
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  159 (  159),  selected  149 , name T0356TS464_2
# Molecule2: number of CA atoms  469 ( 3688),  selected  149 , name T0356.pdb
# PARAMETERS: T0356TS464_2.T0356.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        17 - 48          5.00    39.48
  LCS_AVERAGE:      3.30

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18         7 - 24          1.75    23.22
  LCS_AVERAGE:      1.92

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17         8 - 24          0.94    23.24
  LCS_AVERAGE:      1.34

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  469
LCS_GDT     N       7     N       7      3   18   18     0    3    3    7   10   14   18   21   24   27   30   30   31   33   35   36   38   39   41   44 
LCS_GDT     D       8     D       8     17   18   18     3   11   15   17   18   19   20   21   24   27   30   30   31   33   35   37   39   40   43   44 
LCS_GDT     L       9     L       9     17   18   18     4   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   44 
LCS_GDT     R      10     R      10     17   18   18     4   11   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     D      11     D      11     17   18   18    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     F      12     F      12     17   18   18    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     L      13     L      13     17   18   18    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     T      14     T      14     17   18   18    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     L      15     L      15     17   18   18    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     L      16     L      16     17   18   18    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     E      17     E      17     17   18   23    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     Q      18     Q      18     17   18   23    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     Q      19     Q      19     17   18   23    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     G      20     G      20     17   18   23    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     E      21     E      21     17   18   23     9   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     L      22     L      22     17   18   23    11   13   15   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     K      23     K      23     17   18   23     5   11   14   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     R      24     R      24     17   18   23     5   11   14   17   18   19   20   21   24   27   30   30   31   33   35   38   39   40   43   45 
LCS_GDT     E      34     E      34      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   23   24   26   28   29   32   35 
LCS_GDT     I      35     I      35      9   17   23     9    9   11   13   15   18   19   19   19   19   22   22   23   23   24   26   28   29   32   37 
LCS_GDT     T      36     T      36      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   23   24   26   28   29   31   35 
LCS_GDT     E      37     E      37      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   23   24   26   28   29   32   35 
LCS_GDT     I      38     I      38      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   23   24   26   28   30   33   35 
LCS_GDT     A      39     A      39      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   23   24   28   31   35   40   41 
LCS_GDT     D      40     D      40      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   23   24   28   31   35   37   41 
LCS_GDT     R      41     R      41      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   24   26   29   31   35   40   41 
LCS_GDT     T      42     T      42      9   17   23     9    9   11   13   16   18   19   19   19   19   22   22   23   25   28   30   34   38   40   44 
LCS_GDT     L      43     L      43      6   17   23     4    6    9   13   16   18   19   19   19   19   22   22   23   24   28   30   34   38   40   44 
LCS_GDT     R      44     R      44      6   17   23     4    6    9   13   16   18   19   19   19   19   22   22   23   23   26   30   34   38   40   44 
LCS_GDT     A      45     A      45      6   17   23     4    6   10   13   16   18   19   19   19   19   22   22   23   25   28   30   34   38   40   44 
LCS_GDT     G      46     G      46      6   17   23     4    6   11   13   16   18   19   19   19   19   22   22   26   29   31   32   38   40   43   44 
LCS_GDT     G      47     G      47      6   17   23     3    6   11   13   16   18   19   19   19   20   23   25   27   30   31   32   38   39   41   44 
LCS_GDT     P      48     P      48      6   17   23     4    5   11   13   16   18   19   21   24   27   30   30   31   33   35   36   38   40   43   45 
LCS_GDT     A      49     A      49      5   17   22     4    5    8   10   13   18   19   20   21   27   30   30   31   33   35   36   38   39   43   45 
LCS_GDT     L      50     L      50      5   17   22     4    6    9   12   16   18   19   19   19   19   22   22   23   25   29   32   34   39   42   45 
LCS_GDT     L      51     L      51      5   16   22     4    5    9   10   13   18   19   19   19   19   22   22   23   25   28   32   34   39   42   45 
LCS_GDT     F      52     F      52      5   16   21     4    6    9   12   16   18   19   19   19   19   22   22   23   24   28   29   31   33   40   45 
LCS_GDT     V      62     V      62      3    5   21     3    3    3    4    5    6    6   10   10   11   12   14   16   19   22   26   31   32   34   34 
LCS_GDT     L      63     L      63      3    5   21     3    3    3    4    6    7    9   10   10   11   13   14   17   23   28   29   32   33   36   42 
LCS_GDT     C      64     C      64      3    5   20     3    3    3    4    6    7    9   10   13   14   19   21   23   25   28   29   32   38   40   44 
LCS_GDT     N      65     N      65      3    5   17     0    3    3    4    6    7    9   10   11   15   16   17   22   25   29   32   34   39   42   45 
LCS_GDT     L      66     L      66      3    5   17     1    3    3    4    6    8    9   10   12   15   16   17   18   23   29   32   34   39   42   45 
LCS_GDT     M      77     M      77      3    4   17     1    3    3    4    6    7    8   10   12   15   16   17   18   21   29   32   33   34   42   45 
LCS_GDT     G      78     G      78      3    4   17     3    3    3    4    6    7    8    9   12   15   16   17   18   21   29   32   36   37   42   45 
LCS_GDT     Q      79     Q      79      3    4   17     3    3    3    4    6    7    7    9   10   18   20   25   28   32   35   38   39   40   43   45 
LCS_GDT     E      80     E      80      3   10   17     3    3    3    4    6    9    9   10   12   15   16   17   19   21   29   32   38   40   43   44 
LCS_GDT     D      81     D      81      9   10   17     4    5    9    9    9    9    9   10   12   13   19   23   28   32   35   36   38   40   43   44 
LCS_GDT     V      82     V      82      9   10   17     4    5    9    9    9    9   18   20   21   22   25   28   30   32   35   38   39   40   43   45 
LCS_GDT     S      83     S      83      9   10   17     4    5   11   17   18   18   18   20   21   22   23   27   30   33   35   38   39   40   43   45 
LCS_GDT     A      84     A      84      9   10   17     4    6    9    9    9   10   14   15   19   22   23   27   30   33   35   38   39   40   43   45 
LCS_GDT     L      85     L      85      9   10   17     5    6    9   10   13   15   18   19   19   22   23   27   30   33   35   38   39   40   43   45 
LCS_GDT     R      86     R      86      9   10   17     5    6    9    9    9   10   12   17   19   22   23   27   30   33   35   38   39   40   43   45 
LCS_GDT     E      87     E      87      9   10   17     5    6    9   11   11   14   15   15   15   17   19   20   24   33   34   38   39   40   43   45 
LCS_GDT     V      88     V      88      9   10   17     5    6    9   11   11   14   15   15   15   17   19   27   30   33   35   38   39   40   43   45 
LCS_GDT     G      89     G      89      9   10   17     5    6    9    9    9    9   15   17   19   22   23   27   30   33   35   38   39   40   43   44 
LCS_GDT     K      90     K      90      3    4   17     3    3    4    4    5    7    7    9   10   13   16   26   30   33   35   38   39   40   43   44 
LCS_GDT     L      91     L      91      3    4   17     0    3    4    4    4    7    7    9   10   12   13   15   30   33   34   38   39   40   43   44 
LCS_GDT     L      92     L      92      3    3   17     0    3    3    3    8    9    9    9   10   12   12   20   20   22   27   27   29   34   37   44 
LCS_GDT     T     122     T     122      3    3   13     0    3    3    3    3    3    4    8    9   12   13   14   16   18   20   27   28   39   40   44 
LCS_GDT     K     123     K     123      3    3   13     3    3    3    3    3    5    7    8   11   13   15   17   21   24   29   32   34   39   42   45 
LCS_GDT     R     124     R     124      3    3   13     3    3    3    3    4    5    7    8    9   12   13   14   16   18   24   28   31   36   42   45 
LCS_GDT     L     125     L     125      4    4   13     3    3    5    5    5    5    7    8    9   12   13   14   16   18   21   23   28   34   42   45 
LCS_GDT     R     126     R     126      4    4   12     3    3    5    5    5    5    6    8    9   11   13   14   16   17   18   22   27   31   35   42 
LCS_GDT     G     127     G     127      4    5   10     3    3    5    5    5    5    6    8    9   12   13   14   16   18   19   22   27   31   35   42 
LCS_GDT     A     128     A     128      4    5   10     4    4    5    5    5    5    7    8    9   12   13   14   16   18   19   22   27   29   35   42 
LCS_GDT     P     129     P     129      4    5   10     4    4    4    4    4    5    7    8    9   12   14   16   20   23   25   28   32   35   36   42 
LCS_GDT     C     130     C     130      4    5   10     4    4    4    4    4    6    7    8   10   12   14   16   20   23   25   28   32   35   36   38 
LCS_GDT     Q     131     Q     131      4    5   10     4    4    5    5    5    5    7    8    9   12   13   14   16   17   18   19   22   29   31   36 
LCS_GDT     A     220     A     220      3    5    7     1    3    4    5    5    5    9   10   10   11   12   13   13   15   17   19   20   20   22   23 
LCS_GDT     L     221     L     221      4    6    7     4    4    5    6    6    6    7    7    7    7    7    7    7    7    9    9   10   10   20   23 
LCS_GDT     G     222     G     222      4    6    7     4    4    5    6    6    6    7    7    7    7    7    7    7    7    9   12   18   20   22   23 
LCS_GDT     A     223     A     223      4    6    7     4    4    5    6    6    7    9   10   10   11   12   14   15   16   20   23   26   28   29   32 
LCS_GDT     D     224     D     224      4    6    7     4    4    5    6    6    7    9   10   10   11   12   13   17   19   20   25   26   29   30   32 
LCS_GDT     P     225     P     225      3    6    7     3    3    5    6    6    6    7    7   10   13   14   17   18   19   20   25   26   29   30   39 
LCS_GDT     A     226     A     226      0    6    7     0    1    3    6    6    7    9   10   12   15   16   17   19   21   24   27   32   36   42   44 
LCS_GDT     I     277     I     277      4    5    5     3    4    4    5    5    5    5    5   10   11   11   13   14   18   22   24   26   27   29   31 
LCS_GDT     E     278     E     278      4    5    5     3    4    4    5    5    5    7    8   10   11   11   13   14   18   22   24   26   27   29   31 
LCS_GDT     Q     279     Q     279      4    5    5     3    4    4    5    5    5    5    6    7   10   10   12   12   18   20   24   26   27   29   31 
LCS_GDT     G     280     G     280      4    5    5     3    4    4    5    5    5    5    5    6    9   11   12   13   18   21   22   26   27   29   31 
LCS_GDT     E     281     E     281      3    5    5     0    3    3    5    5    5    7    8    8   10   11   12   13   18   21   22   26   27   29   31 
LCS_GDT     V     306     V     306      7   10   14     6    6    6    9    9   11   11   11   12   13   14   16   17   20   22   24   27   29   31   35 
LCS_GDT     T     307     T     307      7   10   14     6    6    6    9    9   11   11   11   12   12   14   16   16   17   20   24   27   29   30   32 
LCS_GDT     H     308     H     308      7   10   14     6    6    6    9    9   11   11   11   12   13   14   16   16   17   20   24   27   29   31   34 
LCS_GDT     I     309     I     309      7   10   14     6    6    6    9    9   11   11   11   13   13   15   17   18   21   22   24   27   29   36   41 
LCS_GDT     T     310     T     310      7   10   14     6    6    6    9    9   11   11   11   13   14   18   20   20   22   30   31   35   37   40   41 
LCS_GDT     Q     311     Q     311      7   10   14     6    6    6    7    8   13   16   16   18   20   21   27   30   33   35   38   39   40   43   44 
LCS_GDT     R     312     R     312      7   10   14     5    5    6    9   12   13   16   17   19   22   23   27   30   33   35   38   39   40   43   44 
LCS_GDT     E     313     E     313      5   10   14     5    5    6    9   12   13   16   17   19   22   23   27   30   33   35   38   39   40   43   44 
LCS_GDT     D     314     D     314      6   10   14     5    6   10   13   15   16   18   19   21   27   30   30   31   33   35   38   39   40   43   44 
LCS_GDT     A     315     A     315      6   10   14     5    6    6    9   12   13   18   19   21   22   30   30   31   33   35   38   39   40   43   44 
LCS_GDT     I     316     I     316      6   10   14     3    6    6    7   12   13   18   19   21   22   30   30   31   33   35   38   39   40   43   44 
LCS_GDT     Y     317     Y     317      6   10   14     3    6    6    7   12   13   16   16   19   22   23   27   30   33   35   38   39   40   43   44 
LCS_GDT     H     318     H     318      6   10   14     3    6    6    8   12   13   16   17   19   22   23   27   30   33   35   38   39   40   43   44 
LCS_GDT     S     319     S     319      6   10   14     3    6    6    8   12   13   16   16   18   20   21   27   30   33   35   38   39   40   43   44 
LCS_GDT     T     320     T     320      4   10   14     3    4    5    8   12   13   16   16   18   20   23   27   30   33   35   38   39   40   43   44 
LCS_GDT     Y     321     Y     321      4   10   14     3    4    5    8   12   13   16   16   18   20   21   25   28   28   33   38   39   40   42   44 
LCS_GDT     E     359     E     359      3    4   14     3    3    3    3    5    6    6    8   10   11   11   13   14   17   18   19   22   24   25   27 
LCS_GDT     G     360     G     360      4    4   14     3    3    4    4    4    5    6    8   10   11   12   15   16   19   22   23   24   28   30   32 
LCS_GDT     C     361     C     361      4    4   14     3    3    4    4    5    6    7    8   10   11   12   14   18   19   22   23   26   28   30   32 
LCS_GDT     S     362     S     362      4    5   14     3    4    5    6    8    8    8   10   11   11   13   15   18   19   22   23   26   29   30   32 
LCS_GDT     Y     363     Y     363      4    5   14     3    4    5    6    8    8    8   10   11   11   13   15   19   21   26   28   29   31   36   38 
LCS_GDT     R     364     R     364      4    5   14     3    4    5    6    8    8    8   10   11   11   13   15   19   29   30   32   34   39   40   45 
LCS_GDT     L     365     L     365      4    5   14     3    4    5    6    8    8    8   10   11   11   13   15   18   24   29   32   34   39   42   45 
LCS_GDT     A     366     A     366      3    5   19     1    3    5    6    8    8    8   10   11   13   14   17   20   23   29   32   34   39   42   45 
LCS_GDT     V     367     V     367      3    3   19     1    3    4    4    5    6    7    9   11   13   23   25   27   30   35   36   38   39   42   45 
LCS_GDT     V     368     V     368      3    3   19     1    3    4    5   11   13   17   20   21   27   30   30   31   33   35   36   38   39   42   45 
LCS_GDT     T     369     T     369      3    4   19     0    3    4    4    5    6    7    9   24   27   30   30   31   33   35   36   38   39   41   45 
LCS_GDT     I     370     I     370      3    4   19     3    3    4    4    5    6    8    9   10   13   15   17   28   33   33   35   38   39   40   41 
LCS_GDT     K     371     K     371      3    4   19     3    3    4    4    5    5    8    9   10   12   15   16   18   19   19   21   22   29   33   36 
LCS_GDT     K     372     K     372      3    4   19     3    3    4    4    5    6    8    9   10   13   15   17   18   19   22   23   24   29   33   38 
LCS_GDT     Q     373     Q     373      3    4   19     3    3    3    4    4    5    8    9   10   12   15   17   18   19   22   23   24   24   36   38 
LCS_GDT     Y     374     Y     374      4    4   19     3    4    4    4    4    5    7    7   10   12   13   17   18   19   22   23   24   24   25   27 
LCS_GDT     A     375     A     375      4    4   19     3    4    4    5    5    6    8    9   10   13   15   17   18   19   22   23   24   24   25   26 
LCS_GDT     G     376     G     376      4    4   19     3    4    4    4    5    5    6    9   10   12   13   15   18   19   22   22   24   24   25   34 
LCS_GDT     H     377     H     377      4    4   19     3    4    4    5    5    6    8    9   10   13   15   17   19   20   22   26   29   31   36   38 
LCS_GDT     A     378     A     378      4    4   19     3    3    4    5    6    6    8    9   10   12   15   17   19   21   26   28   29   31   36   38 
LCS_GDT     K     379     K     379      4    4   19     3    3    4    5    6    6    8    9   10   13   15   17   18   19   22   23   24   27   31   35 
LCS_GDT     R     380     R     380      4    4   19     3    3    4    6    8    8    8    9   10   13   15   17   18   19   22   23   24   26   29   30 
LCS_GDT     V     381     V     381      4    4   19     0    3    4    6    8    8    8    9   10   13   15   17   18   31   32   35   38   39   40   41 
LCS_GDT     M     382     M     382      3    5   19     1    3    4    5    8    9   20   21   24   27   30   30   31   33   35   36   38   39   41   43 
LCS_GDT     M     383     M     383      3    5   19     0    3    9   12   17   19   20   21   24   27   30   30   31   33   35   36   38   39   41   43 
LCS_GDT     G     384     G     384      3    5   19     0    3    4    4    5    5    6    9   11   13   15   17   31   33   35   36   38   39   41   43 
LCS_GDT     K     396     K     396      5    7   11     4    5   10   14   18   19   20   21   24   27   30   30   31   33   35   36   38   39   41   43 
LCS_GDT     F     397     F     397      5    7   11     4    5    7    7    7    9    9   21   24   27   30   30   31   33   35   36   38   39   41   43 
LCS_GDT     V     398     V     398      5    7   11     4    5    7    7    8    9    9    9   10   27   30   30   31   33   35   36   38   39   41   43 
LCS_GDT     I     399     I     399      5    7   11     4    5    7    7    8    9    9    9   10   12   13   14   20   23   29   32   33   39   40   42 
LCS_GDT     V     400     V     400      5    7   11     3    5    7    7    8    9    9   10   11   13   14   16   20   33   33   35   38   39   40   42 
LCS_GDT     C     401     C     401      5    7   11     3    4    7    7    8    9    9    9   10   12   13   15   17   20   22   24   27   31   40   41 
LCS_GDT     D     402     D     402      5    7   11     3    4    7    7    8    9    9    9   10   12   13   15   17   20   22   24   27   29   31   35 
LCS_GDT     I     435     I     435      3    4    7     3    3    3    3    4    4    5    7   10   10   12   14   16   17   19   20   21   23   24   25 
LCS_GDT     D     436     D     436      3    4    6     3    3    3    3    4    4    5    8    8   10   12   15   19   21   23   30   33   36   40   44 
LCS_GDT     Y     437     Y     437      3    4    6     3    3    3    3    4    4    5    8    8   10   12   14   16   22   23   30   33   38   40   44 
LCS_GDT     L     438     L     438      3    4    6     1    3    3    4    4    4    5   10   11   11   12   14   19   22   25   30   34   38   40   44 
LCS_GDT     D     439     D     439      3    3    6     1    3    3    4    4    7    7   10   11   11   12   14   16   18   23   29   34   38   40   44 
LCS_GDT     S     445     S     445      3    4    6     3    3    3    4    4    4    5   13   14   14   16   16   19   22   25   30   34   38   40   44 
LCS_GDT     G     446     G     446      3    4    6     3    3    3    4    4    5    6    8   10   12   16   17   21   24   29   32   34   39   42   45 
LCS_GDT     L     447     L     447      3    4    6     3    3    3    4    4    5    6    8   10   12   14   24   26   29   30   32   34   39   42   45 
LCS_GDT     G     448     G     448      3    4   12     0    3    3    4    4    4    5    8   10   12   14   16   26   29   30   32   34   39   42   45 
LCS_GDT     S     449     S     449      3    3   12     0    3    3    4    4    6    7    9   11   13   14   24   26   29   30   32   34   39   42   45 
LCS_GDT     K     450     K     450      3    3   12     1    3    3    3    4    6    6    9   11   13   14   16   21   27   29   32   34   39   42   45 
LCS_GDT     H     480     H     480      6    9   12     5    6    8    9    9   10   11   11   11   12   12   13   19   20   20   22   27   30   33   35 
LCS_GDT     I     481     I     481      6    9   12     5    6    8    9    9   10   11   11   11   12   12   15   19   20   26   28   29   31   36   38 
LCS_GDT     D     482     D     482      6    9   12     5    6    8    9    9   10   11   11   11   12   13   15   19   21   26   28   29   31   36   38 
LCS_GDT     A     483     A     483      6    9   12     5    6    8    9    9   10   11   11   11   12   13   15   18   21   26   28   29   31   36   38 
LCS_GDT     I     484     I     484      6    9   12     5    6    8    9    9   10   11   11   11   12   13   15   18   21   26   28   29   31   36   38 
LCS_GDT     W     485     W     485      6    9   12     4    6    8    9    9   10   11   11   11   12   12   13   18   21   26   28   29   31   36   38 
LCS_GDT     D     486     D     486      6    9   12     3    5    8    9    9   10   11   11   11   12   12   13   13   14   15   18   23   27   32   38 
LCS_GDT     E     487     E     487      6    9   12     3    5    8    9    9   10   11   11   11   12   12   13   13   13   15   16   20   22   26   31 
LCS_GDT     L     488     L     488      6    9   12     3    5    8    9    9   10   11   11   11   12   12   13   15   17   17   19   24   27   36   38 
LCS_AVERAGE  LCS_A:   2.19  (   1.34    1.92    3.30 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     17     18     19     20     21     24     27     30     30     31     33     35     38     39     40     43     45 
GDT PERCENT_CA   2.35   2.77   3.20   3.62   3.84   4.05   4.26   4.48   5.12   5.76   6.40   6.40   6.61   7.04   7.46   8.10   8.32   8.53   9.17   9.59
GDT RMS_LOCAL    0.27   0.42   0.63   0.94   1.10   1.60   1.95   2.12   2.57   3.08   3.39   3.39   6.74   6.72   4.85   5.11   5.21   5.37   5.95   7.20
GDT RMS_ALL_CA  23.00  23.12  23.08  23.24  23.18  23.59  23.86  23.85  24.08  24.08  24.19  24.19  23.87  24.08  29.17  29.85  29.58  29.49  28.75  20.81

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7          5.861
LGA    D       8      D       8          2.416
LGA    L       9      L       9          2.634
LGA    R      10      R      10          2.481
LGA    D      11      D      11          1.053
LGA    F      12      F      12          0.968
LGA    L      13      L      13          0.985
LGA    T      14      T      14          0.907
LGA    L      15      L      15          0.411
LGA    L      16      L      16          0.890
LGA    E      17      E      17          0.681
LGA    Q      18      Q      18          1.880
LGA    Q      19      Q      19          2.408
LGA    G      20      G      20          2.529
LGA    E      21      E      21          2.384
LGA    L      22      L      22          0.819
LGA    K      23      K      23          1.938
LGA    R      24      R      24          2.534
LGA    E      34      E      34         35.089
LGA    I      35      I      35         28.249
LGA    T      36      T      36         30.700
LGA    E      37      E      37         33.886
LGA    I      38      I      38         27.892
LGA    A      39      A      39         23.782
LGA    D      40      D      40         28.815
LGA    R      41      R      41         27.582
LGA    T      42      T      42         20.432
LGA    L      43      L      43         17.201
LGA    R      44      R      44         22.168
LGA    A      45      A      45         17.808
LGA    G      46      G      46         11.111
LGA    G      47      G      47          9.354
LGA    P      48      P      48          4.497
LGA    A      49      A      49          5.550
LGA    L      50      L      50         11.695
LGA    L      51      L      51         16.051
LGA    F      52      F      52         21.095
LGA    V      62      V      62         24.828
LGA    L      63      L      63         19.253
LGA    C      64      C      64         19.775
LGA    N      65      N      65         17.057
LGA    L      66      L      66         16.445
LGA    M      77      M      77         16.239
LGA    G      78      G      78         14.561
LGA    Q      79      Q      79         10.350
LGA    E      80      E      80         12.984
LGA    D      81      D      81          9.726
LGA    V      82      V      82          7.628
LGA    S      83      S      83          9.509
LGA    A      84      A      84         12.404
LGA    L      85      L      85         12.351
LGA    R      86      R      86         15.064
LGA    E      87      E      87         20.002
LGA    V      88      V      88         20.702
LGA    G      89      G      89         20.439
LGA    K      90      K      90         18.787
LGA    L      91      L      91         18.198
LGA    L      92      L      92         15.987
LGA    T     122      T     122         22.717
LGA    K     123      K     123         24.504
LGA    R     124      R     124         26.713
LGA    L     125      L     125         27.412
LGA    R     126      R     126         34.059
LGA    G     127      G     127         34.952
LGA    A     128      A     128         32.033
LGA    P     129      P     129         32.156
LGA    C     130      C     130         37.236
LGA    Q     131      Q     131         40.555
LGA    A     220      A     220         40.920
LGA    L     221      L     221         39.185
LGA    G     222      G     222         35.222
LGA    A     223      A     223         30.807
LGA    D     224      D     224         26.512
LGA    P     225      P     225         19.796
LGA    A     226      A     226         18.395
LGA    I     277      I     277         44.746
LGA    E     278      E     278         49.747
LGA    Q     279      Q     279         51.698
LGA    G     280      G     280         55.571
LGA    E     281      E     281         57.759
LGA    V     306      V     306         36.285
LGA    T     307      T     307         38.892
LGA    H     308      H     308         33.247
LGA    I     309      I     309         26.875
LGA    T     310      T     310         23.116
LGA    Q     311      Q     311         18.403
LGA    R     312      R     312         15.009
LGA    E     313      E     313         13.259
LGA    D     314      D     314          8.017
LGA    A     315      A     315          8.763
LGA    I     316      I     316          8.941
LGA    Y     317      Y     317         10.740
LGA    H     318      H     318         13.307
LGA    S     319      S     319         15.680
LGA    T     320      T     320         18.460
LGA    Y     321      Y     321         22.576
LGA    E     359      E     359         33.452
LGA    G     360      G     360         32.553
LGA    C     361      C     361         32.098
LGA    S     362      S     362         29.776
LGA    Y     363      Y     363         26.059
LGA    R     364      R     364         23.608
LGA    L     365      L     365         19.835
LGA    A     366      A     366         13.993
LGA    V     367      V     367          9.851
LGA    V     368      V     368          5.454
LGA    T     369      T     369          4.204
LGA    I     370      I     370          6.084
LGA    K     371      K     371         10.200
LGA    K     372      K     372         11.587
LGA    Q     373      Q     373         16.744
LGA    Y     374      Y     374         20.073
LGA    A     375      A     375         21.266
LGA    G     376      G     376         19.034
LGA    H     377      H     377         19.070
LGA    A     378      A     378         12.850
LGA    K     379      K     379         14.872
LGA    R     380      R     380         13.337
LGA    V     381      V     381          7.202
LGA    M     382      M     382          3.751
LGA    M     383      M     383          1.355
LGA    G     384      G     384          6.591
LGA    K     396      K     396          2.594
LGA    F     397      F     397          3.859
LGA    V     398      V     398          4.960
LGA    I     399      I     399          9.381
LGA    V     400      V     400          7.504
LGA    C     401      C     401         11.040
LGA    D     402      D     402         12.238
LGA    I     435      I     435         22.477
LGA    D     436      D     436         23.091
LGA    Y     437      Y     437         30.306
LGA    L     438      L     438         32.964
LGA    D     439      D     439         35.374
LGA    S     445      S     445         34.188
LGA    G     446      G     446         30.193
LGA    L     447      L     447         27.576
LGA    G     448      G     448         28.946
LGA    S     449      S     449         28.622
LGA    K     450      K     450         24.198
LGA    H     480      H     480         38.951
LGA    I     481      I     481         38.537
LGA    D     482      D     482         32.493
LGA    A     483      A     483         35.113
LGA    I     484      I     484         40.359
LGA    W     485      W     485         36.288
LGA    D     486      D     486         32.868
LGA    E     487      E     487         39.829
LGA    L     488      L     488         41.572

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  159  469    4.0     21    2.12     4.744     4.066     0.948

LGA_LOCAL      RMSD =  2.116  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.853  Number of atoms =  149 
Std_ALL_ATOMS  RMSD = 18.950  (standard rmsd on all 149 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.562959 * X  +  -0.284661 * Y  +   0.775916 * Z  +  66.918617
  Y_new =   0.711320 * X  +   0.644908 * Y  +  -0.279495 * Z  +  44.984486
  Z_new =  -0.420833 * X  +   0.709269 * Y  +   0.565542 * Z  +  50.556469 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.897668   -2.243925  [ DEG:    51.4326   -128.5674 ]
  Theta =   0.434363    2.707229  [ DEG:    24.8872    155.1128 ]
  Phi   =   0.901304   -2.240289  [ DEG:    51.6409   -128.3591 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS464_2                                  
REMARK     2: T0356.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS464_2.T0356.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  159  469   4.0   21   2.12   4.066    18.95
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS464_2
PFRMAT TS
TARGET T0356
MODEL 2
PARENT N/A
ATOM      1  CA  MET     4      79.352  75.541  84.081  1.00  0.00
ATOM      2  CA  LYS     5      75.857  73.980  83.538  1.00  0.00
ATOM      3  CA  TYR     6      74.738  75.171  86.883  1.00  0.00
ATOM      4  CA  ASN     7      75.690  78.767  85.960  1.00  0.00
ATOM      5  CA  ASP     8      73.487  78.625  82.874  1.00  0.00
ATOM      6  CA  LEU     9      70.419  76.932  84.282  1.00  0.00
ATOM      7  CA  ARG    10      70.804  79.034  87.367  1.00  0.00
ATOM      8  CA  ASP    11      72.220  81.912  85.249  1.00  0.00
ATOM      9  CA  PHE    12      68.941  81.220  83.476  1.00  0.00
ATOM     10  CA  LEU    13      67.346  80.220  86.776  1.00  0.00
ATOM     11  CA  THR    14      68.818  83.357  88.326  1.00  0.00
ATOM     12  CA  LEU    15      67.155  85.304  85.515  1.00  0.00
ATOM     13  CA  LEU    16      63.750  83.659  86.008  1.00  0.00
ATOM     14  CA  GLU    17      64.012  83.988  89.795  1.00  0.00
ATOM     15  CA  GLN    18      64.716  87.675  89.300  1.00  0.00
ATOM     16  CA  GLN    19      61.446  87.900  87.381  1.00  0.00
ATOM     17  CA  GLY    20      59.524  86.094  90.106  1.00  0.00
ATOM     18  CA  GLU    21      58.695  83.166  87.825  1.00  0.00
ATOM     19  CA  LEU    22      60.779  80.600  89.656  1.00  0.00
ATOM     20  CA  LYS    23      61.593  80.026  93.305  1.00  0.00
ATOM     21  CA  ARG    24      64.159  77.838  95.027  1.00  0.00
ATOM     22  CA  GLU    34      73.130  87.017  76.023  1.00  0.00
ATOM     23  CA  ILE    35      71.613  86.396  79.481  1.00  0.00
ATOM     24  CA  THR    36      70.238  89.904  79.952  1.00  0.00
ATOM     25  CA  GLU    37      68.930  90.338  76.396  1.00  0.00
ATOM     26  CA  ILE    38      67.105  87.032  77.057  1.00  0.00
ATOM     27  CA  ALA    39      65.573  88.276  80.310  1.00  0.00
ATOM     28  CA  ASP    40      64.551  91.540  78.638  1.00  0.00
ATOM     29  CA  ARG    41      62.724  89.593  75.940  1.00  0.00
ATOM     30  CA  THR    42      60.789  87.617  78.566  1.00  0.00
ATOM     31  CA  LEU    43      61.596  85.907  82.017  1.00  0.00
ATOM     32  CA  ARG    44      60.144  89.430  81.942  1.00  0.00
ATOM     33  CA  ALA    45      57.295  88.246  79.724  1.00  0.00
ATOM     34  CA  GLY    46      56.381  85.605  82.302  1.00  0.00
ATOM     35  CA  GLY    47      57.996  82.313  81.197  1.00  0.00
ATOM     36  CA  PRO    48      59.107  80.137  84.126  1.00  0.00
ATOM     37  CA  ALA    49      59.985  76.805  82.463  1.00  0.00
ATOM     38  CA  LEU    50      63.030  77.172  80.214  1.00  0.00
ATOM     39  CA  LEU    51      63.996  74.639  77.566  1.00  0.00
ATOM     40  CA  PHE    52      67.506  75.247  76.233  1.00  0.00
ATOM     41  CA  VAL    62      55.934  79.873  74.703  1.00  0.00
ATOM     42  CA  LEU    63      59.738  79.749  75.021  1.00  0.00
ATOM     43  CA  CYS    64      62.098  81.652  72.754  1.00  0.00
ATOM     44  CA  ASN    65      64.958  79.282  71.931  1.00  0.00
ATOM     45  CA  LEU    66      68.313  80.738  70.876  1.00  0.00
ATOM     46  CA  MET    77      60.534  86.247  62.046  1.00  0.00
ATOM     47  CA  GLY    78      60.310  89.197  64.478  1.00  0.00
ATOM     48  CA  GLN    79      59.208  90.004  68.030  1.00  0.00
ATOM     49  CA  GLU    80      55.793  90.965  66.690  1.00  0.00
ATOM     50  CA  ASP    81      55.380  87.476  65.282  1.00  0.00
ATOM     51  CA  VAL    82      55.945  86.021  68.727  1.00  0.00
ATOM     52  CA  SER    83      53.367  88.409  70.205  1.00  0.00
ATOM     53  CA  ALA    84      50.887  87.213  67.625  1.00  0.00
ATOM     54  CA  LEU    85      51.745  83.590  68.399  1.00  0.00
ATOM     55  CA  ARG    86      50.795  84.189  72.070  1.00  0.00
ATOM     56  CA  GLU    87      47.274  85.041  70.938  1.00  0.00
ATOM     57  CA  VAL    88      47.231  82.228  68.619  1.00  0.00
ATOM     58  CA  GLY    89      47.847  80.009  71.624  1.00  0.00
ATOM     59  CA  LYS    90      51.018  78.444  70.284  1.00  0.00
ATOM     60  CA  LEU    91      54.709  78.185  71.094  1.00  0.00
ATOM     61  CA  LEU    92      58.047  79.542  69.977  1.00  0.00
ATOM     62  CA  LYS   115      64.679 102.685  81.020  1.00  0.00
ATOM     63  CA  GLN   116      68.219 101.906  82.067  1.00  0.00
ATOM     64  CA  VAL   117      68.149  99.000  79.594  1.00  0.00
ATOM     65  CA  LEU   118      67.430 101.582  76.871  1.00  0.00
ATOM     66  CA  ASN   119      70.932 102.869  77.680  1.00  0.00
ATOM     67  CA  MET   120      72.616  99.461  77.804  1.00  0.00
ATOM     68  CA  PRO   121      75.966  99.177  75.997  1.00  0.00
ATOM     69  CA  THR   122      74.955  96.079  74.016  1.00  0.00
ATOM     70  CA  LYS   123      73.092  96.933  70.805  1.00  0.00
ATOM     71  CA  ARG   124      71.122  93.683  71.127  1.00  0.00
ATOM     72  CA  LEU   125      69.790  94.582  74.582  1.00  0.00
ATOM     73  CA  ARG   126      68.679  98.074  73.524  1.00  0.00
ATOM     74  CA  GLY   127      67.079  96.588  70.400  1.00  0.00
ATOM     75  CA  ALA   128      64.964  94.265  72.567  1.00  0.00
ATOM     76  CA  PRO   129      64.403  96.984  75.178  1.00  0.00
ATOM     77  CA  CYS   130      62.999  99.313  72.509  1.00  0.00
ATOM     78  CA  GLN   131      60.671  96.494  71.414  1.00  0.00
ATOM     79  CA  ALA   220      47.084  79.184  60.509  1.00  0.00
ATOM     80  CA  LEU   221      48.400  76.048  58.769  1.00  0.00
ATOM     81  CA  GLY   222      48.119  74.167  62.048  1.00  0.00
ATOM     82  CA  ALA   223      51.637  74.073  63.445  1.00  0.00
ATOM     83  CA  ASP   224      51.857  73.727  67.228  1.00  0.00
ATOM     84  CA  PRO   225      55.189  75.519  67.464  1.00  0.00
ATOM     85  CA  ALA   226      57.735  77.306  65.329  1.00  0.00
ATOM     86  CA  ILE   277      55.552  74.128  56.052  1.00  0.00
ATOM     87  CA  GLU   278      57.010  77.270  54.597  1.00  0.00
ATOM     88  CA  GLN   279      55.046  80.345  55.738  1.00  0.00
ATOM     89  CA  GLY   280      55.034  82.071  52.379  1.00  0.00
ATOM     90  CA  GLU   281      54.144  81.295  48.747  1.00  0.00
ATOM     91  CA  VAL   306      52.664  76.647  94.008  1.00  0.00
ATOM     92  CA  THR   307      51.881  75.552  90.457  1.00  0.00
ATOM     93  CA  HIS   308      54.889  73.263  90.185  1.00  0.00
ATOM     94  CA  ILE   309      57.635  72.001  92.562  1.00  0.00
ATOM     95  CA  THR   310      60.978  70.521  91.403  1.00  0.00
ATOM     96  CA  GLN   311      63.166  68.689  93.916  1.00  0.00
ATOM     97  CA  ARG   312      66.637  69.219  92.442  1.00  0.00
ATOM     98  CA  GLU   313      69.837  68.080  94.244  1.00  0.00
ATOM     99  CA  ASP   314      70.600  70.608  97.006  1.00  0.00
ATOM    100  CA  ALA   315      67.781  73.029  96.142  1.00  0.00
ATOM    101  CA  ILE   316      64.041  72.893  95.697  1.00  0.00
ATOM    102  CA  TYR   317      62.764  75.176  92.930  1.00  0.00
ATOM    103  CA  HIS   318      59.104  76.261  92.902  1.00  0.00
ATOM    104  CA  SER   319      57.012  78.137  90.298  1.00  0.00
ATOM    105  CA  THR   320      54.804  80.393  92.404  1.00  0.00
ATOM    106  CA  TYR   321      51.908  82.314  90.974  1.00  0.00
ATOM    107  CA  GLU   359      51.140  65.622  41.945  1.00  0.00
ATOM    108  CA  GLY   360      50.559  69.282  41.114  1.00  0.00
ATOM    109  CA  CYS   361      49.017  70.368  44.397  1.00  0.00
ATOM    110  CA  SER   362      49.255  73.968  45.637  1.00  0.00
ATOM    111  CA  TYR   363      52.436  74.579  47.646  1.00  0.00
ATOM    112  CA  ARG   364      51.821  73.402  51.192  1.00  0.00
ATOM    113  CA  LEU   365      49.011  70.927  50.547  1.00  0.00
ATOM    114  CA  ALA   366      50.789  67.687  51.440  1.00  0.00
ATOM    115  CA  VAL   367      52.179  69.395  54.539  1.00  0.00
ATOM    116  CA  VAL   368      48.687  70.423  55.658  1.00  0.00
ATOM    117  CA  THR   369      47.481  66.806  55.355  1.00  0.00
ATOM    118  CA  ILE   370      50.384  65.688  57.558  1.00  0.00
ATOM    119  CA  LYS   371      49.699  68.282  60.444  1.00  0.00
ATOM    120  CA  LYS   372      45.896  67.748  60.701  1.00  0.00
ATOM    121  CA  GLN   373      46.502  63.897  61.017  1.00  0.00
ATOM    122  CA  TYR   374      49.237  64.459  63.712  1.00  0.00
ATOM    123  CA  ALA   375      46.866  66.823  65.690  1.00  0.00
ATOM    124  CA  GLY   376      44.133  64.059  65.475  1.00  0.00
ATOM    125  CA  HIS   377      46.357  61.278  66.939  1.00  0.00
ATOM    126  CA  ALA   378      48.677  59.884  64.248  1.00  0.00
ATOM    127  CA  LYS   379      52.062  59.235  65.910  1.00  0.00
ATOM    128  CA  ARG   380      54.684  58.729  63.153  1.00  0.00
ATOM    129  CA  VAL   381      54.688  59.982  59.507  1.00  0.00
ATOM    130  CA  MET   382      54.920  57.798  56.361  1.00  0.00
ATOM    131  CA  MET   383      55.481  59.479  53.004  1.00  0.00
ATOM    132  CA  GLY   384      54.025  58.316  49.704  1.00  0.00
ATOM    133  CA  LYS   396      50.110  54.638  64.561  1.00  0.00
ATOM    134  CA  PHE   397      51.822  55.346  61.215  1.00  0.00
ATOM    135  CA  VAL   398      49.516  56.178  58.329  1.00  0.00
ATOM    136  CA  ILE   399      51.093  56.289  54.873  1.00  0.00
ATOM    137  CA  VAL   400      49.980  59.392  52.920  1.00  0.00
ATOM    138  CA  CYS   401      50.886  61.891  50.237  1.00  0.00
ATOM    139  CA  ASP   402      49.230  63.390  47.139  1.00  0.00
ATOM    140  CA  ILE   435      58.435  72.462  64.806  1.00  0.00
ATOM    141  CA  ASP   436      55.806  72.148  61.926  1.00  0.00
ATOM    142  CA  TYR   437      56.649  75.406  60.060  1.00  0.00
ATOM    143  CA  LEU   438      59.095  78.112  59.593  1.00  0.00
ATOM    144  CA  ASP   439      58.367  81.855  59.385  1.00  0.00
ATOM    145  CA  SER   445      57.372  70.194  48.611  1.00  0.00
ATOM    146  CA  GLY   446      58.534  67.435  46.282  1.00  0.00
ATOM    147  CA  LEU   447      55.179  65.647  46.635  1.00  0.00
ATOM    148  CA  GLY   448      53.251  68.885  46.060  1.00  0.00
ATOM    149  CA  SER   449      55.122  69.310  42.785  1.00  0.00
ATOM    150  CA  LYS   450      54.928  65.682  41.686  1.00  0.00
ATOM    151  CA  HIS   480      67.214  71.751  79.011  1.00  0.00
ATOM    152  CA  ILE   481      67.440  73.027  82.600  1.00  0.00
ATOM    153  CA  ASP   482      63.667  73.048  83.132  1.00  0.00
ATOM    154  CA  ALA   483      63.388  69.520  81.756  1.00  0.00
ATOM    155  CA  ILE   484      66.137  68.326  84.123  1.00  0.00
ATOM    156  CA  TRP   485      64.525  69.882  87.208  1.00  0.00
ATOM    157  CA  ASP   486      61.099  68.618  86.096  1.00  0.00
ATOM    158  CA  GLU   487      62.431  65.053  85.824  1.00  0.00
ATOM    159  CA  LEU   488      64.245  65.229  89.158  1.00  0.00
TER
END
