.238
LGA    I       3      I       3          2.125
LGA    Q       4      Q       4          2.580
LGA    E       5      E       5          2.916
LGA    I       6      I       6          2.232
LGA    S       7      S       7          1.831
LGA    K       8      K       8          3.462
LGA    L       9      L       9          3.206
LGA    A      10      A      10          2.955
LGA    I      11      I      11          3.952
LGA    E      12      E      12          4.857
LGA    A      13      A      13          4.364
LGA    L      14      L      14          4.722
LGA    E      15      E      15          5.679
LGA    D      16      D      16          5.986
LGA    I      17      I      17          9.424
LGA    K      18      K      18          9.375
LGA    G      19      G      19          7.327
LGA    K      20      K      20         11.512
LGA    D      21      D      21         14.698
LGA    I      22      I      22         10.197
LGA    I      23      I      23         10.067
LGA    E      24      E      24         11.934
LGA    L      25      L      25         13.558
LGA    D      26      D      26         15.159
LGA    T      27      T      27         13.643
LGA    S      28      S      28         14.550
LGA    K      29      K      29         13.595
LGA    L      30      L      30          8.834
LGA    T      31      T      31         10.911
LGA    S      32      S      32         14.800
LGA    L      33      L      33         16.990
LGA    F      34      F      34         16.126
LGA    Q      35      Q      35         15.243
LGA    R      36      R      36          9.944
LGA    M      37      M      37          6.661
LGA    I      38      I      38          5.663
LGA    V      39      V      39          8.046
LGA    A      40      A      40          8.804
LGA    T      41      T      41          7.905
LGA    G      42      G      42          9.714
LGA    D      43      D      43          7.304
LGA    S      44      S      44          3.941
LGA    N      45      N      45          3.615
LGA    R      46      R      46          3.545
LGA    Q      47      Q      47          3.564
LGA    V      48      V      48          3.153
LGA    K      49      K      49          2.724
LGA    A      50      A      50          2.460
LGA    L      51      L      51          2.559
LGA    A      52      A      52          2.144
LGA    N      53      N      53          1.762
LGA    S      54      S      54          1.931
LGA    V      55      V      55          2.046
LGA    Q      56      Q      56          1.709
LGA    V      57      V      57          1.691
LGA    K      58      K      58          1.832
LGA    L      59      L      59          1.619
LGA    K      60      K      60          1.925
LGA    E      61      E      61          3.173
LGA    A      62      A      62          2.326
LGA    G      63      G      63          2.465
LGA    V      64      V      64          2.140
LGA    D      65      D      65          2.282
LGA    I      66      I      66          1.821
LGA    V      67      V      67          6.085
LGA    G      68      G      68          4.940
LGA    S      69      S      69          3.828
LGA    E      70      E      70          4.586
LGA    G      71      G      71          7.559
LGA    H      72      H      72         14.206
LGA    E      73      E      73         17.806
LGA    S      74      S      74         16.055
LGA    G      75      G      75         14.750
LGA    E      76      E      76         11.797
LGA    W      77      W      77         13.411
LGA    V      78      V      78         15.380
LGA    L      79      L      79         17.641
LGA    V      80      V      80         20.447
LGA    D      81      D      81         20.438
LGA    A      82      A      82         23.690
LGA    G      83      G      83         26.451
LGA    D      84      D      84         28.150
LGA    V      85      V      85         24.908
LGA    V      86      V      86         18.421
LGA    V      87      V      87         11.739
LGA    H      88      H      88          8.613
LGA    V      89      V      89          7.823
LGA    M      90      M      90          6.909
LGA    L      91      L      91          9.200
LGA    P      92      P      92         13.012
LGA    A      93      A      93         12.586
LGA    V      94      V      94         12.929
LGA    R      95      R      95         15.714
LGA    D      96      D      96         17.163
LGA    Y      97      Y      97         18.345
LGA    Y      98      Y      98         19.735
LGA    D      99      D      99         22.332
LGA    I     100      I     100         19.803
LGA    E     101      E     101         23.550
LGA    A     102      A     102         29.928
LGA    L     103      L     103         28.916
LGA    W     104      W     104         27.422
LGA    G     105      G     105         32.492
LGA    G     106      G     106         30.626
LGA    Q     107      Q     107         32.877
LGA    K     108      K     108         33.287
LGA    P     109      P     109         34.137
LGA    S     110      S     110         35.776
LGA    F     111      F     111         33.470
LGA    A     112      A     112         37.290
LGA    V     113      V     113         38.355
LGA    G     114      G     114         40.511
LGA    A     115      A     115         40.770
LGA    A     116      A     116         44.648
LGA    K     117      K     117         45.565
LGA    P     118      P     118         45.227
LGA    W     119      W     119         44.837
LGA    S     120      S     120         50.825
LGA    A     121      A     121         53.608
LGA    V     122      V     122         58.409

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     34    2.55    26.639    23.217     1.282

LGA_LOCAL      RMSD =  2.553  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.625  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 16.720  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.236252 * X  +  -0.956415 * Y  +   0.171627 * Z  +  43.128948
  Y_new =  -0.961969 * X  +  -0.255134 * Y  +  -0.097582 * Z  +  30.959311
  Z_new =   0.137117 * X  +  -0.142046 * Y  +  -0.980317 * Z  +  22.431112 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.997696    0.143896  [ DEG:  -171.7554      8.2446 ]
  Theta =  -0.137550   -3.004043  [ DEG:    -7.8810   -172.1190 ]
  Phi   =  -1.329971    1.811622  [ DEG:   -76.2017    103.7983 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS393_4                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS393_4.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   34   2.55  23.217    16.72
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS393_4
PFRMAT TS
TARGET T0354
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      51.905  20.011  10.545  1.00 25.00           C
ATOM      2  CA  GLU     2      53.214  21.435  13.847  1.00 25.00           C
ATOM      3  CA  ILE     3      49.835  21.609  15.587  1.00 25.00           C
ATOM      4  CA  GLN     4      50.462  18.517  17.758  1.00 25.00           C
ATOM      5  CA  GLU     5      53.627  20.132  19.188  1.00 25.00           C
ATOM      6  CA  ILE     6      51.670  23.330  19.970  1.00 25.00           C
ATOM      7  CA  SER     7      48.955  21.270  21.717  1.00 25.00           C
ATOM      8  CA  LYS     8      51.625  19.455  23.778  1.00 25.00           C
ATOM      9  CA  LEU     9      53.183  22.811  24.764  1.00 25.00           C
ATOM     10  CA  ALA    10      49.743  24.130  25.811  1.00 25.00           C
ATOM     11  CA  ILE    11      49.150  20.982  27.911  1.00 25.00           C
ATOM     12  CA  GLU    12      52.566  21.425  29.584  1.00 25.00           C
ATOM     13  CA  ALA    13      51.742  25.085  30.352  1.00 25.00           C
ATOM     14  CA  LEU    14      48.382  24.038  31.862  1.00 25.00           C
ATOM     15  CA  GLU    15      50.143  21.408  34.019  1.00 25.00           C
ATOM     16  CA  ASP    16      52.662  24.035  35.209  1.00 25.00           C
ATOM     17  CA  ILE    17      53.714  27.630  35.288  1.00 25.00           C
ATOM     18  CA  LYS    18      50.937  30.089  36.042  1.00 25.00           C
ATOM     19  CA  GLY    19      47.351  28.767  35.773  1.00 25.00           C
ATOM     20  CA  LYS    20      46.521  29.633  39.402  1.00 25.00           C
ATOM     21  CA  ASP    21      44.010  32.286  38.151  1.00 25.00           C
ATOM     22  CA  ILE    22      42.370  29.748  35.827  1.00 25.00           C
ATOM     23  CA  ILE    23      42.490  26.650  33.620  1.00 25.00           C
ATOM     24  CA  GLU    24      40.992  28.754  30.857  1.00 25.00           C
ATOM     25  CA  LEU    25      37.552  28.699  29.200  1.00 25.00           C
ATOM     26  CA  ASP    26      34.980  27.894  26.535  1.00 25.00           C
ATOM     27  CA  THR    27      34.436  29.104  22.951  1.00 25.00           C
ATOM     28  CA  SER    28      35.116  29.104  19.160  1.00 25.00           C
ATOM     29  CA  LYS    29      36.630  28.301  15.726  1.00 25.00           C
ATOM     30  CA  LEU    30      37.075  24.727  16.983  1.00 25.00           C
ATOM     31  CA  THR    31      35.070  23.810  20.130  1.00 25.00           C
ATOM     32  CA  SER    32      37.319  22.289  22.793  1.00 25.00           C
ATOM     33  CA  LEU    33      37.451  21.789  26.570  1.00 25.00           C
ATOM     34  CA  PHE    34      39.925  19.668  28.478  1.00 25.00           C
ATOM     35  CA  GLN    35      42.612  22.107  29.473  1.00 25.00           C
ATOM     36  CA  ARG    36      44.274  24.757  27.332  1.00 25.00           C
ATOM     37  CA  MET    37      40.854  25.923  26.253  1.00 25.00           C
ATOM     38  CA  ILE    38      39.449  29.053  24.519  1.00 25.00           C
ATOM     39  CA  VAL    39      37.748  32.325  25.581  1.00 25.00           C
ATOM     40  CA  ALA    40      34.943  33.256  27.976  1.00 25.00           C
ATOM     41  CA  THR    41      32.424  33.742  30.824  1.00 25.00           C
ATOM     42  CA  GLY    42      29.679  36.347  31.263  1.00 25.00           C
ATOM     43  CA  ASP    43      29.359  35.429  34.911  1.00 25.00           C
ATOM     44  CA  SER    44      32.032  37.579  36.666  1.00 25.00           C
ATOM     45  CA  ASN    45      33.550  40.168  34.339  1.00 25.00           C
ATOM     46  CA  ARG    46      36.696  40.745  36.445  1.00 25.00           C
ATOM     47  CA  GLN    47      37.162  36.963  36.829  1.00 25.00           C
ATOM     48  CA  VAL    48      36.785  36.508  33.045  1.00 25.00           C
ATOM     49  CA  LYS    49      39.381  39.255  32.431  1.00 25.00           C
ATOM     50  CA  ALA    50      41.788  37.564  34.883  1.00 25.00           C
ATOM     51  CA  LEU    51      41.286  34.212  33.101  1.00 25.00           C
ATOM     52  CA  ALA    52      41.985  35.875  29.724  1.00 25.00           C
ATOM     53  CA  ASN    53      45.174  37.458  31.134  1.00 25.00           C
ATOM     54  CA  SER    54      46.299  34.052  32.478  1.00 25.00           C
ATOM     55  CA  VAL    55      45.650  32.460  29.057  1.00 25.00           C
ATOM     56  CA  GLN    56      47.682  35.227  27.357  1.00 25.00           C
ATOM     57  CA  VAL    57      50.556  34.666  29.825  1.00 25.00           C
ATOM     58  CA  LYS    58      50.457  30.902  29.123  1.00 25.00           C
ATOM     59  CA  LEU    59      50.548  31.578  25.355  1.00 25.00           C
ATOM     60  CA  LYS    60      53.547  33.914  25.821  1.00 25.00           C
ATOM     61  CA  GLU    61      55.346  31.235  27.883  1.00 25.00           C
ATOM     62  CA  ALA    62      58.559  30.191  26.129  1.00 25.00           C
ATOM     63  CA  GLY    63      58.325  32.763  23.268  1.00 25.00           C
ATOM     64  CA  VAL    64      55.096  32.090  21.361  1.00 25.00           C
ATOM     65  CA  ASP    65      51.730  33.358  20.178  1.00 25.00           C
ATOM     66  CA  ILE    66      48.154  34.546  20.589  1.00 25.00           C
ATOM     67  CA  VAL    67      44.590  34.962  21.813  1.00 25.00           C
ATOM     68  CA  GLY    68      41.313  33.648  20.457  1.00 25.00           C
ATOM     69  CA  SER    69      38.210  35.766  19.809  1.00 25.00           C
ATOM     70  CA  GLU    70      35.263  34.169  21.550  1.00 25.00           C
ATOM     71  CA  GLY    71      31.733  33.027  20.513  1.00 25.00           C
ATOM     72  CA  HIS    72      28.279  32.224  19.173  1.00 25.00           C
ATOM     73  CA  GLU    73      25.217  30.402  20.610  1.00 25.00           C
ATOM     74  CA  SER    74      27.166  27.749  22.597  1.00 25.00           C
ATOM     75  CA  GLY    75      29.904  25.452  23.803  1.00 25.00           C
ATOM     76  CA  GLU    76      27.489  24.683  26.676  1.00 25.00           C
ATOM     77  CA  TRP    77      28.603  21.096  26.343  1.00 25.00           C
ATOM     78  CA  VAL    78      30.002  21.267  29.858  1.00 25.00           C
ATOM     79  CA  LEU    79      31.104  21.076  33.511  1.00 25.00           C
ATOM     80  CA  VAL    80      33.571  20.740  36.429  1.00 25.00           C
ATOM     81  CA  ASP    81      36.926  22.419  35.661  1.00 25.00           C
ATOM     82  CA  ALA    82      37.208  23.625  39.261  1.00 25.00           C
ATOM     83  CA  GLY    83      38.406  27.192  39.925  1.00 25.00           C
ATOM     84  CA  ASP    84      35.945  30.137  40.333  1.00 25.00           C
ATOM     85  CA  VAL    85      32.889  27.967  39.592  1.00 25.00           C
ATOM     86  CA  VAL    86      33.359  28.299  35.813  1.00 25.00           C
ATOM     87  CA  VAL    87      33.500  26.933  32.266  1.00 25.00           C
ATOM     88  CA  HIS    88      30.733  27.214  29.671  1.00 25.00           C
ATOM     89  CA  VAL    89      29.421  29.776  27.230  1.00 25.00           C
ATOM     90  CA  MET    90      27.371  32.883  27.757  1.00 25.00           C
ATOM     91  CA  LEU    91      26.883  36.605  26.894  1.00 25.00           C
ATOM     92  CA  PRO    92      29.844  38.915  27.082  1.00 25.00           C
ATOM     93  CA  ALA    93      31.997  36.879  24.655  1.00 25.00           C
ATOM     94  CA  VAL    94      32.983  40.083  22.803  1.00 25.00           C
ATOM     95  CA  ARG    95      33.923  41.742  26.125  1.00 25.00           C
ATOM     96  CA  ASP    96      36.044  38.697  27.072  1.00 25.00           C
ATOM     97  CA  TYR    97      37.801  38.831  23.673  1.00 25.00           C
ATOM     98  CA  TYR    98      38.504  42.565  24.156  1.00 25.00           C
ATOM     99  CA  ASP    99      39.936  41.870  27.638  1.00 25.00           C
ATOM    100  CA  ILE   100      42.171  39.113  26.197  1.00 25.00           C
ATOM    101  CA  GLU   101      43.396  41.501  23.465  1.00 25.00           C
ATOM    102  CA  ALA   102      44.171  44.165  26.106  1.00 25.00           C
ATOM    103  CA  LEU   103      46.110  41.587  28.171  1.00 25.00           C
ATOM    104  CA  TRP   104      48.096  40.555  25.063  1.00 25.00           C
ATOM    105  CA  GLY   105      48.146  43.472  22.629  1.00 25.00           C
ATOM    106  CA  GLY   106      50.406  41.451  20.307  1.00 25.00           C
ATOM    107  CA  GLN   107      48.481  41.841  17.129  1.00 25.00           C
ATOM    108  CA  LYS   108      47.371  43.789  14.087  1.00 25.00           C
ATOM    109  CA  PRO   109      47.757  40.747  11.873  1.00 25.00           C
ATOM    110  CA  SER   110      45.380  38.402   9.988  1.00 25.00           C
ATOM    111  CA  PHE   111      43.116  35.494   9.095  1.00 25.00           C
ATOM    112  CA  ALA   112      40.365  35.596   6.470  1.00 25.00           C
ATOM    113  CA  VAL   113      39.655  32.460   4.542  1.00 25.00           C
ATOM    114  CA  GLY   114      41.092  30.943   1.420  1.00 25.00           C
ATOM    115  CA  ALA   115      41.198  31.056  -2.378  1.00 25.00           C
ATOM    116  CA  ALA   116      44.395  33.047  -2.899  1.00 25.00           C
ATOM    117  CA  LYS   117      47.323  34.999  -4.370  1.00 25.00           C
ATOM    118  CA  PRO   118      47.820  33.465  -7.752  1.00 25.00           C
ATOM    119  CA  TRP   119      49.709  30.181  -7.562  1.00 25.00           C
ATOM    120  CA  SER   120      51.911  27.868  -9.697  1.00 25.00           C
ATOM    121  CA  ALA   121      55.353  29.581  -9.549  1.00 25.00           C
ATOM    122  CA  VAL   122      58.474  30.146 -11.645  1.00 25.00           C
ATOM    123  CA  LEU   123      60.654  32.800 -10.016  1.00 25.00           C
ATOM    124  CA  GLU   124      62.511  31.816  -6.815  1.00 25.00           C
ATOM    125  CA  HIS   125      60.134  28.855  -6.317  1.00 25.00           C
ATOM    126  CA  HIS   126      59.980  28.272  -2.591  1.00 25.00           C
ATOM    127  CA  HIS   127      63.754  28.524  -2.277  1.00 25.00           C
ATOM    128  CA  HIS   128      66.170  29.921   0.307  1.00 25.00           C
ATOM    129  CA  HIS   129      64.984  31.727   3.422  1.00 25.00           C
ATOM    130  CA  HIS   130      62.495  30.184   5.898  1.00 25.00           C
TER
END
