
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  130 (  130),  selected  122 , name T0354TS599_5
# Molecule2: number of CA atoms  122 (  928),  selected  122 , name T0354.pdb
# PARAMETERS: T0354TS599_5.T0354.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    74         1 - 74          4.89    13.54
  LCS_AVERAGE:     46.08

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29         1 - 29          1.93    16.34
  LONGEST_CONTINUOUS_SEGMENT:    29        38 - 66          1.99    14.69
  LCS_AVERAGE:     16.82

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         3 - 26          0.93    16.54
  LONGEST_CONTINUOUS_SEGMENT:    24         4 - 27          0.98    16.35
  LCS_AVERAGE:     10.61

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     M       1     M       1      3   29   74     3    5    5    5   11   25   30   32   48   56   60   63   66   69   71   75   78   83   85   89 
LCS_GDT     E       2     E       2      3   29   74     3    5    5   10   19   25   27   45   52   58   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I       3     I       3     24   29   74     5   14   24   25   28   36   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     Q       4     Q       4     24   29   74    12   18   24   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     E       5     E       5     24   29   74    12   18   24   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I       6     I       6     24   29   74    12   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     S       7     S       7     24   29   74    12   18   24   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     K       8     K       8     24   29   74    12   18   24   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     L       9     L       9     24   29   74    12   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     A      10     A      10     24   29   74    12   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I      11     I      11     24   29   74    12   17   24   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     E      12     E      12     24   29   74    12   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     A      13     A      13     24   29   74    12   18   24   25   30   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     L      14     L      14     24   29   74    12   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     E      15     E      15     24   29   74    12   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     D      16     D      16     24   29   74    12   18   24   25   30   38   46   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I      17     I      17     24   29   74     4   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     K      18     K      18     24   29   74     4   18   24   25   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     G      19     G      19     24   29   74     3   18   24   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     K      20     K      20     24   29   74     3   17   24   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     D      21     D      21     24   29   74     4    7   24   25   31   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I      22     I      22     24   29   74     4   14   24   25   31   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I      23     I      23     24   29   74     4   16   24   25   30   39   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     E      24     E      24     24   29   74     4   18   24   25   29   39   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     L      25     L      25     24   29   74     4   18   24   25   29   37   45   52   57   60   61   65   68   69   71   75   78   83   85   89 
LCS_GDT     D      26     D      26     24   29   74     4   18   24   25   29   38   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     T      27     T      27     24   29   74     4    9   22   25   30   39   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     S      28     S      28      5   29   74     3    4   14   22   31   40   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     K      29     K      29      4   29   74     3    8   18   25   30   39   46   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     L      30     L      30      4   11   74     3    4    5    7   11   17   19   28   41   50   54   59   63   69   71   74   78   83   85   89 
LCS_GDT     T      31     T      31      4    5   74     3    4    6    7   11   17   19   24   32   48   53   57   63   64   68   74   78   80   85   88 
LCS_GDT     S      32     S      32      4    5   74     3    7   17   24   30   39   46   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     L      33     L      33      4    5   74     3    4    4   11   13   16   36   41   50   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     F      34     F      34      8   10   74     4    9   14   23   30   37   44   50   56   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     Q      35     Q      35      8   25   74     4    6    8   12   19   22   36   43   49   54   59   61   63   68   71   74   78   81   85   88 
LCS_GDT     R      36     R      36      8   28   74     4    6    8   16   19   23   27   31   38   53   59   61   63   65   71   74   77   81   85   86 
LCS_GDT     M      37     M      37      8   28   74     4    6    8   15   23   37   45   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I      38     I      38      8   29   74     4    6   17   22   24   25   36   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     V      39     V      39      8   29   74     4    6    8   23   30   39   46   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     A      40     A      40      8   29   74     4    6    9   19   24   25   41   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     T      41     T      41      8   29   74     3    6   17   22   30   39   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     G      42     G      42      7   29   74     3    6    8   11   16   29   42   51   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     D      43     D      43     19   29   74     3   13   19   22   25   35   45   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     S      44     S      44     21   29   74     8   16   23   23   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     N      45     N      45     22   29   74     8   16   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     R      46     R      46     22   29   74     8   16   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     Q      47     Q      47     22   29   74     6   16   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     V      48     V      48     22   29   74     8   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     K      49     K      49     22   29   74     8   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     A      50     A      50     22   29   74     8   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     L      51     L      51     22   29   74    10   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     A      52     A      52     22   29   74    10   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     N      53     N      53     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     S      54     S      54     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     V      55     V      55     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     Q      56     Q      56     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     V      57     V      57     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     K      58     K      58     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     L      59     L      59     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     K      60     K      60     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     E      61     E      61     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     A      62     A      62     22   29   74    12   18   23   26   36   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     G      63     G      63     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     V      64     V      64     22   29   74    12   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     D      65     D      65     22   29   74     9   18   23   26   37   41   48   52   56   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     I      66     I      66     22   29   74     8   18   23   26   37   41   48   52   57   60   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     V      67     V      67      5   28   74     3    5    5    5   13   16   22   29   44   50   60   65   68   69   71   75   79   83   85   89 
LCS_GDT     G      68     G      68      5   28   74     5    9   16   21   26   38   44   46   48   55   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     S      69     S      69      5   28   74     5    6   16   21   26   38   44   46   48   55   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     E      70     E      70      5   28   74     5    8   17   23   26   38   44   46   48   55   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     G      71     G      71      5   28   74     5    5   15   23   26   27   44   46   48   55   61   65   68   69   71   75   79   83   85   89 
LCS_GDT     H      72     H      72      4    8   74     3    3    4    5    8   12   17   23   31   43   52   55   59   64   71   75   79   83   85   89 
LCS_GDT     E      73     E      73      4    8   74     3    3    4    5    8   12   17   19   26   35   46   53   59   64   67   72   79   83   85   89 
LCS_GDT     S      74     S      74      3    8   74     3    3    4    6   12   16   17   21   27   33   46   53   59   64   68   72   79   83   85   89 
LCS_GDT     G      75     G      75      3    5   41     3    3    3    6   11   13   17   19   21   24   27   33   41   51   62   72   79   82   85   89 
LCS_GDT     E      76     E      76      8   16   41     7    8    8   12   15   16   19   23   33   41   52   55   59   64   71   75   79   83   85   89 
LCS_GDT     W      77     W      77      8   16   41     7    8    9   12   15   16   17   23   31   43   52   55   59   64   71   75   79   83   85   89 
LCS_GDT     V      78     V      78      8   16   41     7    8    9   12   15   16   17   23   28   36   48   55   59   64   67   72   79   83   85   89 
LCS_GDT     L      79     L      79      8   16   41     7    8    9   12   15   16   17   23   28   40   50   55   59   64   67   72   79   83   85   89 
LCS_GDT     V      80     V      80      8   16   41     7    8    9   12   15   16   17   21   22   24   26   36   54   64   67   72   75   79   82   85 
LCS_GDT     D      81     D      81      8   16   41     7    8    8   12   15   16   17   21   22   24   26   42   59   64   67   72   75   79   82   85 
LCS_GDT     A      82     A      82      8   16   34     7    8    9   12   15   16   17   21   22   24   26   30   39   43   57   72   75   79   82   85 
LCS_GDT     G      83     G      83      8   16   34     4    8    9   12   15   16   17   21   22   24   26   30   39   47   67   72   75   79   82   85 
LCS_GDT     D      84     D      84      8   16   34     4    7    8   12   15   16   17   21   22   24   28   38   54   64   67   72   75   79   82   85 
LCS_GDT     V      85     V      85      8   16   34     4    7    8   10   11   15   17   21   22   24   31   43   56   64   67   72   75   79   83   88 
LCS_GDT     V      86     V      86      8   16   34     4    7    9   12   15   16   17   21   22   24   28   37   54   64   67   72   75   79   82   88 
LCS_GDT     V      87     V      87      8   16   34     4    7    8   11   15   16   17   21   22   24   26   33   40   51   65   72   75   79   84   89 
LCS_GDT     H      88     H      88      8   16   34     4    7    9   12   15   16   17   21   22   27   34   51   59   64   67   72   79   83   85   89 
LCS_GDT     V      89     V      89      8   16   34     4    7    8   12   15   16   17   21   22   24   26   30   37   49   57   71   75   80   84   89 
LCS_GDT     M      90     M      90      8   16   34     3    7    9   12   15   16   17   21   22   29   39   52   59   64   71   75   79   83   85   89 
LCS_GDT     L      91     L      91      9   16   34     8    9    9   12   15   16   17   21   22   24   33   41   52   63   68   72   79   83   85   89 
LCS_GDT     P      92     P      92      9   13   34     8    9    9   10   13   15   17   26   34   50   54   60   67   69   71   75   79   83   85   89 
LCS_GDT     A      93     A      93      9   13   34     8    9    9   10   12   15   23   32   42   50   54   62   68   69   71   75   79   83   85   89 
LCS_GDT     V      94     V      94      9   13   34     8    9    9   10   12   13   17   21   22   24   28   37   52   64   67   72   79   83   85   89 
LCS_GDT     R      95     R      95      9   13   34     8    9    9   10   12   13   14   16   22   24   26   33   40   52   65   72   75   79   84   89 
LCS_GDT     D      96     D      96      9   13   34     8    9    9   10   12   13   14   16   21   24   28   37   51   63   67   72   75   79   84   88 
LCS_GDT     Y      97     Y      97      9   13   34     8    9    9   10   12   13   14   15   18   23   26   30   42   55   67   72   75   79   83   88 
LCS_GDT     Y      98     Y      98      9   13   34     8    9    9   10   12   13   14   15   17   20   26   29   35   38   42   49   56   76   82   85 
LCS_GDT     D      99     D      99      9   13   34     6    9    9   10   12   13   14   15   17   20   26   29   35   38   42   48   53   65   81   85 
LCS_GDT     I     100     I     100      7   13   34     4    7    7    7    9   11   13   15   16   20   21   29   32   37   42   45   48   57   61   82 
LCS_GDT     E     101     E     101      7   13   34     5    7    9   10   12   13   14   15   17   20   26   29   35   38   42   49   53   61   80   85 
LCS_GDT     A     102     A     102      7    8   34     5    7    7    7    7   10   13   15   18   21   26   30   35   38   48   52   67   79   82   85 
LCS_GDT     L     103     L     103      7    8   34     5    7    7    7    7    8    9   11   13   14   26   30   35   38   44   49   60   79   82   85 
LCS_GDT     W     104     W     104      7    8   34     5    7    7    7    7    8    8    9   10   13   26   30   35   38   48   52   74   79   82   85 
LCS_GDT     G     105     G     105      7    8   34     5    7    7    7    7    8    9   11   21   21   25   30   39   42   48   52   74   79   82   85 
LCS_GDT     G     106     G     106      5    8   23     3    5    5    7    7    9   11   11   13   14   16   23   26   30   35   39   45   51   67   80 
LCS_GDT     Q     107     Q     107      5    8   19     3    5    6    7    7    9   11   11   16   16   16   40   49   52   66   73   74   76   83   89 
LCS_GDT     K     108     K     108      5    8   19     3    5    6    7    7    9   11   16   20   21   33   46   56   60   71   75   79   83   85   89 
LCS_GDT     P     109     P     109      5    8   19     3    5    6    7    7    9   11   13   21   25   37   61   68   69   71   75   79   83   85   89 
LCS_GDT     S     110     S     110      5    8   16     3    5    5    6    7    9   11   11   13   14   16   24   28   64   71   74   78   81   85   89 
LCS_GDT     F     111     F     111      4    8   16     3    5    6    7    7    9   13   15   17   25   33   40   51   56   62   66   77   81   85   88 
LCS_GDT     A     112     A     112      4    8   16     3    5    6    7    7    9   11   11   13   14   16   17   19   21   23   24   56   66   70   73 
LCS_GDT     V     113     V     113      4    8   16     3    5    6    7    7    9   11   11   13   14   16   17   18   20   23   23   27   48   50   53 
LCS_GDT     G     114     G     114      4    8   16     3    3    5    5    7    9    9   10   13   14   16   17   18   20   23   23   25   26   26   29 
LCS_GDT     A     115     A     115      4    7   16     3    3    5    5    6    9    9   10   11   12   12   14   17   18   22   23   25   26   26   29 
LCS_GDT     A     116     A     116      4    7   15     3    3    5    5    7    9    9   10   11   12   12   14   17   18   21   23   25   26   26   29 
LCS_GDT     K     117     K     117      3    6   15     3    3    5    5    7    9    9   10   11   12   12   12   16   16   18   21   22   23   26   29 
LCS_GDT     P     118     P     118      3    5   15     3    3    5    5    7    9    9   10   11   11   12   12   16   16   16   17   20   22   25   28 
LCS_GDT     W     119     W     119      4    5   15     3    4    5    5    7    9    9   10   11   11   12   12   16   16   16   17   20   22   25   28 
LCS_GDT     S     120     S     120      4    5   15     3    4    4    5    6    9    9   10   11   12   12   12   16   16   16   17   20   22   25   28 
LCS_GDT     A     121     A     121      4    5   15     3    4    4    4    4    5    5    5    7   10   10   12   16   16   16   17   20   22   22   28 
LCS_GDT     V     122     V     122      4    5   13     3    4    4    4    4    5    5    5    5    5    7    7    8    9   10   11   15   17   17   24 
LCS_AVERAGE  LCS_A:  24.50  (  10.61   16.82   46.08 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     18     24     26     37     41     48     52     57     60     61     65     68     69     71     75     79     83     85     89 
GDT PERCENT_CA   9.84  14.75  19.67  21.31  30.33  33.61  39.34  42.62  46.72  49.18  50.00  53.28  55.74  56.56  58.20  61.48  64.75  68.03  69.67  72.95
GDT RMS_LOCAL    0.26   0.62   0.93   1.34   1.85   2.02   2.45   2.62   2.90   3.04   3.09   3.47   3.80   3.90   4.09   4.70   5.37   5.58   5.75   6.13
GDT RMS_ALL_CA  14.64  13.80  16.54  13.76  13.65  13.81  14.41  14.50  14.65  14.54  14.57  14.20  13.89  13.81  13.82  13.39  13.00  13.01  12.98  12.99

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.519
LGA    E       2      E       2          5.038
LGA    I       3      I       3          3.211
LGA    Q       4      Q       4          1.796
LGA    E       5      E       5          2.215
LGA    I       6      I       6          2.384
LGA    S       7      S       7          2.443
LGA    K       8      K       8          2.019
LGA    L       9      L       9          2.744
LGA    A      10      A      10          2.938
LGA    I      11      I      11          2.628
LGA    E      12      E      12          2.540
LGA    A      13      A      13          3.170
LGA    L      14      L      14          3.070
LGA    E      15      E      15          2.930
LGA    D      16      D      16          3.794
LGA    I      17      I      17          2.734
LGA    K      18      K      18          2.192
LGA    G      19      G      19          2.327
LGA    K      20      K      20          1.823
LGA    D      21      D      21          2.270
LGA    I      22      I      22          2.012
LGA    I      23      I      23          2.873
LGA    E      24      E      24          2.976
LGA    L      25      L      25          3.818
LGA    D      26      D      26          3.163
LGA    T      27      T      27          2.932
LGA    S      28      S      28          1.638
LGA    K      29      K      29          4.877
LGA    L      30      L      30          9.793
LGA    T      31      T      31         10.512
LGA    S      32      S      32          4.929
LGA    L      33      L      33          5.840
LGA    F      34      F      34          5.775
LGA    Q      35      Q      35          7.741
LGA    R      36      R      36          7.408
LGA    M      37      M      37          5.257
LGA    I      38      I      38          4.652
LGA    V      39      V      39          3.884
LGA    A      40      A      40          4.504
LGA    T      41      T      41          3.285
LGA    G      42      G      42          5.063
LGA    D      43      D      43          3.986
LGA    S      44      S      44          3.330
LGA    N      45      N      45          3.245
LGA    R      46      R      46          2.312
LGA    Q      47      Q      47          1.519
LGA    V      48      V      48          2.331
LGA    K      49      K      49          1.589
LGA    A      50      A      50          0.798
LGA    L      51      L      51          1.597
LGA    A      52      A      52          1.415
LGA    N      53      N      53          0.987
LGA    S      54      S      54          1.342
LGA    V      55      V      55          1.139
LGA    Q      56      Q      56          1.073
LGA    V      57      V      57          1.907
LGA    K      58      K      58          2.113
LGA    L      59      L      59          1.615
LGA    K      60      K      60          2.406
LGA    E      61      E      61          3.132
LGA    A      62      A      62          3.036
LGA    G      63      G      63          3.440
LGA    V      64      V      64          2.667
LGA    D      65      D      65          3.830
LGA    I      66      I      66          3.653
LGA    V      67      V      67          6.739
LGA    G      68      G      68          7.095
LGA    S      69      S      69          7.047
LGA    E      70      E      70          8.114
LGA    G      71      G      71          8.640
LGA    H      72      H      72         13.961
LGA    E      73      E      73         17.559
LGA    S      74      S      74         17.516
LGA    G      75      G      75         18.510
LGA    E      76      E      76         14.363
LGA    W      77      W      77         14.103
LGA    V      78      V      78         14.919
LGA    L      79      L      79         14.488
LGA    V      80      V      80         16.068
LGA    D      81      D      81         16.130
LGA    A      82      A      82         17.623
LGA    G      83      G      83         18.632
LGA    D      84      D      84         17.031
LGA    V      85      V      85         14.114
LGA    V      86      V      86         15.911
LGA    V      87      V      87         15.176
LGA    H      88      H      88         14.403
LGA    V      89      V      89         16.128
LGA    M      90      M      90         13.609
LGA    L      91      L      91         14.645
LGA    P      92      P      92         10.395
LGA    A      93      A      93         10.243
LGA    V      94      V      94         15.307
LGA    R      95      R      95         16.095
LGA    D      96      D      96         13.986
LGA    Y      97      Y      97         16.048
LGA    Y      98      Y      98         20.405
LGA    D      99      D      99         20.578
LGA    I     100      I     100         22.007
LGA    E     101      E     101         21.049
LGA    A     102      A     102         18.224
LGA    L     103      L     103         18.454
LGA    W     104      W     104         18.225
LGA    G     105      G     105         15.562
LGA    G     106      G     106         14.103
LGA    Q     107      Q     107          7.753
LGA    K     108      K     108         10.216
LGA    P     109      P     109          9.429
LGA    S     110      S     110         12.744
LGA    F     111      F     111         17.180
LGA    A     112      A     112         20.582
LGA    V     113      V     113         26.637
LGA    G     114      G     114         30.532
LGA    A     115      A     115         33.073
LGA    A     116      A     116         39.433
LGA    K     117      K     117         40.091
LGA    P     118      P     118         36.239
LGA    W     119      W     119         40.579
LGA    S     120      S     120         42.453
LGA    A     121      A     121         42.610
LGA    V     122      V     122         40.017

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  130  122    4.0     52    2.62    35.041    32.440     1.912

LGA_LOCAL      RMSD =  2.620  Number of atoms =   52  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.553  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 12.687  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.152622 * X  +  -0.836336 * Y  +  -0.526545 * Z  +  39.906757
  Y_new =   0.016258 * X  +   0.530589 * Y  +  -0.847473 * Z  +  22.253069
  Z_new =   0.988151 * X  +  -0.137903 * Y  +  -0.067382 * Z  +  24.581741 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.025297    1.116295  [ DEG:  -116.0410     63.9590 ]
  Theta =  -1.416702   -1.724891  [ DEG:   -81.1711    -98.8289 ]
  Phi   =   3.035467   -0.106126  [ DEG:   173.9194     -6.0806 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0354TS599_5                                  
REMARK     2: T0354.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0354TS599_5.T0354.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  130  122   4.0   52   2.62  32.440    12.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0354TS599_5
PFRMAT TS                                                                       
TARGET T0354                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      54.498  17.435  19.838  1.00  0.00              
ATOM      2  CA  GLU     2      50.951  19.487  19.626  1.00  0.00              
ATOM      3  CA  ILE     3      50.093  22.967  19.474  1.00  0.00              
ATOM      4  CA  GLN     4      50.415  19.574  21.923  1.00  0.00              
ATOM      5  CA  GLU     5      52.975  21.509  24.054  1.00  0.00              
ATOM      6  CA  ILE     6      50.712  24.502  24.291  1.00  0.00              
ATOM      7  CA  SER     7      47.757  22.466  25.351  1.00  0.00              
ATOM      8  CA  LYS     8      49.741  20.745  28.123  1.00  0.00              
ATOM      9  CA  LEU     9      51.006  24.088  29.400  1.00  0.00              
ATOM     10  CA  ALA    10      47.442  25.541  29.452  1.00  0.00              
ATOM     11  CA  ILE    11      46.064  22.551  31.240  1.00  0.00              
ATOM     12  CA  GLU    12      48.773  22.778  33.841  1.00  0.00              
ATOM     13  CA  ALA    13      48.169  26.507  34.358  1.00  0.00              
ATOM     14  CA  LEU    14      44.446  25.945  34.849  1.00  0.00              
ATOM     15  CA  GLU    15      45.039  23.129  37.302  1.00  0.00              
ATOM     16  CA  ASP    16      47.476  25.172  39.402  1.00  0.00              
ATOM     17  CA  ILE    17      45.113  28.114  39.577  1.00  0.00              
ATOM     18  CA  LYS    18      42.074  26.023  40.396  1.00  0.00              
ATOM     19  CA  GLY    19      40.094  26.548  37.194  1.00  0.00              
ATOM     20  CA  LYS    20      37.927  23.471  37.189  1.00  0.00              
ATOM     21  CA  ASP    21      37.008  22.804  33.670  1.00  0.00              
ATOM     22  CA  ILE    22      39.014  23.455  30.538  1.00  0.00              
ATOM     23  CA  ILE    23      37.860  22.003  27.253  1.00  0.00              
ATOM     24  CA  GLU    24      40.135  21.804  24.297  1.00  0.00              
ATOM     25  CA  LEU    25      38.769  21.942  20.772  1.00  0.00              
ATOM     26  CA  ASP    26      40.619  20.194  17.896  1.00  0.00              
ATOM     27  CA  THR    27      40.369  21.568  14.576  1.00  0.00              
ATOM     28  CA  SER    28      39.949  18.587  12.334  1.00  0.00              
ATOM     29  CA  LYS    29      42.871  18.809   9.973  1.00  0.00              
ATOM     30  CA  LEU    30      45.520  19.284  12.612  1.00  0.00              
ATOM     31  CA  THR    31      47.818  21.895  10.960  1.00  0.00              
ATOM     32  CA  SER    32      44.867  24.304  10.448  1.00  0.00              
ATOM     33  CA  LEU    33      43.963  23.704  14.055  1.00  0.00              
ATOM     34  CA  PHE    34      47.491  24.451  15.381  1.00  0.00              
ATOM     35  CA  GLN    35      47.508  27.950  13.883  1.00  0.00              
ATOM     36  CA  ARG    36      44.193  28.414  15.749  1.00  0.00              
ATOM     37  CA  MET    37      43.750  26.996  19.261  1.00  0.00              
ATOM     38  CA  ILE    38      40.220  26.720  20.638  1.00  0.00              
ATOM     39  CA  VAL    39      39.718  26.776  24.265  1.00  0.00              
ATOM     40  CA  ALA    40      36.419  26.299  25.794  1.00  0.00              
ATOM     41  CA  THR    41      36.149  27.279  29.356  1.00  0.00              
ATOM     42  CA  GLY    42      33.842  25.954  31.882  1.00  0.00              
ATOM     43  CA  ASP    43      34.816  27.460  35.178  1.00  0.00              
ATOM     44  CA  SER    44      33.856  30.879  36.200  1.00  0.00              
ATOM     45  CA  ASN    45      34.323  33.691  33.735  1.00  0.00              
ATOM     46  CA  ARG    46      37.020  35.536  35.662  1.00  0.00              
ATOM     47  CA  GLN    47      39.142  32.371  36.164  1.00  0.00              
ATOM     48  CA  VAL    48      38.888  31.590  32.492  1.00  0.00              
ATOM     49  CA  LYS    49      39.874  35.137  31.506  1.00  0.00              
ATOM     50  CA  ALA    50      43.004  34.965  33.614  1.00  0.00              
ATOM     51  CA  LEU    51      43.904  31.658  32.100  1.00  0.00              
ATOM     52  CA  ALA    52      43.364  33.011  28.532  1.00  0.00              
ATOM     53  CA  ASN    53      45.692  35.877  29.209  1.00  0.00              
ATOM     54  CA  SER    54      48.331  33.452  30.435  1.00  0.00              
ATOM     55  CA  VAL    55      47.921  31.311  27.425  1.00  0.00              
ATOM     56  CA  GLN    56      48.054  33.986  24.933  1.00  0.00              
ATOM     57  CA  VAL    57      51.228  35.384  26.375  1.00  0.00              
ATOM     58  CA  LYS    58      52.935  31.941  26.463  1.00  0.00              
ATOM     59  CA  LEU    59      51.950  31.239  22.893  1.00  0.00              
ATOM     60  CA  LYS    60      53.150  34.573  21.653  1.00  0.00              
ATOM     61  CA  GLU    61      56.481  33.891  23.261  1.00  0.00              
ATOM     62  CA  ALA    62      56.624  30.522  21.416  1.00  0.00              
ATOM     63  CA  GLY    63      55.615  32.117  18.091  1.00  0.00              
ATOM     64  CA  VAL    64      52.182  30.459  17.953  1.00  0.00              
ATOM     65  CA  ASP    65      49.334  32.468  16.690  1.00  0.00              
ATOM     66  CA  ILE    66      45.865  32.183  17.745  1.00  0.00              
ATOM     67  CA  VAL    67      44.098  31.347  20.796  1.00  0.00              
ATOM     68  CA  GLY    68      40.418  31.543  20.553  1.00  0.00              
ATOM     69  CA  SER    69      38.325  31.564  23.665  1.00  0.00              
ATOM     70  CA  GLU    70      34.612  30.842  23.433  1.00  0.00              
ATOM     71  CA  GLY    71      32.314  30.608  26.395  1.00  0.00              
ATOM     72  CA  HIS    72      29.875  28.029  24.933  1.00  0.00              
ATOM     73  CA  GLU    73      27.795  27.030  27.866  1.00  0.00              
ATOM     74  CA  SER    74      24.742  26.057  25.756  1.00  0.00              
ATOM     75  CA  GLY    75      24.236  22.584  27.031  1.00  0.00              
ATOM     76  CA  GLU    76      27.812  21.616  27.616  1.00  0.00              
ATOM     77  CA  TRP    77      30.012  20.094  24.863  1.00  0.00              
ATOM     78  CA  VAL    78      33.781  19.885  25.317  1.00  0.00              
ATOM     79  CA  LEU    79      36.034  18.689  22.410  1.00  0.00              
ATOM     80  CA  VAL    80      39.288  17.187  23.333  1.00  0.00              
ATOM     81  CA  ASP    81      41.713  16.267  20.650  1.00  0.00              
ATOM     82  CA  ALA    82      43.969  13.472  21.405  1.00  0.00              
ATOM     83  CA  GLY    83      44.612  11.639  18.185  1.00  0.00              
ATOM     84  CA  ASP    84      41.218  10.133  17.560  1.00  0.00              
ATOM     85  CA  VAL    85      38.942  12.894  18.889  1.00  0.00              
ATOM     86  CA  VAL    86      37.441  12.678  22.329  1.00  0.00              
ATOM     87  CA  VAL    87      34.157  14.212  22.924  1.00  0.00              
ATOM     88  CA  HIS    88      33.107  15.126  26.399  1.00  0.00              
ATOM     89  CA  VAL    89      29.502  15.750  27.030  1.00  0.00              
ATOM     90  CA  MET    90      28.457  17.739  30.039  1.00  0.00              
ATOM     91  CA  LEU    91      24.788  17.718  31.185  1.00  0.00              
ATOM     92  CA  PRO    92      24.578  18.522  34.919  1.00  0.00              
ATOM     93  CA  ALA    93      21.158  20.135  34.792  1.00  0.00              
ATOM     94  CA  VAL    94      19.656  17.518  32.553  1.00  0.00              
ATOM     95  CA  ARG    95      21.020  14.580  34.476  1.00  0.00              
ATOM     96  CA  ASP    96      19.729  16.138  37.749  1.00  0.00              
ATOM     97  CA  TYR    97      16.307  16.807  36.263  1.00  0.00              
ATOM     98  CA  TYR    98      15.705  13.515  34.410  1.00  0.00              
ATOM     99  CA  ASP    99      17.434  10.822  36.388  1.00  0.00              
ATOM    100  CA  ILE   100      21.217  10.467  35.806  1.00  0.00              
ATOM    101  CA  GLU   101      21.142   7.164  34.028  1.00  0.00              
ATOM    102  CA  ALA   102      18.518   8.475  31.638  1.00  0.00              
ATOM    103  CA  LEU   103      20.500  11.584  30.921  1.00  0.00              
ATOM    104  CA  TRP   104      23.793   9.805  30.199  1.00  0.00              
ATOM    105  CA  GLY   105      22.004   7.518  27.787  1.00  0.00              
ATOM    106  CA  GLY   106      20.251  10.412  25.952  1.00  0.00              
ATOM    107  CA  GLN   107      23.293  12.551  25.438  1.00  0.00              
ATOM    108  CA  LYS   108      25.823   9.902  24.506  1.00  0.00              
ATOM    109  CA  PRO   109      28.764  10.589  26.798  1.00  0.00              
ATOM    110  CA  SER   110      32.016  10.513  24.940  1.00  0.00              
ATOM    111  CA  PHE   111      34.993   9.481  26.951  1.00  0.00              
ATOM    112  CA  ALA   112      37.944  11.822  26.969  1.00  0.00              
ATOM    113  CA  VAL   113      41.048   9.938  26.059  1.00  0.00              
ATOM    114  CA  GLY   114      44.535  11.321  26.179  1.00  0.00              
ATOM    115  CA  ALA   115      45.847   9.992  22.862  1.00  0.00              
ATOM    116  CA  ALA   116      49.496  10.124  23.070  1.00  0.00              
ATOM    117  CA  LYS   117      51.977  12.803  22.467  1.00  0.00              
ATOM    118  CA  PRO   118      51.723  14.288  19.128  1.00  0.00              
ATOM    119  CA  TRP   119      54.449  13.708  16.618  1.00  0.00              
ATOM    120  CA  SER   120      52.267  13.069  13.537  1.00  0.00              
ATOM    121  CA  ALA   121      53.449  15.468  10.913  1.00  0.00              
ATOM    122  CA  VAL   122      50.730  17.974   9.888  1.00  0.00              
ATOM    123  CA  LEU   123      52.172  21.456   9.189  1.00  0.00              
ATOM    124  CA  GLU   124      51.599  21.734   5.498  1.00  0.00              
ATOM    125  CA  HIS   125      49.448  24.838   5.297  1.00  0.00              
ATOM    126  CA  HIS   126      46.411  23.863   3.255  1.00  0.00              
ATOM    127  CA  HIS   127      45.950  27.554   2.479  1.00  0.00              
ATOM    128  CA  HIS   128      47.661  30.308   5.170  1.00  0.00              
ATOM    129  CA  HIS   129      45.817  32.233   7.592  1.00  0.00              
ATOM    130  CA  HIS   130      43.843  33.759  10.187  1.00  0.00              
TER                                                                             
END
