
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  132 , name T0357TS168_1
# Molecule2: number of CA atoms  132 ( 2030),  selected  132 , name T0357.pdb
# PARAMETERS: T0357TS168_1.T0357.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39        68 - 106         4.94    13.98
  LCS_AVERAGE:     18.88

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        81 - 104         1.92    14.19
  LCS_AVERAGE:      8.58

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        87 - 100         0.99    14.92
  LCS_AVERAGE:      4.42

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     V       2     V       2      4    4   14     3    4    4    4    6    9   12   12   12   15   17   24   25   30   34   39   40   41   45   48 
LCS_GDT     K       3     K       3      4    5   14     3    4    4    7    7    9   12   12   12   15   17   18   19   22   34   39   40   44   51   61 
LCS_GDT     F       4     F       4      4    9   14     3    4    4    6    7    9   12   12   12   15   17   18   19   21   25   30   36   41   45   54 
LCS_GDT     A       5     A       5      4    9   14     3    4    4    5    7    9   12   12   12   15   17   18   19   22   25   33   37   41   45   49 
LCS_GDT     C       6     C       6      3    9   14     3    4    5    7    7    9   12   12   15   17   18   24   25   30   37   41   49   52   58   61 
LCS_GDT     R       7     R       7      3    9   14     3    4    5    7    7    9   12   12   15   17   18   23   25   30   34   39   49   52   58   58 
LCS_GDT     A       8     A       8      4    9   14     3    3    5    7    7    9   12   12   13   17   18   23   25   30   34   39   49   52   58   58 
LCS_GDT     I       9     I       9      4    9   17     3    4    5    7    7    9   12   12   13   15   16   23   25   26   29   33   37   38   42   49 
LCS_GDT     T      10     T      10      4    9   18     3    4    5    7    7    9   12   12   15   17   18   23   25   28   37   41   49   52   58   58 
LCS_GDT     R      11     R      11      4    9   18     3    4    5    7    7    9   12   12   12   14   17   23   27   31   37   41   49   53   58   62 
LCS_GDT     G      12     G      12      3    9   21     3    4    5    7    7    9   12   12   14   17   19   28   32   36   42   44   49   53   59   64 
LCS_GDT     R      13     R      13      3    8   21     3    3    5    7    8    9   12   13   14   16   17   26   30   37   42   44   49   59   63   67 
LCS_GDT     A      14     A      14      3    7   21     3    3    4    7   10   12   12   21   35   37   42   47   55   61   62   63   65   70   76   83 
LCS_GDT     E      15     E      15      3    7   21     0    3    7   10   15   19   24   31   37   41   47   53   55   61   62   63   65   70   74   80 
LCS_GDT     G      16     G      16      4    7   21     0    3    7   10   15   19   22   31   37   41   47   53   55   61   62   63   65   70   71   75 
LCS_GDT     E      17     E      17      4    7   21     1    4    7   10   15   19   23   31   37   41   47   53   55   61   62   63   65   70   71   75 
LCS_GDT     A      18     A      18      4    7   21     3    4    7   10   14   19   21   24   37   41   47   53   55   61   62   63   65   70   71   75 
LCS_GDT     L      19     L      19      4    7   21     3    4    5    8   10   15   19   23   26   30   40   53   55   61   62   63   65   70   72   79 
LCS_GDT     V      20     V      20      4    7   21     3    4    7    9   14   18   21   23   26   33   47   53   55   61   62   63   65   70   76   82 
LCS_GDT     T      21     T      21      3    7   21     1    4    5    9   12   15   21   25   34   38   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     K      22     K      22      3    7   21     3    4    7   10   16   29   30   33   37   41   47   53   55   61   62   64   70   73   78   82 
LCS_GDT     E      23     E      23      3    7   21     3    8   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   82 
LCS_GDT     Y      24     Y      24      3    7   21     3    3    4    6    9   12   12   17   29   37   45   47   49   55   58   64   70   74   78   85 
LCS_GDT     I      25     I      25      3    7   21     3    3    6    7    9   12   12   20   31   37   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     S      26     S      26      4    6   21     3    3    4    6    9   11   12   16   20   25   28   39   43   51   56   61   70   74   78   85 
LCS_GDT     F      27     F      27      4    6   21     3    3    6    7   14   17   21   24   29   37   40   45   49   53   58   64   70   74   78   85 
LCS_GDT     L      28     L      28      4    6   21     3    3    6    7   12   17   20   24   28   31   38   42   46   53   58   64   70   74   78   85 
LCS_GDT     G      29     G      29      4    6   21     3    4    6    7    9   17   21   24   28   31   38   42   46   53   58   64   70   74   78   85 
LCS_GDT     G      30     G      30      4    6   21     3    4    4    6    9   11   12   22   31   37   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     I      31     I      31      3    6   21     3    4    6   10   15   20   25   28   35   38   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     D      32     D      32      3    6   21     3    3    6    8   15   17   21   24   30   37   40   42   49   53   58   64   70   74   78   85 
LCS_GDT     K      33     K      33      3    8   21     3    3    3    5    7    9   14   19   23   25   28   34   38   43   49   55   63   69   78   83 
LCS_GDT     E      34     E      34      6    8   16     4    5    6    6    7    8    8    8   10   13   15   30   38   49   52   58   63   69   78   84 
LCS_GDT     T      35     T      35      6    8   14     4    5    6    6    7    8    8    9   10   13   15   16   18   26   52   57   65   74   78   85 
LCS_GDT     G      36     G      36      6    8   14     4    5    6    6    7    8    8    9   10   13   16   26   35   47   50   58   63   74   78   85 
LCS_GDT     I      37     I      37      6    8   14     4    5    6    6    7    8    8    9   10   11   15   16   18   33   48   57   65   73   77   85 
LCS_GDT     V      38     V      38      6    8   14     3    5    6    6    7    8    9   10   14   16   17   22   34   42   51   58   65   73   77   85 
LCS_GDT     K      39     K      39      6    8   14     3    5    6    6    7    8    9   10   14   16   17   20   20   23   28   49   61   68   74   80 
LCS_GDT     E      40     E      40      3    8   14     3    3    4    5    6    8   10   13   14   23   29   31   35   45   51   58   65   73   77   85 
LCS_GDT     D      41     D      41      3    6   14     3    3    4    5    6    9   12   17   23   27   31   37   42   49   54   59   66   73   78   85 
LCS_GDT     C      42     C      42      3    6   14     1    3    4    5    6    9   11   15   21   26   29   37   42   48   53   59   66   73   77   85 
LCS_GDT     E      43     E      43      4    7   14     3    4    4    5    8    9   12   17   21   26   30   37   42   49   54   59   66   73   78   85 
LCS_GDT     I      44     I      44      4    7   14     3    4    4    5    7    9   12   17   21   26   30   37   42   49   54   59   66   73   78   85 
LCS_GDT     K      45     K      45      5    7   14     3    4    7    9   11   11   12   16   21   26   29   31   36   42   44   50   57   62   70   78 
LCS_GDT     G      46     G      46      5    7   14     3    4    7    9   11   11   12   16   21   26   29   31   36   42   44   50   58   62   69   78 
LCS_GDT     E      47     E      47      5    7   14     3    4    5    9   11   11   12   16   21   26   29   31   36   42   45   51   58   65   74   80 
LCS_GDT     S      48     S      48      5    7   14     3    4    5    8   11   11   12   18   24   27   31   34   38   43   49   55   62   68   74   80 
LCS_GDT     V      49     V      49      5    7   15     3    4    5    9   11   11   12   18   24   27   31   34   39   47   51   58   65   73   77   82 
LCS_GDT     A      50     A      50      4    8   19     3    3    6    7    8    9   13   17   23   30   34   39   44   48   51   58   62   69   76   82 
LCS_GDT     G      51     G      51      4    8   20     3    4    6   10   13   16   24   31   34   37   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     R      52     R      52      4    8   20     2    4   11   16   22   27   28   33   36   38   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     I      53     I      53      5    8   20     5    7    7   11   13   16   29   33   36   38   45   47   49   53   59   64   70   74   78   85 
LCS_GDT     L      54     L      54      5    8   20     3    7    9   11   15   20   25   31   36   38   45   47   49   53   59   64   70   74   78   85 
LCS_GDT     V      55     V      55      5    8   20     5    7    9   19   23   27   30   33   36   38   45   53   55   61   62   64   70   74   78   85 
LCS_GDT     F      56     F      56      5    8   20     3    4    6   11   16   25   28   33   36   38   45   53   55   61   62   64   70   74   78   85 
LCS_GDT     P      57     P      57      5    8   20     5    8   14   20   23   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     G      58     G      58      5    8   20     5    8   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     G      59     G      59      5    8   20     3    4    8   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     K      60     K      60      5    8   20     3    4    5    6    8   10   15   20   24   30   34   42   45   49   55   64   70   74   78   85 
LCS_GDT     G      61     G      61      5    8   20     4    4    5    9   13   17   26   31   35   38   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     S      62     S      62      5    6   21     4    4    6   11   15   17   25   28   35   38   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     T      63     T      63      5    5   22     4    4    5    5    6    8   11   18   24   29   34   38   46   51   56   60   70   74   78   85 
LCS_GDT     V      64     V      64      5   12   22     4    4    6   10   11   11   15   18   24   29   36   40   46   51   55   60   70   74   78   85 
LCS_GDT     G      65     G      65     10   12   22     9   10   10   11   15   17   23   28   31   37   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     S      66     S      66     10   12   22     4   10   10   11   15   17   21   25   31   37   41   47   49   53   58   64   70   74   78   85 
LCS_GDT     Y      67     Y      67     10   12   38     9   10   10   10   11   11   18   20   31   36   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     V      68     V      68     10   12   39     9   10   10   10   11   11   15   30   36   38   45   47   49   55   59   64   70   74   78   85 
LCS_GDT     L      69     L      69     10   12   39     9   10   10   11   14   17   20   25   34   37   41   47   55   61   62   64   70   74   78   85 
LCS_GDT     L      70     L      70     10   12   39     9   10   10   10   11   14   29   33   36   38   45   48   55   61   62   64   70   74   78   85 
LCS_GDT     N      71     N      71     10   12   39     9   10   10   10   11   11   12   13   15   18   24   34   44   61   62   63   65   70   76   84 
LCS_GDT     L      72     L      72     10   12   39     9   10   10   10   14   18   23   31   37   41   47   53   55   61   62   63   65   70   71   75 
LCS_GDT     R      73     R      73     10   12   39     9   10   10   10   15   19   25   31   37   41   47   53   55   61   62   63   65   70   72   81 
LCS_GDT     K      74     K      74     10   12   39     9   10   10   10   11   11   12   24   27   32   41   51   55   61   62   63   65   70   71   75 
LCS_GDT     N      75     N      75      3   12   39     3    4    5    7    8   13   17   21   26   30   40   45   55   60   60   61   64   68   71   72 
LCS_GDT     G      76     G      76      3    8   39     3    4    5    7    8   10   16   20   23   29   39   45   51   54   57   59   63   66   70   72 
LCS_GDT     V      77     V      77      4    9   39     3    4    6    7    9   12   18   21   25   32   40   45   51   54   57   60   63   67   71   75 
LCS_GDT     A      78     A      78      4    9   39     3    4    6    7   13   23   29   32   34   37   41   45   55   60   62   63   66   73   77   85 
LCS_GDT     P      79     P      79      5    9   39     3    4    6    7   12   23   29   32   34   37   46   53   55   61   62   63   69   74   78   85 
LCS_GDT     K      80     K      80      5   22   39     1    4    8   12   20   25   29   32   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     A      81     A      81      5   24   39     1   12   14   16   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     I      82     I      82      5   24   39     2    4    6   12   21   29   30   32   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     I      83     I      83      5   24   39     3    5    8   16   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     N      84     N      84      3   24   39     3    3   11   18   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     K      85     K      85      4   24   39     3    3    9   12   21   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     K      86     K      86      4   24   39     5    7    9   12   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     T      87     T      87     14   24   39     5    7    8   16   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     E      88     E      88     14   24   39     3   10   16   20   24   29   30   33   36   39   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     T      89     T      89     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     I      90     I      90     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     I      91     I      91     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     A      92     A      92     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     V      93     V      93     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   63   68   73   78   85 
LCS_GDT     G      94     G      94     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     A      95     A      95     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     A      96     A      96     14   24   39    10   12   16   20   24   29   30   33   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     M      97     M      97     14   24   39     7   12   16   20   24   29   30   33   37   41   47   53   55   61   62   63   67   73   77   85 
LCS_GDT     A      98     A      98     14   24   39    10   12   16   20   24   29   30   33   36   39   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     E      99     E      99     14   24   39    10   12   16   20   24   29   30   33   36   38   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     I     100     I     100     14   24   39     3   10   16   20   24   29   30   33   36   38   46   53   55   61   62   64   70   74   78   85 
LCS_GDT     P     101     P     101      4   24   39     4    4   10   18   24   29   30   33   36   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     L     102     L     102      4   24   39     4    6   14   20   24   29   30   33   36   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     V     103     V     103      4   24   39     4   10   16   20   24   29   30   33   36   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     E     104     E     104      4   24   39     4    4   16   20   23   29   30   33   36   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     V     105     V     105      3   22   39     3    8   11   14   22   27   30   33   36   38   45   47   49   53   58   64   70   74   78   85 
LCS_GDT     R     106     R     106      3    6   39     3    3    8   11   15   17   21   24   30   37   41   47   49   53   58   64   70   74   78   85 
LCS_GDT     D     107     D     107      3    9   33     3    5    6    8   11   17   21   24   28   31   34   39   45   53   58   64   70   74   78   85 
LCS_GDT     E     108     E     108      3    9   31     3    4    4    5    8   10   16   20   23   25   29   36   39   43   49   58   67   74   78   85 
LCS_GDT     K     109     K     109      7    9   21     6    6    6    8   10   13   16   20   24   31   34   36   42   48   56   64   70   74   78   85 
LCS_GDT     F     110     F     110      7    9   21     6    6    6    8   12   17   20   23   26   31   34   39   45   53   58   64   70   74   78   85 
LCS_GDT     F     111     F     111      7    9   21     6    6    6    8   10   13   19   20   28   31   34   39   43   53   58   64   70   74   78   85 
LCS_GDT     E     112     E     112      7    9   21     6    6    6    8    9   13   16   20   23   25   29   36   40   48   54   59   69   74   78   85 
LCS_GDT     A     113     A     113      7    9   21     6    6    6    8    9   10   16   20   23   25   30   34   39   43   52   58   69   74   78   85 
LCS_GDT     V     114     V     114      7    9   21     6    6    6    8   12   17   19   23   25   31   34   39   45   53   58   64   70   74   78   85 
LCS_GDT     K     115     K     115      7    9   21     3    4    6    8   10   13   16   20   24   27   34   38   42   49   56   64   70   74   78   85 
LCS_GDT     T     116     T     116      4    6   21     3    4    4    5    6    8   10   14   17   23   28   37   42   49   54   59   66   73   78   85 
LCS_GDT     G     117     G     117      4    6   21     3    4    6    7    7    9    9   17   21   24   28   33   42   49   54   59   66   73   78   85 
LCS_GDT     D     118     D     118      4    6   21     3    4    4    5    6   10   12   14   20   24   30   34   37   46   52   59   69   74   78   85 
LCS_GDT     R     119     R     119      4    6   21     3    4    6    7    7   10   12   14   20   23   24   33   41   49   58   64   70   74   78   85 
LCS_GDT     V     120     V     120      4    6   21     3    4    6    8    8    9   26   32   34   39   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     V     121     V     121      4    6   21     3    3    5    6    9   13   16   21   27   40   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     V     122     V     122      4    7   21     0    3    5   10   15   19   25   31   37   41   47   53   55   61   62   64   70   74   78   85 
LCS_GDT     N     123     N     123      3   10   21     1    3    5    6   12   15   21   27   35   37   42   47   55   61   62   63   67   74   78   83 
LCS_GDT     A     124     A     124      6   10   19     1    6    6   10   12   19   22   27   35   37   42   49   55   61   62   64   70   74   78   85 
LCS_GDT     D     125     D     125      6   10   16     3    6    6   10   15   19   25   31   37   41   47   53   55   61   62   64   70   74   78   83 
LCS_GDT     E     126     E     126      6   10   16     3    6    6    6   15   19   25   31   37   41   47   53   55   61   62   64   70   74   78   82 
LCS_GDT     G     127     G     127      6   10   16     3    6    7   10   15   19   24   31   36   39   47   53   55   61   62   63   67   74   78   83 
LCS_GDT     Y     128     Y     128      6   10   16     3    6    7   10   15   19   25   31   37   41   47   53   55   61   62   63   65   70   77   82 
LCS_GDT     V     129     V     129      6   10   16     3    6    7    9   15   19   25   31   37   41   47   53   55   61   62   63   65   70   76   80 
LCS_GDT     E     130     E     130      4   10   16     3    4    6   10   15   19   25   31   37   41   47   53   55   61   62   63   65   70   71   76 
LCS_GDT     L     131     L     131      4   10   16     3    4    7   10   15   19   26   31   37   41   47   53   55   61   62   63   65   70   71   75 
LCS_GDT     I     132     I     132      4   10   16     3    4    7   10   15   19   25   31   37   41   47   53   55   61   62   63   65   70   71   75 
LCS_GDT     E     133     E     133      4   10   16     0    4    4    8   14   19   25   31   37   41   47   52   55   61   62   63   65   70   71   75 
LCS_AVERAGE  LCS_A:  10.63  (   4.42    8.58   18.88 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     12     16     20     24     29     30     33     37     41     47     53     55     61     62     64     70     74     78     85 
GDT PERCENT_CA   7.58   9.09  12.12  15.15  18.18  21.97  22.73  25.00  28.03  31.06  35.61  40.15  41.67  46.21  46.97  48.48  53.03  56.06  59.09  64.39
GDT RMS_LOCAL    0.22   0.43   1.05   1.31   1.80   2.06   2.11   2.42   3.25   3.55   3.92   4.29   4.33   4.65   4.72   5.61   6.00   6.35   6.53   7.12
GDT RMS_ALL_CA  15.69  15.43  14.03  13.96  13.95  13.95  13.93  13.90  14.84  14.89  14.81  14.61  14.62  14.45  14.47  12.35  12.13  11.92  11.88  11.99

#      Molecule1      Molecule2       DISTANCE
LGA    V       2      V       2         32.660
LGA    K       3      K       3         28.048
LGA    F       4      F       4         28.821
LGA    A       5      A       5         26.668
LGA    C       6      C       6         22.748
LGA    R       7      R       7         21.488
LGA    A       8      A       8         19.631
LGA    I       9      I       9         22.731
LGA    T      10      T      10         23.533
LGA    R      11      R      11         24.861
LGA    G      12      G      12         24.107
LGA    R      13      R      13         22.168
LGA    A      14      A      14         16.667
LGA    E      15      E      15         15.266
LGA    G      16      G      16         15.180
LGA    E      17      E      17         13.973
LGA    A      18      A      18         12.117
LGA    L      19      L      19         10.144
LGA    V      20      V      20          8.399
LGA    T      21      T      21          6.482
LGA    K      22      K      22          3.866
LGA    E      23      E      23          1.117
LGA    Y      24      Y      24          8.183
LGA    I      25      I      25          8.882
LGA    S      26      S      26         11.514
LGA    F      27      F      27         10.188
LGA    L      28      L      28         13.159
LGA    G      29      G      29         13.353
LGA    G      30      G      30          8.920
LGA    I      31      I      31          7.689
LGA    D      32      D      32         13.078
LGA    K      33      K      33         18.265
LGA    E      34      E      34         16.044
LGA    T      35      T      35         12.249
LGA    G      36      G      36         10.616
LGA    I      37      I      37         12.698
LGA    V      38      V      38         14.898
LGA    K      39      K      39         20.569
LGA    E      40      E      40         20.198
LGA    D      41      D      41         21.198
LGA    C      42      C      42         20.921
LGA    E      43      E      43         21.606
LGA    I      44      I      44         20.712
LGA    K      45      K      45         26.812
LGA    G      46      G      46         27.617
LGA    E      47      E      47         24.941
LGA    S      48      S      48         20.484
LGA    V      49      V      49         15.668
LGA    A      50      A      50         14.427
LGA    G      51      G      51          7.771
LGA    R      52      R      52          3.782
LGA    I      53      I      53          3.594
LGA    L      54      L      54          4.197
LGA    V      55      V      55          1.935
LGA    F      56      F      56          3.958
LGA    P      57      P      57          1.532
LGA    G      58      G      58          0.726
LGA    G      59      G      59          1.981
LGA    K      60      K      60          6.619
LGA    G      61      G      61          5.336
LGA    S      62      S      62          7.575
LGA    T      63      T      63         11.136
LGA    V      64      V      64         12.242
LGA    G      65      G      65          8.722
LGA    S      66      S      66         10.354
LGA    Y      67      Y      67          8.058
LGA    V      68      V      68          5.181
LGA    L      69      L      69          6.064
LGA    L      70      L      70          4.686
LGA    N      71      N      71          9.126
LGA    L      72      L      72         11.727
LGA    R      73      R      73         12.150
LGA    K      74      K      74         13.503
LGA    N      75      N      75         15.973
LGA    G      76      G      76         16.537
LGA    V      77      V      77         13.977
LGA    A      78      A      78          8.844
LGA    P      79      P      79          7.948
LGA    K      80      K      80          5.841
LGA    A      81      A      81          3.984
LGA    I      82      I      82          4.265
LGA    I      83      I      83          3.877
LGA    N      84      N      84          2.767
LGA    K      85      K      85          3.616
LGA    K      86      K      86          2.938
LGA    T      87      T      87          2.561
LGA    E      88      E      88          1.303
LGA    T      89      T      89          2.089
LGA    I      90      I      90          1.479
LGA    I      91      I      91          0.440
LGA    A      92      A      92          1.652
LGA    V      93      V      93          2.080
LGA    G      94      G      94          1.392
LGA    A      95      A      95          0.416
LGA    A      96      A      96          1.081
LGA    M      97      M      97          2.056
LGA    A      98      A      98          1.996
LGA    E      99      E      99          0.679
LGA    I     100      I     100          1.041
LGA    P     101      P     101          2.353
LGA    L     102      L     102          1.702
LGA    V     103      V     103          2.078
LGA    E     104      E     104          2.445
LGA    V     105      V     105          3.239
LGA    R     106      R     106          7.379
LGA    D     107      D     107         13.365
LGA    E     108      E     108         18.450
LGA    K     109      K     109         17.758
LGA    F     110      F     110         12.582
LGA    F     111      F     111         13.437
LGA    E     112      E     112         19.082
LGA    A     113      A     113         17.504
LGA    V     114      V     114         12.007
LGA    K     115      K     115         16.021
LGA    T     116      T     116         19.957
LGA    G     117      G     117         18.742
LGA    D     118      D     118         14.202
LGA    R     119      R     119          8.375
LGA    V     120      V     120          8.145
LGA    V     121      V     121         10.028
LGA    V     122      V     122         11.678
LGA    N     123      N     123         15.956
LGA    A     124      A     124         13.391
LGA    D     125      D     125         12.285
LGA    E     126      E     126         12.161
LGA    G     127      G     127         12.948
LGA    Y     128      Y     128         13.967
LGA    V     129      V     129         13.994
LGA    E     130      E     130         14.532
LGA    L     131      L     131         15.140
LGA    I     132      I     132         17.986
LGA    E     133      E     133         19.648

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  132    4.0     33    2.42    24.432    21.340     1.312

LGA_LOCAL      RMSD =  2.416  Number of atoms =   33  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.826  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 11.259  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.266335 * X  +  -0.699624 * Y  +   0.663018 * Z  +   2.206417
  Y_new =   0.754011 * X  +   0.277276 * Y  +   0.595471 * Z  +  -3.932292
  Z_new =  -0.600444 * X  +   0.658517 * Y  +   0.453676 * Z  +  -4.178465 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.967534   -2.174058  [ DEG:    55.4356   -124.5644 ]
  Theta =   0.644057    2.497536  [ DEG:    36.9017    143.0983 ]
  Phi   =   1.910340   -1.231253  [ DEG:   109.4544    -70.5456 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0357TS168_1                                  
REMARK     2: T0357.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0357TS168_1.T0357.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  132   4.0   33   2.42  21.340    11.26
REMARK  ---------------------------------------------------------- 
MOLECULE T0357TS168_1
PFRMAT TS
TARGET T0357
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      16.820 -18.315 -12.699  1.00 25.00           C
ATOM      2  CA  VAL     2      14.741 -15.778 -10.825  1.00 25.00           C
ATOM      3  CA  LYS     3      13.666 -13.752  -7.773  1.00 25.00           C
ATOM      4  CA  PHE     4      10.080 -14.726  -6.974  1.00 25.00           C
ATOM      5  CA  ALA     5       6.961 -12.746  -7.655  1.00 25.00           C
ATOM      6  CA  CYS     6       8.436  -9.476  -8.809  1.00 25.00           C
ATOM      7  CA  ARG     7       5.080  -8.292  -7.463  1.00 25.00           C
ATOM      8  CA  ALA     8       1.605  -7.113  -8.470  1.00 25.00           C
ATOM      9  CA  ILE     9      -1.350  -8.281 -10.472  1.00 25.00           C
ATOM     10  CA  THR    10      -3.531 -11.447 -10.558  1.00 25.00           C
ATOM     11  CA  ARG    11      -2.119 -15.002 -10.348  1.00 25.00           C
ATOM     12  CA  GLY    12      -3.073 -17.082  -7.254  1.00 25.00           C
ATOM     13  CA  ARG    13       0.527 -17.978  -6.550  1.00 25.00           C
ATOM     14  CA  ALA    14       3.618 -15.975  -5.398  1.00 25.00           C
ATOM     15  CA  GLU    15       1.867 -12.928  -6.935  1.00 25.00           C
ATOM     16  CA  GLY    16       0.252 -12.357  -3.602  1.00 25.00           C
ATOM     17  CA  GLU    17      -2.352 -10.517  -5.754  1.00 25.00           C
ATOM     18  CA  ALA    18      -1.590  -7.347  -3.798  1.00 25.00           C
ATOM     19  CA  LEU    19      -1.714  -4.557  -1.214  1.00 25.00           C
ATOM     20  CA  VAL    20      -3.422  -1.289  -0.551  1.00 25.00           C
ATOM     21  CA  THR    21      -5.620   1.755  -0.065  1.00 25.00           C
ATOM     22  CA  LYS    22      -9.328   2.019  -0.988  1.00 25.00           C
ATOM     23  CA  GLU    23     -13.004   1.913  -2.027  1.00 25.00           C
ATOM     24  CA  TYR    24     -13.001   3.788  -5.403  1.00 25.00           C
ATOM     25  CA  ILE    25     -11.293   0.596  -6.594  1.00 25.00           C
ATOM     26  CA  SER    26     -10.671  -3.144  -6.933  1.00 25.00           C
ATOM     27  CA  PHE    27     -11.460  -5.733  -4.290  1.00 25.00           C
ATOM     28  CA  LEU    28     -14.967  -4.250  -4.584  1.00 25.00           C
ATOM     29  CA  GLY    29     -15.375  -5.665  -8.074  1.00 25.00           C
ATOM     30  CA  GLY    30     -13.099  -8.542  -9.144  1.00 25.00           C
ATOM     31  CA  ILE    31      -9.440  -7.356  -9.355  1.00 25.00           C
ATOM     32  CA  ASP    32     -10.607  -5.464 -12.485  1.00 25.00           C
ATOM     33  CA  LYS    33      -9.418  -1.859 -12.116  1.00 25.00           C
ATOM     34  CA  GLU    34      -6.184  -3.478 -10.819  1.00 25.00           C
ATOM     35  CA  THR    35      -3.329  -4.141  -8.394  1.00 25.00           C
ATOM     36  CA  GLY    36      -3.957  -2.240  -5.151  1.00 25.00           C
ATOM     37  CA  ILE    37      -0.295  -1.335  -5.007  1.00 25.00           C
ATOM     38  CA  VAL    38       0.702   2.292  -5.124  1.00 25.00           C
ATOM     39  CA  LYS    39       0.784   5.003  -7.771  1.00 25.00           C
ATOM     40  CA  GLU    40      -1.327   6.877 -10.271  1.00 25.00           C
ATOM     41  CA  ASP    41      -0.058   6.023 -13.798  1.00 25.00           C
ATOM     42  CA  CYS    42       3.550   5.364 -12.661  1.00 25.00           C
ATOM     43  CA  GLU    43       4.360   6.988 -16.004  1.00 25.00           C
ATOM     44  CA  ILE    44       7.214   4.432 -15.975  1.00 25.00           C
ATOM     45  CA  LYS    45       9.004   6.911 -18.251  1.00 25.00           C
ATOM     46  CA  GLY    46      11.538   4.216 -19.010  1.00 25.00           C
ATOM     47  CA  GLU    47      13.168   4.965 -15.599  1.00 25.00           C
ATOM     48  CA  SER    48      12.313   2.337 -12.995  1.00 25.00           C
ATOM     49  CA  VAL    49      11.583   0.421  -9.786  1.00 25.00           C
ATOM     50  CA  ALA    50       8.783   3.054  -9.494  1.00 25.00           C
ATOM     51  CA  GLY    51       6.211   0.674 -10.993  1.00 25.00           C
ATOM     52  CA  ARG    52       2.453   0.422 -10.598  1.00 25.00           C
ATOM     53  CA  ILE    53      -1.167   0.710  -9.515  1.00 25.00           C
ATOM     54  CA  LEU    54      -3.847   2.326  -7.376  1.00 25.00           C
ATOM     55  CA  VAL    55      -3.755   4.463  -4.258  1.00 25.00           C
ATOM     56  CA  PHE    56      -4.002   6.849  -1.292  1.00 25.00           C
ATOM     57  CA  PRO    57      -5.448   6.884   2.196  1.00 25.00           C
ATOM     58  CA  GLY    58      -6.761   4.112   4.527  1.00 25.00           C
ATOM     59  CA  GLY    59      -6.416   0.346   4.782  1.00 25.00           C
ATOM     60  CA  LYS    60      -5.330  -3.145   5.962  1.00 25.00           C
ATOM     61  CA  GLY    61      -8.193  -5.695   6.238  1.00 25.00           C
ATOM     62  CA  SER    62      -9.384  -6.789   2.832  1.00 25.00           C
ATOM     63  CA  THR    63      -6.558  -4.806   1.170  1.00 25.00           C
ATOM     64  CA  VAL    64      -5.996  -6.682  -2.052  1.00 25.00           C
ATOM     65  CA  GLY    65      -7.210 -10.027  -0.634  1.00 25.00           C
ATOM     66  CA  SER    66      -3.682 -11.479  -0.975  1.00 25.00           C
ATOM     67  CA  TYR    67      -2.226  -8.428   0.825  1.00 25.00           C
ATOM     68  CA  VAL    68      -4.790  -8.833   3.640  1.00 25.00           C
ATOM     69  CA  LEU    69      -3.888 -12.541   3.962  1.00 25.00           C
ATOM     70  CA  LEU    70      -0.169 -11.645   4.135  1.00 25.00           C
ATOM     71  CA  ASN    71      -0.894  -9.046   6.852  1.00 25.00           C
ATOM     72  CA  LEU    72      -2.894 -11.641   8.835  1.00 25.00           C
ATOM     73  CA  ARG    73      -0.006 -14.137   8.529  1.00 25.00           C
ATOM     74  CA  LYS    74       2.459 -11.473   9.752  1.00 25.00           C
ATOM     75  CA  ASN    75       4.823 -14.309  10.588  1.00 25.00           C
ATOM     76  CA  GLY    76       8.095 -13.132   9.005  1.00 25.00           C
ATOM     77  CA  VAL    77       5.990 -13.345   5.805  1.00 25.00           C
ATOM     78  CA  ALA    78       5.510 -13.676   2.020  1.00 25.00           C
ATOM     79  CA  PRO    79       5.375 -10.727  -0.384  1.00 25.00           C
ATOM     80  CA  LYS    80       3.153  -8.759  -2.790  1.00 25.00           C
ATOM     81  CA  ALA    81       3.024  -4.904  -2.965  1.00 25.00           C
ATOM     82  CA  ILE    82       2.832  -3.391   0.537  1.00 25.00           C
ATOM     83  CA  ILE    83       1.405   0.050  -0.319  1.00 25.00           C
ATOM     84  CA  ASN    84      -0.435   3.378  -0.224  1.00 25.00           C
ATOM     85  CA  LYS    85      -1.079   4.701   3.283  1.00 25.00           C
ATOM     86  CA  LYS    86      -0.929   4.041   6.996  1.00 25.00           C
ATOM     87  CA  THR    87      -1.366   0.350   6.423  1.00 25.00           C
ATOM     88  CA  GLU    88      -2.518   0.148  10.093  1.00 25.00           C
ATOM     89  CA  THR    89       1.228   0.128  10.436  1.00 25.00           C
ATOM     90  CA  ILE    90       1.126  -3.656  11.015  1.00 25.00           C
ATOM     91  CA  ILE    91       0.593  -4.241   7.268  1.00 25.00           C
ATOM     92  CA  ALA    92       3.559  -1.955   6.465  1.00 25.00           C
ATOM     93  CA  VAL    93       5.740  -3.866   8.966  1.00 25.00           C
ATOM     94  CA  GLY    94       4.696  -7.190   7.376  1.00 25.00           C
ATOM     95  CA  ALA    95       5.556  -5.826   3.902  1.00 25.00           C
ATOM     96  CA  ALA    96       8.981  -4.677   5.174  1.00 25.00           C
ATOM     97  CA  MET    97       9.610  -8.141   6.681  1.00 25.00           C
ATOM     98  CA  ALA    98       8.645  -9.789   3.361  1.00 25.00           C
ATOM     99  CA  GLU    99       9.495  -7.124   0.790  1.00 25.00           C
ATOM    100  CA  ILE   100       7.867  -3.772  -0.046  1.00 25.00           C
ATOM    101  CA  PRO   101       7.590  -0.832   2.242  1.00 25.00           C
ATOM    102  CA  LEU   102       5.672   2.287   3.178  1.00 25.00           C
ATOM    103  CA  VAL   103       3.524   4.761   1.291  1.00 25.00           C
ATOM    104  CA  GLU   104       2.251   8.297   2.053  1.00 25.00           C
ATOM    105  CA  VAL   105       3.399  10.259   5.090  1.00 25.00           C
ATOM    106  CA  ARG   106       3.591   6.932   6.923  1.00 25.00           C
ATOM    107  CA  ASP   107       6.819   7.059   8.826  1.00 25.00           C
ATOM    108  CA  GLU   108       9.963   5.444   7.552  1.00 25.00           C
ATOM    109  CA  LYS   109      10.834   8.017   4.892  1.00 25.00           C
ATOM    110  CA  PHE   110       7.362   7.212   3.491  1.00 25.00           C
ATOM    111  CA  PHE   111       7.925   9.675   0.613  1.00 25.00           C
ATOM    112  CA  GLU   112      11.315   8.060  -0.138  1.00 25.00           C
ATOM    113  CA  ALA   113       9.688   4.593  -0.151  1.00 25.00           C
ATOM    114  CA  VAL   114       6.976   5.847  -2.547  1.00 25.00           C
ATOM    115  CA  LYS   115       9.658   7.313  -4.854  1.00 25.00           C
ATOM    116  CA  THR   116      13.014   5.627  -4.269  1.00 25.00           C
ATOM    117  CA  GLY   117      12.160   1.924  -4.602  1.00 25.00           C
ATOM    118  CA  ASP   118       8.568   0.893  -4.876  1.00 25.00           C
ATOM    119  CA  ARG   119       5.196   2.176  -6.049  1.00 25.00           C
ATOM    120  CA  VAL   120       4.474  -1.576  -6.447  1.00 25.00           C
ATOM    121  CA  VAL   121       6.964  -3.968  -4.752  1.00 25.00           C
ATOM    122  CA  VAL   122       8.168  -7.512  -4.082  1.00 25.00           C
ATOM    123  CA  ASN   123       9.362 -11.071  -3.487  1.00 25.00           C
ATOM    124  CA  ALA   124      12.583  -9.337  -2.561  1.00 25.00           C
ATOM    125  CA  ASP   125      15.890  -7.655  -3.365  1.00 25.00           C
ATOM    126  CA  GLU   126      16.059  -3.887  -2.881  1.00 25.00           C
ATOM    127  CA  GLY   127      12.321  -4.141  -3.451  1.00 25.00           C
ATOM    128  CA  TYR   128      11.071  -3.810  -7.018  1.00 25.00           C
ATOM    129  CA  VAL   129       8.272  -4.487  -9.570  1.00 25.00           C
ATOM    130  CA  GLU   130       4.793  -4.211 -11.082  1.00 25.00           C
ATOM    131  CA  LEU   131       1.492  -4.507 -12.969  1.00 25.00           C
ATOM    132  CA  ILE   132       1.489  -7.737 -14.940  1.00 25.00           C
ATOM    133  CA  GLU   133       1.184  -9.119 -18.500  1.00 25.00           C
ATOM    134  CA  LEU   134       1.202 -10.247 -22.134  1.00 25.00           C
ATOM    135  CA  GLU   135       1.107 -10.947 -25.861  1.00 25.00           C
ATOM    136  CA  HIS   136       4.017 -10.332 -28.130  1.00 25.00           C
ATOM    137  CA  HIS   137       4.410 -14.097 -27.926  1.00 25.00           C
ATOM    138  CA  HIS   138       8.117 -14.650 -28.293  1.00 25.00           C
ATOM    139  CA  HIS   139       7.733 -18.450 -28.891  1.00 25.00           C
ATOM    140  CA  HIS   140      10.538 -18.062 -31.383  1.00 25.00           C
ATOM    141  CA  HIS   141       9.804 -18.641 -35.052  1.00 25.00           C
TER
END
