
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS599_1
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS599_1.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   107         1 - 107         4.86    11.08
  LCS_AVERAGE:     79.47

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        34 - 71          1.92    11.16
  LCS_AVERAGE:     20.40

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        43 - 66          0.86    11.24
  LONGEST_CONTINUOUS_SEGMENT:    24        44 - 67          1.00    11.34
  LCS_AVERAGE:     11.22

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1     20   29  107     3    3   11   24   35   46   60   70   88   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E       2     E       2     20   29  107     3    3    9   24   26   41   52   60   75   88   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I       3     I       3     21   29  107     6   14   21   33   39   48   64   84   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     Q       4     Q       4     21   29  107     9   16   21   33   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E       5     E       5     21   29  107     9   16   21   33   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I       6     I       6     21   29  107     8   16   21   33   39   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     S       7     S       7     21   29  107     9   16   21   33   39   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     K       8     K       8     21   29  107     9   16   21   33   43   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L       9     L       9     21   29  107     9   16   21   33   43   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      10     A      10     21   29  107     9   16   21   33   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I      11     I      11     21   29  107     9   16   21   33   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E      12     E      12     21   29  107     9   16   21   33   43   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      13     A      13     21   29  107     8   16   21   33   43   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      14     L      14     21   29  107     8   16   21   33   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E      15     E      15     21   29  107     9   16   21   28   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      16     D      16     21   29  107     8   16   21   28   39   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I      17     I      17     21   29  107     5   16   21   33   42   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     K      18     K      18     21   29  107     5   16   21   33   42   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     G      19     G      19     21   29  107     3   14   21   33   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     K      20     K      20     21   29  107     3   16   21   33   40   60   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      21     D      21     21   29  107     3   10   21   33   40   62   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I      22     I      22     21   29  107     5   13   21   33   43   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I      23     I      23     21   29  107     5   13   21   33   41   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E      24     E      24     21   29  107     5   13   21   33   41   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      25     L      25     19   29  107     4   13   21   33   41   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      26     D      26     17   29  107     5   12   21   33   40   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     T      27     T      27      7   29  107     4    9   16   28   42   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     S      28     S      28      5   29  107     3    4    6   17   23   46   52   65   85   90   92   93   95   97  100  100  101  102  104  104 
LCS_GDT     K      29     K      29      4   29  107     3    9   19   28   42   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      30     L      30      4   11  107     3    4    7   12   24   29   35   45   59   80   90   93   95   97  100  100  101  102  104  104 
LCS_GDT     T      31     T      31      4   10  107     3    4    7   11   22   28   34   45   59   81   90   93   95   97  100  100  101  102  104  104 
LCS_GDT     S      32     S      32      4    5  107     3    6   16   28   40   60   76   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      33     L      33      4    5  107     3    4    4    6    8   10   31   35   54   81   88   93   95   97  100  100  101  102  104  104 
LCS_GDT     F      34     F      34      8   38  107     3    8   16   28   38   57   76   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     Q      35     Q      35      8   38  107     6   22   32   41   51   61   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     R      36     R      36      8   38  107     6   15   30   41   51   58   72   84   88   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     M      37     M      37      8   38  107    12   22   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I      38     I      38      8   38  107     6   12   30   41   51   61   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      39     V      39      8   38  107     6   22   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      40     A      40      8   38  107     6   12   28   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     T      41     T      41      8   38  107     3   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     G      42     G      42     19   38  107     3    9   17   30   50   58   77   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      43     D      43     24   38  107     3   22   32   41   51   58   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     S      44     S      44     24   38  107    10   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     N      45     N      45     24   38  107    10   21   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     R      46     R      46     24   38  107    11   22   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     Q      47     Q      47     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      48     V      48     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     K      49     K      49     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      50     A      50     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      51     L      51     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      52     A      52     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     N      53     N      53     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     S      54     S      54     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      55     V      55     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     Q      56     Q      56     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      57     V      57     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     K      58     K      58     24   38  107    11   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      59     L      59     24   38  107    11   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     K      60     K      60     24   38  107    12   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E      61     E      61     24   38  107    11   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      62     A      62     24   38  107    11   23   32   41   51   62   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     G      63     G      63     24   38  107    11   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      64     V      64     24   38  107    11   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      65     D      65     24   38  107    11   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I      66     I      66     24   38  107     4    4   26   39   51   61   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      67     V      67     24   38  107     4   10   18   30   48   58   74   84   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     G      68     G      68     22   38  107     4   11   23   32   48   59   77   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     S      69     S      69      5   38  107     4   12   30   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E      70     E      70      5   38  107     4   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     G      71     G      71      5   38  107     4   10   28   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     H      72     H      72      5    8  107     3    5    6    8   12   26   33   45   57   75   88   93   95   97  100  100  101  102  104  104 
LCS_GDT     E      73     E      73      5    8  107     3    5    6    8   11   14   23   32   37   45   54   82   87   97  100  100  101  101  104  104 
LCS_GDT     S      74     S      74      5    8  107     3    5    6    8   15   25   31   34   46   55   75   88   95   97  100  100  101  102  104  104 
LCS_GDT     G      75     G      75      3    8  107     3    3    3    5   11   18   28   33   42   55   74   89   95   97  100  100  101  102  104  104 
LCS_GDT     E      76     E      76      8   21  107     7    9   12   23   43   58   76   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     W      77     W      77      8   21  107     7    9   12   25   49   61   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      78     V      78      8   21  107     7    9   14   40   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      79     L      79      8   21  107     7    9   14   39   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      80     V      80      8   21  107     7    9   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      81     D      81      8   21  107     7   14   26   39   51   61   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      82     A      82      8   21  107     7   16   29   39   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     G      83     G      83      8   21  107     4    9   16   30   46   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      84     D      84      8   21  107     4    7   28   39   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      85     V      85      8   21  107     5   20   30   41   51   58   74   84   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      86     V      86      8   21  107     4   22   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      87     V      87      8   21  107     5   12   30   41   51   60   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     H      88     H      88      8   21  107    11   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      89     V      89     12   21  107     7   10   16   31   49   61   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     M      90     M      90     12   21  107     6   23   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     L      91     L      91     12   21  107     8   12   28   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     P      92     P      92     12   21  107     8   12   31   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     A      93     A      93     12   21  107     8   12   32   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     V      94     V      94     12   21  107     8   12   20   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     R      95     R      95     12   21  107     8   12   19   38   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      96     D      96     12   21  107     8   12   20   41   51   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     Y      97     Y      97     12   21  107     8   12   17   31   49   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     Y      98     Y      98     12   20  107     8   12   17   30   47   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     D      99     D      99     12   19  107     7   10   16   26   44   60   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     I     100     I     100     12   19  107     4    8   14   24   47   63   78   86   89   91   92   95   96   97  100  100  101  102  104  104 
LCS_GDT     E     101     E     101      7   17  107     5    6    7   14   19   40   56   63   71   85   90   95   96   97   98  100  101  102  104  104 
LCS_GDT     A     102     A     102      7    9  107     5    6    7   10   24   31   47   59   63   78   92   95   96   97   97  100  100  102  104  104 
LCS_GDT     L     103     L     103      7    9  107     5    6   14   21   26   36   40   53   74   80   92   95   96   97   97  100  100  102  104  104 
LCS_GDT     W     104     W     104      7    9  107     5    6    7    7    8   36   40   46   57   67   89   92   96   97   97   99  100  102  104  104 
LCS_GDT     G     105     G     105      7    9  107     5    6    7    9   13   14   24   35   42   48   53   64   80   83   86   94   95   97   98  101 
LCS_GDT     G     106     G     106      5    8  107     3    4    5    9    9   14   17   20   27   29   30   35   48   56   76   82   87   90   94   96 
LCS_GDT     Q     107     Q     107      5    8  107     3    4    5    6    9   11   14   15   16   20   21   23   25   39   46   51   57   62   80   82 
LCS_GDT     K     108     K     108      5    8   75     3    4    6    7   11   11   14   15   16   20   21   23   25   25   30   35   41   55   70   73 
LCS_GDT     P     109     P     109      5    8   22     3    4    6    7    9   11   14   15   16   20   21   23   25   25   28   33   39   47   56   61 
LCS_GDT     S     110     S     110      5    8   22     4    4    6    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     F     111     F     111      5    8   22     4    4    6    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     A     112     A     112      5    8   22     4    4    6    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     V     113     V     113      5    8   22     4    4    6    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     G     114     G     114      5    8   22     3    4    5    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     A     115     A     115      5    8   22     3    4    5    7    9   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     A     116     A     116      5    5   22     3    4    5    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     K     117     K     117      5    5   22     3    4    5    6   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     P     118     P     118      3    5   22     3    4    5    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   59 
LCS_GDT     W     119     W     119      4    5   22     3    4    5    7   11   11   14   15   16   20   21   23   25   25   26   30   32   34   36   39 
LCS_GDT     S     120     S     120      4    5   22     3    4    5    7   11   11   13   15   16   20   21   23   24   25   26   30   32   34   36   39 
LCS_GDT     A     121     A     121      4    5   22     3    4    4    4    4    5    5    9    9   11   13   14   21   24   26   30   32   34   36   39 
LCS_GDT     V     122     V     122      4    5   18     0    4    4    4    4    5    5    6   12   16   18   22   26   28   30   35   39   50   55   59 
LCS_AVERAGE  LCS_A:  37.03  (  11.22   20.40   79.47 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     23     32     41     51     63     78     86     89     91     92     95     96     97    100    100    101    102    104    104 
GDT PERCENT_CA   9.84  18.85  26.23  33.61  41.80  51.64  63.93  70.49  72.95  74.59  75.41  77.87  78.69  79.51  81.97  81.97  82.79  83.61  85.25  85.25
GDT RMS_LOCAL    0.34   0.66   0.88   1.30   1.58   2.31   2.53   2.68   2.76   2.84   2.90   3.17   3.26   3.31   3.66   3.61   3.73   3.78   4.02   4.02
GDT RMS_ALL_CA  11.16  11.39  11.22  11.14  11.05  11.22  11.19  11.16  11.18  11.21  11.24  11.26  11.29  11.19  11.09  11.09  11.06  11.16  11.08  11.08

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          5.916
LGA    E       2      E       2          6.687
LGA    I       3      I       3          4.787
LGA    Q       4      Q       4          3.441
LGA    E       5      E       5          3.204
LGA    I       6      I       6          3.594
LGA    S       7      S       7          3.607
LGA    K       8      K       8          2.320
LGA    L       9      L       9          2.337
LGA    A      10      A      10          2.981
LGA    I      11      I      11          2.914
LGA    E      12      E      12          2.098
LGA    A      13      A      13          2.401
LGA    L      14      L      14          2.823
LGA    E      15      E      15          2.749
LGA    D      16      D      16          3.222
LGA    I      17      I      17          2.926
LGA    K      18      K      18          2.496
LGA    G      19      G      19          2.796
LGA    K      20      K      20          3.335
LGA    D      21      D      21          3.195
LGA    I      22      I      22          1.839
LGA    I      23      I      23          2.791
LGA    E      24      E      24          2.639
LGA    L      25      L      25          2.817
LGA    D      26      D      26          2.970
LGA    T      27      T      27          2.398
LGA    S      28      S      28          6.215
LGA    K      29      K      29          2.305
LGA    L      30      L      30          7.448
LGA    T      31      T      31          7.140
LGA    S      32      S      32          3.743
LGA    L      33      L      33          7.151
LGA    F      34      F      34          3.805
LGA    Q      35      Q      35          3.947
LGA    R      36      R      36          5.587
LGA    M      37      M      37          2.453
LGA    I      38      I      38          3.604
LGA    V      39      V      39          2.350
LGA    A      40      A      40          2.986
LGA    T      41      T      41          2.384
LGA    G      42      G      42          3.568
LGA    D      43      D      43          3.637
LGA    S      44      S      44          3.098
LGA    N      45      N      45          2.562
LGA    R      46      R      46          1.900
LGA    Q      47      Q      47          2.115
LGA    V      48      V      48          2.290
LGA    K      49      K      49          1.555
LGA    A      50      A      50          1.557
LGA    L      51      L      51          2.074
LGA    A      52      A      52          1.512
LGA    N      53      N      53          1.245
LGA    S      54      S      54          1.737
LGA    V      55      V      55          1.581
LGA    Q      56      Q      56          1.155
LGA    V      57      V      57          1.671
LGA    K      58      K      58          2.377
LGA    L      59      L      59          2.328
LGA    K      60      K      60          1.946
LGA    E      61      E      61          2.474
LGA    A      62      A      62          3.378
LGA    G      63      G      63          3.123
LGA    V      64      V      64          2.944
LGA    D      65      D      65          2.747
LGA    I      66      I      66          3.423
LGA    V      67      V      67          4.462
LGA    G      68      G      68          3.782
LGA    S      69      S      69          2.638
LGA    E      70      E      70          3.110
LGA    G      71      G      71          1.611
LGA    H      72      H      72          8.611
LGA    E      73      E      73         11.140
LGA    S      74      S      74         10.198
LGA    G      75      G      75          9.434
LGA    E      76      E      76          3.730
LGA    W      77      W      77          3.245
LGA    V      78      V      78          2.085
LGA    L      79      L      79          2.794
LGA    V      80      V      80          2.115
LGA    D      81      D      81          3.216
LGA    A      82      A      82          2.459
LGA    G      83      G      83          2.783
LGA    D      84      D      84          2.117
LGA    V      85      V      85          4.826
LGA    V      86      V      86          1.666
LGA    V      87      V      87          3.648
LGA    H      88      H      88          1.508
LGA    V      89      V      89          3.407
LGA    M      90      M      90          0.517
LGA    L      91      L      91          2.185
LGA    P      92      P      92          2.099
LGA    A      93      A      93          1.322
LGA    V      94      V      94          1.724
LGA    R      95      R      95          2.464
LGA    D      96      D      96          2.130
LGA    Y      97      Y      97          2.157
LGA    Y      98      Y      98          2.760
LGA    D      99      D      99          3.763
LGA    I     100      I     100          2.533
LGA    E     101      E     101          8.027
LGA    A     102      A     102          9.998
LGA    L     103      L     103          8.858
LGA    W     104      W     104          9.712
LGA    G     105      G     105         15.486
LGA    G     106      G     106         17.967
LGA    Q     107      Q     107         19.926
LGA    K     108      K     108         20.561
LGA    P     109      P     109         22.008
LGA    S     110      S     110         27.614
LGA    F     111      F     111         29.413
LGA    A     112      A     112         33.748
LGA    V     113      V     113         36.444
LGA    G     114      G     114         33.576
LGA    A     115      A     115         32.651
LGA    A     116      A     116         32.537
LGA    K     117      K     117         30.161
LGA    P     118      P     118         23.652
LGA    W     119      W     119         24.449
LGA    S     120      S     120         28.708
LGA    A     121      A     121         27.132
LGA    V     122      V     122         22.905

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     86    2.68    51.230    46.619     3.092

LGA_LOCAL      RMSD =  2.681  Number of atoms =   86  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 11.122  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 10.099  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.212834 * X  +   0.634263 * Y  +   0.743245 * Z  +  38.717464
  Y_new =  -0.938960 * X  +  -0.343189 * Y  +   0.023989 * Z  +  26.983749
  Z_new =   0.270289 * X  +  -0.692771 * Y  +   0.668590 * Z  +  22.881836 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.803159    2.338434  [ DEG:   -46.0176    133.9824 ]
  Theta =  -0.273693   -2.867900  [ DEG:   -15.6815   -164.3185 ]
  Phi   =  -1.793700    1.347893  [ DEG:  -102.7714     77.2286 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS599_1                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS599_1.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   86   2.68  46.619    10.10
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS599_1
PFRMAT TS                                                                       
TARGET T0354                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      52.287  20.202  16.799  1.00  0.00              
ATOM      2  CA  GLU     2      48.825  18.137  17.775  1.00  0.00              
ATOM      3  CA  ILE     3      46.378  20.880  18.546  1.00  0.00              
ATOM      4  CA  GLN     4      47.094  17.703  21.211  1.00  0.00              
ATOM      5  CA  GLU     5      50.031  19.698  22.417  1.00  0.00              
ATOM      6  CA  ILE     6      47.930  22.837  22.836  1.00  0.00              
ATOM      7  CA  SER     7      45.293  20.851  24.802  1.00  0.00              
ATOM      8  CA  LYS     8      47.962  19.382  27.075  1.00  0.00              
ATOM      9  CA  LEU     9      49.471  22.847  27.645  1.00  0.00              
ATOM     10  CA  ALA    10      46.113  24.415  28.501  1.00  0.00              
ATOM     11  CA  ILE    11      45.287  21.648  30.911  1.00  0.00              
ATOM     12  CA  GLU    12      48.630  21.979  32.600  1.00  0.00              
ATOM     13  CA  ALA    13      48.397  25.762  32.980  1.00  0.00              
ATOM     14  CA  LEU    14      44.913  25.550  34.402  1.00  0.00              
ATOM     15  CA  GLU    15      45.951  22.860  36.904  1.00  0.00              
ATOM     16  CA  ASP    16      48.951  24.879  38.027  1.00  0.00              
ATOM     17  CA  ILE    17      46.827  27.990  38.578  1.00  0.00              
ATOM     18  CA  LYS    18      43.999  26.212  40.408  1.00  0.00              
ATOM     19  CA  GLY    19      41.322  26.644  37.682  1.00  0.00              
ATOM     20  CA  LYS    20      39.081  23.723  38.392  1.00  0.00              
ATOM     21  CA  ASP    21      37.381  22.825  35.259  1.00  0.00              
ATOM     22  CA  ILE    22      39.157  22.814  31.872  1.00  0.00              
ATOM     23  CA  ILE    23      37.485  21.180  28.925  1.00  0.00              
ATOM     24  CA  GLU    24      39.384  20.396  25.792  1.00  0.00              
ATOM     25  CA  LEU    25      37.452  19.702  22.587  1.00  0.00              
ATOM     26  CA  ASP    26      38.872  17.270  19.963  1.00  0.00              
ATOM     27  CA  THR    27      37.585  17.920  16.546  1.00  0.00              
ATOM     28  CA  SER    28      37.250  14.431  15.195  1.00  0.00              
ATOM     29  CA  LYS    29      39.373  14.689  12.099  1.00  0.00              
ATOM     30  CA  LEU    30      42.449  16.099  13.731  1.00  0.00              
ATOM     31  CA  THR    31      43.620  18.400  10.953  1.00  0.00              
ATOM     32  CA  SER    32      40.488  20.567  10.933  1.00  0.00              
ATOM     33  CA  LEU    33      40.642  20.698  14.713  1.00  0.00              
ATOM     34  CA  PHE    34      44.252  21.878  14.652  1.00  0.00              
ATOM     35  CA  GLN    35      43.357  24.866  12.505  1.00  0.00              
ATOM     36  CA  ARG    36      40.893  25.858  15.257  1.00  0.00              
ATOM     37  CA  MET    37      41.370  24.865  18.838  1.00  0.00              
ATOM     38  CA  ILE    38      38.518  25.092  21.344  1.00  0.00              
ATOM     39  CA  VAL    39      39.114  25.355  24.943  1.00  0.00              
ATOM     40  CA  ALA    40      36.350  25.289  27.318  1.00  0.00              
ATOM     41  CA  THR    41      36.852  26.822  30.588  1.00  0.00              
ATOM     42  CA  GLY    42      34.362  26.692  33.359  1.00  0.00              
ATOM     43  CA  ASP    43      36.097  27.926  36.428  1.00  0.00              
ATOM     44  CA  SER    44      35.230  31.402  37.533  1.00  0.00              
ATOM     45  CA  ASN    45      35.523  34.410  35.312  1.00  0.00              
ATOM     46  CA  ARG    46      38.692  35.830  36.966  1.00  0.00              
ATOM     47  CA  GLN    47      40.367  32.468  36.660  1.00  0.00              
ATOM     48  CA  VAL    48      39.554  32.265  32.924  1.00  0.00              
ATOM     49  CA  LYS    49      40.973  35.795  32.391  1.00  0.00              
ATOM     50  CA  ALA    50      44.099  34.838  34.237  1.00  0.00              
ATOM     51  CA  LEU    51      44.397  31.715  32.043  1.00  0.00              
ATOM     52  CA  ALA    52      43.890  33.669  28.884  1.00  0.00              
ATOM     53  CA  ASN    53      46.574  36.104  29.899  1.00  0.00              
ATOM     54  CA  SER    54      48.987  33.225  30.690  1.00  0.00              
ATOM     55  CA  VAL    55      48.320  31.618  27.309  1.00  0.00              
ATOM     56  CA  GLN    56      48.938  34.952  25.620  1.00  0.00              
ATOM     57  CA  VAL    57      52.336  35.234  27.315  1.00  0.00              
ATOM     58  CA  LYS    58      53.199  31.700  26.257  1.00  0.00              
ATOM     59  CA  LEU    59      52.246  32.477  22.664  1.00  0.00              
ATOM     60  CA  LYS    60      54.344  35.658  22.651  1.00  0.00              
ATOM     61  CA  GLU    61      57.343  33.757  23.996  1.00  0.00              
ATOM     62  CA  ALA    62      56.963  31.229  21.138  1.00  0.00              
ATOM     63  CA  GLY    63      56.746  33.948  18.550  1.00  0.00              
ATOM     64  CA  VAL    64      52.968  33.813  17.929  1.00  0.00              
ATOM     65  CA  ASP    65      51.257  37.162  17.459  1.00  0.00              
ATOM     66  CA  ILE    66      48.827  37.757  20.343  1.00  0.00              
ATOM     67  CA  VAL    67      45.671  38.918  18.907  1.00  0.00              
ATOM     68  CA  GLY    68      43.216  39.217  21.720  1.00  0.00              
ATOM     69  CA  SER    69      39.520  39.467  21.063  1.00  0.00              
ATOM     70  CA  GLU    70      37.179  40.045  23.953  1.00  0.00              
ATOM     71  CA  GLY    71      33.667  39.173  24.271  1.00  0.00              
ATOM     72  CA  HIS    72      30.960  40.394  21.959  1.00  0.00              
ATOM     73  CA  GLU    73      29.467  37.152  20.654  1.00  0.00              
ATOM     74  CA  SER    74      26.507  36.846  22.941  1.00  0.00              
ATOM     75  CA  GLY    75      27.340  34.228  25.497  1.00  0.00              
ATOM     76  CA  GLU    76      30.985  34.671  26.148  1.00  0.00              
ATOM     77  CA  TRP    77      33.540  33.710  23.468  1.00  0.00              
ATOM     78  CA  VAL    78      37.101  34.756  23.744  1.00  0.00              
ATOM     79  CA  LEU    79      39.357  34.631  20.672  1.00  0.00              
ATOM     80  CA  VAL    80      43.009  34.179  20.993  1.00  0.00              
ATOM     81  CA  ASP    81      45.202  34.236  18.006  1.00  0.00              
ATOM     82  CA  ALA    82      48.217  32.165  18.127  1.00  0.00              
ATOM     83  CA  GLY    83      49.065  30.917  14.721  1.00  0.00              
ATOM     84  CA  ASP    84      46.362  28.243  14.427  1.00  0.00              
ATOM     85  CA  VAL    85      43.457  29.910  16.139  1.00  0.00              
ATOM     86  CA  VAL    86      42.465  29.270  19.637  1.00  0.00              
ATOM     87  CA  VAL    87      39.089  29.792  20.886  1.00  0.00              
ATOM     88  CA  HIS    88      38.250  30.016  24.338  1.00  0.00              
ATOM     89  CA  VAL    89      34.958  29.420  25.689  1.00  0.00              
ATOM     90  CA  MET    90      33.790  30.678  29.037  1.00  0.00              
ATOM     91  CA  LEU    91      30.966  29.143  30.967  1.00  0.00              
ATOM     92  CA  PRO    92      29.042  26.052  31.918  1.00  0.00              
ATOM     93  CA  ALA    93      25.583  27.608  31.756  1.00  0.00              
ATOM     94  CA  VAL    94      26.251  29.204  28.438  1.00  0.00              
ATOM     95  CA  ARG    95      27.423  26.135  26.623  1.00  0.00              
ATOM     96  CA  ASP    96      24.484  24.015  27.665  1.00  0.00              
ATOM     97  CA  TYR    97      21.872  26.629  26.790  1.00  0.00              
ATOM     98  CA  TYR    98      23.156  27.606  23.395  1.00  0.00              
ATOM     99  CA  ASP    99      24.096  24.207  21.895  1.00  0.00              
ATOM    100  CA  ILE   100      27.541  23.940  20.341  1.00  0.00              
ATOM    101  CA  GLU   101      26.846  24.445  16.637  1.00  0.00              
ATOM    102  CA  ALA   102      24.915  27.622  17.472  1.00  0.00              
ATOM    103  CA  LEU   103      27.720  29.008  19.656  1.00  0.00              
ATOM    104  CA  TRP   104      30.315  28.479  16.937  1.00  0.00              
ATOM    105  CA  GLY   105      28.093  30.241  14.394  1.00  0.00              
ATOM    106  CA  GLY   106      27.479  33.252  16.640  1.00  0.00              
ATOM    107  CA  GLN   107      31.229  33.838  17.278  1.00  0.00              
ATOM    108  CA  LYS   108      32.386  33.932  13.705  1.00  0.00              
ATOM    109  CA  PRO   109      34.129  30.678  13.163  1.00  0.00              
ATOM    110  CA  SER   110      37.252  31.001  11.068  1.00  0.00              
ATOM    111  CA  PHE   111      37.594  28.565   8.291  1.00  0.00              
ATOM    112  CA  ALA   112      40.730  26.493   8.182  1.00  0.00              
ATOM    113  CA  VAL   113      40.014  23.347   6.148  1.00  0.00              
ATOM    114  CA  GLY   114      36.311  22.888   6.959  1.00  0.00              
ATOM    115  CA  ALA   115      35.486  19.639   5.255  1.00  0.00              
ATOM    116  CA  ALA   116      33.056  17.740   7.341  1.00  0.00              
ATOM    117  CA  LYS   117      29.447  18.810   7.616  1.00  0.00              
ATOM    118  CA  PRO   118      28.945  18.984  11.422  1.00  0.00              
ATOM    119  CA  TRP   119      25.767  17.048  11.970  1.00  0.00              
ATOM    120  CA  SER   120      26.703  14.462  14.526  1.00  0.00              
ATOM    121  CA  ALA   121      24.254  14.786  17.353  1.00  0.00              
ATOM    122  CA  VAL   122      26.218  16.024  20.349  1.00  0.00              
ATOM    123  CA  LEU   123      24.064  17.187  23.228  1.00  0.00              
ATOM    124  CA  GLU   124      25.886  15.131  25.917  1.00  0.00              
ATOM    125  CA  HIS   125      29.374  15.710  24.661  1.00  0.00              
ATOM    126  CA  HIS   126      31.672  16.222  27.642  1.00  0.00              
ATOM    127  CA  HIS   127      34.068  18.192  25.378  1.00  0.00              
ATOM    128  CA  HIS   128      33.707  17.881  21.193  1.00  0.00              
ATOM    129  CA  HIS   129      31.805  21.446  19.991  1.00  0.00              
ATOM    130  CA  HIS   130      30.197  21.412  16.418  1.00  0.00              
TER                                                                             
END
