
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS599_4
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS599_4.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104         1 - 104         4.76    11.12
  LONGEST_CONTINUOUS_SEGMENT:   104         2 - 105         4.99    11.12
  LCS_AVERAGE:     75.64

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        35 - 70          1.89    11.11
  LCS_AVERAGE:     18.56

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        44 - 68          0.95    11.65
  LCS_AVERAGE:     11.25

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      3   26  104     0    2    4    4    5   17   24   35   63   80   86   91   93   96   98   98   99  101  102  102 
LCS_GDT     E       2     E       2     22   27  104     7   15   20   23   38   43   57   67   78   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I       3     I       3     22   27  104     8   15   21   23   38   43   47   67   78   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     Q       4     Q       4     22   27  104    13   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     E       5     E       5     22   27  104    13   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I       6     I       6     22   27  104    13   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     S       7     S       7     22   27  104    13   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     K       8     K       8     22   27  104    13   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L       9     L       9     22   27  104    13   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      10     A      10     22   27  104    13   17   21   24   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I      11     I      11     22   27  104    13   17   21   24   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     E      12     E      12     22   27  104    13   17   21   25   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      13     A      13     22   27  104    13   17   21   24   38   51   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      14     L      14     22   27  104    13   17   21   24   38   51   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     E      15     E      15     22   27  104    13   17   21   24   37   51   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      16     D      16     22   27  104    13   17   21   24   35   48   61   74   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I      17     I      17     22   27  104     5   17   21   24   38   50   63   75   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     K      18     K      18     22   27  104     5   17   21   25   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     G      19     G      19     22   27  104     3   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     K      20     K      20     22   27  104     4   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      21     D      21     22   27  104     4   11   19   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I      22     I      22     22   27  104     4   11   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I      23     I      23     22   27  104     4    8   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     E      24     E      24     22   27  104    10   17   21   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      25     L      25     22   27  104     5   15   20   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      26     D      26     16   27  104     4   11   19   30   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     T      27     T      27      9   27  104     6   13   19   29   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     S      28     S      28      9   27  104     6    9   17   26   38   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     K      29     K      29      9   26  104     6    9   17   26   38   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      30     L      30      9   25  104     4   15   25   29   38   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     T      31     T      31      9   24  104     4    7   17   23   35   45   63   77   84   89   91   93   93   96   98   98   98  101  102  102 
LCS_GDT     S      32     S      32      4   23  104     3    9   15   28   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      33     L      33      4   12  104     3    4    4    5   14   33   42   58   76   86   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     F      34     F      34      9   10  104     3    7    8   10   19   37   56   76   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     Q      35     Q      35      9   36  104     6   19   28   32   37   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     R      36     R      36      9   36  104     4   10   24   32   37   40   57   67   82   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     M      37     M      37      9   36  104     6   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I      38     I      38      9   36  104     4    7   18   29   37   45   60   76   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      39     V      39      9   36  104     4   14   27   32   37   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      40     A      40      9   36  104     4    8   14   29   37   46   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     T      41     T      41      9   36  104     3    6   23   32   37   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     G      42     G      42      9   36  104     3    5   10   14   34   43   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      43     D      43     21   36  104     3   14   27   32   37   43   61   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     S      44     S      44     25   36  104     3   19   28   32   37   51   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     N      45     N      45     25   36  104     9   19   28   32   37   51   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     R      46     R      46     25   36  104     9   19   28   32   38   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     Q      47     Q      47     25   36  104     9   19   28   32   38   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      48     V      48     25   36  104     8   19   28   32   37   51   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     K      49     K      49     25   36  104    11   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      50     A      50     25   36  104    11   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      51     L      51     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      52     A      52     25   36  104    11   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     N      53     N      53     25   36  104    11   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     S      54     S      54     25   36  104    12   18   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      55     V      55     25   36  104    11   17   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     Q      56     Q      56     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      57     V      57     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     K      58     K      58     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      59     L      59     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     K      60     K      60     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     E      61     E      61     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      62     A      62     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     G      63     G      63     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      64     V      64     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      65     D      65     25   36  104    12   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     I      66     I      66     25   36  104     3   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      67     V      67     25   36  104    10   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     G      68     G      68     25   36  104     4   15   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     S      69     S      69      5   36  104     4    7   13   23   32   46   63   76   83   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     E      70     E      70      5   36  104     4    5   13   23   36   50   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     G      71     G      71      5   12  104     4    6    9   13   23   33   49   62   79   84   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     H      72     H      72      4    7  104     4    4    4    6    6   16   23   31   42   45   53   66   71   77   91   94   95   98  100  100 
LCS_GDT     E      73     E      73      4    7  104     4    4    4    6    6   10   12   28   34   41   50   62   70   82   92   94   95   98  100  100 
LCS_GDT     S      74     S      74      4    7  104     4    6    9   12   20   30   42   57   68   82   86   93   93   95   98   98   99  101  102  102 
LCS_GDT     G      75     G      75      3    7  104     4    6    9   12   17   26   39   52   63   80   85   93   93   95   98   98   99  101  102  102 
LCS_GDT     E      76     E      76      8   17  104     7    8   13   21   35   44   60   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     W      77     W      77      8   17  104     7    9   13   26   35   44   60   73   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      78     V      78      8   17  104     7    9   14   26   35   46   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      79     L      79      8   17  104     7    9   17   26   35   44   60   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      80     V      80      8   17  104     7    9   17   26   35   46   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      81     D      81      8   17  104     7    9   13   21   35   44   60   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      82     A      82      8   17  104     7    9   14   26   35   49   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     G      83     G      83      8   17  104     4    9   13   23   35   48   59   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      84     D      84      8   17  104    11   14   25   28   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      85     V      85      8   17  104     5   19   27   32   37   47   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      86     V      86      8   17  104     7   19   28   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      87     V      87      8   17  104     5    7   15   29   37   46   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     H      88     H      88      8   17  104     5   14   27   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      89     V      89      8   17  104     5    7    9   19   32   44   63   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     M      90     M      90      8   17  104     5    8   20   32   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     L      91     L      91     10   17  104     8    9   12   21   36   46   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     P      92     P      92     10   17  104     8    9   14   26   36   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     A      93     A      93     10   13  104     8   11   17   27   39   52   64   77   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     V      94     V      94     10   13  104     8    9   10   20   35   52   64   76   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     R      95     R      95     10   13  104     8    9   10   12   23   38   56   72   83   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     D      96     D      96     10   13  104     8    9   10   12   18   47   60   72   84   89   91   93   93   96   98   98   99  101  102  102 
LCS_GDT     Y      97     Y      97     10   13  104     8    9   10   12   15   24   57   67   78   87   90   92   93   96   98   98   99  101  102  102 
LCS_GDT     Y      98     Y      98     10   13  104     8    9   10   12   13   16   21   29   38   71   85   89   93   96   98   98   99  101  102  102 
LCS_GDT     D      99     D      99     10   13  104     4    9   10   12   13   16   19   26   32   39   69   88   91   96   98   98   99  101  102  102 
LCS_GDT     I     100     I     100     10   13  104     4    7   10   12   12   16   18   20   30   39   69   88   91   96   98   98   99  101  102  102 
LCS_GDT     E     101     E     101      7   13  104     5    7    7   10   11   15   17   22   27   30   36   43   51   85   90   95   99  101  102  102 
LCS_GDT     A     102     A     102      7    9  104     5    7    7    7    9   13   18   23   27   33   41   46   54   70   90   94   97  101  102  102 
LCS_GDT     L     103     L     103      7    9  104     5    7    7    7    7    8    9   12   46   56   58   69   80   83   87   94   97  101  102  102 
LCS_GDT     W     104     W     104      7    9  104     5    7    7    7    7    8   19   24   29   34   42   66   71   83   90   94   99  101  102  102 
LCS_GDT     G     105     G     105      7    9  104     5    7    7    7    9   11   15   20   25   28   36   40   46   52   59   62   85   92   95   98 
LCS_GDT     G     106     G     106      5    8   22     3    5    5    7    8    9   10   14   16   18   22   27   35   40   44   49   58   61   65   77 
LCS_GDT     Q     107     Q     107      5    8   21     3    5    6    7    9   11   15   17   23   25   29   32   38   41   62   67   71   76   81   87 
LCS_GDT     K     108     K     108      5    8   21     3    5    6    7    8    9   17   18   22   24   27   31   38   41   59   67   74   80   84   92 
LCS_GDT     P     109     P     109      5    8   21     3    5    6    7    8    8   10   14   16   18   21   22   27   37   42   44   49   78   81   88 
LCS_GDT     S     110     S     110      5    8   21     3    5    5    6    8    9   10   14   16   18   21   22   24   25   27   27   28   33   37   44 
LCS_GDT     F     111     F     111      4    8   21     3    4    6    7    8    9   10   14   16   18   21   22   24   25   27   27   30   34   41   46 
LCS_GDT     A     112     A     112      4    8   21     3    5    6    7    8    9   10   14   16   18   21   22   24   25   27   27   28   30   33   36 
LCS_GDT     V     113     V     113      3    8   21     3    5    6    7    8    9   10   14   16   18   21   22   24   25   27   27   28   30   33   36 
LCS_GDT     G     114     G     114      3    8   21     3    4    4    4    7    8   10   14   16   18   21   22   24   25   27   27   28   30   33   36 
LCS_GDT     A     115     A     115      3    5   21     3    3    3    4    5    7    8    8   13   17   21   22   24   25   27   27   28   32   34   36 
LCS_GDT     A     116     A     116      3    5   21     3    3    4    4    5    6   10   14   16   18   21   22   24   25   27   27   28   32   34   36 
LCS_GDT     K     117     K     117      3    5   21     3    3    4    4    5    6   10   14   16   18   21   22   24   25   27   36   43   47   49   50 
LCS_GDT     P     118     P     118      3    5   21     3    3    4    4    5    6   10   14   16   17   21   22   24   26   30   36   54   56   61   63 
LCS_GDT     W     119     W     119      3    5   21     3    3    3    4    5    6    7    7    9   11   13   30   37   40   44   46   51   56   61   80 
LCS_GDT     S     120     S     120      3    5   21     3    3    3    4    5    6    7    7    9   11   13   15   20   23   29   36   43   47   61   61 
LCS_GDT     A     121     A     121      3    4   12     3    3    3    4    4    4    6    7    9   15   17   20   37   40   44   46   54   56   61   64 
LCS_GDT     V     122     V     122      3    4   10     0    3    3    4    4    4    6    7   13   15   17   30   37   41   44   51   73   76   80   87 
LCS_AVERAGE  LCS_A:  35.15  (  11.25   18.56   75.64 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     19     28     32     39     52     64     77     84     89     91     93     93     96     98     98     99    101    102    102 
GDT PERCENT_CA  10.66  15.57  22.95  26.23  31.97  42.62  52.46  63.11  68.85  72.95  74.59  76.23  76.23  78.69  80.33  80.33  81.15  82.79  83.61  83.61
GDT RMS_LOCAL    0.31   0.70   0.93   1.09   1.83   2.23   2.50   2.87   3.01   3.16   3.27   3.43   3.43   3.65   3.80   3.80   4.13   4.28   4.44   4.44
GDT RMS_ALL_CA  14.03  11.86  11.57  11.37  12.09  11.41  11.38  11.01  11.00  11.01  11.01  10.94  10.94  11.15  11.08  11.08  11.14  11.16  11.19  11.19

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          9.516
LGA    E       2      E       2          5.947
LGA    I       3      I       3          5.860
LGA    Q       4      Q       4          3.891
LGA    E       5      E       5          2.967
LGA    I       6      I       6          3.164
LGA    S       7      S       7          3.282
LGA    K       8      K       8          1.602
LGA    L       9      L       9          2.021
LGA    A      10      A      10          3.121
LGA    I      11      I      11          2.732
LGA    E      12      E      12          2.436
LGA    A      13      A      13          3.557
LGA    L      14      L      14          3.935
LGA    E      15      E      15          3.662
LGA    D      16      D      16          4.656
LGA    I      17      I      17          4.541
LGA    K      18      K      18          3.559
LGA    G      19      G      19          3.304
LGA    K      20      K      20          3.380
LGA    D      21      D      21          3.721
LGA    I      22      I      22          2.694
LGA    I      23      I      23          3.850
LGA    E      24      E      24          3.611
LGA    L      25      L      25          3.507
LGA    D      26      D      26          3.359
LGA    T      27      T      27          1.818
LGA    S      28      S      28          3.047
LGA    K      29      K      29          2.950
LGA    L      30      L      30          0.875
LGA    T      31      T      31          2.714
LGA    S      32      S      32          3.478
LGA    L      33      L      33          6.292
LGA    F      34      F      34          4.306
LGA    Q      35      Q      35          3.357
LGA    R      36      R      36          5.559
LGA    M      37      M      37          1.689
LGA    I      38      I      38          4.121
LGA    V      39      V      39          2.144
LGA    A      40      A      40          3.371
LGA    T      41      T      41          2.102
LGA    G      42      G      42          3.072
LGA    D      43      D      43          3.739
LGA    S      44      S      44          3.937
LGA    N      45      N      45          3.682
LGA    R      46      R      46          3.112
LGA    Q      47      Q      47          3.298
LGA    V      48      V      48          3.582
LGA    K      49      K      49          2.738
LGA    A      50      A      50          2.412
LGA    L      51      L      51          3.023
LGA    A      52      A      52          2.450
LGA    N      53      N      53          1.709
LGA    S      54      S      54          2.150
LGA    V      55      V      55          2.026
LGA    Q      56      Q      56          1.132
LGA    V      57      V      57          1.358
LGA    K      58      K      58          1.927
LGA    L      59      L      59          1.422
LGA    K      60      K      60          1.501
LGA    E      61      E      61          2.104
LGA    A      62      A      62          2.848
LGA    G      63      G      63          3.011
LGA    V      64      V      64          2.521
LGA    D      65      D      65          2.546
LGA    I      66      I      66          2.932
LGA    V      67      V      67          3.078
LGA    G      68      G      68          2.946
LGA    S      69      S      69          4.144
LGA    E      70      E      70          3.113
LGA    G      71      G      71          5.860
LGA    H      72      H      72         12.066
LGA    E      73      E      73         12.442
LGA    S      74      S      74          7.105
LGA    G      75      G      75          7.200
LGA    E      76      E      76          3.778
LGA    W      77      W      77          4.078
LGA    V      78      V      78          3.212
LGA    L      79      L      79          3.762
LGA    V      80      V      80          2.924
LGA    D      81      D      81          3.716
LGA    A      82      A      82          2.786
LGA    G      83      G      83          3.523
LGA    D      84      D      84          0.867
LGA    V      85      V      85          3.616
LGA    V      86      V      86          1.069
LGA    V      87      V      87          3.734
LGA    H      88      H      88          2.046
LGA    V      89      V      89          3.790
LGA    M      90      M      90          1.810
LGA    L      91      L      91          2.926
LGA    P      92      P      92          2.342
LGA    A      93      A      93          3.922
LGA    V      94      V      94          4.018
LGA    R      95      R      95          5.478
LGA    D      96      D      96          5.947
LGA    Y      97      Y      97          7.893
LGA    Y      98      Y      98          9.297
LGA    D      99      D      99         10.329
LGA    I     100      I     100          9.893
LGA    E     101      E     101         14.170
LGA    A     102      A     102         16.077
LGA    L     103      L     103         14.402
LGA    W     104      W     104         14.732
LGA    G     105      G     105         19.694
LGA    G     106      G     106         21.413
LGA    Q     107      Q     107         20.836
LGA    K     108      K     108         19.953
LGA    P     109      P     109         20.233
LGA    S     110      S     110         24.621
LGA    F     111      F     111         24.792
LGA    A     112      A     112         28.988
LGA    V     113      V     113         33.874
LGA    G     114      G     114         34.636
LGA    A     115      A     115         32.505
LGA    A     116      A     116         31.864
LGA    K     117      K     117         29.124
LGA    P     118      P     118         22.665
LGA    W     119      W     119         19.689
LGA    S     120      S     120         22.242
LGA    A     121      A     121         19.282
LGA    V     122      V     122         18.592

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     77    2.87    46.311    42.339     2.593

LGA_LOCAL      RMSD =  2.869  Number of atoms =   77  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.825  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 10.198  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.299130 * X  +   0.908297 * Y  +   0.292435 * Z  +  37.639877
  Y_new =   0.867885 * X  +  -0.386356 * Y  +   0.312257 * Z  +  27.771147
  Z_new =   0.396605 * X  +   0.160395 * Y  +  -0.903868 * Z  +  23.692978 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.965967   -0.175625  [ DEG:   169.9374    -10.0626 ]
  Theta =  -0.407816   -2.733777  [ DEG:   -23.3661   -156.6339 ]
  Phi   =   1.238881   -1.902711  [ DEG:    70.9827   -109.0173 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS599_4                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS599_4.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   77   2.87  42.339    10.20
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS599_4
PFRMAT TS                                                                       
TARGET T0354                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      48.119  19.869  17.143  1.00  0.00              
ATOM      2  CA  GLU     2      49.474  23.842  17.382  1.00  0.00              
ATOM      3  CA  ILE     3      46.334  23.910  19.087  1.00  0.00              
ATOM      4  CA  GLN     4      46.910  20.785  20.766  1.00  0.00              
ATOM      5  CA  GLU     5      50.234  21.851  22.408  1.00  0.00              
ATOM      6  CA  ILE     6      48.563  24.966  23.608  1.00  0.00              
ATOM      7  CA  SER     7      45.667  22.949  25.113  1.00  0.00              
ATOM      8  CA  LYS     8      48.161  20.809  27.019  1.00  0.00              
ATOM      9  CA  LEU     9      49.975  23.906  28.337  1.00  0.00              
ATOM     10  CA  ALA    10      46.703  25.472  29.480  1.00  0.00              
ATOM     11  CA  ILE    11      45.633  22.283  31.192  1.00  0.00              
ATOM     12  CA  GLU    12      48.888  21.876  33.039  1.00  0.00              
ATOM     13  CA  ALA    13      48.809  25.501  34.231  1.00  0.00              
ATOM     14  CA  LEU    14      45.239  25.107  35.387  1.00  0.00              
ATOM     15  CA  GLU    15      46.003  21.964  37.291  1.00  0.00              
ATOM     16  CA  ASP    16      48.941  23.703  38.963  1.00  0.00              
ATOM     17  CA  ILE    17      46.696  26.544  40.108  1.00  0.00              
ATOM     18  CA  LYS    18      43.702  24.478  41.172  1.00  0.00              
ATOM     19  CA  GLY    19      41.286  25.579  38.367  1.00  0.00              
ATOM     20  CA  LYS    20      38.484  23.121  38.643  1.00  0.00              
ATOM     21  CA  ASP    21      36.585  23.499  35.444  1.00  0.00              
ATOM     22  CA  ILE    22      38.286  23.435  32.101  1.00  0.00              
ATOM     23  CA  ILE    23      36.579  21.871  29.048  1.00  0.00              
ATOM     24  CA  GLU    24      38.654  21.119  26.022  1.00  0.00              
ATOM     25  CA  LEU    25      37.034  20.363  22.694  1.00  0.00              
ATOM     26  CA  ASP    26      39.190  18.821  20.042  1.00  0.00              
ATOM     27  CA  THR    27      38.234  19.122  16.579  1.00  0.00              
ATOM     28  CA  SER    28      40.527  16.614  14.858  1.00  0.00              
ATOM     29  CA  LYS    29      38.001  14.736  12.799  1.00  0.00              
ATOM     30  CA  LEU    30      36.106  17.521  11.146  1.00  0.00              
ATOM     31  CA  THR    31      38.798  19.376   9.217  1.00  0.00              
ATOM     32  CA  SER    32      37.470  22.859  10.010  1.00  0.00              
ATOM     33  CA  LEU    33      37.274  21.932  13.691  1.00  0.00              
ATOM     34  CA  PHE    34      40.830  20.621  13.668  1.00  0.00              
ATOM     35  CA  GLN    35      42.301  23.946  12.527  1.00  0.00              
ATOM     36  CA  ARG    36      40.305  25.548  15.345  1.00  0.00              
ATOM     37  CA  MET    37      40.442  24.266  18.970  1.00  0.00              
ATOM     38  CA  ILE    38      37.738  25.393  21.453  1.00  0.00              
ATOM     39  CA  VAL    39      38.500  25.786  25.081  1.00  0.00              
ATOM     40  CA  ALA    40      35.730  26.146  27.453  1.00  0.00              
ATOM     41  CA  THR    41      36.499  27.452  30.881  1.00  0.00              
ATOM     42  CA  GLY    42      33.978  27.444  33.629  1.00  0.00              
ATOM     43  CA  ASP    43      35.934  27.459  36.804  1.00  0.00              
ATOM     44  CA  SER    44      35.144  30.655  38.639  1.00  0.00              
ATOM     45  CA  ASN    45      35.762  33.628  36.421  1.00  0.00              
ATOM     46  CA  ARG    46      38.815  34.787  38.230  1.00  0.00              
ATOM     47  CA  GLN    47      40.688  31.497  37.954  1.00  0.00              
ATOM     48  CA  VAL    48      40.047  31.146  34.245  1.00  0.00              
ATOM     49  CA  LYS    49      41.139  34.766  33.605  1.00  0.00              
ATOM     50  CA  ALA    50      44.345  34.306  35.534  1.00  0.00              
ATOM     51  CA  LEU    51      45.050  31.067  33.563  1.00  0.00              
ATOM     52  CA  ALA    52      44.356  32.805  30.229  1.00  0.00              
ATOM     53  CA  ASN    53      46.684  35.630  31.118  1.00  0.00              
ATOM     54  CA  SER    54      49.403  33.052  31.889  1.00  0.00              
ATOM     55  CA  VAL    55      48.790  31.299  28.625  1.00  0.00              
ATOM     56  CA  GLN    56      48.859  34.588  26.678  1.00  0.00              
ATOM     57  CA  VAL    57      52.277  35.387  28.152  1.00  0.00              
ATOM     58  CA  LYS    58      53.568  31.896  27.272  1.00  0.00              
ATOM     59  CA  LEU    59      52.248  32.242  23.753  1.00  0.00              
ATOM     60  CA  LYS    60      53.867  35.694  23.350  1.00  0.00              
ATOM     61  CA  GLU    61      57.163  34.235  24.406  1.00  0.00              
ATOM     62  CA  ALA    62      56.719  31.498  21.789  1.00  0.00              
ATOM     63  CA  GLY    63      55.879  33.977  19.088  1.00  0.00              
ATOM     64  CA  VAL    64      52.131  33.308  18.814  1.00  0.00              
ATOM     65  CA  ASP    65      50.184  36.383  17.868  1.00  0.00              
ATOM     66  CA  ILE    66      47.161  37.244  19.943  1.00  0.00              
ATOM     67  CA  VAL    67      44.369  37.668  17.625  1.00  0.00              
ATOM     68  CA  GLY    68      41.407  38.812  19.621  1.00  0.00              
ATOM     69  CA  SER    69      37.932  37.621  18.852  1.00  0.00              
ATOM     70  CA  GLU    70      34.811  39.159  20.267  1.00  0.00              
ATOM     71  CA  GLY    71      31.711  37.088  19.888  1.00  0.00              
ATOM     72  CA  HIS    72      28.918  39.372  18.850  1.00  0.00              
ATOM     73  CA  GLU    73      26.223  38.548  21.446  1.00  0.00              
ATOM     74  CA  SER    74      28.343  39.511  24.470  1.00  0.00              
ATOM     75  CA  GLY    75      29.010  36.251  26.194  1.00  0.00              
ATOM     76  CA  GLU    76      32.734  36.014  26.258  1.00  0.00              
ATOM     77  CA  TRP    77      34.697  34.934  23.144  1.00  0.00              
ATOM     78  CA  VAL    78      38.432  35.104  23.158  1.00  0.00              
ATOM     79  CA  LEU    79      40.483  34.421  20.031  1.00  0.00              
ATOM     80  CA  VAL    80      44.064  33.414  20.459  1.00  0.00              
ATOM     81  CA  ASP    81      46.223  32.984  17.535  1.00  0.00              
ATOM     82  CA  ALA    82      49.021  30.623  18.047  1.00  0.00              
ATOM     83  CA  GLY    83      49.686  28.416  15.079  1.00  0.00              
ATOM     84  CA  ASP    84      46.551  26.258  15.015  1.00  0.00              
ATOM     85  CA  VAL    85      43.909  28.726  16.268  1.00  0.00              
ATOM     86  CA  VAL    86      42.718  28.547  19.830  1.00  0.00              
ATOM     87  CA  VAL    87      39.260  29.786  20.631  1.00  0.00              
ATOM     88  CA  HIS    88      38.548  30.457  24.245  1.00  0.00              
ATOM     89  CA  VAL    89      35.021  30.635  25.207  1.00  0.00              
ATOM     90  CA  MET    90      34.108  31.900  28.631  1.00  0.00              
ATOM     91  CA  LEU    91      30.478  31.695  29.771  1.00  0.00              
ATOM     92  CA  PRO    92      28.955  29.608  32.490  1.00  0.00              
ATOM     93  CA  ALA    93      26.635  32.295  33.758  1.00  0.00              
ATOM     94  CA  VAL    94      25.420  33.313  30.355  1.00  0.00              
ATOM     95  CA  ARG    95      24.714  29.849  29.017  1.00  0.00              
ATOM     96  CA  ASP    96      22.720  28.629  31.949  1.00  0.00              
ATOM     97  CA  TYR    97      20.805  31.916  32.187  1.00  0.00              
ATOM     98  CA  TYR    98      19.847  32.224  28.597  1.00  0.00              
ATOM     99  CA  ASP    99      18.884  28.687  27.479  1.00  0.00              
ATOM    100  CA  ILE   100      21.154  27.259  24.832  1.00  0.00              
ATOM    101  CA  GLU   101      19.014  27.786  21.770  1.00  0.00              
ATOM    102  CA  ALA   102      18.742  31.510  22.590  1.00  0.00              
ATOM    103  CA  LEU   103      22.489  31.914  23.103  1.00  0.00              
ATOM    104  CA  TRP   104      23.403  30.169  19.820  1.00  0.00              
ATOM    105  CA  GLY   105      20.937  32.338  17.902  1.00  0.00              
ATOM    106  CA  GLY   106      22.246  35.592  19.405  1.00  0.00              
ATOM    107  CA  GLN   107      25.938  34.882  18.711  1.00  0.00              
ATOM    108  CA  LYS   108      25.587  33.925  15.091  1.00  0.00              
ATOM    109  CA  PRO   109      26.527  30.242  15.017  1.00  0.00              
ATOM    110  CA  SER   110      28.394  29.877  11.766  1.00  0.00              
ATOM    111  CA  PHE   111      28.059  26.465  10.230  1.00  0.00              
ATOM    112  CA  ALA   112      31.527  25.774   8.996  1.00  0.00              
ATOM    113  CA  VAL   113      31.538  24.089   5.559  1.00  0.00              
ATOM    114  CA  GLY   114      35.075  22.893   5.162  1.00  0.00              
ATOM    115  CA  ALA   115      34.511  19.107   5.110  1.00  0.00              
ATOM    116  CA  ALA   116      31.058  18.553   6.639  1.00  0.00              
ATOM    117  CA  LYS   117      30.915  17.918  10.315  1.00  0.00              
ATOM    118  CA  PRO   118      28.011  19.756  11.801  1.00  0.00              
ATOM    119  CA  TRP   119      28.538  22.708  14.025  1.00  0.00              
ATOM    120  CA  SER   120      29.028  21.207  17.417  1.00  0.00              
ATOM    121  CA  ALA   121      26.840  23.217  19.863  1.00  0.00              
ATOM    122  CA  VAL   122      24.636  20.693  21.572  1.00  0.00              
ATOM    123  CA  LEU   123      22.817  22.502  24.339  1.00  0.00              
ATOM    124  CA  GLU   124      23.612  19.981  27.135  1.00  0.00              
ATOM    125  CA  HIS   125      27.317  19.782  26.339  1.00  0.00              
ATOM    126  CA  HIS   126      29.138  19.733  29.712  1.00  0.00              
ATOM    127  CA  HIS   127      32.347  19.844  27.638  1.00  0.00              
ATOM    128  CA  HIS   128      32.347  17.746  23.980  1.00  0.00              
ATOM    129  CA  HIS   129      35.756  16.659  24.201  1.00  0.00              
ATOM    130  CA  HIS   130      39.952  16.725  24.334  1.00  0.00              
TER                                                                             
END
