
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS599_2
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS599_2.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    87        18 - 104         4.80    15.46
  LONGEST_CONTINUOUS_SEGMENT:    87        19 - 105         4.87    15.49
  LCS_AVERAGE:     59.49

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        34 - 71          1.99    15.52
  LCS_AVERAGE:     17.97

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        36 - 66          0.97    15.41
  LONGEST_CONTINUOUS_SEGMENT:    31        37 - 67          1.00    15.41
  LCS_AVERAGE:     12.65

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      0   21   39     0    0    0    0    0    4    6   17   21   22   23   23   26   33   33   35   37   39   40   41 
LCS_GDT     E       2     E       2     19   22   39     0   16   19   19   21   23   23   25   27   29   30   31   33   34   36   38   40   42   45   49 
LCS_GDT     I       3     I       3     19   22   39     9   16   19   19   21   23   23   25   27   29   30   31   33   34   42   45   46   51   55   59 
LCS_GDT     Q       4     Q       4     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   34   36   38   44   49   53   55 
LCS_GDT     E       5     E       5     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   34   36   38   40   49   53   55 
LCS_GDT     I       6     I       6     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   34   36   47   50   54   58   68 
LCS_GDT     S       7     S       7     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   39   45   47   59   63   70   76 
LCS_GDT     K       8     K       8     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   34   36   41   48   55   61   65 
LCS_GDT     L       9     L       9     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   34   36   41   50   56   63   67 
LCS_GDT     A      10     A      10     19   22   39    10   16   19   19   21   23   23   25   27   29   31   32   41   43   48   56   67   69   73   78 
LCS_GDT     I      11     I      11     19   22   39    10   16   19   19   21   23   23   25   27   29   31   32   43   49   59   68   71   75   81   87 
LCS_GDT     E      12     E      12     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   37   45   56   65   66   71   77 
LCS_GDT     A      13     A      13     19   22   39    10   16   19   19   21   23   23   25   27   29   30   31   33   39   45   55   65   66   71   77 
LCS_GDT     L      14     L      14     19   22   39    10   16   19   19   21   23   23   25   27   29   31   38   44   54   62   68   73   81   85   87 
LCS_GDT     E      15     E      15     19   22   39    10   16   19   19   21   23   23   25   27   29   31   38   44   54   63   68   73   76   81   87 
LCS_GDT     D      16     D      16     19   22   82     8   16   19   19   21   23   23   25   27   29   30   31   33   37   46   56   65   66   72   77 
LCS_GDT     I      17     I      17     19   22   86     5   16   19   19   21   23   23   25   27   29   30   31   38   44   47   56   65   71   75   78 
LCS_GDT     K      18     K      18     19   22   87     5   16   19   19   21   23   23   25   27   33   46   56   61   68   72   79   82   84   85   87 
LCS_GDT     G      19     G      19     19   22   87     3   14   19   19   21   23   23   28   45   53   64   71   74   75   78   80   82   84   85   87 
LCS_GDT     K      20     K      20     19   22   87     5   15   19   19   32   54   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     D      21     D      21      7   22   87     3    7   14   19   32   48   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     I      22     I      22      7   22   87     3    7   10   23   43   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     I      23     I      23      8   22   87     4    9   14   27   43   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     E      24     E      24      8   14   87     4    7   11   18   38   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     L      25     L      25      8   14   87     4    9   17   27   43   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     D      26     D      26      8   12   87     5    6   11   25   41   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     T      27     T      27      8   12   87     5    6   12   21   37   53   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     S      28     S      28      8   12   87     5    6    8   11   13   20   38   50   64   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     K      29     K      29      8   12   87     5    6   17   31   45   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     L      30     L      30      8   12   87     5    5    8   16   35   44   54   63   67   69   70   73   75   79   81   81   82   84   85   87 
LCS_GDT     T      31     T      31      4    9   87     3    4    4    5   13   40   50   59   64   69   70   73   75   79   81   81   82   84   85   87 
LCS_GDT     S      32     S      32      4    5   87     3    5    9   19   32   50   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     L      33     L      33      4    5   87     3    4    4   17   21   23   23   25   26   44   56   64   72   79   81   81   82   84   85   87 
LCS_GDT     F      34     F      34      4   38   87     3    4    4    8    8   14   30   50   61   69   69   71   75   79   81   81   82   84   85   87 
LCS_GDT     Q      35     Q      35     28   38   87     9   20   29   38   44   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     R      36     R      36     31   38   87     9   22   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     M      37     M      37     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     I      38     I      38     31   38   87    10   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      39     V      39     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     A      40     A      40     31   38   87    13   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     T      41     T      41     31   38   87     7   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     G      42     G      42     31   38   87     4   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     D      43     D      43     31   38   87     4   21   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     S      44     S      44     31   38   87    13   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     N      45     N      45     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     R      46     R      46     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   77   81   81   82   84   85   87 
LCS_GDT     Q      47     Q      47     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      48     V      48     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     K      49     K      49     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     A      50     A      50     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     L      51     L      51     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     A      52     A      52     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     N      53     N      53     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     S      54     S      54     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      55     V      55     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     Q      56     Q      56     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      57     V      57     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     K      58     K      58     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     L      59     L      59     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     K      60     K      60     31   38   87    14   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     E      61     E      61     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     A      62     A      62     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     G      63     G      63     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      64     V      64     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     D      65     D      65     31   38   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     I      66     I      66     31   38   87     4   13   29   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      67     V      67     31   38   87     4   13   22   32   44   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     G      68     G      68     25   38   87     4   13   25   34   44   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     S      69     S      69      5   38   87     4    9   14   31   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     E      70     E      70      5   38   87     4    4   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     G      71     G      71      5   38   87     4    7   16   26   41   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     H      72     H      72      3    8   87     3    3    3    6    8   12   18   39   45   56   64   73   75   79   81   81   82   84   85   87 
LCS_GDT     E      73     E      73      3    8   87     4    4    7   11   18   28   36   50   56   67   70   73   75   79   81   81   82   84   85   87 
LCS_GDT     S      74     S      74      3    8   87     3    3    7   11   18   28   36   46   52   62   70   73   75   79   81   81   82   84   85   87 
LCS_GDT     G      75     G      75      3    8   87     3    3    7   11   15   22   36   42   52   59   69   73   75   79   81   81   82   84   85   87 
LCS_GDT     E      76     E      76      9   17   87     8   13   17   26   45   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     W      77     W      77      9   17   87     9   13   25   35   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      78     V      78      9   17   87     9   13   29   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     L      79     L      79      9   17   87     9   23   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      80     V      80      9   17   87     9   24   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     D      81     D      81      9   17   87     8   22   31   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     A      82     A      82      9   17   87     7   21   29   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     G      83     G      83      9   17   87     3    9   20   31   42   54   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     D      84     D      84      9   17   87     4    7   11   19   32   54   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      85     V      85      8   17   87     5    7   22   32   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      86     V      86      8   17   87     5    7   17   27   43   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      87     V      87      8   17   87     5    7   18   34   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     H      88     H      88      8   17   87     5   14   22   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      89     V      89     11   17   87     5    8   11   17   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     M      90     M      90     11   17   87     5    7   24   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     L      91     L      91     11   17   87     8    9   17   38   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     P      92     P      92     11   17   87     8    9   11   22   46   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     A      93     A      93     11   15   87     8    9   13   26   43   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     V      94     V      94     11   15   87     8    9   22   32   43   55   63   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     R      95     R      95     11   15   87     8    9   11   16   27   44   60   67   67   69   72   73   75   79   81   81   82   84   85   87 
LCS_GDT     D      96     D      96     11   15   87     8    9   11   16   18   31   48   58   65   69   72   73   74   79   81   81   82   84   85   87 
LCS_GDT     Y      97     Y      97     11   15   87     8    9   11   16   19   31   53   57   64   69   72   73   74   79   81   81   82   84   85   87 
LCS_GDT     Y      98     Y      98     11   15   87     8    9   11   16   19   40   53   58   65   69   72   73   74   79   81   81   82   84   85   87 
LCS_GDT     D      99     D      99     11   15   87     4    9   11   16   18   21   26   45   58   66   71   73   74   75   81   81   82   84   85   87 
LCS_GDT     I     100     I     100     10   14   87     4    7   10   11   18   21   26   31   55   67   72   73   74   79   81   81   82   84   85   87 
LCS_GDT     E     101     E     101      7   14   87     5    7    7   11   14   21   26   31   37   51   61   66   71   74   76   79   81   84   85   87 
LCS_GDT     A     102     A     102      7   14   87     5    7    7   10   14   16   23   31   37   54   58   62   68   70   75   77   79   81   84   87 
LCS_GDT     L     103     L     103      7    9   87     5    7    7    7    8    9   10   20   36   47   53   63   67   74   75   77   79   81   84   87 
LCS_GDT     W     104     W     104      7    9   87     5    7    7    7    8   16   21   31   50   54   59   68   71   74   76   78   80   82   85   87 
LCS_GDT     G     105     G     105      7    9   87     5    7    7    8   14   16   19   29   36   43   46   55   59   67   71   73   75   78   81   84 
LCS_GDT     G     106     G     106      6    9   74     4    6    7    8    8   10   12   18   23   31   38   40   47   56   58   65   68   72   75   80 
LCS_GDT     Q     107     Q     107      6    9   73     4    6    7    7    9   10   11   13   16   21   25   28   32   36   41   53   55   63   70   75 
LCS_GDT     K     108     K     108      6    9   33     4    6    7    7    9   10   11   13   15   18   21   29   35   43   52   57   61   64   70   75 
LCS_GDT     P     109     P     109      6    9   19     4    6    7    7    9   11   11   13   15   18   20   24   28   36   43   50   53   59   63   67 
LCS_GDT     S     110     S     110      6    9   19     3    5    6    7    9   11   11   13   15   18   21   22   23   26   26   29   31   33   37   41 
LCS_GDT     F     111     F     111      6    9   19     3    6    7    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   36 
LCS_GDT     A     112     A     112      5    9   19     3    6    7    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     V     113     V     113      5    9   19     3    4    7    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   34 
LCS_GDT     G     114     G     114      3    9   19     3    3    6    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     A     115     A     115      3    6   19     3    3    3    4    5    5   10   12   14   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     A     116     A     116      4    6   19     3    4    6    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     K     117     K     117      4    6   19     3    4    6    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     P     118     P     118      4    6   19     3    4    6    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     W     119     W     119      4    6   19     3    4    6    7    9   11   11   13   15   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     S     120     S     120      3    4   19     3    3    4    4    7   10   11   13   15   18   21   22   23   26   26   29   31   32   33   35 
LCS_GDT     A     121     A     121      3    4   19     3    3    4    4    4    6    7    7   10   14   16   19   21   23   25   28   31   32   33   35 
LCS_GDT     V     122     V     122      3    4   19     0    3    4    4    4    4    5    5    7   13   16   18   19   22   24   25   26   30   32   35 
LCS_AVERAGE  LCS_A:  30.04  (  12.65   17.97   59.49 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     24     31     38     46     55     63     67     67     69     72     73     75     79     81     81     82     84     85     87 
GDT PERCENT_CA  11.48  19.67  25.41  31.15  37.70  45.08  51.64  54.92  54.92  56.56  59.02  59.84  61.48  64.75  66.39  66.39  67.21  68.85  69.67  71.31
GDT RMS_LOCAL    0.35   0.64   0.89   1.14   1.62   2.08   2.31   2.51   2.51   2.69   2.94   3.22   3.34   3.78   3.89   3.89   3.98   4.36   4.49   4.87
GDT RMS_ALL_CA  15.45  15.45  15.43  15.42  15.38  15.55  15.52  15.60  15.60  15.61  15.63  15.61  15.63  15.65  15.63  15.63  15.59  15.48  15.47  15.41

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         26.122
LGA    E       2      E       2         26.354
LGA    I       3      I       3         20.591
LGA    Q       4      Q       4         23.436
LGA    E       5      E       5         25.483
LGA    I       6      I       6         20.439
LGA    S       7      S       7         17.213
LGA    K       8      K       8         21.466
LGA    L       9      L       9         22.442
LGA    A      10      A      10         16.597
LGA    I      11      I      11         15.506
LGA    E      12      E      12         20.779
LGA    A      13      A      13         20.434
LGA    L      14      L      14         14.338
LGA    E      15      E      15         16.363
LGA    D      16      D      16         21.956
LGA    I      17      I      17         19.063
LGA    K      18      K      18         13.347
LGA    G      19      G      19          8.640
LGA    K      20      K      20          2.832
LGA    D      21      D      21          3.779
LGA    I      22      I      22          1.614
LGA    I      23      I      23          2.130
LGA    E      24      E      24          2.262
LGA    L      25      L      25          2.536
LGA    D      26      D      26          2.341
LGA    T      27      T      27          3.768
LGA    S      28      S      28          4.910
LGA    K      29      K      29          0.858
LGA    L      30      L      30          6.866
LGA    T      31      T      31          7.273
LGA    S      32      S      32          3.971
LGA    L      33      L      33          8.867
LGA    F      34      F      34          7.261
LGA    Q      35      Q      35          3.699
LGA    R      36      R      36          3.034
LGA    M      37      M      37          2.674
LGA    I      38      I      38          2.699
LGA    V      39      V      39          2.817
LGA    A      40      A      40          2.980
LGA    T      41      T      41          3.360
LGA    G      42      G      42          3.560
LGA    D      43      D      43          3.993
LGA    S      44      S      44          3.848
LGA    N      45      N      45          3.379
LGA    R      46      R      46          3.867
LGA    Q      47      Q      47          3.564
LGA    V      48      V      48          2.753
LGA    K      49      K      49          2.910
LGA    A      50      A      50          3.106
LGA    L      51      L      51          2.640
LGA    A      52      A      52          2.077
LGA    N      53      N      53          2.342
LGA    S      54      S      54          2.305
LGA    V      55      V      55          1.717
LGA    Q      56      Q      56          1.615
LGA    V      57      V      57          2.065
LGA    K      58      K      58          2.413
LGA    L      59      L      59          2.240
LGA    K      60      K      60          1.651
LGA    E      61      E      61          2.139
LGA    A      62      A      62          3.166
LGA    G      63      G      63          2.845
LGA    V      64      V      64          2.828
LGA    D      65      D      65          2.459
LGA    I      66      I      66          2.684
LGA    V      67      V      67          3.726
LGA    G      68      G      68          3.298
LGA    S      69      S      69          2.216
LGA    E      70      E      70          2.032
LGA    G      71      G      71          3.002
LGA    H      72      H      72          8.256
LGA    E      73      E      73          7.692
LGA    S      74      S      74          8.816
LGA    G      75      G      75          8.470
LGA    E      76      E      76          2.449
LGA    W      77      W      77          2.054
LGA    V      78      V      78          1.312
LGA    L      79      L      79          1.564
LGA    V      80      V      80          1.253
LGA    D      81      D      81          2.263
LGA    A      82      A      82          2.171
LGA    G      83      G      83          2.943
LGA    D      84      D      84          2.824
LGA    V      85      V      85          2.839
LGA    V      86      V      86          2.170
LGA    V      87      V      87          2.073
LGA    H      88      H      88          1.891
LGA    V      89      V      89          2.552
LGA    M      90      M      90          1.514
LGA    L      91      L      91          2.484
LGA    P      92      P      92          1.936
LGA    A      93      A      93          2.665
LGA    V      94      V      94          2.494
LGA    R      95      R      95          3.890
LGA    D      96      D      96          5.562
LGA    Y      97      Y      97          6.356
LGA    Y      98      Y      98          6.319
LGA    D      99      D      99          7.989
LGA    I     100      I     100          6.799
LGA    E     101      E     101         10.865
LGA    A     102      A     102         13.264
LGA    L     103      L     103         11.447
LGA    W     104      W     104         10.736
LGA    G     105      G     105         15.913
LGA    G     106      G     106         17.865
LGA    Q     107      Q     107         17.985
LGA    K     108      K     108         17.934
LGA    P     109      P     109         19.765
LGA    S     110      S     110         26.138
LGA    F     111      F     111         28.444
LGA    A     112      A     112         33.857
LGA    V     113      V     113         38.072
LGA    G     114      G     114         40.074
LGA    A     115      A     115         40.436
LGA    A     116      A     116         41.821
LGA    K     117      K     117         43.191
LGA    P     118      P     118         37.451
LGA    W     119      W     119         39.041
LGA    S     120      S     120         41.443
LGA    A     121      A     121         40.107
LGA    V     122      V     122         36.035

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     67    2.51    43.033    38.774     2.566

LGA_LOCAL      RMSD =  2.511  Number of atoms =   67  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 15.551  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 14.627  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.656529 * X  +  -0.712398 * Y  +  -0.247910 * Z  +  38.474400
  Y_new =  -0.412561 * X  +   0.614282 * Y  +  -0.672645 * Z  +  25.716906
  Z_new =   0.631478 * X  +  -0.339333 * Y  +  -0.697201 * Z  +  22.987545 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.688635    0.452957  [ DEG:  -154.0475     25.9526 ]
  Theta =  -0.683457   -2.458135  [ DEG:   -39.1592   -140.8408 ]
  Phi   =  -2.580554    0.561038  [ DEG:  -147.8549     32.1451 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS599_2                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS599_2.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   67   2.51  38.774    14.63
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS599_2
PFRMAT TS                                                                       
TARGET T0354                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      30.801  23.863  15.917  1.00  0.00              
ATOM      2  CA  GLU     2      28.436  21.442  14.740  1.00  0.00              
ATOM      3  CA  ILE     3      30.526  23.254  17.030  1.00  0.00              
ATOM      4  CA  GLN     4      27.185  23.015  19.610  1.00  0.00              
ATOM      5  CA  GLU     5      27.656  19.290  19.619  1.00  0.00              
ATOM      6  CA  ILE     6      31.337  19.412  20.399  1.00  0.00              
ATOM      7  CA  SER     7      30.820  21.844  23.226  1.00  0.00              
ATOM      8  CA  LYS     8      28.096  19.718  24.762  1.00  0.00              
ATOM      9  CA  LEU     9      30.078  16.554  24.546  1.00  0.00              
ATOM     10  CA  ALA    10      33.115  18.096  26.144  1.00  0.00              
ATOM     11  CA  ILE    11      31.116  19.618  28.935  1.00  0.00              
ATOM     12  CA  GLU    12      29.437  16.344  29.678  1.00  0.00              
ATOM     13  CA  ALA    13      32.718  14.365  29.815  1.00  0.00              
ATOM     14  CA  LEU    14      34.247  16.948  32.143  1.00  0.00              
ATOM     15  CA  GLU    15      31.246  16.864  34.449  1.00  0.00              
ATOM     16  CA  ASP    16      31.264  13.099  34.623  1.00  0.00              
ATOM     17  CA  ILE    17      34.906  13.018  35.617  1.00  0.00              
ATOM     18  CA  LYS    18      34.505  15.745  38.265  1.00  0.00              
ATOM     19  CA  GLY    19      36.753  18.152  36.416  1.00  0.00              
ATOM     20  CA  LYS    20      36.573  21.787  37.379  1.00  0.00              
ATOM     21  CA  ASP    21      39.245  22.734  34.786  1.00  0.00              
ATOM     22  CA  ILE    22      38.367  20.846  31.668  1.00  0.00              
ATOM     23  CA  ILE    23      40.538  20.582  28.551  1.00  0.00              
ATOM     24  CA  GLU    24      38.970  19.594  25.291  1.00  0.00              
ATOM     25  CA  LEU    25      41.037  18.679  22.228  1.00  0.00              
ATOM     26  CA  ASP    26      39.455  18.643  18.823  1.00  0.00              
ATOM     27  CA  THR    27      40.905  16.197  16.347  1.00  0.00              
ATOM     28  CA  SER    28      37.732  15.463  14.279  1.00  0.00              
ATOM     29  CA  LYS    29      38.474  16.638  10.769  1.00  0.00              
ATOM     30  CA  LEU    30      42.066  15.322  10.819  1.00  0.00              
ATOM     31  CA  THR    31      43.675  18.098   8.815  1.00  0.00              
ATOM     32  CA  SER    32      42.026  20.737  11.002  1.00  0.00              
ATOM     33  CA  LEU    33      43.215  18.922  14.117  1.00  0.00              
ATOM     34  CA  PHE    34      46.796  19.198  12.862  1.00  0.00              
ATOM     35  CA  GLN    35      46.447  22.991  12.771  1.00  0.00              
ATOM     36  CA  ARG    36      45.046  22.754  16.238  1.00  0.00              
ATOM     37  CA  MET    37      41.920  23.675  18.161  1.00  0.00              
ATOM     38  CA  ILE    38      42.080  23.581  21.892  1.00  0.00              
ATOM     39  CA  VAL    39      39.110  24.176  23.954  1.00  0.00              
ATOM     40  CA  ALA    40      39.538  25.105  27.512  1.00  0.00              
ATOM     41  CA  THR    41      36.829  25.079  29.860  1.00  0.00              
ATOM     42  CA  GLY    42      37.339  26.914  33.046  1.00  0.00              
ATOM     43  CA  ASP    43      34.789  27.074  35.641  1.00  0.00              
ATOM     44  CA  SER    44      35.157  30.507  37.097  1.00  0.00              
ATOM     45  CA  ASN    45      36.097  33.887  35.805  1.00  0.00              
ATOM     46  CA  ARG    46      39.295  34.019  37.903  1.00  0.00              
ATOM     47  CA  GLN    47      40.398  30.623  36.572  1.00  0.00              
ATOM     48  CA  VAL    48      39.731  31.715  33.008  1.00  0.00              
ATOM     49  CA  LYS    49      41.698  34.914  33.411  1.00  0.00              
ATOM     50  CA  ALA    50      44.583  33.041  34.892  1.00  0.00              
ATOM     51  CA  LEU    51      44.555  30.572  31.963  1.00  0.00              
ATOM     52  CA  ALA    52      44.425  33.372  29.371  1.00  0.00              
ATOM     53  CA  ASN    53      47.323  35.113  30.998  1.00  0.00              
ATOM     54  CA  SER    54      49.327  31.850  30.973  1.00  0.00              
ATOM     55  CA  VAL    55      48.498  31.285  27.306  1.00  0.00              
ATOM     56  CA  GLN    56      49.511  34.786  26.405  1.00  0.00              
ATOM     57  CA  VAL    57      52.842  34.283  28.183  1.00  0.00              
ATOM     58  CA  LYS    58      53.402  30.958  26.397  1.00  0.00              
ATOM     59  CA  LEU    59      52.684  32.551  23.014  1.00  0.00              
ATOM     60  CA  LYS    60      55.010  35.411  23.693  1.00  0.00              
ATOM     61  CA  GLU    61      57.795  33.073  24.659  1.00  0.00              
ATOM     62  CA  ALA    62      57.450  31.171  21.376  1.00  0.00              
ATOM     63  CA  GLY    63      57.447  34.394  19.266  1.00  0.00              
ATOM     64  CA  VAL    64      53.778  34.146  18.436  1.00  0.00              
ATOM     65  CA  ASP    65      51.437  37.058  18.361  1.00  0.00              
ATOM     66  CA  ILE    66      48.547  36.621  20.700  1.00  0.00              
ATOM     67  CA  VAL    67      45.553  37.744  18.950  1.00  0.00              
ATOM     68  CA  GLY    68      42.820  38.255  21.483  1.00  0.00              
ATOM     69  CA  SER    69      39.214  37.934  20.601  1.00  0.00              
ATOM     70  CA  GLU    70      36.526  38.772  23.172  1.00  0.00              
ATOM     71  CA  GLY    71      33.124  37.229  22.612  1.00  0.00              
ATOM     72  CA  HIS    72      30.717  40.121  22.982  1.00  0.00              
ATOM     73  CA  GLU    73      29.291  39.360  26.388  1.00  0.00              
ATOM     74  CA  SER    74      26.516  37.056  25.209  1.00  0.00              
ATOM     75  CA  GLY    75      27.500  34.035  27.342  1.00  0.00              
ATOM     76  CA  GLU    76      31.292  34.391  27.524  1.00  0.00              
ATOM     77  CA  TRP    77      33.643  33.022  24.853  1.00  0.00              
ATOM     78  CA  VAL    78      37.188  34.161  24.624  1.00  0.00              
ATOM     79  CA  LEU    79      39.220  33.435  21.574  1.00  0.00              
ATOM     80  CA  VAL    80      42.904  33.362  21.743  1.00  0.00              
ATOM     81  CA  ASP    81      44.941  32.918  18.702  1.00  0.00              
ATOM     82  CA  ALA    82      48.223  31.472  19.162  1.00  0.00              
ATOM     83  CA  GLY    83      49.104  29.406  16.145  1.00  0.00              
ATOM     84  CA  ASP    84      46.827  26.440  17.034  1.00  0.00              
ATOM     85  CA  VAL    85      43.714  28.219  18.144  1.00  0.00              
ATOM     86  CA  VAL    86      42.719  28.263  21.675  1.00  0.00              
ATOM     87  CA  VAL    87      39.237  28.769  22.757  1.00  0.00              
ATOM     88  CA  HIS    88      38.233  29.598  26.159  1.00  0.00              
ATOM     89  CA  VAL    89      34.939  28.928  27.468  1.00  0.00              
ATOM     90  CA  MET    90      33.781  30.087  30.839  1.00  0.00              
ATOM     91  CA  LEU    91      31.029  28.298  32.634  1.00  0.00              
ATOM     92  CA  PRO    92      27.773  26.901  33.777  1.00  0.00              
ATOM     93  CA  ALA    93      25.953  30.209  34.430  1.00  0.00              
ATOM     94  CA  VAL    94      27.020  31.549  31.061  1.00  0.00              
ATOM     95  CA  ARG    95      25.829  28.446  29.176  1.00  0.00              
ATOM     96  CA  ASP    96      22.400  28.557  30.730  1.00  0.00              
ATOM     97  CA  TYR    97      21.953  32.270  29.956  1.00  0.00              
ATOM     98  CA  TYR    98      23.008  32.206  26.348  1.00  0.00              
ATOM     99  CA  ASP    99      21.305  29.047  25.015  1.00  0.00              
ATOM    100  CA  ILE   100      24.013  26.873  23.540  1.00  0.00              
ATOM    101  CA  GLU   101      22.792  27.179  19.914  1.00  0.00              
ATOM    102  CA  ALA   102      23.043  30.984  19.985  1.00  0.00              
ATOM    103  CA  LEU   103      26.531  30.957  21.388  1.00  0.00              
ATOM    104  CA  TRP   104      27.776  28.472  18.831  1.00  0.00              
ATOM    105  CA  GLY   105      26.531  30.631  16.006  1.00  0.00              
ATOM    106  CA  GLY   106      28.499  33.622  17.319  1.00  0.00              
ATOM    107  CA  GLN   107      31.844  31.833  17.661  1.00  0.00              
ATOM    108  CA  LYS   108      32.052  30.636  14.105  1.00  0.00              
ATOM    109  CA  PRO   109      34.300  27.628  14.061  1.00  0.00              
ATOM    110  CA  SER   110      36.698  28.320  11.270  1.00  0.00              
ATOM    111  CA  PHE   111      37.781  25.629   8.881  1.00  0.00              
ATOM    112  CA  ALA   112      41.462  26.316   8.505  1.00  0.00              
ATOM    113  CA  VAL   113      42.572  24.039   5.689  1.00  0.00              
ATOM    114  CA  GLY   114      46.262  25.016   5.486  1.00  0.00              
ATOM    115  CA  ALA   115      47.612  22.203   3.408  1.00  0.00              
ATOM    116  CA  ALA   116      45.755  19.068   4.260  1.00  0.00              
ATOM    117  CA  LYS   117      48.610  16.640   5.097  1.00  0.00              
ATOM    118  CA  PRO   118      48.483  15.815   8.764  1.00  0.00              
ATOM    119  CA  TRP   119      47.474  12.223   9.224  1.00  0.00              
ATOM    120  CA  SER   120      48.782  11.481  12.663  1.00  0.00              
ATOM    121  CA  ALA   121      46.021   9.200  14.038  1.00  0.00              
ATOM    122  CA  VAL   122      45.523  10.610  17.505  1.00  0.00              
ATOM    123  CA  LEU   123      41.885  10.978  18.680  1.00  0.00              
ATOM    124  CA  GLU   124      42.008   8.806  21.737  1.00  0.00              
ATOM    125  CA  HIS   125      40.760  11.234  24.377  1.00  0.00              
ATOM    126  CA  HIS   126      38.134   9.767  26.671  1.00  0.00              
ATOM    127  CA  HIS   127      37.510  13.278  28.073  1.00  0.00              
ATOM    128  CA  HIS   128      40.644  16.057  27.657  1.00  0.00              
ATOM    129  CA  HIS   129      43.902  16.291  25.307  1.00  0.00              
ATOM    130  CA  HIS   130      45.511  20.171  25.486  1.00  0.00              
TER                                                                             
END
