
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS599_3
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS599_3.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   110         1 - 110         4.90    14.63
  LCS_AVERAGE:     82.75

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        35 - 71          1.87    14.93
  LCS_AVERAGE:     20.03

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23         2 - 24          0.98    17.65
  LONGEST_CONTINUOUS_SEGMENT:    23        44 - 66          0.94    15.13
  LCS_AVERAGE:     11.29

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      0   26  110     0    0    3    4    8   14   27   36   48   85   92   97  101  104  106  106  106  106  107  107 
LCS_GDT     E       2     E       2     23   27  110    11   17   20   25   32   52   68   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I       3     I       3     23   27  110    11   17   23   25   33   53   75   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     Q       4     Q       4     23   27  110    11   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     E       5     E       5     23   27  110    11   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I       6     I       6     23   27  110     9   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     S       7     S       7     23   27  110    11   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     K       8     K       8     23   27  110    11   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L       9     L       9     23   27  110    11   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      10     A      10     23   27  110    11   17   23   33   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I      11     I      11     23   27  110    11   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     E      12     E      12     23   27  110    11   17   23   33   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      13     A      13     23   27  110    11   17   23   30   44   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      14     L      14     23   27  110     9   17   23   30   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     E      15     E      15     23   27  110     9   17   23   30   44   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      16     D      16     23   27  110    11   17   23   25   37   55   75   83   91   94  100  100  101  104  106  106  106  106  107  107 
LCS_GDT     I      17     I      17     23   27  110     3   17   23   29   44   64   79   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     K      18     K      18     23   27  110     4   17   23   30   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G      19     G      19     23   27  110     3   12   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     K      20     K      20     23   27  110     4   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      21     D      21     23   27  110     4   10   23   37   48   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I      22     I      22     23   27  110     8   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I      23     I      23     23   27  110     4   17   23   37   48   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     E      24     E      24     23   27  110     9   17   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      25     L      25     19   27  110    11   16   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      26     D      26     13   27  110     4   10   19   34   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     T      27     T      27      9   27  110     4    8   20   27   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     S      28     S      28      9   27  110     4    8   14   27   44   65   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     K      29     K      29      9   24  110     4    8   14   27   44   65   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      30     L      30      9   24  110     4    7   20   26   42   67   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     T      31     T      31      9   23  110     4    6   10   15   22   42   69   85   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     S      32     S      32      4   23  110     3   10   17   27   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      33     L      33      4   13  110     3    9   17   18   25   45   68   81   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     F      34     F      34      8   10  110     3    7    8    9   10   42   68   85   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     Q      35     Q      35      8   37  110     4   19   29   34   44   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     R      36     R      36      8   37  110     5   18   27   34   41   52   76   86   90   95  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     M      37     M      37      8   37  110     4   19   29   34   48   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I      38     I      38      8   37  110     4   11   20   32   41   53   76   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      39     V      39      8   37  110     6   19   29   34   45   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      40     A      40      8   37  110     4    7   20   28   37   52   76   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     T      41     T      41      8   37  110     3   13   26   34   41   65   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G      42     G      42      6   37  110     3    5   12   23   35   55   78   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      43     D      43     19   37  110     3   12   26   34   41   64   78   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     S      44     S      44     23   37  110     8   19   29   34   47   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     N      45     N      45     23   37  110     8   19   29   34   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     R      46     R      46     23   37  110     8   19   29   34   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     Q      47     Q      47     23   37  110     6   19   29   34   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      48     V      48     23   37  110     8   19   29   34   48   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     K      49     K      49     23   37  110     8   19   29   36   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      50     A      50     23   37  110     8   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      51     L      51     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      52     A      52     23   37  110     8   19   29   36   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     N      53     N      53     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     S      54     S      54     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      55     V      55     23   37  110    11   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     Q      56     Q      56     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      57     V      57     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     K      58     K      58     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      59     L      59     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     K      60     K      60     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     E      61     E      61     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      62     A      62     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G      63     G      63     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      64     V      64     23   37  110    12   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      65     D      65     23   37  110     9   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I      66     I      66     23   37  110     8   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      67     V      67      5   37  110     3    5   23   25   33   45   67   77   85   94  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G      68     G      68      5   37  110     4   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     S      69     S      69      5   37  110     4   10   19   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     E      70     E      70      5   37  110     4   10   19   31   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G      71     G      71      5   37  110     4   10   19   27   45   68   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     H      72     H      72      4    7  110     3    9   17   18   22   31   42   58   64   77   93  100  102  104  106  106  106  106  107  107 
LCS_GDT     E      73     E      73      5    7  110     3    5    7   13   22   29   42   53   64   80   93  100  102  104  106  106  106  106  107  107 
LCS_GDT     S      74     S      74      5    7  110     4    5    7   11   20   27   37   50   64   71   93   98  102  104  106  106  106  106  107  107 
LCS_GDT     G      75     G      75      5    7  110     4    5    7   11   17   29   42   58   74   80   94  100  102  104  106  106  106  106  107  107 
LCS_GDT     E      76     E      76      7    8  110     4    7   12   18   34   52   71   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     W      77     W      77      7   17  110     4    7   19   31   48   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      78     V      78      7   17  110     4    7   12   21   37   64   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      79     L      79      7   17  110     6   19   29   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      80     V      80      7   17  110     4    7   13   28   45   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      81     D      81      7   17  110     4    9   17   30   48   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      82     A      82      7   19  110     4   18   29   34   46   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G      83     G      83      4   20  110     3    7   17   30   47   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      84     D      84     14   20  110     6   13   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      85     V      85     14   20  110     6   16   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      86     V      86     14   20  110     6   10   23   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      87     V      87     14   20  110     6   10   22   37   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     H      88     H      88     14   20  110     6   10   19   28   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      89     V      89     14   20  110     7   11   19   27   45   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     M      90     M      90     14   20  110     8   11   19   27   46   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L      91     L      91     14   20  110     8   11   19   27   46   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     P      92     P      92     14   20  110     8   11   17   27   45   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A      93     A      93     14   20  110     8   11   17   27   48   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     V      94     V      94     14   20  110     8   11   17   23   46   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     R      95     R      95     14   20  110     8   11   20   28   51   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      96     D      96     14   20  110    10   17   20   28   51   65   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     Y      97     Y      97     14   20  110     8   11   17   21   30   64   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     Y      98     Y      98     14   20  110     8   11   17   18   25   34   47   82   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     D      99     D      99     13   20  110     4   11   15   18   26   34   42   65   90   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     I     100     I     100     12   20  110     4    6    7   13   16   22   28   38   49   75   93   97  101  104  106  106  106  106  107  107 
LCS_GDT     E     101     E     101     12   20  110     5    6   13   16   21   26   52   81   90   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     A     102     A     102      7   20  110     5    6   13   22   42   65   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     L     103     L     103      7   20  110     5    6    7    8   27   33   49   72   89   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     W     104     W     104      7    9  110     5    6    7    8    9   28   44   68   89   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G     105     G     105      7    9  110     5    6    7   26   47   69   80   86   91   96  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     G     106     G     106      3    6  110     3    3   25   34   41   64   76   86   91   94  100  100  102  104  106  106  106  106  107  107 
LCS_GDT     Q     107     Q     107      4    7  110     3    4    6    6    7   10   33   48   65   75   80   85   88   93   97  101  106  106  107  107 
LCS_GDT     K     108     K     108      4    7  110     3    4    6    6    7   10   11   20   23   38   52   62   73   78   84   91   97  100  103  107 
LCS_GDT     P     109     P     109      4    7  110     3    4    6    6    9   13   16   18   20   22   28   41   46   60   67   78   80   85   93   97 
LCS_GDT     S     110     S     110      4    7  110     3    4    5    5    7   10   11   13   16   18   19   21   22   25   27   31   42   46   61   66 
LCS_GDT     F     111     F     111      4    7   18     3    4    6    6    7   10   11   13   16   18   19   21   22   25   27   28   31   32   35   37 
LCS_GDT     A     112     A     112      4   11   18     3    4    6    6   11   11   11   13   16   17   18   20   22   25   27   27   30   31   33   37 
LCS_GDT     V     113     V     113      5   11   18     3    3    6    7   11   11   11   13   16   18   19   21   22   25   27   28   31   32   35   37 
LCS_GDT     G     114     G     114      5   11   18     4    4    5    7   11   11   11   13   16   18   19   21   22   25   27   28   31   32   35   37 
LCS_GDT     A     115     A     115      5   11   18     4    4    5    5   11   11   11   12   16   18   19   21   22   25   27   28   31   32   35   37 
LCS_GDT     A     116     A     116      5   11   18     4    4    5    6   11   11   11   12   16   18   19   21   22   25   27   28   31   32   35   37 
LCS_GDT     K     117     K     117      5   11   18     4    4    5    5   11   11   11   12   16   18   19   21   22   25   27   28   31   32   35   37 
LCS_GDT     P     118     P     118      5   11   18     4    4    5    7   11   11   11   12   13   13   14   16   22   24   26   28   30   32   35   37 
LCS_GDT     W     119     W     119      5   11   18     4    4    5    7   11   11   11   11   13   13   13   15   15   18   23   28   30   32   32   34 
LCS_GDT     S     120     S     120      5   11   18     4    4    5    7   11   11   11   12   13   13   14   18   22   24   26   28   31   32   35   37 
LCS_GDT     A     121     A     121      5   11   18     4    4    5    7   11   11   11   12   16   18   19   21   22   25   27   28   30   32   35   37 
LCS_GDT     V     122     V     122      5   11   18     3    4    5    7   11   11   11   12   16   18   19   21   22   25   27   28   31   32   35   37 
LCS_AVERAGE  LCS_A:  38.02  (  11.29   20.03   82.75 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     19     29     37     51     69     80     86     91     96    100    100    102    104    106    106    106    106    107    107 
GDT PERCENT_CA   9.84  15.57  23.77  30.33  41.80  56.56  65.57  70.49  74.59  78.69  81.97  81.97  83.61  85.25  86.89  86.89  86.89  86.89  87.70  87.70
GDT RMS_LOCAL    0.32   0.61   0.98   1.49   1.95   2.29   2.52   2.66   2.82   3.03   3.14   3.14   3.40   3.48   3.62   3.62   3.62   3.62   3.75   3.75
GDT RMS_ALL_CA  16.33  15.69  15.02  16.54  15.77  15.33  15.18  15.10  14.99  15.11  15.10  15.10  14.98  15.01  14.99  14.99  14.99  14.99  14.95  14.95

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          7.175
LGA    E       2      E       2          3.899
LGA    I       3      I       3          3.957
LGA    Q       4      Q       4          2.379
LGA    E       5      E       5          2.003
LGA    I       6      I       6          2.047
LGA    S       7      S       7          2.140
LGA    K       8      K       8          1.330
LGA    L       9      L       9          1.555
LGA    A      10      A      10          2.010
LGA    I      11      I      11          1.668
LGA    E      12      E      12          2.095
LGA    A      13      A      13          2.899
LGA    L      14      L      14          2.563
LGA    E      15      E      15          2.789
LGA    D      16      D      16          4.367
LGA    I      17      I      17          3.631
LGA    K      18      K      18          2.198
LGA    G      19      G      19          2.301
LGA    K      20      K      20          2.491
LGA    D      21      D      21          3.483
LGA    I      22      I      22          2.195
LGA    I      23      I      23          3.234
LGA    E      24      E      24          2.796
LGA    L      25      L      25          2.266
LGA    D      26      D      26          2.372
LGA    T      27      T      27          1.581
LGA    S      28      S      28          3.257
LGA    K      29      K      29          3.434
LGA    L      30      L      30          2.799
LGA    T      31      T      31          5.186
LGA    S      32      S      32          1.873
LGA    L      33      L      33          5.840
LGA    F      34      F      34          4.979
LGA    Q      35      Q      35          2.840
LGA    R      36      R      36          4.628
LGA    M      37      M      37          2.476
LGA    I      38      I      38          3.881
LGA    V      39      V      39          2.887
LGA    A      40      A      40          3.945
LGA    T      41      T      41          3.334
LGA    G      42      G      42          3.614
LGA    D      43      D      43          3.701
LGA    S      44      S      44          2.841
LGA    N      45      N      45          2.605
LGA    R      46      R      46          2.336
LGA    Q      47      Q      47          2.669
LGA    V      48      V      48          3.259
LGA    K      49      K      49          2.773
LGA    A      50      A      50          2.725
LGA    L      51      L      51          3.277
LGA    A      52      A      52          2.924
LGA    N      53      N      53          2.526
LGA    S      54      S      54          2.852
LGA    V      55      V      55          2.487
LGA    Q      56      Q      56          1.906
LGA    V      57      V      57          2.579
LGA    K      58      K      58          2.814
LGA    L      59      L      59          1.969
LGA    K      60      K      60          1.922
LGA    E      61      E      61          2.942
LGA    A      62      A      62          3.226
LGA    G      63      G      63          2.607
LGA    V      64      V      64          2.131
LGA    D      65      D      65          2.015
LGA    I      66      I      66          2.446
LGA    V      67      V      67          5.187
LGA    G      68      G      68          1.414
LGA    S      69      S      69          1.850
LGA    E      70      E      70          1.700
LGA    G      71      G      71          3.003
LGA    H      72      H      72          8.713
LGA    E      73      E      73          8.970
LGA    S      74      S      74          9.317
LGA    G      75      G      75          7.577
LGA    E      76      E      76          4.717
LGA    W      77      W      77          2.627
LGA    V      78      V      78          3.616
LGA    L      79      L      79          2.258
LGA    V      80      V      80          2.973
LGA    D      81      D      81          2.946
LGA    A      82      A      82          2.958
LGA    G      83      G      83          2.567
LGA    D      84      D      84          1.848
LGA    V      85      V      85          2.615
LGA    V      86      V      86          2.165
LGA    V      87      V      87          2.360
LGA    H      88      H      88          2.072
LGA    V      89      V      89          2.743
LGA    M      90      M      90          2.154
LGA    L      91      L      91          2.642
LGA    P      92      P      92          3.435
LGA    A      93      A      93          2.241
LGA    V      94      V      94          1.888
LGA    R      95      R      95          2.654
LGA    D      96      D      96          3.814
LGA    Y      97      Y      97          3.878
LGA    Y      98      Y      98          5.599
LGA    D      99      D      99          6.310
LGA    I     100      I     100          8.167
LGA    E     101      E     101          6.192
LGA    A     102      A     102          4.337
LGA    L     103      L     103          6.150
LGA    W     104      W     104          5.992
LGA    G     105      G     105          3.308
LGA    G     106      G     106          4.234
LGA    Q     107      Q     107         10.041
LGA    K     108      K     108         13.617
LGA    P     109      P     109         18.055
LGA    S     110      S     110         24.606
LGA    F     111      F     111         28.073
LGA    A     112      A     112         33.564
LGA    V     113      V     113         39.276
LGA    G     114      G     114         41.431
LGA    A     115      A     115         40.919
LGA    A     116      A     116         46.247
LGA    K     117      K     117         48.612
LGA    P     118      P     118         47.381
LGA    W     119      W     119         51.240
LGA    S     120      S     120         54.034
LGA    A     121      A     121         51.611
LGA    V     122      V     122         48.837

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     86    2.66    50.820    47.501     3.121

LGA_LOCAL      RMSD =  2.655  Number of atoms =   86  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.837  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 12.716  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.043659 * X  +   0.985562 * Y  +   0.163591 * Z  +  39.566971
  Y_new =  -0.993313 * X  +   0.060340 * Y  +  -0.098426 * Z  +  25.274168
  Z_new =  -0.106876 * X  +  -0.158200 * Y  +   0.981606 * Z  +  20.673306 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.159791    2.981802  [ DEG:    -9.1553    170.8447 ]
  Theta =   0.107080    3.034512  [ DEG:     6.1353    173.8647 ]
  Phi   =  -1.526872    1.614721  [ DEG:   -87.4833     92.5167 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS599_3                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS599_3.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   86   2.66  47.501    12.72
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS599_3
PFRMAT TS                                                                       
TARGET T0354                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      50.767  21.582  15.407  1.00  0.00              
ATOM      2  CA  GLU     2      52.649  24.358  17.349  1.00  0.00              
ATOM      3  CA  ILE     3      48.771  24.078  17.885  1.00  0.00              
ATOM      4  CA  GLN     4      48.490  20.352  19.822  1.00  0.00              
ATOM      5  CA  GLU     5      51.219  21.789  21.943  1.00  0.00              
ATOM      6  CA  ILE     6      49.387  24.839  22.765  1.00  0.00              
ATOM      7  CA  SER     7      46.252  23.059  23.839  1.00  0.00              
ATOM      8  CA  LYS     8      48.163  20.748  26.072  1.00  0.00              
ATOM      9  CA  LEU     9      50.049  23.623  27.668  1.00  0.00              
ATOM     10  CA  ALA    10      46.845  25.581  28.341  1.00  0.00              
ATOM     11  CA  ILE    11      45.200  22.552  29.826  1.00  0.00              
ATOM     12  CA  GLU    12      48.123  21.858  32.099  1.00  0.00              
ATOM     13  CA  ALA    13      48.378  25.392  33.314  1.00  0.00              
ATOM     14  CA  LEU    14      44.681  25.510  34.098  1.00  0.00              
ATOM     15  CA  GLU    15      44.816  22.265  35.994  1.00  0.00              
ATOM     16  CA  ASP    16      47.777  23.378  38.063  1.00  0.00              
ATOM     17  CA  ILE    17      46.242  26.665  39.044  1.00  0.00              
ATOM     18  CA  LYS    18      42.978  25.144  40.138  1.00  0.00              
ATOM     19  CA  GLY    19      40.733  26.475  37.286  1.00  0.00              
ATOM     20  CA  LYS    20      37.750  24.246  37.758  1.00  0.00              
ATOM     21  CA  ASP    21      36.122  23.815  34.430  1.00  0.00              
ATOM     22  CA  ILE    22      38.190  23.147  31.366  1.00  0.00              
ATOM     23  CA  ILE    23      36.714  21.451  28.275  1.00  0.00              
ATOM     24  CA  GLU    24      39.030  20.611  25.480  1.00  0.00              
ATOM     25  CA  LEU    25      37.917  19.746  21.998  1.00  0.00              
ATOM     26  CA  ASP    26      40.573  18.374  19.553  1.00  0.00              
ATOM     27  CA  THR    27      39.800  18.428  16.047  1.00  0.00              
ATOM     28  CA  SER    28      42.287  15.885  14.659  1.00  0.00              
ATOM     29  CA  LYS    29      39.868  13.731  12.638  1.00  0.00              
ATOM     30  CA  LEU    30      38.186  16.729  11.016  1.00  0.00              
ATOM     31  CA  THR    31      41.173  18.151   9.097  1.00  0.00              
ATOM     32  CA  SER    32      40.049  21.770   9.354  1.00  0.00              
ATOM     33  CA  LEU    33      39.462  21.279  13.082  1.00  0.00              
ATOM     34  CA  PHE    34      42.939  19.816  13.527  1.00  0.00              
ATOM     35  CA  GLN    35      44.442  23.007  12.177  1.00  0.00              
ATOM     36  CA  ARG    36      42.200  24.640  14.747  1.00  0.00              
ATOM     37  CA  MET    37      41.946  23.470  18.400  1.00  0.00              
ATOM     38  CA  ILE    38      38.958  24.625  20.554  1.00  0.00              
ATOM     39  CA  VAL    39      39.346  25.054  24.181  1.00  0.00              
ATOM     40  CA  ALA    40      36.335  25.688  26.301  1.00  0.00              
ATOM     41  CA  THR    41      36.899  27.182  29.552  1.00  0.00              
ATOM     42  CA  GLY    42      34.273  27.647  32.142  1.00  0.00              
ATOM     43  CA  ASP    43      35.967  28.771  35.300  1.00  0.00              
ATOM     44  CA  SER    44      35.550  31.996  36.972  1.00  0.00              
ATOM     45  CA  ASN    45      36.438  34.956  34.839  1.00  0.00              
ATOM     46  CA  ARG    46      39.422  35.952  36.987  1.00  0.00              
ATOM     47  CA  GLN    47      40.986  32.469  37.044  1.00  0.00              
ATOM     48  CA  VAL    48      40.629  32.278  33.289  1.00  0.00              
ATOM     49  CA  LYS    49      42.200  35.627  32.670  1.00  0.00              
ATOM     50  CA  ALA    50      45.221  34.681  34.711  1.00  0.00              
ATOM     51  CA  LEU    51      45.590  31.381  32.788  1.00  0.00              
ATOM     52  CA  ALA    52      45.238  33.146  29.447  1.00  0.00              
ATOM     53  CA  ASN    53      47.843  35.713  30.398  1.00  0.00              
ATOM     54  CA  SER    54      50.196  32.778  31.180  1.00  0.00              
ATOM     55  CA  VAL    55      49.376  31.201  27.822  1.00  0.00              
ATOM     56  CA  GLN    56      49.936  34.398  25.875  1.00  0.00              
ATOM     57  CA  VAL    57      53.361  34.667  27.439  1.00  0.00              
ATOM     58  CA  LYS    58      54.170  31.004  26.567  1.00  0.00              
ATOM     59  CA  LEU    59      53.057  31.482  22.999  1.00  0.00              
ATOM     60  CA  LYS    60      55.149  34.678  22.639  1.00  0.00              
ATOM     61  CA  GLU    61      58.224  32.938  23.988  1.00  0.00              
ATOM     62  CA  ALA    62      57.752  30.275  21.298  1.00  0.00              
ATOM     63  CA  GLY    63      57.401  32.806  18.563  1.00  0.00              
ATOM     64  CA  VAL    64      53.657  32.573  17.828  1.00  0.00              
ATOM     65  CA  ASP    65      52.292  35.988  16.834  1.00  0.00              
ATOM     66  CA  ILE    66      49.037  36.975  18.103  1.00  0.00              
ATOM     67  CA  VAL    67      46.694  37.091  20.817  1.00  0.00              
ATOM     68  CA  GLY    68      43.449  38.329  19.486  1.00  0.00              
ATOM     69  CA  SER    69      40.560  39.157  21.751  1.00  0.00              
ATOM     70  CA  GLU    70      37.111  39.324  20.301  1.00  0.00              
ATOM     71  CA  GLY    71      34.326  40.623  22.422  1.00  0.00              
ATOM     72  CA  HIS    72      31.201  38.645  21.374  1.00  0.00              
ATOM     73  CA  GLU    73      28.625  40.490  23.387  1.00  0.00              
ATOM     74  CA  SER    74      26.203  37.735  24.198  1.00  0.00              
ATOM     75  CA  GLY    75      27.806  36.214  27.250  1.00  0.00              
ATOM     76  CA  GLU    76      30.344  34.176  25.363  1.00  0.00              
ATOM     77  CA  TRP    77      33.904  35.567  24.987  1.00  0.00              
ATOM     78  CA  VAL    78      36.132  34.347  22.191  1.00  0.00              
ATOM     79  CA  LEU    79      39.907  34.376  22.565  1.00  0.00              
ATOM     80  CA  VAL    80      41.958  33.832  19.471  1.00  0.00              
ATOM     81  CA  ASP    81      45.491  32.659  19.800  1.00  0.00              
ATOM     82  CA  ALA    82      47.590  32.738  16.847  1.00  0.00              
ATOM     83  CA  GLY    83      48.753  29.202  15.881  1.00  0.00              
ATOM     84  CA  ASP    84      45.361  27.496  15.443  1.00  0.00              
ATOM     85  CA  VAL    85      44.130  27.878  19.029  1.00  0.00              
ATOM     86  CA  VAL    86      40.621  29.106  19.671  1.00  0.00              
ATOM     87  CA  VAL    87      39.722  29.761  23.312  1.00  0.00              
ATOM     88  CA  HIS    88      36.103  30.068  24.056  1.00  0.00              
ATOM     89  CA  VAL    89      35.212  31.549  27.294  1.00  0.00              
ATOM     90  CA  MET    90      31.709  30.855  28.443  1.00  0.00              
ATOM     91  CA  LEU    91      29.843  32.596  31.275  1.00  0.00              
ATOM     92  CA  PRO    92      28.036  30.528  33.945  1.00  0.00              
ATOM     93  CA  ALA    93      24.576  30.335  32.450  1.00  0.00              
ATOM     94  CA  VAL    94      25.922  29.197  29.028  1.00  0.00              
ATOM     95  CA  ARG    95      28.092  26.499  30.491  1.00  0.00              
ATOM     96  CA  ASP    96      25.366  24.931  32.570  1.00  0.00              
ATOM     97  CA  TYR    97      22.912  24.823  29.601  1.00  0.00              
ATOM     98  CA  TYR    98      25.313  23.216  27.150  1.00  0.00              
ATOM     99  CA  ASP    99      27.059  20.552  29.244  1.00  0.00              
ATOM    100  CA  ILE   100      30.763  21.266  28.645  1.00  0.00              
ATOM    101  CA  GLU   101      32.006  17.928  27.516  1.00  0.00              
ATOM    102  CA  ALA   102      29.142  17.665  24.983  1.00  0.00              
ATOM    103  CA  LEU   103      29.800  21.150  23.577  1.00  0.00              
ATOM    104  CA  TRP   104      33.558  20.482  23.180  1.00  0.00              
ATOM    105  CA  GLY   105      32.944  17.227  21.384  1.00  0.00              
ATOM    106  CA  GLY   106      30.643  19.025  19.011  1.00  0.00              
ATOM    107  CA  GLN   107      32.841  21.993  17.981  1.00  0.00              
ATOM    108  CA  LYS   108      31.813  22.251  14.390  1.00  0.00              
ATOM    109  CA  PRO   109      31.453  18.678  13.241  1.00  0.00              
ATOM    110  CA  SER   110      32.471  18.933   9.558  1.00  0.00              
ATOM    111  CA  PHE   111      30.545  16.525   7.381  1.00  0.00              
ATOM    112  CA  ALA   112      32.931  14.616   5.233  1.00  0.00              
ATOM    113  CA  VAL   113      31.737  14.386   1.589  1.00  0.00              
ATOM    114  CA  GLY   114      33.207  11.110   0.492  1.00  0.00              
ATOM    115  CA  ALA   115      30.549   9.708  -1.885  1.00  0.00              
ATOM    116  CA  ALA   116      32.349   8.817  -5.129  1.00  0.00              
ATOM    117  CA  LYS   117      31.772   5.119  -5.429  1.00  0.00              
ATOM    118  CA  PRO   118      35.049   3.288  -5.389  1.00  0.00              
ATOM    119  CA  TRP   119      36.586   2.209  -8.630  1.00  0.00              
ATOM    120  CA  SER   120      38.400   5.418  -9.632  1.00  0.00              
ATOM    121  CA  ALA   121      38.821   7.003  -6.175  1.00  0.00              
ATOM    122  CA  VAL   122      36.894  10.204  -5.761  1.00  0.00              
ATOM    123  CA  LEU   123      38.178  11.886  -2.611  1.00  0.00              
ATOM    124  CA  GLU   124      38.495  15.462  -3.931  1.00  0.00              
ATOM    125  CA  HIS   125      36.124  17.212  -1.510  1.00  0.00              
ATOM    126  CA  HIS   126      33.648  19.132  -3.701  1.00  0.00              
ATOM    127  CA  HIS   127      32.831  21.196  -0.585  1.00  0.00              
ATOM    128  CA  HIS   128      33.521  19.352   3.153  1.00  0.00              
ATOM    129  CA  HIS   129      34.451  23.194   4.581  1.00  0.00              
ATOM    130  CA  HIS   130      35.481  22.842   8.038  1.00  0.00              
TER                                                                             
END
