
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  157 , name T0356TS677_1-D2
# Molecule2: number of CA atoms  192 ( 1487),  selected  157 , name T0356_D2.pdb
# PARAMETERS: T0356TS677_1-D2.T0356_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       210 - 238         4.72    26.83
  LONGEST_CONTINUOUS_SEGMENT:    23       239 - 264         4.79    23.59
  LCS_AVERAGE:      8.70

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       224 - 238         1.84    30.62
  LCS_AVERAGE:      4.54

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       198 - 210         0.69    33.85
  LCS_AVERAGE:      3.13

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  192
LCS_GDT     T     122     T     122      5    7    8     3    5    5    6    7    7    8    8    8    8    9   11   13   15   17   17   18   23   27   29 
LCS_GDT     K     123     K     123      5    7    8     3    5    5    6    7    7    8    8    8    8   10   11   14   15   17   18   19   23   27   29 
LCS_GDT     R     124     R     124      5    7    8     3    5    5    6    7    7    8    8    8    8   10   11   14   15   17   18   19   21   24   29 
LCS_GDT     L     125     L     125      5    7    8     3    5    5    6    7    7    8    8    8    8   10   11   14   15   17   18   19   23   27   29 
LCS_GDT     R     126     R     126      5    7    8     3    5    5    6    7    7    8    8    8   11   11   12   13   15   17   18   19   21   24   29 
LCS_GDT     G     127     G     127      4    7    8     0    4    4    6    7    7    8    8    8   11   11   12   14   15   17   18   19   23   25   29 
LCS_GDT     A     128     A     128      4    7    8     0    4    4    5    7    7    8    8    8   11   11   12   14   14   17   19   21   24   27   30 
LCS_GDT     P     129     P     129      4    7   10     0    4    4    5    5    7    8    8    8    8    8    8   14   14   16   18   21   24   29   32 
LCS_GDT     N     143     N     143      3    3   10     0    3    3    3    3    8    9   11   11   13   15   20   25   28   31   35   39   43   48   52 
LCS_GDT     R     144     R     144      3    8   12     3    3    5    6    7    8    9   11   12   13   14   18   23   28   31   36   39   43   48   52 
LCS_GDT     I     145     I     145      3    8   15     3    3    4    4    7    8    9   11   12   13   14   17   22   26   31   32   38   42   48   52 
LCS_GDT     P     146     P     146      4    8   15     3    3    6    7    8    8   10   11   13   16   20   26   29   33   35   37   41   43   48   52 
LCS_GDT     I     147     I     147      5    8   15     3    3    6    7    8    8   10   11   14   17   22   26   30   33   35   37   41   43   48   52 
LCS_GDT     M     148     M     148      5    8   15     4    4    6    7    8    8   11   14   17   18   23   27   30   33   35   37   41   43   48   52 
LCS_GDT     T     149     T     149      5    8   15     4    4    6    7    8    9   11   14   17   18   23   27   30   33   35   37   41   43   48   52 
LCS_GDT     C     150     C     150      5    8   15     4    4    6    7    8    9   11   14   17   18   23   27   30   33   35   37   41   43   48   52 
LCS_GDT     W     151     W     151      5    8   15     4    4    6    7    7    8   10   11   12   13   17   20   23   24   27   31   36   42   46   51 
LCS_GDT     P     152     P     152      4    7   15     3    3    4    7    7    8   10   11   12   13   15   16   20   24   26   29   30   32   34   38 
LCS_GDT     P     157     P     157      4    4   15     2    3    4    4    4    4    6    6    6    6   23   24   26   30   32   35   39   42   45   49 
LCS_GDT     L     158     L     158      4    5   15     3    4    4    6    7    8   10   11   12   17   19   20   28   30   33   37   39   43   48   52 
LCS_GDT     I     159     I     159      4    5   15     3    4    4    6    7    8   10   11   12   13   15   18   23   28   32   37   39   41   47   52 
LCS_GDT     T     160     T     160      4    5   15     3    4    4    5    5    7   10   11   11   13   15   15   16   18   22   25   27   30   35   40 
LCS_GDT     W     161     W     161      4    5   15     0    4    4    5    5    7   10   11   11   13   15   15   16   18   19   22   25   32   35   40 
LCS_GDT     G     162     G     162      3    5   15     1    3    3    6    7    8    9   11   12   13   15   15   16   18   19   22   25   27   35   37 
LCS_GDT     L     163     L     163      3    4   15     3    3    3    4    5    5    8    9   11   13   14   15   17   19   23   25   26   27   35   37 
LCS_GDT     T     164     T     164      3    3   14     3    3    3    4    5    7    8   10   11   13   13   15   16   17   19   22   22   27   35   37 
LCS_GDT     V     165     V     165      3    3   14     3    3    3    4    4    7    8   10   11   11   13   15   16   17   19   22   22   24   27   32 
LCS_GDT     T     166     T     166      3    3   14     0    3    3    3    3    4    5    6    8   11   13   14   16   17   19   23   26   27   29   32 
LCS_GDT     R     167     R     167      3    3   17     0    3    3    3    3    5    6    7   13   16   18   19   20   21   23   24   31   34   34   36 
LCS_GDT     P     169     P     169      4    8   17     3    4    6    6    8   12   13   14   16   16   16   16   17   19   20   20   22   24   31   37 
LCS_GDT     H     170     H     170      4    8   17     3    4    6    6    8   12   13   14   16   16   16   16   17   19   20   20   22   25   35   37 
LCS_GDT     K     171     K     171      4    8   17     3    4    6    6   10   12   13   14   16   16   16   16   18   20   23   24   27   30   35   37 
LCS_GDT     E     172     E     172      4    8   17     3    4    6    6   10   12   13   14   16   16   16   16   18   21   23   24   29   31   35   37 
LCS_GDT     R     173     R     173      5    8   17     3    5    6    6   10   12   13   14   16   16   16   17   21   23   26   29   29   32   34   38 
LCS_GDT     Q     174     Q     174      5    8   17     4    5    6    6   10   12   13   14   16   16   17   18   22   24   26   29   29   32   35   40 
LCS_GDT     N     175     N     175      5    8   17     4    5    5    6   10   12   13   14   16   16   17   18   22   24   26   29   29   32   35   40 
LCS_GDT     L     176     L     176      5    8   17     4    5    5    6    9   12   13   14   16   16   17   18   22   24   26   29   33   35   37   41 
LCS_GDT     G     177     G     177      5    8   17     4    5    5    6   10   12   13   14   16   16   17   21   25   28   30   33   36   38   40   42 
LCS_GDT     I     178     I     178      5    8   17     3    4    5    6   10   12   13   14   16   16   20   22   25   28   30   33   36   38   40   43 
LCS_GDT     Y     179     Y     179      5    8   17     3    5    6    7   10   12   13   14   16   16   20   23   25   28   33   37   38   38   40   43 
LCS_GDT     R     180     R     180      5    8   17     3    5    6    7   10   12   13   14   16   16   20   27   30   33   35   37   38   38   40   43 
LCS_GDT     Q     181     Q     181      5    8   17     3    5    6    7   10   12   13   14   18   20   23   27   30   33   35   37   38   38   40   43 
LCS_GDT     Q     182     Q     182      5    5   17     3    4    6    7    7    9   11   12   16   19   23   27   30   33   35   37   38   38   40   43 
LCS_GDT     L     183     L     183      5    5   17     3    4    6    7    9   11   13   14   18   20   23   27   30   33   35   37   38   38   40   43 
LCS_GDT     I     184     I     184      3    3   17     3    3    3    3    4    6    8   12   16   16   16   17   22   33   35   37   38   38   40   43 
LCS_GDT     I     190     I     190      6    7   16     4    6    6    6    6    7    9   10   11   15   16   21   23   25   27   30   33   35   36   41 
LCS_GDT     M     191     M     191      6    7   16     4    6    6    6    6    7    9    9   11   15   16   21   23   28   30   32   33   38   39   41 
LCS_GDT     R     192     R     192      6    7   16     4    6    6    6    6    7    9   10   11   15   16   21   23   28   30   32   34   38   40   42 
LCS_GDT     W     193     W     193      6    7   16     4    6    6    7    7    9    9   11   12   15   18   21   25   28   30   33   36   38   40   42 
LCS_GDT     L     194     L     194      6    7   17     3    6    6    7    7    8    9   11   12   14   20   22   25   28   30   33   36   38   40   42 
LCS_GDT     S     195     S     195      6    7   17     3    6    6    6    6    8    9   11   12   16   17   22   25   28   30   33   36   38   40   43 
LCS_GDT     H     196     H     196      3    7   17     3    3    4    5    7    7   11   14   15   16   20   22   25   28   30   33   36   38   40   42 
LCS_GDT     R     197     R     197      3   14   17     3    3    4    7   11   14   14   14   15   16   20   22   25   28   30   33   36   38   40   43 
LCS_GDT     G     198     G     198     13   14   17     4   13   13   13   14   14   14   14   15   16   18   20   24   28   30   33   35   38   40   42 
LCS_GDT     G     199     G     199     13   14   17     9   13   13   13   14   14   14   14   15   16   16   17   22   23   26   28   30   33   39   41 
LCS_GDT     A     200     A     200     13   14   17     9   13   13   13   14   14   14   14   15   16   16   17   18   21   23   28   30   32   35   39 
LCS_GDT     L     201     L     201     13   14   17     9   13   13   13   14   14   14   14   15   16   17   20   23   24   27   29   30   33   36   40 
LCS_GDT     D     202     D     202     13   14   17     9   13   13   13   14   14   14   14   15   16   16   20   23   24   27   29   30   33   36   40 
LCS_GDT     Y     203     Y     203     13   14   17     9   13   13   13   14   14   14   14   15   16   17   20   23   24   27   29   30   33   35   40 
LCS_GDT     Q     204     Q     204     13   14   17     9   13   13   13   14   14   14   14   15   16   17   20   23   24   27   29   30   33   35   40 
LCS_GDT     E     205     E     205     13   14   17     9   13   13   13   14   14   14   14   15   16   17   20   23   24   27   29   30   33   35   40 
LCS_GDT     W     206     W     206     13   14   17     9   13   13   13   14   14   14   14   15   16   17   20   23   24   27   29   30   32   35   40 
LCS_GDT     C     207     C     207     13   14   17     9   13   13   13   14   14   14   14   15   16   17   20   23   24   27   29   30   32   35   38 
LCS_GDT     A     208     A     208     13   14   17     5   13   13   13   14   14   14   14   15   16   17   19   20   22   27   28   30   33   35   38 
LCS_GDT     A     209     A     209     13   14   21     5   13   13   13   14   14   14   14   15   16   16   19   20   21   27   27   30   31   35   37 
LCS_GDT     H     210     H     210     13   14   23     5   13   13   13   14   14   14   14   15   16   17   19   23   23   27   27   30   31   35   38 
LCS_GDT     V     217     V     217      3    4   23     0    3    3    5    7   11   12   15   18   19   21   21   22   24   26   30   33   34   36   38 
LCS_GDT     S     218     S     218      5    7   23     5    5    5    7    7   11   12   15   18   19   21   21   23   25   27   30   33   34   36   38 
LCS_GDT     V     219     V     219      5    7   23     5    5    5    7    7   11   12   15   18   19   21   21   23   26   30   32   34   38   40   42 
LCS_GDT     A     220     A     220      5    7   23     5    5    5    7    8   11   12   15   18   19   23   27   30   33   35   37   38   38   40   42 
LCS_GDT     L     221     L     221      5    7   23     5    5    5    7    7    9   12   15   18   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     G     222     G     222      5    7   23     5    5    5    7    7    9   13   17   20   21   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     A     223     A     223      4    7   23     3    4    4    5    8   11   13   15   18   21   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     D     224     D     224     10   15   23     4    6   12   14   15   15   17   17   18   19   21   24   28   30   33   37   41   43   48   52 
LCS_GDT     P     225     P     225     10   15   23     4    6   12   14   15   15   17   17   18   19   21   21   28   30   35   37   41   43   48   52 
LCS_GDT     A     226     A     226     10   15   23     4    8   12   14   15   15   17   17   18   19   23   27   30   33   35   37   41   43   48   52 
LCS_GDT     T     227     T     227     10   15   23     7    8   12   14   15   15   17   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     I     228     I     228     10   15   23     7    8   12   14   15   15   17   17   20   21   25   27   29   30   33   37   41   41   47   49 
LCS_GDT     L     229     L     229     10   15   23     7    8   12   14   15   15   17   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     G     230     G     230     10   15   23     7    8   12   14   15   15   17   17   18   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     A     231     A     231     10   15   23     7    8   12   14   15   15   17   17   18   22   24   27   30   33   35   37   38   38   40   43 
LCS_GDT     V     232     V     232     10   15   23     7    8   12   14   15   15   17   17   18   19   24   27   28   29   35   37   38   38   40   42 
LCS_GDT     T     233     T     233     10   15   23     7    8   12   14   15   15   17   17   18   19   24   26   30   33   35   37   38   38   40   43 
LCS_GDT     P     234     P     234      9   15   23     3    5   12   14   15   15   17   17   18   19   21   22   25   28   30   34   37   38   40   43 
LCS_GDT     V     235     V     235      4   15   23     0    3   12   14   15   15   17   17   17   19   21   21   22   26   30   33   36   38   40   43 
LCS_GDT     P     236     P     236      3   15   23     3    3    3    5   10   14   17   17   17   17   20   21   22   25   27   33   35   38   39   43 
LCS_GDT     D     237     D     237      3   15   23     3    6   12   14   15   15   17   17   17   19   21   21   22   23   27   28   32   34   38   40 
LCS_GDT     T     238     T     238      3   15   23     3    3    3    6   12   14   17   17   17   18   21   21   22   23   27   28   32   34   38   40 
LCS_GDT     L     239     L     239      3   12   23     0    3    3    3    8    8   10   12   13   15   20   26   30   33   35   37   41   43   48   52 
LCS_GDT     S     240     S     240     11   12   23     7   11   11   11   11   11   13   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     E     241     E     241     11   12   23     7   11   11   11   11   11   13   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     Y     242     Y     242     11   12   23     7   11   11   11   11   11   11   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     A     243     A     243     11   12   23     7   11   11   11   11   11   11   14   18   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     F     244     F     244     11   12   23     7   11   11   11   11   11   13   16   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     A     245     A     245     11   12   23     7   11   11   11   11   11   13   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     G     246     G     246     11   12   23     7   11   11   11   11   11   12   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     L     247     L     247     11   12   23     6   11   11   11   11   11   11   14   17   19   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     L     248     L     248     11   12   23     7   11   11   11   11   11   11   13   18   22   25   27   30   33   35   37   39   43   48   52 
LCS_GDT     R     249     R     249     11   12   23     7   11   11   11   11   11   13   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     G     250     G     250     11   12   23     5   11   11   11   11   11   11   16   20   21   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     T     251     T     251      4    8   23     3    4    5    6    8   11   13   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     K     252     K     252      4    8   23     3    4    5    6    8   11   13   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     T     253     T     253      4    8   23     3    4    4    6    7    9   11   14   18   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     E     254     E     254      4    8   23     3    4    5    6    8   10   11   16   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     V     255     V     255      4    8   23     3    6   12   14   15   15   17   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     V     256     V     256      4    8   23     3    4   12   13   15   15   17   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     K     257     K     257      4    8   23     3    7   10   13   14   14   14   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     C     258     C     258      4    8   23     3    3    5    6    8   11   13   17   20   22   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     D     262     D     262      4    6   23     3    4    4    5    7    8   13   17   20   21   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     L     263     L     263      4    6   23     3    4    4    5    8    9   11   14   17   20   25   27   30   33   35   37   41   43   48   52 
LCS_GDT     E     264     E     264      4    6   23     3    4    4    5    5    8   10   11   13   14   16   18   21   24   31   36   39   42   48   52 
LCS_GDT     V     265     V     265      4    6   14     3    4    4    6    7    8   10   11   11   13   18   19   21   24   27   31   38   42   46   52 
LCS_GDT     P     266     P     266      4    6   14     3    4    5    6    7    8   10   11   11   13   14   16   18   21   23   25   29   32   35   40 
LCS_GDT     S     268     S     268      4    6   14     3    4    5    6    7    8   10   11   11   13   13   13   17   20   23   25   29   32   35   40 
LCS_GDT     A     269     A     269      4    7   14     3    4    5    6    6    7    9   11   11   13   14   16   18   21   23   25   29   32   35   40 
LCS_GDT     E     270     E     270      6    7   14     4    6    6    6    6    7    9   11   11   13   14   16   18   21   23   25   29   32   35   40 
LCS_GDT     I     271     I     271      6    7   14     4    6    6    6    6    7    9   11   11   13   14   16   18   21   23   25   28   31   38   41 
LCS_GDT     V     272     V     272      6    7   14     4    6    6    6    6    7    9   11   12   12   16   17   20   21   23   25   26   30   37   41 
LCS_GDT     L     273     L     273      6    7   14     4    6    6    6    6    8    9   12   13   15   18   19   20   21   23   25   28   34   38   44 
LCS_GDT     E     274     E     274      6    7   14     4    6    6    6    6    8    9   11   11   13   13   14   15   18   18   24   28   34   38   41 
LCS_GDT     G     275     G     275      6    7   14     4    6    6    6    6    8    9   11   11   13   13   15   15   18   20   25   29   34   38   41 
LCS_GDT     E     278     E     278      3    8   14     3    3    3    6    7    8    9   11   11   12   18   22   24   28   33   35   36   42   45   49 
LCS_GDT     Q     279     Q     279      4    8   12     3    4    4    6    7    8    8    9   11   14   16   24   28   33   35   37   41   43   48   52 
LCS_GDT     G     280     G     280      4    8   11     3    4    4    6    8    9   11   14   17   18   23   27   30   33   35   37   41   43   48   52 
LCS_GDT     E     281     E     281      5    8   11     3    5    5    6    7    9    9   11   14   14   16   20   23   30   33   34   39   43   48   52 
LCS_GDT     T     282     T     282      5    8   11     3    5    5    6    7    8    8    9    9   10   12   15   16   19   25   26   28   32   40   44 
LCS_GDT     A     283     A     283      5    8   11     3    5    5    6    7    8    8    9    9    9   11   11   12   15   18   23   26   28   30   32 
LCS_GDT     P     284     P     284      5    8   11     3    5    5    6    7    8    8    9    9    9   11   11   15   15   17   19   20   23   26   28 
LCS_GDT     E     285     E     285      5    8   11     3    5    5    6    7    8    8    9    9   11   11   13   15   15   17   19   20   23   26   28 
LCS_GDT     G     286     G     286      4    7   11     3    3    5    6    7    7    8    9    9   11   12   13   15   15   17   18   20   23   26   27 
LCS_GDT     P     287     P     287      4    7   11     3    3    4    4    6    7    7    8    9   11   12   13   15   15   17   18   20   23   26   28 
LCS_GDT     Y     288     Y     288      4    7   11     3    3    4    5    6    7    7    8    9   11   12   13   15   15   17   19   20   23   26   28 
LCS_GDT     G     289     G     289      4    7   10     3    3    4    5    6    7    7    8    9   11   11   12   15   15   17   19   20   22   24   27 
LCS_GDT     D     290     D     290      3    7   10     3    3    4    5    6    7    7    8    9   11   11   12   15   15   17   19   20   22   24   28 
LCS_GDT     H     291     H     291      3    7   10     3    3    4    4    5    7    7    8    9   10   12   14   15   18   21   25   25   26   31   33 
LCS_GDT     T     292     T     292      3    6   10     3    3    4    4    5    5    6    9   10   13   15   15   15   18   21   25   25   26   31   34 
LCS_GDT     G     293     G     293      4    4    7     3    4    4    4    4    4    4    5    8   11   12   13   17   18   20   23   26   29   32   34 
LCS_GDT     Y     294     Y     294      4    4   10     3    4    4    4    4    4    6    7   11   12   12   14   17   18   24   25   30   38   41   41 
LCS_GDT     Y     295     Y     295      4    5   11     3    4    4    5    6    8    9   10   11   13   15   18   19   28   30   33   34   38   41   47 
LCS_GDT     N     296     N     296      4    5   13     3    4    4    4    4    7    9   10   11   13   15   18   19   28   30   33   34   38   41   41 
LCS_GDT     E     297     E     297      3    5   13     3    3    3    5    6    8    9   10   11   17   19   20   25   28   32   37   39   40   43   50 
LCS_GDT     V     298     V     298      3    5   13     3    3    3    5    6    8    9   10   12   17   19   20   25   28   32   37   39   40   44   52 
LCS_GDT     D     299     D     299      3    5   14     0    3    3    5    7    8    9   10   11   17   19   20   25   28   32   37   39   43   47   52 
LCS_GDT     S     300     S     300      3    8   14     0    3    4    5    7    9   10   11   12   16   18   19   20   21   25   33   34   38   41   41 
LCS_GDT     F     301     F     301      7    8   14     5    6    6    7    8    9   11   12   13   16   19   20   23   28   30   33   34   38   43   47 
LCS_GDT     P     302     P     302      7    8   14     5    6    6    7    8    9   10   12   13   17   19   20   28   28   33   37   39   43   48   52 
LCS_GDT     V     303     V     303      7    8   14     5    6    6    7    8   10   11   14   17   18   23   27   30   33   35   37   41   43   48   52 
LCS_GDT     F     304     F     304      7    9   14     5    6    6    7    9   10   11   13   17   18   23   27   30   33   35   37   41   43   48   52 
LCS_GDT     T     305     T     305      7    9   14     5    6    6    7    9   10   11   13   18   21   25   27   29   33   35   37   41   43   48   52 
LCS_GDT     V     306     V     306      7    9   14     3    6    6    7    8   10   11   12   14   21   21   24   28   30   33   35   36   38   45   49 
LCS_GDT     T     307     T     307      7    9   14     3    4    5    7    9   10   11   12   14   16   18   22   26   29   32   34   34   38   40   43 
LCS_GDT     H     308     H     308      5    9   14     3    4    5    7    9   10   11   12   13   16   18   19   22   25   29   32   33   36   39   43 
LCS_GDT     I     309     I     309      5    9   14     3    4    5    7    9   10   11   12   16   16   18   19   20   23   27   29   32   36   39   43 
LCS_GDT     T     310     T     310      5    9   14     3    4    6    7    9   10   11   12   13   16   18   19   20   21   27   28   32   36   39   43 
LCS_GDT     Q     311     Q     311      5    9   14     3    4    6    7    9   10   11   12   13   16   18   19   20   21   27   28   32   36   39   42 
LCS_GDT     R     312     R     312      5    9   14     3    4    6    7    9   10   11   12   13   16   18   19   20   21   23   28   32   36   39   42 
LCS_GDT     E     313     E     313      4    9   14     3    4    6    7    7   10   11   12   13   14   18   19   20   21   23   25   32   36   39   42 
LCS_AVERAGE  LCS_A:   5.46  (   3.13    4.54    8.70 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     13     13     14     15     15     17     17     20     22     25     27     30     33     35     37     41     43     48     52 
GDT PERCENT_CA   4.69   6.77   6.77   7.29   7.81   7.81   8.85   8.85  10.42  11.46  13.02  14.06  15.62  17.19  18.23  19.27  21.35  22.40  25.00  27.08
GDT RMS_LOCAL    0.26   0.69   0.69   1.33   1.50   1.50   1.94   1.94   3.18   3.76   3.83   4.07   4.46   4.75   4.93   5.43   5.80   6.06   6.53   6.90
GDT RMS_ALL_CA  35.38  33.85  33.85  31.78  31.16  31.16  31.02  31.02  24.84  25.33  24.56  25.03  24.31  24.06  24.14  22.59  22.58  22.47  22.45  22.47

#      Molecule1      Molecule2       DISTANCE
LGA    T     122      T     122         35.658
LGA    K     123      K     123         30.834
LGA    R     124      R     124         34.249
LGA    L     125      L     125         31.263
LGA    R     126      R     126         31.156
LGA    G     127      G     127         30.240
LGA    A     128      A     128         27.950
LGA    P     129      P     129         26.926
LGA    N     143      N     143         48.325
LGA    R     144      R     144         45.770
LGA    I     145      I     145         42.240
LGA    P     146      P     146         42.819
LGA    I     147      I     147         41.681
LGA    M     148      M     148         41.930
LGA    T     149      T     149         41.834
LGA    C     150      C     150         39.402
LGA    W     151      W     151         39.393
LGA    P     152      P     152         39.301
LGA    P     157      P     157         39.725
LGA    L     158      L     158         44.749
LGA    I     159      I     159         40.805
LGA    T     160      T     160         43.687
LGA    W     161      W     161         41.525
LGA    G     162      G     162         38.538
LGA    L     163      L     163         35.190
LGA    T     164      T     164         36.325
LGA    V     165      V     165         35.834
LGA    T     166      T     166         35.725
LGA    R     167      R     167         33.069
LGA    P     169      P     169         27.962
LGA    H     170      H     170         28.940
LGA    K     171      K     171         25.327
LGA    E     172      E     172         24.140
LGA    R     173      R     173         22.924
LGA    Q     174      Q     174         21.362
LGA    N     175      N     175         22.338
LGA    L     176      L     176         20.897
LGA    G     177      G     177         22.525
LGA    I     178      I     178         24.654
LGA    Y     179      Y     179         26.924
LGA    R     180      R     180         29.684
LGA    Q     181      Q     181         34.031
LGA    Q     182      Q     182         40.311
LGA    L     183      L     183         42.070
LGA    I     184      I     184         42.192
LGA    I     190      I     190         42.566
LGA    M     191      M     191         38.319
LGA    R     192      R     192         37.308
LGA    W     193      W     193         35.436
LGA    L     194      L     194         34.535
LGA    S     195      S     195         34.622
LGA    H     196      H     196         33.940
LGA    R     197      R     197         26.947
LGA    G     198      G     198         22.871
LGA    G     199      G     199         21.674
LGA    A     200      A     200         25.441
LGA    L     201      L     201         27.645
LGA    D     202      D     202         25.017
LGA    Y     203      Y     203         25.773
LGA    Q     204      Q     204         30.423
LGA    E     205      E     205         30.307
LGA    W     206      W     206         27.758
LGA    C     207      C     207         31.010
LGA    A     208      A     208         34.444
LGA    A     209      A     209         33.265
LGA    H     210      H     210         31.654
LGA    V     217      V     217         25.434
LGA    S     218      S     218         22.108
LGA    V     219      V     219         20.667
LGA    A     220      A     220         17.188
LGA    L     221      L     221         17.537
LGA    G     222      G     222         13.019
LGA    A     223      A     223          7.702
LGA    D     224      D     224          0.821
LGA    P     225      P     225          1.274
LGA    A     226      A     226          0.605
LGA    T     227      T     227          0.968
LGA    I     228      I     228          1.395
LGA    L     229      L     229          1.568
LGA    G     230      G     230          1.445
LGA    A     231      A     231          0.848
LGA    V     232      V     232          1.316
LGA    T     233      T     233          2.534
LGA    P     234      P     234          1.333
LGA    V     235      V     235          1.463
LGA    P     236      P     236          3.665
LGA    D     237      D     237          1.131
LGA    T     238      T     238          3.805
LGA    L     239      L     239         22.051
LGA    S     240      S     240         18.399
LGA    E     241      E     241         14.357
LGA    Y     242      Y     242         11.155
LGA    A     243      A     243         13.199
LGA    F     244      F     244         15.682
LGA    A     245      A     245         12.881
LGA    G     246      G     246         12.014
LGA    L     247      L     247         16.317
LGA    L     248      L     248         18.813
LGA    R     249      R     249         17.329
LGA    G     250      G     250         17.684
LGA    T     251      T     251         19.272
LGA    K     252      K     252         14.194
LGA    T     253      T     253         13.934
LGA    E     254      E     254          9.745
LGA    V     255      V     255          2.701
LGA    V     256      V     256          2.140
LGA    K     257      K     257          8.763
LGA    C     258      C     258         13.527
LGA    D     262      D     262         14.660
LGA    L     263      L     263         17.545
LGA    E     264      E     264         19.116
LGA    V     265      V     265         19.021
LGA    P     266      P     266         21.432
LGA    S     268      S     268         21.592
LGA    A     269      A     269         21.905
LGA    E     270      E     270         21.483
LGA    I     271      I     271         19.284
LGA    V     272      V     272         20.874
LGA    L     273      L     273         21.264
LGA    E     274      E     274         25.925
LGA    G     275      G     275         29.025
LGA    E     278      E     278         41.408
LGA    Q     279      Q     279         46.124
LGA    G     280      G     280         47.541
LGA    E     281      E     281         43.016
LGA    T     282      T     282         41.500
LGA    A     283      A     283         37.163
LGA    P     284      P     284         37.531
LGA    E     285      E     285         33.231
LGA    G     286      G     286         30.803
LGA    P     287      P     287         34.180
LGA    Y     288      Y     288         31.833
LGA    G     289      G     289         35.821
LGA    D     290      D     290         37.410
LGA    H     291      H     291         39.363
LGA    T     292      T     292         46.566
LGA    G     293      G     293         54.205
LGA    Y     294      Y     294         55.151
LGA    Y     295      Y     295         57.712
LGA    N     296      N     296         60.305
LGA    E     297      E     297         60.572
LGA    V     298      V     298         61.275
LGA    D     299      D     299         59.783
LGA    S     300      S     300         55.894
LGA    F     301      F     301         52.022
LGA    P     302      P     302         46.059
LGA    V     303      V     303         42.076
LGA    F     304      F     304         36.511
LGA    T     305      T     305         32.771
LGA    V     306      V     306         28.819
LGA    T     307      T     307         25.083
LGA    H     308      H     308         18.929
LGA    I     309      I     309         12.374
LGA    T     310      T     310          8.866
LGA    Q     311      Q     311          8.263
LGA    R     312      R     312         11.120
LGA    E     313      E     313         15.249

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  157  192    4.0     17    1.94    10.547     8.920     0.834

LGA_LOCAL      RMSD =  1.939  Number of atoms =   17  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 31.023  Number of atoms =  157 
Std_ALL_ATOMS  RMSD = 19.633  (standard rmsd on all 157 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.143905 * X  +  -0.508125 * Y  +  -0.849176 * Z  + 104.388199
  Y_new =  -0.985992 * X  +   0.000497 * Y  +   0.166793 * Z  + 100.270432
  Z_new =  -0.084330 * X  +   0.861283 * Y  +  -0.501079 * Z  +  72.542351 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.097712   -1.043880  [ DEG:   120.1900    -59.8099 ]
  Theta =   0.084430    3.057162  [ DEG:     4.8375    175.1625 ]
  Phi   =  -1.715722    1.425870  [ DEG:   -98.3037     81.6963 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS677_1-D2                               
REMARK     2: T0356_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS677_1-D2.T0356_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  157  192   4.0   17   1.94   8.920    19.63
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS677_1-D2
PFRMAT TS
TARGET T0356
MODEL  1
PARENT 2D1Q_A
ATOM    184  CA  THR   122      98.156 109.099  74.645  1.00 94.00
ATOM    185  CA  LYS   123      96.598 106.940  77.393  1.00 99.00
ATOM    186  CA  ARG   124      96.237 108.446  80.872  1.00 83.00
ATOM    187  CA  LEU   125      98.177 106.842  83.736  1.00 63.00
ATOM    188  CA  ARG   126      96.175 106.433  86.901  1.00 70.00
ATOM    189  CA  GLY   127      96.645 105.301  90.485  1.00 75.00
ATOM    190  CA  ALA   128      95.989 101.635  89.809  1.00 44.00
ATOM    191  CA  PRO   129      94.818 100.356  93.182  1.00 67.00
ATOM    192  CA  ASN   143      92.476 103.347  93.699  1.00 99.00
ATOM    193  CA  ARG   144      91.062 104.318  90.242  1.00 99.00
ATOM    194  CA  ILE   145      87.647 102.784  89.513  1.00 99.00
ATOM    195  CA  PRO   146      87.560 101.387  85.968  1.00 99.00
ATOM    196  CA  ILE   147      84.160  99.663  85.821  1.00 97.00
ATOM    197  CA  MET   148      80.879  99.764  87.742  1.00 86.00
ATOM    198  CA  THR   149      79.283  96.338  87.409  1.00 92.00
ATOM    199  CA  CYS   150      75.928  94.851  88.344  1.00 77.00
ATOM    200  CA  TRP   151      75.454  91.168  89.236  1.00 83.00
ATOM    201  CA  PRO   152      72.714  88.930  87.686  1.00 73.00
ATOM    206  CA  PRO   157      67.810  96.070  93.279  1.00 84.00
ATOM    211  CA  LEU   158      83.520  99.051  91.826  1.00 74.00
ATOM    212  CA  ILE   159      86.416  97.409  90.034  1.00 61.00
ATOM    213  CA  THR   160      89.814  99.076  89.743  1.00 52.00
ATOM    214  CA  TRP   161      92.624  99.044  87.148  1.00 86.00
ATOM    215  CA  GLY   162      94.557  96.712  89.454  1.00 66.00
ATOM    216  CA  LEU   163      91.660  94.206  89.433  1.00 84.00
ATOM    217  CA  THR   164      91.666  94.325  85.625  1.00 99.00
ATOM    218  CA  VAL   165      95.423  94.045  84.978  1.00 99.00
ATOM    219  CA  THR   166      95.382  90.917  87.185  1.00 99.00
ATOM    220  CA  ARG   167      92.713  89.340  84.988  1.00 99.00
ATOM    232  CA  PRO   169      97.761  80.662  74.895  1.00 91.00
ATOM    233  CA  HIS   170      98.314  83.765  72.790  1.00 92.00
ATOM    234  CA  LYS   171      97.476  82.822  69.157  1.00 99.00
ATOM    235  CA  GLU   172      96.261  85.753  66.974  1.00 99.00
ATOM    236  CA  ARG   173      93.573  84.932  64.425  1.00 91.00
ATOM    237  CA  GLN   174      92.199  82.027  66.488  1.00 99.00
ATOM    238  CA  ASN   175      88.379  82.323  66.449  1.00 78.00
ATOM    239  CA  LEU   176      86.373  81.969  69.692  1.00 51.00
ATOM    240  CA  GLY   177      82.564  81.766  69.848  1.00 31.00
ATOM    241  CA  ILE   178      80.854  83.654  72.683  1.00 50.00
ATOM    242  CA  TYR   179      77.171  83.673  73.668  1.00 41.00
ATOM    243  CA  ARG   180      77.649  85.336  77.090  1.00 61.00
ATOM    244  CA  GLN   181      76.291  88.837  77.953  1.00 64.00
ATOM    245  CA  GLN   182      78.942  91.554  77.608  1.00 73.00
ATOM    246  CA  LEU   183      77.582  93.891  80.329  1.00 83.00
ATOM    247  CA  ILE   184      78.083  91.197  82.960  1.00 99.00
ATOM    263  CA  ILE   190      88.847  86.749  66.751  1.00 90.00
ATOM    264  CA  MET   191      85.737  87.194  68.879  1.00 83.00
ATOM    265  CA  ARG   192      82.747  85.633  67.183  1.00 93.00
ATOM    266  CA  TRP   193      79.614  86.928  68.823  1.00 71.00
ATOM    267  CA  LEU   194      76.179  85.345  68.635  1.00 62.00
ATOM    268  CA  SER   195      73.394  87.525  70.053  1.00 62.00
ATOM    269  CA  HIS   196      70.305  85.390  69.907  1.00 63.00
ATOM    270  CA  ARG   197      70.921  81.662  70.278  1.00 47.00
ATOM    271  CA  GLY   198      69.610  79.281  67.643  1.00 47.00
ATOM    272  CA  GLY   199      70.559  75.595  67.280  1.00 53.00
ATOM    273  CA  ALA   200      71.253  75.633  63.528  1.00 60.00
ATOM    274  CA  LEU   201      72.911  79.095  63.580  1.00 57.00
ATOM    275  CA  ASP   202      75.041  78.040  66.536  1.00 74.00
ATOM    276  CA  TYR   203      76.385  74.985  64.641  1.00 89.00
ATOM    277  CA  GLN   204      76.768  76.825  61.287  1.00 83.00
ATOM    278  CA  GLU   205      78.789  79.506  63.077  1.00 97.00
ATOM    279  CA  TRP   206      81.141  76.980  64.760  1.00 99.00
ATOM    280  CA  CYS   207      81.784  75.443  61.363  1.00 99.00
ATOM    281  CA  ALA   208      81.987  78.602  59.188  1.00 99.00
ATOM    282  CA  ALA   209      84.442  80.419  61.439  1.00 83.00
ATOM    283  CA  HIS   210      86.393  77.293  62.378  1.00 72.00
ATOM    284  CA  VAL   217      85.983  78.226  66.020  1.00 90.00
ATOM    285  CA  SER   218      88.611  76.765  68.301  1.00 97.00
ATOM    286  CA  VAL   219      86.730  77.396  71.472  1.00 99.00
ATOM    287  CA  ALA   220      83.263  78.277  72.708  1.00 99.00
ATOM    288  CA  LEU   221      82.080  79.882  75.929  1.00 94.00
ATOM    289  CA  GLY   222      78.531  79.241  77.143  1.00 69.00
ATOM    290  CA  ALA   223      76.036  79.587  79.946  1.00 63.00
ATOM    291  CA  ASP   224      74.940  76.194  81.377  1.00 54.00
ATOM    292  CA  PRO   225      71.385  76.443  79.986  1.00 75.00
ATOM    293  CA  ALA   226      72.719  75.845  76.481  1.00 95.00
ATOM    294  CA  THR   227      74.298  72.462  77.260  1.00 99.00
ATOM    295  CA  ILE   228      70.789  71.005  77.531  1.00 99.00
ATOM    296  CA  LEU   229      70.156  71.883  73.895  1.00 91.00
ATOM    297  CA  GLY   230      73.551  70.448  72.693  1.00 99.00
ATOM    298  CA  ALA   231      73.069  67.132  74.501  1.00 86.00
ATOM    299  CA  VAL   232      69.728  66.544  72.730  1.00 67.00
ATOM    300  CA  THR   233      70.742  67.987  69.331  1.00 99.00
ATOM    301  CA  PRO   234      70.311  65.705  66.310  1.00 99.00
ATOM    302  CA  VAL   235      72.158  68.157  64.078  1.00 81.00
ATOM    303  CA  PRO   236      75.754  67.844  65.443  1.00 91.00
ATOM    304  CA  ASP   237      76.738  65.363  62.770  1.00 80.00
ATOM    305  CA  THR   238      75.748  67.450  59.724  1.00 54.00
ATOM    322  CA  LEU   239      75.139  69.281  85.773  1.00 78.00
ATOM    323  CA  SER   240      78.240  67.044  85.875  1.00 60.00
ATOM    324  CA  GLU   241      76.329  64.328  83.930  1.00 67.00
ATOM    325  CA  TYR   242      75.116  66.668  81.170  1.00 99.00
ATOM    326  CA  ALA   243      78.595  68.255  80.949  1.00 99.00
ATOM    327  CA  PHE   244      80.245  64.823  80.595  1.00 74.00
ATOM    328  CA  ALA   245      77.731  63.769  77.920  1.00 82.00
ATOM    329  CA  GLY   246      78.364  67.004  75.946  1.00 90.00
ATOM    330  CA  LEU   247      82.148  66.538  76.222  1.00 59.00
ATOM    331  CA  LEU   248      81.632  63.002  74.902  1.00 40.00
ATOM    332  CA  ARG   249      79.482  64.182  71.972  1.00 60.00
ATOM    333  CA  GLY   250      82.134  66.727  70.835  1.00 66.00
ATOM    334  CA  THR   251      84.977  64.243  71.434  1.00 51.00
ATOM    335  CA  LYS   252      86.695  66.394  74.060  1.00 60.00
ATOM    336  CA  THR   253      88.302  65.399  77.400  1.00 97.00
ATOM    337  CA  GLU   254      85.998  67.606  79.478  1.00 99.00
ATOM    338  CA  VAL   255      84.361  70.977  79.987  1.00 99.00
ATOM    339  CA  VAL   256      86.467  73.936  81.032  1.00 99.00
ATOM    340  CA  LYS   257      84.678  75.633  83.938  1.00 99.00
ATOM    341  CA  CYS   258      85.275  79.012  85.539  1.00 99.00
ATOM    365  CA  ASP   262      88.691  73.928  88.790  1.00 99.00
ATOM    366  CA  LEU   263      91.526  75.225  90.919  1.00 99.00
ATOM    367  CA  GLU   264      92.497  78.454  92.646  1.00 99.00
ATOM    368  CA  VAL   265      93.887  80.995  90.159  1.00 99.00
ATOM    369  CA  PRO   266      97.382  82.491  90.574  1.00 99.00
ATOM    370  CA  SER   268      97.659  85.121  93.350  1.00 99.00
ATOM    371  CA  ALA   269      94.487  83.995  95.139  1.00 76.00
ATOM    372  CA  GLU   270      93.687  82.140  98.338  1.00 83.00
ATOM    373  CA  ILE   271      90.575  80.116  99.117  1.00 74.00
ATOM    374  CA  VAL   272      89.069  78.441 102.174  1.00 64.00
ATOM    375  CA  LEU   273      85.899  76.553 103.034  1.00 43.00
ATOM    376  CA  GLU   274      84.228  77.522 106.341  1.00 58.00
ATOM    377  CA  GLY   275      81.786  75.598 108.508  1.00 57.00
ATOM    379  CA  GLU   278      77.838  76.844 112.187  1.00 50.00
ATOM    380  CA  GLN   279      81.302  77.437 113.701  1.00 55.00
ATOM    381  CA  GLY   280      83.003  79.655 111.043  1.00 75.00
ATOM    382  CA  GLU   281      86.028  77.317 111.278  1.00 66.00
ATOM    383  CA  THR   282      88.131  76.189 108.296  1.00 61.00
ATOM    384  CA  ALA   283      87.488  72.758 106.802  1.00 77.00
ATOM    385  CA  PRO   284      89.684  70.037 105.302  1.00 56.00
ATOM    386  CA  GLU   285      88.904  68.326 101.969  1.00 49.00
ATOM    387  CA  GLY   286      85.495  66.706 101.265  1.00 67.00
ATOM    388  CA  PRO   287      83.574  68.800 103.811  1.00 50.00
ATOM    389  CA  TYR   288      80.885  71.197 102.495  1.00 49.00
ATOM    390  CA  GLY   289      80.785  74.812 103.672  1.00 50.00
ATOM    391  CA  ASP   290      80.952  78.429 102.555  1.00 57.00
ATOM    392  CA  HIS   291      83.649  79.390 100.041  1.00 27.00
ATOM    393  CA  THR   292      85.756  82.437 100.980  1.00 24.00
ATOM    402  CA  GLY   293      83.567  98.243  97.320  1.00 59.00
ATOM    403  CA  TYR   294      79.900  98.962  96.577  1.00 71.00
ATOM    404  CA  TYR   295      79.159 102.547  95.474  1.00 67.00
ATOM    405  CA  ASN   296      77.770 104.476  98.484  1.00 99.00
ATOM    406  CA  GLU   297      77.106 101.231 100.399  1.00 99.00
ATOM    407  CA  VAL   298      79.794 100.840 103.115  1.00 90.00
ATOM    408  CA  ASP   299      77.343  98.654 105.090  1.00 99.00
ATOM    417  CA  SER   300      90.615  89.736 107.860  1.00 99.00
ATOM    418  CA  PHE   301      90.080  90.661 104.214  1.00 99.00
ATOM    419  CA  PRO   302      88.265  87.446 103.164  1.00 99.00
ATOM    420  CA  VAL   303      85.247  87.833 100.881  1.00 99.00
ATOM    421  CA  PHE   304      82.326  85.543 101.730  1.00 99.00
ATOM    422  CA  THR   305      80.857  84.222  98.484  1.00 99.00
ATOM    423  CA  VAL   306      77.515  83.067  99.867  1.00 77.00
ATOM    424  CA  THR   307      78.242  79.911  97.814  1.00 75.00
ATOM    425  CA  HIS   308      78.436  76.386  99.115  1.00 65.00
ATOM    426  CA  ILE   309      81.204  74.073  97.984  1.00 48.00
ATOM    427  CA  THR   310      84.130  71.821  98.875  1.00 58.00
ATOM    428  CA  GLN   311      87.573  70.752  97.653  1.00 78.00
ATOM    429  CA  ARG   312      88.986  67.268  97.323  1.00 90.00
ATOM    430  CA  GLU   313      92.372  65.760  98.280  1.00 98.00
TER
END
