
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS393_5
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS393_5.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        30 - 70          5.00    18.55
  LONGEST_CONTINUOUS_SEGMENT:    41        31 - 71          4.84    18.59
  LCS_AVERAGE:     25.77

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        39 - 65          1.97    17.87
  LCS_AVERAGE:     11.35

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        44 - 64          0.92    17.43
  LCS_AVERAGE:      7.33

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      4   17   31     3    3    4    5    8   11   20   20   23   27   30   36   42   50   52   55   58   62   65   68 
LCS_GDT     E       2     E       2     15   17   31     3    3   12   16   23   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     I       3     I       3     15   17   31     7   16   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     Q       4     Q       4     15   17   31    13   14   18   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     E       5     E       5     15   17   31    13   14   18   20   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     I       6     I       6     15   17   31    13   14   18   20   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     S       7     S       7     15   17   31    13   14   18   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     K       8     K       8     15   17   31    13   14   18   20   23   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     L       9     L       9     15   17   31    13   14   18   20   23   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     A      10     A      10     15   17   31    13   14   18   20   23   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     I      11     I      11     15   17   31    13   14   18   20   23   26   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     E      12     E      12     15   17   31    13   14   18   20   23   25   27   33   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     A      13     A      13     15   17   31    13   14   18   20   23   25   27   31   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     L      14     L      14     15   17   31    13   14   18   20   23   25   27   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     E      15     E      15     15   17   31    13   14   18   20   22   25   27   30   35   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     D      16     D      16     15   17   31    13   14   18   20   22   25   27   29   31   35   42   44   46   50   52   55   58   62   65   68 
LCS_GDT     I      17     I      17      3   17   31     3    3    7   16   18   25   26   29   31   34   38   42   45   48   50   54   58   62   65   68 
LCS_GDT     K      18     K      18      3   17   31     3    3    4    5    8   13   20   20   22   36   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     G      19     G      19      3    6   31     0    3    4    5   11   16   20   20   22   28   35   41   45   50   52   55   58   62   65   68 
LCS_GDT     K      20     K      20      3    5   31     3    3    4    6    7   13   14   19   23   27   30   31   38   45   50   54   58   62   65   68 
LCS_GDT     D      21     D      21      3   10   31     3    3    4    6    9   10   14   18   23   27   30   36   40   46   50   54   58   62   65   68 
LCS_GDT     I      22     I      22      3   10   31     3    3    5    8    9   10   15   20   26   31   34   37   44   47   52   55   58   62   65   68 
LCS_GDT     I      23     I      23      4   10   31     3    4    5    8    9   10   15   18   23   27   33   37   43   47   51   55   58   62   65   68 
LCS_GDT     E      24     E      24      4   10   31     3    4    5    8    9   11   12   18   23   27   30   31   38   45   50   55   58   62   65   68 
LCS_GDT     L      25     L      25      4   10   31     3    5    6    8    9   11   14   18   23   27   30   31   33   40   47   51   56   62   63   68 
LCS_GDT     D      26     D      26      4   10   31     3    4    4    8    9   10   13   18   23   27   30   31   33   40   47   53   58   62   65   68 
LCS_GDT     T      27     T      27      3   10   31     3    3    4    8    9   11   14   18   23   27   30   32   40   46   52   55   58   62   65   68 
LCS_GDT     S      28     S      28      4   10   31     3    3    5    8    9   11   14   18   23   27   30   32   37   46   52   55   58   62   65   68 
LCS_GDT     K      29     K      29      4   10   31     3    3    5    8    9   11   14   17   22   27   30   32   40   46   52   55   58   62   65   68 
LCS_GDT     L      30     L      30      4   10   41     3    4    4    8    9   10   13   18   25   31   35   41   44   47   52   55   58   62   65   68 
LCS_GDT     T      31     T      31      4    5   41     3    4    4    5    6    7   11   22   24   26   31   36   38   45   50   54   58   62   65   68 
LCS_GDT     S      32     S      32      4    5   41     3    4    4    5    5    6    8   11   13   14   18   27   37   40   48   52   55   62   65   67 
LCS_GDT     L      33     L      33      4    5   41     3    4    5    5    5    6    9   11   13   20   27   33   40   43   46   48   55   57   61   65 
LCS_GDT     F      34     F      34      4    6   41     3    3    4    5    6   10   10   12   15   24   28   36   40   43   46   48   50   54   61   65 
LCS_GDT     Q      35     Q      35      4    6   41     3    3    4    5    8   10   13   15   17   24   32   37   40   43   46   48   50   54   61   65 
LCS_GDT     R      36     R      36      4    7   41     3    4    6   11   15   22   25   29   30   35   39   42   45   48   52   55   58   62   65   68 
LCS_GDT     M      37     M      37      4    7   41     2    4    7   12   18   22   25   29   33   36   41   44   47   50   52   55   58   62   65   68 
LCS_GDT     I      38     I      38      4    7   41     1    4    5    6   13   22   26   31   35   38   41   44   47   50   52   55   58   62   65   68 
LCS_GDT     V      39     V      39      4   27   41     3    4   16   20   24   26   30   32   36   38   39   43   47   50   52   55   58   62   65   68 
LCS_GDT     A      40     A      40      4   27   41     3    3    5   15   23   25   28   31   36   37   39   42   46   50   52   55   58   62   65   68 
LCS_GDT     T      41     T      41      4   27   41     3    3    5    9   23   25   28   31   36   37   39   42   45   48   52   55   58   62   65   68 
LCS_GDT     G      42     G      42      4   27   41     3    3    5    6    7   11   16   28   29   34   38   41   45   48   50   55   58   62   65   68 
LCS_GDT     D      43     D      43     19   27   41     3    3   12   20   24   27   30   33   36   38   40   43   47   50   52   55   58   62   65   68 
LCS_GDT     S      44     S      44     21   27   41     3   15   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     N      45     N      45     21   27   41    10   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     R      46     R      46     21   27   41     7   17   21   22   26   28   33   34   37   38   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     Q      47     Q      47     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     V      48     V      48     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     K      49     K      49     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     A      50     A      50     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     L      51     L      51     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     A      52     A      52     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     N      53     N      53     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     S      54     S      54     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     V      55     V      55     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     Q      56     Q      56     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     V      57     V      57     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     K      58     K      58     21   27   41     9   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     L      59     L      59     21   27   41     9   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     K      60     K      60     21   27   41    12   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     E      61     E      61     21   27   41     7   17   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     A      62     A      62     21   27   41     3    5   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     G      63     G      63     21   27   41     4   10   18   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     V      64     V      64     21   27   41     6   16   21   22   26   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     D      65     D      65      6   27   41     4   12   18   20   23   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     I      66     I      66      6   25   41     5   12   18   20   23   28   33   34   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     V      67     V      67      5   25   41     3    4    9   16   20   25   27   29   33   36   41   44   47   50   52   55   58   62   65   68 
LCS_GDT     G      68     G      68      5   25   41     3    4   12   19   22   25   27   31   37   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     S      69     S      69      5   25   41     3    4    5   10   16   25   27   30   36   39   42   44   47   50   52   55   58   62   65   68 
LCS_GDT     E      70     E      70      5    7   41     3    4    5    7   14   25   27   29   36   39   42   43   47   50   52   55   58   62   65   67 
LCS_GDT     G      71     G      71      5    7   41     0    4    5   10   14   22   27   29   36   38   40   42   45   48   52   55   58   62   65   67 
LCS_GDT     H      72     H      72      4    6   40     3    4    5    6    7    9   15   16   22   27   32   35   36   40   42   45   49   51   57   61 
LCS_GDT     E      73     E      73      4    6   38     3    4    5    7    8   10   11   12   17   18   24   25   31   35   39   41   46   50   53   56 
LCS_GDT     S      74     S      74      4    7   33     4    5    5    7    9   10   11   15   18   21   25   31   35   37   39   42   44   50   53   54 
LCS_GDT     G      75     G      75      4    7   33     4    4    5    8    9   11   19   22   28   30   33   35   37   40   42   45   49   51   56   60 
LCS_GDT     E      76     E      76      4    7   27     4    4    5    6    7   13   19   24   28   30   33   36   38   41   43   45   49   53   56   60 
LCS_GDT     W      77     W      77      4    7   27     4    4    5    6    9   11   15   19   23   30   33   36   38   41   44   46   49   51   56   61 
LCS_GDT     V      78     V      78      3    7   25     1    3    4    5    8   11   12   15   17   18   20   24   29   35   39   42   46   52   55   58 
LCS_GDT     L      79     L      79      3    8   25     3    3    5    7    9   11   12   15   17   18   19   22   26   30   34   38   43   46   50   52 
LCS_GDT     V      80     V      80      3    8   26     3    3    5    7    9   11   12   15   17   22   23   26   29   31   34   38   43   46   49   52 
LCS_GDT     D      81     D      81      3    8   26     3    3    5    7    9   11   13   15   19   23   24   26   29   31   34   38   43   46   49   52 
LCS_GDT     A      82     A      82      7    8   26     3    5    7    8    9   11   14   16   19   23   25   26   29   31   34   38   43   46   49   52 
LCS_GDT     G      83     G      83      7    8   26     3    5    7    8    9   11   12   15   17   23   25   26   29   31   34   38   43   46   49   52 
LCS_GDT     D      84     D      84      7    8   26     3    5    7    8    9   11   12   15   17   23   25   26   29   31   34   38   43   46   49   52 
LCS_GDT     V      85     V      85      7    8   26     3    5    7    8    9   11   14   17   19   23   25   26   29   31   34   38   43   46   50   52 
LCS_GDT     V      86     V      86      7    8   26     3    5    7    8    9   11   14   17   19   23   25   26   29   31   34   38   46   48   51   55 
LCS_GDT     V      87     V      87      7    8   26     3    5    7    8    9   11   14   17   19   23   32   37   40   43   46   50   56   60   65   67 
LCS_GDT     H      88     H      88      7    8   26     3    5    7    8    9   11   13   15   26   32   35   42   45   48   52   55   58   62   65   68 
LCS_GDT     V      89     V      89      4    6   26     3    4    4    6    9   11   14   17   19   23   32   37   40   43   52   53   58   62   65   67 
LCS_GDT     M      90     M      90      4    6   26     3    4    5    6    9   11   14   17   22   33   37   43   47   50   52   55   58   62   65   68 
LCS_GDT     L      91     L      91      4    9   26     3    4    5    6    9   11   14   17   27   34   38   42   45   48   52   55   58   60   64   67 
LCS_GDT     P      92     P      92      8    9   26     6    8    8    9   11   12   16   27   29   36   38   42   45   48   52   55   58   62   65   68 
LCS_GDT     A      93     A      93      8    9   26     6    8    8    8    9   13   23   28   36   37   38   42   45   48   50   55   58   62   65   68 
LCS_GDT     V      94     V      94      8    9   26     6    8    8    9   11   13   23   28   36   37   38   42   45   48   52   55   58   62   65   68 
LCS_GDT     R      95     R      95      8    9   26     6    8    8    8    9   10   12   17   19   28   34   37   44   47   52   55   58   62   65   68 
LCS_GDT     D      96     D      96      8    9   26     6    8    9   10   12   15   17   20   22   23   27   34   42   45   52   55   58   62   65   68 
LCS_GDT     Y      97     Y      97      8    9   26     6    8    8    8    9   10   11   16   19   23   29   34   38   45   48   52   54   62   65   68 
LCS_GDT     Y      98     Y      98      8    9   26     4    8    9   10   12   15   17   20   22   23   27   34   41   45   50   54   58   62   65   68 
LCS_GDT     D      99     D      99      8    9   26     4    8    8    8   11   16   20   20   22   27   30   31   33   38   47   51   52   60   63   64 
LCS_GDT     I     100     I     100      7    8   26     4    6    7    8    9   11   20   20   23   27   30   31   34   43   48   54   58   62   65   68 
LCS_GDT     E     101     E     101      7    8   26     4    6    7    8    9   11   13   16   17   24   26   29   33   34   35   43   52   56   58   62 
LCS_GDT     A     102     A     102      7    8   26     4    6    7    8    9   13   17   20   22   23   26   29   33   34   35   38   43   46   49   52 
LCS_GDT     L     103     L     103      7    8   26     4    6    7    8    9   11   14   17   19   23   25   31   33   34   35   38   43   46   49   52 
LCS_GDT     W     104     W     104      7    9   26     3    6    7    8    9   13   17   20   22   23   26   27   33   34   35   38   43   46   49   52 
LCS_GDT     G     105     G     105      7    9   26     3    5    7    8    9   11   13   16   18   20   23   25   29   31   34   38   43   46   49   52 
LCS_GDT     G     106     G     106      5    9   25     3    5    6    8    9   11   13   16   17   19   20   23   26   30   34   38   43   46   49   52 
LCS_GDT     Q     107     Q     107      5    9   23     3    5    6    7    9   10   11   16   17   18   20   23   26   30   34   38   43   46   49   52 
LCS_GDT     K     108     K     108      5    9   22     3    5    5    6    6    9   11   13   14   15   19   20   23   25   34   38   42   46   49   52 
LCS_GDT     P     109     P     109      4    9   19     3    4    6    7    9   10   11   13   14   15   19   21   23   28   34   38   43   46   49   52 
LCS_GDT     S     110     S     110      4    9   18     3    5    5    8    9   10   11   13   16   18   21   25   29   31   34   38   43   46   49   52 
LCS_GDT     F     111     F     111      4    9   18     3    5    6    8    9   10   11   14   16   18   21   25   29   31   34   38   43   46   49   52 
LCS_GDT     A     112     A     112      4    9   18     3    3    6    6    9   10   11   14   17   18   21   25   29   31   34   38   42   46   49   52 
LCS_GDT     V     113     V     113      3    7   18     3    5    6    8    9   10   11   14   16   18   21   24   29   31   34   38   42   46   49   52 
LCS_GDT     G     114     G     114      3    7   18     3    3    4    6    6    8    9   10   13   15   20   22   28   30   34   38   42   46   48   52 
LCS_GDT     A     115     A     115      3    5   16     3    3    3    4    5    7    8    8   11   14   17   18   21   22   23   32   37   40   46   47 
LCS_GDT     A     116     A     116      3    5   15     3    3    4    5    6    8    8   10   13   14   17   18   21   26   31   34   39   43   46   49 
LCS_GDT     K     117     K     117      3    5   15     3    3    3    5    6    8    8   10   13   14   17   18   21   22   23   25   26   39   41   44 
LCS_GDT     P     118     P     118      3    4   13     3    3    3    4    5    8    8   10   13   14   16   18   21   22   23   25   26   29   31   32 
LCS_GDT     W     119     W     119      4    4   13     4    4    5    5    6    8    8   10   13   14   16   18   21   22   23   24   26   29   30   30 
LCS_GDT     S     120     S     120      4    4   13     4    4    5    5    5    8    8   10   13   14   16   18   21   22   23   25   26   29   30   30 
LCS_GDT     A     121     A     121      4    4   13     4    4    5    5    5    6    8   10   12   14   15   16   20   22   23   24   25   29   30   30 
LCS_GDT     V     122     V     122      4    4   13     4    4    5    5    5    6    8    8    9   10   15   16   17   19   19   23   24   24   26   29 
LCS_AVERAGE  LCS_A:  14.82  (   7.33   11.35   25.77 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     21     22     26     28     33     34     37     39     42     44     47     50     52     55     58     62     65     68 
GDT PERCENT_CA  10.66  13.93  17.21  18.03  21.31  22.95  27.05  27.87  30.33  31.97  34.43  36.07  38.52  40.98  42.62  45.08  47.54  50.82  53.28  55.74
GDT RMS_LOCAL    0.21   0.55   0.86   0.97   1.40   1.66   2.16   2.29   2.65   2.96   3.17   3.41   3.72   3.97   4.18   4.51   4.81   5.52   5.76   6.15
GDT RMS_ALL_CA  18.07  17.33  17.32  17.38  17.30  17.39  17.42  17.45  17.60  17.83  17.85  17.99  17.79  17.86  17.88  17.92  17.81  18.26  18.37  18.13

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          7.545
LGA    E       2      E       2          3.315
LGA    I       3      I       3          2.012
LGA    Q       4      Q       4          2.149
LGA    E       5      E       5          1.759
LGA    I       6      I       6          1.654
LGA    S       7      S       7          1.206
LGA    K       8      K       8          2.569
LGA    L       9      L       9          2.918
LGA    A      10      A      10          2.729
LGA    I      11      I      11          2.971
LGA    E      12      E      12          4.157
LGA    A      13      A      13          4.363
LGA    L      14      L      14          3.805
LGA    E      15      E      15          4.844
LGA    D      16      D      16          5.953
LGA    I      17      I      17          7.604
LGA    K      18      K      18          5.544
LGA    G      19      G      19          6.757
LGA    K      20      K      20         11.959
LGA    D      21      D      21         12.337
LGA    I      22      I      22         11.745
LGA    I      23      I      23         11.519
LGA    E      24      E      24         11.934
LGA    L      25      L      25         15.250
LGA    D      26      D      26         14.975
LGA    T      27      T      27         12.508
LGA    S      28      S      28         13.370
LGA    K      29      K      29         14.283
LGA    L      30      L      30         10.698
LGA    T      31      T      31         13.164
LGA    S      32      S      32         13.981
LGA    L      33      L      33         16.060
LGA    F      34      F      34         16.873
LGA    Q      35      Q      35         16.634
LGA    R      36      R      36          9.227
LGA    M      37      M      37          7.333
LGA    I      38      I      38          6.713
LGA    V      39      V      39          7.538
LGA    A      40      A      40          8.831
LGA    T      41      T      41          9.924
LGA    G      42      G      42         10.728
LGA    D      43      D      43          7.223
LGA    S      44      S      44          3.514
LGA    N      45      N      45          3.521
LGA    R      46      R      46          3.936
LGA    Q      47      Q      47          3.646
LGA    V      48      V      48          3.125
LGA    K      49      K      49          3.006
LGA    A      50      A      50          2.891
LGA    L      51      L      51          2.760
LGA    A      52      A      52          2.441
LGA    N      53      N      53          2.332
LGA    S      54      S      54          2.252
LGA    V      55      V      55          2.092
LGA    Q      56      Q      56          2.112
LGA    V      57      V      57          1.665
LGA    K      58      K      58          1.046
LGA    L      59      L      59          1.654
LGA    K      60      K      60          2.111
LGA    E      61      E      61          1.685
LGA    A      62      A      62          1.522
LGA    G      63      G      63          1.120
LGA    V      64      V      64          0.892
LGA    D      65      D      65          2.823
LGA    I      66      I      66          2.943
LGA    V      67      V      67          6.045
LGA    G      68      G      68          4.566
LGA    S      69      S      69          5.108
LGA    E      70      E      70          5.348
LGA    G      71      G      71          7.082
LGA    H      72      H      72         13.680
LGA    E      73      E      73         18.020
LGA    S      74      S      74         18.438
LGA    G      75      G      75         14.301
LGA    E      76      E      76         13.195
LGA    W      77      W      77         12.217
LGA    V      78      V      78         13.440
LGA    L      79      L      79         16.342
LGA    V      80      V      80         20.167
LGA    D      81      D      81         24.488
LGA    A      82      A      82         25.554
LGA    G      83      G      83         29.215
LGA    D      84      D      84         26.909
LGA    V      85      V      85         20.889
LGA    V      86      V      86         17.047
LGA    V      87      V      87         11.868
LGA    H      88      H      88          8.128
LGA    V      89      V      89          9.186
LGA    M      90      M      90          7.416
LGA    L      91      L      91         10.188
LGA    P      92      P      92         14.471
LGA    A      93      A      93         14.058
LGA    V      94      V      94         14.477
LGA    R      95      R      95         16.527
LGA    D      96      D      96         17.147
LGA    Y      97      Y      97         18.435
LGA    Y      98      Y      98         19.958
LGA    D      99      D      99         21.481
LGA    I     100      I     100         18.528
LGA    E     101      E     101         23.564
LGA    A     102      A     102         29.055
LGA    L     103      L     103         26.633
LGA    W     104      W     104         25.672
LGA    G     105      G     105         31.853
LGA    G     106      G     106         29.360
LGA    Q     107      Q     107         33.187
LGA    K     108      K     108         31.352
LGA    P     109      P     109         32.720
LGA    S     110      S     110         33.144
LGA    F     111      F     111         31.196
LGA    A     112      A     112         32.833
LGA    V     113      V     113         36.625
LGA    G     114      G     114         38.143
LGA    A     115      A     115         36.760
LGA    A     116      A     116         36.082
LGA    K     117      K     117         35.702
LGA    P     118      P     118         31.738
LGA    W     119      W     119         33.942
LGA    S     120      S     120         40.702
LGA    A     121      A     121         44.417
LGA    V     122      V     122         45.823

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     34    2.29    26.230    23.090     1.424

LGA_LOCAL      RMSD =  2.288  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.831  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 15.651  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.122918 * X  +  -0.992115 * Y  +   0.024470 * Z  +  39.922127
  Y_new =  -0.992230 * X  +  -0.123336 * Y  +  -0.016358 * Z  +  28.992783
  Z_new =   0.019247 * X  +  -0.022269 * Y  +  -0.999567 * Z  +  23.186230 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.119318    0.022275  [ DEG:  -178.7237      1.2763 ]
  Theta =  -0.019248   -3.122344  [ DEG:    -1.1028   -178.8972 ]
  Phi   =  -1.447543    1.694049  [ DEG:   -82.9381     97.0619 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS393_5                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS393_5.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   34   2.29  23.090    15.65
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS393_5
PFRMAT TS
TARGET T0354
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      55.516  17.865  13.994  1.00 25.00           C
ATOM      2  CA  GLU     2      53.132  20.792  13.805  1.00 25.00           C
ATOM      3  CA  ILE     3      51.742  22.670  16.780  1.00 25.00           C
ATOM      4  CA  GLN     4      50.831  19.276  18.303  1.00 25.00           C
ATOM      5  CA  GLU     5      53.663  19.635  20.857  1.00 25.00           C
ATOM      6  CA  ILE     6      52.433  23.147  21.763  1.00 25.00           C
ATOM      7  CA  SER     7      48.872  21.810  22.211  1.00 25.00           C
ATOM      8  CA  LYS     8      50.183  19.006  24.466  1.00 25.00           C
ATOM      9  CA  LEU     9      52.132  21.559  26.551  1.00 25.00           C
ATOM     10  CA  ALA    10      48.989  23.720  26.889  1.00 25.00           C
ATOM     11  CA  ILE    11      46.974  20.659  28.003  1.00 25.00           C
ATOM     12  CA  GLU    12      49.661  19.803  30.595  1.00 25.00           C
ATOM     13  CA  ALA    13      49.586  23.404  31.898  1.00 25.00           C
ATOM     14  CA  LEU    14      45.768  23.252  32.170  1.00 25.00           C
ATOM     15  CA  GLU    15      46.013  19.946  34.090  1.00 25.00           C
ATOM     16  CA  ASP    16      48.589  21.489  36.467  1.00 25.00           C
ATOM     17  CA  ILE    17      50.631  24.655  37.038  1.00 25.00           C
ATOM     18  CA  LYS    18      47.532  26.431  35.660  1.00 25.00           C
ATOM     19  CA  GLY    19      46.223  29.328  33.579  1.00 25.00           C
ATOM     20  CA  LYS    20      46.560  31.336  36.836  1.00 25.00           C
ATOM     21  CA  ASP    21      43.285  29.766  38.014  1.00 25.00           C
ATOM     22  CA  ILE    22      40.415  31.666  36.400  1.00 25.00           C
ATOM     23  CA  ILE    23      40.585  28.894  33.871  1.00 25.00           C
ATOM     24  CA  GLU    24      42.185  28.917  30.461  1.00 25.00           C
ATOM     25  CA  LEU    25      41.116  31.491  27.870  1.00 25.00           C
ATOM     26  CA  ASP    26      40.227  30.410  24.331  1.00 25.00           C
ATOM     27  CA  THR    27      39.186  30.102  20.736  1.00 25.00           C
ATOM     28  CA  SER    28      39.661  30.368  16.929  1.00 25.00           C
ATOM     29  CA  LYS    29      36.261  28.882  15.978  1.00 25.00           C
ATOM     30  CA  LEU    30      33.938  26.388  17.762  1.00 25.00           C
ATOM     31  CA  THR    31      34.036  26.310  21.535  1.00 25.00           C
ATOM     32  CA  SER    32      36.464  23.317  21.759  1.00 25.00           C
ATOM     33  CA  LEU    33      34.536  22.037  24.818  1.00 25.00           C
ATOM     34  CA  PHE    34      35.326  20.797  28.265  1.00 25.00           C
ATOM     35  CA  GLN    35      38.662  20.788  30.181  1.00 25.00           C
ATOM     36  CA  ARG    36      40.053  21.792  26.788  1.00 25.00           C
ATOM     37  CA  MET    37      38.200  25.111  26.968  1.00 25.00           C
ATOM     38  CA  ILE    38      35.975  28.034  26.233  1.00 25.00           C
ATOM     39  CA  VAL    39      35.009  31.214  24.420  1.00 25.00           C
ATOM     40  CA  ALA    40      33.563  32.581  27.694  1.00 25.00           C
ATOM     41  CA  THR    41      32.092  35.523  29.640  1.00 25.00           C
ATOM     42  CA  GLY    42      29.724  37.899  31.550  1.00 25.00           C
ATOM     43  CA  ASP    43      29.712  35.100  34.137  1.00 25.00           C
ATOM     44  CA  SER    44      33.014  36.710  35.129  1.00 25.00           C
ATOM     45  CA  ASN    45      34.094  39.911  33.425  1.00 25.00           C
ATOM     46  CA  ARG    46      37.124  40.971  35.514  1.00 25.00           C
ATOM     47  CA  GLN    47      37.979  37.299  36.182  1.00 25.00           C
ATOM     48  CA  VAL    48      37.719  36.532  32.439  1.00 25.00           C
ATOM     49  CA  LYS    49      40.021  39.488  31.649  1.00 25.00           C
ATOM     50  CA  ALA    50      42.549  38.245  34.244  1.00 25.00           C
ATOM     51  CA  LEU    51      42.436  34.738  32.710  1.00 25.00           C
ATOM     52  CA  ALA    52      43.015  36.216  29.225  1.00 25.00           C
ATOM     53  CA  ASN    53      45.994  38.228  30.546  1.00 25.00           C
ATOM     54  CA  SER    54      47.447  35.069  32.150  1.00 25.00           C
ATOM     55  CA  VAL    55      47.032  33.171  28.849  1.00 25.00           C
ATOM     56  CA  GLN    56      48.790  36.007  26.969  1.00 25.00           C
ATOM     57  CA  VAL    57      51.663  35.937  29.501  1.00 25.00           C
ATOM     58  CA  LYS    58      51.974  32.143  29.079  1.00 25.00           C
ATOM     59  CA  LEU    59      52.060  32.548  25.271  1.00 25.00           C
ATOM     60  CA  LYS    60      54.786  35.219  25.592  1.00 25.00           C
ATOM     61  CA  GLU    61      56.821  32.903  27.866  1.00 25.00           C
ATOM     62  CA  ALA    62      58.272  31.227  24.757  1.00 25.00           C
ATOM     63  CA  GLY    63      56.915  31.175  21.220  1.00 25.00           C
ATOM     64  CA  VAL    64      53.338  32.164  20.309  1.00 25.00           C
ATOM     65  CA  ASP    65      50.887  35.079  20.887  1.00 25.00           C
ATOM     66  CA  ILE    66      47.152  34.434  21.503  1.00 25.00           C
ATOM     67  CA  VAL    67      43.492  33.478  21.021  1.00 25.00           C
ATOM     68  CA  GLY    68      40.157  35.162  20.122  1.00 25.00           C
ATOM     69  CA  SER    69      36.716  35.247  21.740  1.00 25.00           C
ATOM     70  CA  GLU    70      33.966  34.933  19.120  1.00 25.00           C
ATOM     71  CA  GLY    71      31.231  33.512  21.301  1.00 25.00           C
ATOM     72  CA  HIS    72      29.331  30.267  21.180  1.00 25.00           C
ATOM     73  CA  GLU    73      25.677  29.910  20.237  1.00 25.00           C
ATOM     74  CA  SER    74      26.121  26.226  20.911  1.00 25.00           C
ATOM     75  CA  GLY    75      26.761  27.250  24.560  1.00 25.00           C
ATOM     76  CA  GLU    76      25.818  23.955  26.287  1.00 25.00           C
ATOM     77  CA  TRP    77      29.172  22.177  26.026  1.00 25.00           C
ATOM     78  CA  VAL    78      29.675  23.662  29.522  1.00 25.00           C
ATOM     79  CA  LEU    79      30.360  23.375  33.261  1.00 25.00           C
ATOM     80  CA  VAL    80      31.773  23.169  36.756  1.00 25.00           C
ATOM     81  CA  ASP    81      28.936  25.565  37.787  1.00 25.00           C
ATOM     82  CA  ALA    82      30.227  29.089  38.370  1.00 25.00           C
ATOM     83  CA  GLY    83      32.472  31.331  40.474  1.00 25.00           C
ATOM     84  CA  ASP    84      35.940  30.917  38.842  1.00 25.00           C
ATOM     85  CA  VAL    85      36.584  27.671  36.950  1.00 25.00           C
ATOM     86  CA  VAL    86      33.890  28.733  34.510  1.00 25.00           C
ATOM     87  CA  VAL    87      32.198  27.829  31.242  1.00 25.00           C
ATOM     88  CA  HIS    88      30.211  28.619  28.111  1.00 25.00           C
ATOM     89  CA  VAL    89      28.298  31.078  30.253  1.00 25.00           C
ATOM     90  CA  MET    90      27.352  34.189  28.260  1.00 25.00           C
ATOM     91  CA  LEU    91      26.164  37.430  26.729  1.00 25.00           C
ATOM     92  CA  PRO    92      28.487  40.488  27.030  1.00 25.00           C
ATOM     93  CA  ALA    93      29.908  39.239  23.700  1.00 25.00           C
ATOM     94  CA  VAL    94      31.252  42.742  22.931  1.00 25.00           C
ATOM     95  CA  ARG    95      32.879  42.905  26.394  1.00 25.00           C
ATOM     96  CA  ASP    96      34.487  39.475  25.827  1.00 25.00           C
ATOM     97  CA  TYR    97      35.817  40.633  22.427  1.00 25.00           C
ATOM     98  CA  TYR    98      37.264  43.790  24.040  1.00 25.00           C
ATOM     99  CA  ASP    99      38.947  41.666  26.747  1.00 25.00           C
ATOM    100  CA  ILE   100      40.431  39.376  24.058  1.00 25.00           C
ATOM    101  CA  GLU   101      41.749  42.426  22.153  1.00 25.00           C
ATOM    102  CA  ALA   102      43.323  43.786  25.368  1.00 25.00           C
ATOM    103  CA  LEU   103      44.975  40.393  26.024  1.00 25.00           C
ATOM    104  CA  TRP   104      46.343  40.341  22.446  1.00 25.00           C
ATOM    105  CA  GLY   105      46.833  43.684  20.728  1.00 25.00           C
ATOM    106  CA  GLY   106      47.081  41.737  17.425  1.00 25.00           C
ATOM    107  CA  GLN   107      46.914  41.913  13.589  1.00 25.00           C
ATOM    108  CA  LYS   108      46.794  39.337  10.836  1.00 25.00           C
ATOM    109  CA  PRO   109      45.088  36.902   8.419  1.00 25.00           C
ATOM    110  CA  SER   110      43.622  33.467   8.936  1.00 25.00           C
ATOM    111  CA  PHE   111      40.206  31.878   8.549  1.00 25.00           C
ATOM    112  CA  ALA   112      37.293  29.491   7.914  1.00 25.00           C
ATOM    113  CA  VAL   113      35.937  29.491   4.326  1.00 25.00           C
ATOM    114  CA  GLY   114      34.482  29.345   0.787  1.00 25.00           C
ATOM    115  CA  ALA   115      32.750  27.243  -1.875  1.00 25.00           C
ATOM    116  CA  ALA   116      30.512  24.531  -0.381  1.00 25.00           C
ATOM    117  CA  LYS   117      30.126  20.742   0.254  1.00 25.00           C
ATOM    118  CA  PRO   118      28.533  17.848   2.171  1.00 25.00           C
ATOM    119  CA  TRP   119      31.857  16.136   1.375  1.00 25.00           C
ATOM    120  CA  SER   120      30.712  13.288  -0.872  1.00 25.00           C
ATOM    121  CA  ALA   121      33.262  10.496  -1.287  1.00 25.00           C
ATOM    122  CA  VAL   122      36.929  10.261  -2.147  1.00 25.00           C
ATOM    123  CA  LEU   123      36.836   6.891  -0.482  1.00 25.00           C
ATOM    124  CA  GLU   124      36.108   8.152   3.061  1.00 25.00           C
ATOM    125  CA  HIS   125      39.805   9.028   3.535  1.00 25.00           C
ATOM    126  CA  HIS   126      39.529  11.316   6.622  1.00 25.00           C
ATOM    127  CA  HIS   127      40.491   8.434   8.840  1.00 25.00           C
ATOM    128  CA  HIS   128      38.552   5.563  10.401  1.00 25.00           C
ATOM    129  CA  HIS   129      40.075   6.550  13.762  1.00 25.00           C
ATOM    130  CA  HIS   130      38.542   9.332  15.742  1.00 25.00           C
TER
END
