
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  132 , name T0357TS168_2
# Molecule2: number of CA atoms  132 ( 2030),  selected  132 , name T0357.pdb
# PARAMETERS: T0357TS168_2.T0357.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    56        51 - 106         4.95     9.84
  LONGEST_CONTINUOUS_SEGMENT:    56        52 - 107         4.98     9.80
  LCS_AVERAGE:     30.26

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        10 - 22          1.74    14.27
  LONGEST_CONTINUOUS_SEGMENT:    13        89 - 101         1.75    10.82
  LONGEST_CONTINUOUS_SEGMENT:    13       102 - 114         1.88    11.80
  LONGEST_CONTINUOUS_SEGMENT:    13       103 - 115         1.88    10.94
  LCS_AVERAGE:      7.48

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    10        65 - 74          0.46    24.77
  LONGEST_CONTINUOUS_SEGMENT:    10        89 - 98          0.27    11.24
  LCS_AVERAGE:      3.97

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     V       2     V       2      3    7   13     3    3    3    4    7    9   10   11   11   13   15   17   18   20   23   28   31   33   44   51 
LCS_GDT     K       3     K       3      4    7   13     4    4    4    6    7    9   10   11   11   13   15   17   18   20   24   31   37   44   63   68 
LCS_GDT     F       4     F       4      4    7   13     4    4    4    6    6    7   10   11   11   13   15   17   18   24   25   28   31   57   63   68 
LCS_GDT     A       5     A       5      4    7   13     4    5    5    6    7    9   10   11   11   13   15   17   22   29   32   37   39   55   63   68 
LCS_GDT     C       6     C       6      4    7   13     3    5    5    6    8    9   10   11   11   13   20   22   25   29   32   37   46   56   63   74 
LCS_GDT     R       7     R       7      4    7   17     4    5    5    6    8    9   10   11   11   13   15   17   25   29   32   37   39   55   68   80 
LCS_GDT     A       8     A       8      4    7   19     3    5    5    6    8    9   10   11   11   18   24   44   54   63   72   81   89   91   96  101 
LCS_GDT     I       9     I       9      3    7   19     3    3    5    6    9   10   13   20   30   39   50   51   59   64   72   81   89   91   98  101 
LCS_GDT     T      10     T      10      4   13   19     2    4    5    6   10   20   23   28   37   42   50   56   63   65   78   82   87   94   98  104 
LCS_GDT     R      11     R      11      4   13   19     1    4    6   13   18   24   28   31   38   44   60   62   67   75   84   89   93   96  100  104 
LCS_GDT     G      12     G      12      6   13   20     2    6   11   13   19   24   28   32   43   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     R      13     R      13      6   13   21     2    6   11   13   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     A      14     A      14      6   13   21     3    8   12   14   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     E      15     E      15      6   13   21     3    6   11   17   20   24   28   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     G      16     G      16      6   13   21     3    6   11   17   20   24   28   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     E      17     E      17      6   13   21     3    6   11   17   20   24   28   34   43   55   60   62   66   75   78   85   93   96  100  104 
LCS_GDT     A      18     A      18      4   13   21     3    4    6   13   19   24   28   32   38   46   59   62   66   68   70   82   87   91   99  104 
LCS_GDT     L      19     L      19      4   13   21     3    5   11   14   20   24   28   32   43   55   60   62   66   75   78   85   93   96  100  104 
LCS_GDT     V      20     V      20      4   13   21     3    6   11   17   20   24   28   34   43   55   60   63   71   78   84   89   93   96  100  104 
LCS_GDT     T      21     T      21      4   13   21     3    4    9   17   20   22   28   31   43   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     K      22     K      22      3   13   21     3    4    8   13   18   22   28   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     E      23     E      23      3    8   21     3    3    6   12   15   21   29   36   44   55   60   62   74   80   84   89   93   96  100  104 
LCS_GDT     Y      24     Y      24      3    8   21     3    3    7   10   15   21   24   32   37   40   44   52   65   71   79   84   92   96  100  104 
LCS_GDT     I      25     I      25      3    8   21     3   12   12   14   15   21   25   35   44   50   55   65   74   80   84   89   93   96  100  104 
LCS_GDT     S      26     S      26      3    8   21     3    5    5    6   11   14   21   32   37   42   51   59   70   80   84   89   93   96  100  104 
LCS_GDT     F      27     F      27      3    8   21     3    3    4   11   12   15   23   30   36   42   52   65   74   80   84   89   93   96  100  104 
LCS_GDT     L      28     L      28      3    8   21     3    3    4    7   13   16   22   26   34   45   49   59   70   74   82   88   92   96  100  104 
LCS_GDT     G      29     G      29      5    7   21     3    3    5    7   11   15   21   30   36   45   52   65   71   80   82   89   93   96  100  104 
LCS_GDT     G      30     G      30      5    7   21     3    3    5    7   11   15   21   26   36   45   51   63   74   80   84   89   93   96  100  104 
LCS_GDT     I      31     I      31      5    7   21     3    9   11   14   19   28   36   38   46   50   56   65   74   80   84   89   93   96  100  104 
LCS_GDT     D      32     D      32      5    7   21     3    4    8   12   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     K      33     K      33      5    7   21     3    4    7   12   19   28   36   38   46   50   56   65   74   80   84   89   93   96  100  104 
LCS_GDT     E      34     E      34      4    7   21     3    3    5    7    7   19   25   36   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     T      35     T      35      3    7   21     0    3    5    7    7    7    9   12   16   19   27   47   65   76   80   89   93   96  100  104 
LCS_GDT     G      36     G      36      3    6   21     3    3    4    4    7    8   10   13   21   37   53   59   65   76   82   89   93   96  100  104 
LCS_GDT     I      37     I      37      4    6   21     3    4    4    6    7    8   10   13   16   19   22   27   32   51   68   82   93   95   99  103 
LCS_GDT     V      38     V      38      4    6   21     3    4    4    6    6    7   13   22   33   46   55   60   67   71   82   87   93   96  100  104 
LCS_GDT     K      39     K      39      4    6   21     3    4    4    6    6    7   13   18   21   27   36   48   58   63   74   79   84   90   95  101 
LCS_GDT     E      40     E      40      4    6   21     3    4    4    7   10   12   14   17   23   30   38   48   55   63   74   79   84   90   95  101 
LCS_GDT     D      41     D      41      3    6   21     3    3    4    4    5    6   13   17   17   18   20   27   43   55   64   73   78   86   89   95 
LCS_GDT     C      42     C      42      3    6   15     3    3    4    6    7    7    9   10   12   13   19   19   20   24   58   65   70   76   81   88 
LCS_GDT     E      43     E      43      3    6   15     3    3    4    6    7    7    9   10   12   13   15   18   38   50   62   67   72   77   85   89 
LCS_GDT     I      44     I      44      3    6   15     3    3    3    6    7    7   13   19   24   33   40   50   58   68   75   81   86   93   95  101 
LCS_GDT     K      45     K      45      4    6   15     3    3    4    4    6   12   13   17   17   18   20   24   29   41   49   64   77   83   87   92 
LCS_GDT     G      46     G      46      4    6   15     3    3    4    6   10   12   13   17   17   17   20   24   30   37   41   57   64   73   84   88 
LCS_GDT     E      47     E      47      4    6   15     3    3    4    6   10   12   14   17   17   18   26   31   37   52   59   64   71   79   85   92 
LCS_GDT     S      48     S      48      4    9   21     3    3    4    6    8   10   12   13   15   17   22   29   42   52   61   67   70   77   87   91 
LCS_GDT     V      49     V      49      4    9   23     3    4    6    7    9   10   12   13   15   25   38   49   55   63   68   75   80   87   91   98 
LCS_GDT     A      50     A      50      4    9   23     3    4    6    7    9   10   12   18   26   32   41   49   60   67   75   77   85   89   94   99 
LCS_GDT     G      51     G      51      4    9   56     3    4    6    7   13   16   21   33   43   49   56   65   74   80   84   89   93   96  100  104 
LCS_GDT     R      52     R      52      4   10   56     3    5    6   13   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     I      53     I      53      4   10   56     3    5   11   15   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     L      54     L      54      4   10   56     3    4    6   10   19   28   36   38   46   50   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     V      55     V      55      4   10   56     3    9   12   15   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     F      56     F      56      4   10   56     3    4   12   15   18   25   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     P      57     P      57      4   10   56     3    6   11   17   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     G      58     G      58      4   10   56     3    6   11   17   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     G      59     G      59      3   10   56     0    3    6   10   19   27   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     K      60     K      60      3   10   56     3    3    5    9   12   21   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     G      61     G      61      3   10   56     3    4    7   11   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     S      62     S      62      3    8   56     3    3    8   13   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     T      63     T      63      3    4   56     3    3    3    6    9   11   17   28   37   46   56   65   71   80   84   89   93   96  100  104 
LCS_GDT     V      64     V      64      3   12   56     3    3    6   10   12   13   17   21   29   34   42   58   66   71   78   86   92   96  100  104 
LCS_GDT     G      65     G      65     10   12   56     9   10   10   11   13   16   21   28   40   48   56   65   74   80   84   89   93   96  100  104 
LCS_GDT     S      66     S      66     10   12   56     4   10   10   11   12   13   18   22   26   40   50   58   67   72   82   86   92   96  100  104 
LCS_GDT     Y      67     Y      67     10   12   56     9   10   10   11   12   16   18   23   29   35   43   58   67   70   80   88   93   96  100  104 
LCS_GDT     V      68     V      68     10   12   56     9   10   10   14   17   22   29   38   46   50   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     L      69     L      69     10   12   56     9   10   10   13   19   28   36   38   46   50   59   65   74   80   84   89   93   96  100  104 
LCS_GDT     L      70     L      70     10   12   56     9   10   11   14   17   22   29   37   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     N      71     N      71     10   12   56     9   10   10   11   13   21   24   32   44   55   60   65   72   76   84   89   93   96  100  104 
LCS_GDT     L      72     L      72     10   12   56     9   10   10   17   20   22   28   36   44   55   60   65   72   77   84   89   93   96  100  104 
LCS_GDT     R      73     R      73     10   12   56     9   10   10   17   20   22   28   36   44   55   60   65   73   80   84   89   93   96  100  104 
LCS_GDT     K      74     K      74     10   12   56     9   10   10   11   13   21   25   33   44   55   60   62   66   75   78   85   93   96  100  104 
LCS_GDT     N      75     N      75      4   12   56     3    6   11   13   18   24   28   30   38   49   55   59   66   68   76   84   91   95   99  100 
LCS_GDT     G      76     G      76      4   12   56     2    4    9   13   19   24   28   35   44   55   60   62   66   72   79   87   93   96  100  104 
LCS_GDT     V      77     V      77      4    5   56     3    3    4    5   10   23   28   30   43   50   60   62   66   72   79   88   93   96  100  104 
LCS_GDT     A      78     A      78      4    5   56     3    3    4    5   11   15   22   25   37   48   55   65   73   80   84   89   93   96  100  104 
LCS_GDT     P      79     P      79      4    7   56     3    3    6   10   17   21   24   35   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     K      80     K      80      4    9   56     3    5   10   17   20   21   28   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     A      81     A      81      4    9   56     3    8   10   17   20   22   29   36   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     I      82     I      82      4    9   56     3    9   12   17   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     I      83     I      83      4    9   56     4    9   12   17   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     N      84     N      84      4    9   56     2    4    9   13   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     K      85     K      85      4    9   56     3    6   10   17   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     K      86     K      86      4    9   56     3    6   10   17   20   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     T      87     T      87      4    9   56     3    5   10   17   20   24   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     E      88     E      88      4   11   56     3    4   10   17   20   22   28   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     T      89     T      89     10   13   56    11   12   12   14   17   21   29   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     I      90     I      90     10   13   56    11   12   12   14   17   21   29   36   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     I      91     I      91     10   13   56    11   12   12   14   17   21   29   37   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     A      92     A      92     10   13   56    11   12   12   14   17   21   29   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     V      93     V      93     10   13   56    11   12   12   14   17   21   29   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     G      94     G      94     10   13   56    11   12   12   14   17   21   29   37   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     A      95     A      95     10   13   56    11   12   12   14   17   21   29   37   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     A      96     A      96     10   13   56    11   12   12   14   17   21   29   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     M      97     M      97     10   13   56    11   12   12   14   17   21   29   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     A      98     A      98     10   13   56    11   12   12   14   17   21   29   36   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     E      99     E      99      6   13   56     4    5    8   13   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     I     100     I     100      6   13   56     4    5    9   12   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     P     101     P     101      6   13   56     4    5    6   10   19   28   36   38   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     L     102     L     102      6   13   56     4    5    6    9   12   16   21   29   37   47   56   65   74   80   84   89   93   96  100  104 
LCS_GDT     V     103     V     103      4   13   56     3    4    7   10   15   19   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     E     104     E     104      4   13   56     3    4    7   10   15   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     V     105     V     105      4   13   56     3    4    7   10   18   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     R     106     R     106      4   13   56     3    4    5   10   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     D     107     D     107      8   13   56     3    7   12   15   17   20   31   38   41   49   56   65   74   80   84   89   93   96  100  104 
LCS_GDT     E     108     E     108      8   13   50     4    9   12   15   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     K     109     K     109      8   13   50     5    9   12   15   19   28   36   38   46   50   57   65   74   80   83   89   93   96  100  104 
LCS_GDT     F     110     F     110      8   13   50     5    9   12   15   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     F     111     F     111      8   13   50     5    9   12   15   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     E     112     E     112      8   13   50     5    9   12   15   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     A     113     A     113      8   13   50     5    9   12   15   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     V     114     V     114      8   13   50     4    9   12   15   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     K     115     K     115      8   13   50     3    4    8   12   19   28   36   38   46   50   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     T     116     T     116      4   10   50     3    4    5    8    9   11   14   24   35   49   55   62   67   74   82   87   93   96  100  104 
LCS_GDT     G     117     G     117      4    9   50     3    4    4    7    9   10   18   24   32   43   51   57   65   71   78   82   90   93   99  102 
LCS_GDT     D     118     D     118      4    9   50     3    4    5    7    8   15   17   24   34   43   51   56   68   75   78   84   90   96   99  104 
LCS_GDT     R     119     R     119      4    9   50     3    4    5    7   10   15   18   26   34   44   54   64   70   75   81   89   93   96  100  104 
LCS_GDT     V     120     V     120      4    9   50     3    3    5    8   10   15   22   29   40   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     V     121     V     121      4    9   50     3    3    5    8   11   15   21   26   39   48   57   65   74   80   84   89   93   96  100  104 
LCS_GDT     V     122     V     122      4    9   50    11   12   12   14   18   24   29   36   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     N     123     N     123      4    9   50     3    4    7   14   19   24   29   36   44   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     A     124     A     124      3    9   50     0    3    5    6    9   15   23   30   39   46   60   62   67   75   84   89   93   96  100  104 
LCS_GDT     D     125     D     125      3    8   50     3    3    5    7   15   21   29   36   44   55   60   64   73   79   84   89   93   96  100  104 
LCS_GDT     E     126     E     126      4    8   50     3    4    7    8   11   21   29   36   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     G     127     G     127      4    8   50     3    4    7    8   11   21   29   36   46   55   60   65   74   80   84   89   93   96  100  104 
LCS_GDT     Y     128     Y     128      5    8   50     3    4    5    7   11   14   21   26   31   40   51   62   70   80   84   89   93   96  100  104 
LCS_GDT     V     129     V     129      5    8   37     3    4    5    6    9   18   22   25   29   39   42   49   55   65   71   81   87   93   98  103 
LCS_GDT     E     130     E     130      5    8   14     3    4    5    6    8    9    9   10   15   17   26   31   37   40   44   53   66   74   82   92 
LCS_GDT     L     131     L     131      5    8   12     3    4    5    6    8    9   10   13   15   15   18   18   21   24   25   30   31   36   43   56 
LCS_GDT     I     132     I     132      5    8   12     3    4    5    6    8    9   12   12   14   14   16   18   21   22   25   27   28   32   35   43 
LCS_GDT     E     133     E     133      4    8   12     3    3    4    6    8    9    9   10   11   12   13   17   17   18   23   25   28   32   35   38 
LCS_AVERAGE  LCS_A:  13.90  (   3.97    7.48   30.26 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     12     17     20     28     36     38     46     55     60     65     74     80     84     89     93     96    100    104 
GDT PERCENT_CA   8.33   9.09   9.09  12.88  15.15  21.21  27.27  28.79  34.85  41.67  45.45  49.24  56.06  60.61  63.64  67.42  70.45  72.73  75.76  78.79
GDT RMS_LOCAL    0.32   0.45   0.45   1.45   1.59   2.24   2.56   2.64   3.30   3.67   3.87   4.21   4.59   4.82   5.05   5.24   5.45   5.62   5.82   6.04
GDT RMS_ALL_CA  11.43  11.60  11.60  11.96  12.04  10.11  10.10  10.09  10.13  11.35  11.36  10.16  10.06   9.97  10.13  10.13  10.14  10.22  10.06  10.13

#      Molecule1      Molecule2       DISTANCE
LGA    V       2      V       2         26.808
LGA    K       3      K       3         20.194
LGA    F       4      F       4         18.092
LGA    A       5      A       5         17.890
LGA    C       6      C       6         16.668
LGA    R       7      R       7         15.594
LGA    A       8      A       8         10.749
LGA    I       9      I       9         11.166
LGA    T      10      T      10         12.011
LGA    R      11      R      11          9.300
LGA    G      12      G      12          6.413
LGA    R      13      R      13          2.324
LGA    A      14      A      14          1.894
LGA    E      15      E      15          6.411
LGA    G      16      G      16          7.478
LGA    E      17      E      17         11.075
LGA    A      18      A      18         12.317
LGA    L      19      L      19         10.575
LGA    V      20      V      20          8.317
LGA    T      21      T      21          6.234
LGA    K      22      K      22          7.378
LGA    E      23      E      23          8.272
LGA    Y      24      Y      24         11.600
LGA    I      25      I      25          6.635
LGA    S      26      S      26          7.238
LGA    F      27      F      27          5.740
LGA    L      28      L      28          7.538
LGA    G      29      G      29          6.225
LGA    G      30      G      30          6.231
LGA    I      31      I      31          2.851
LGA    D      32      D      32          0.726
LGA    K      33      K      33          0.959
LGA    E      34      E      34          6.194
LGA    T      35      T      35          9.530
LGA    G      36      G      36          8.559
LGA    I      37      I      37          9.907
LGA    V      38      V      38          7.521
LGA    K      39      K      39         12.773
LGA    E      40      E      40         14.208
LGA    D      41      D      41         17.962
LGA    C      42      C      42         19.738
LGA    E      43      E      43         20.444
LGA    I      44      I      44         15.005
LGA    K      45      K      45         19.315
LGA    G      46      G      46         21.289
LGA    E      47      E      47         18.050
LGA    S      48      S      48         15.945
LGA    V      49      V      49         12.523
LGA    A      50      A      50         11.856
LGA    G      51      G      51          5.431
LGA    R      52      R      52          1.987
LGA    I      53      I      53          1.176
LGA    L      54      L      54          1.776
LGA    V      55      V      55          2.973
LGA    F      56      F      56          3.429
LGA    P      57      P      57          2.884
LGA    G      58      G      58          2.649
LGA    G      59      G      59          3.290
LGA    K      60      K      60          3.537
LGA    G      61      G      61          2.861
LGA    S      62      S      62          0.801
LGA    T      63      T      63          6.175
LGA    V      64      V      64          9.038
LGA    G      65      G      65          5.463
LGA    S      66      S      66          8.078
LGA    Y      67      Y      67          9.190
LGA    V      68      V      68          6.002
LGA    L      69      L      69          2.327
LGA    L      70      L      70          6.150
LGA    N      71      N      71         11.447
LGA    L      72      L      72         11.188
LGA    R      73      R      73          9.758
LGA    K      74      K      74         14.288
LGA    N      75      N      75         16.768
LGA    G      76      G      76         13.754
LGA    V      77      V      77         12.434
LGA    A      78      A      78          8.177
LGA    P      79      P      79          6.225
LGA    K      80      K      80          7.091
LGA    A      81      A      81          4.948
LGA    I      82      I      82          3.107
LGA    I      83      I      83          3.476
LGA    N      84      N      84          2.574
LGA    K      85      K      85          2.559
LGA    K      86      K      86          2.796
LGA    T      87      T      87          4.666
LGA    E      88      E      88          6.039
LGA    T      89      T      89          9.103
LGA    I      90      I      90          7.232
LGA    I      91      I      91          5.687
LGA    A      92      A      92          7.858
LGA    V      93      V      93          8.850
LGA    G      94      G      94          6.739
LGA    A      95      A      95          5.915
LGA    A      96      A      96          8.413
LGA    M      97      M      97          9.078
LGA    A      98      A      98          7.126
LGA    E      99      E      99          2.895
LGA    I     100      I     100          3.054
LGA    P     101      P     101          3.264
LGA    L     102      L     102          6.154
LGA    V     103      V     103          3.474
LGA    E     104      E     104          3.384
LGA    V     105      V     105          2.781
LGA    R     106      R     106          2.484
LGA    D     107      D     107          3.852
LGA    E     108      E     108          1.638
LGA    K     109      K     109          2.346
LGA    F     110      F     110          2.506
LGA    F     111      F     111          1.819
LGA    E     112      E     112          2.028
LGA    A     113      A     113          2.885
LGA    V     114      V     114          2.100
LGA    K     115      K     115          2.431
LGA    T     116      T     116          6.477
LGA    G     117      G     117          9.363
LGA    D     118      D     118         10.415
LGA    R     119      R     119          9.783
LGA    V     120      V     120          7.291
LGA    V     121      V     121          7.266
LGA    V     122      V     122          4.814
LGA    N     123      N     123          6.709
LGA    A     124      A     124          9.693
LGA    D     125      D     125          9.445
LGA    E     126      E     126          6.448
LGA    G     127      G     127          5.846
LGA    Y     128      Y     128          6.814
LGA    V     129      V     129          8.891
LGA    E     130      E     130         14.281
LGA    L     131      L     131         19.179
LGA    I     132      I     132         24.742
LGA    E     133      E     133         30.773

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  132    4.0     38    2.64    29.545    24.361     1.388

LGA_LOCAL      RMSD =  2.638  Number of atoms =   38  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.090  Number of atoms =  132 
Std_ALL_ATOMS  RMSD =  9.564  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.787750 * X  +  -0.422233 * Y  +  -0.448519 * Z  +   2.499970
  Y_new =  -0.498084 * X  +   0.008194 * Y  +   0.867090 * Z  +  -1.252977
  Z_new =  -0.362439 * X  +   0.906450 * Y  +  -0.216762 * Z  +  -0.891045 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.805521   -1.336071  [ DEG:   103.4487    -76.5513 ]
  Theta =   0.370883    2.770710  [ DEG:    21.2500    158.7500 ]
  Phi   =  -2.577770    0.563822  [ DEG:  -147.6954     32.3046 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0357TS168_2                                  
REMARK     2: T0357.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0357TS168_2.T0357.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  132   4.0   38   2.64  24.361     9.56
REMARK  ---------------------------------------------------------- 
MOLECULE T0357TS168_2
PFRMAT TS
TARGET T0357
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      23.100  -7.291  -4.692  1.00 25.00           C
ATOM      2  CA  VAL     2      19.573  -6.450  -3.607  1.00 25.00           C
ATOM      3  CA  LYS     3      17.811  -3.193  -2.832  1.00 25.00           C
ATOM      4  CA  PHE     4      14.317  -2.400  -1.537  1.00 25.00           C
ATOM      5  CA  ALA     5      11.312  -4.590  -2.449  1.00 25.00           C
ATOM      6  CA  CYS     6       7.673  -5.324  -3.257  1.00 25.00           C
ATOM      7  CA  ARG     7       4.763  -3.101  -4.416  1.00 25.00           C
ATOM      8  CA  ALA     8       3.272  -0.073  -2.630  1.00 25.00           C
ATOM      9  CA  ILE     9       5.316   2.936  -3.733  1.00 25.00           C
ATOM     10  CA  THR    10       6.584   6.366  -4.598  1.00 25.00           C
ATOM     11  CA  ARG    11       9.996   4.955  -5.341  1.00 25.00           C
ATOM     12  CA  GLY    12      13.467   3.595  -6.104  1.00 25.00           C
ATOM     13  CA  ARG    13      11.745   0.285  -6.850  1.00 25.00           C
ATOM     14  CA  ALA    14       9.052  -2.313  -7.174  1.00 25.00           C
ATOM     15  CA  GLU    15       7.155  -5.484  -8.241  1.00 25.00           C
ATOM     16  CA  GLY    16       3.522  -6.552  -7.674  1.00 25.00           C
ATOM     17  CA  GLU    17       0.336  -8.682  -7.328  1.00 25.00           C
ATOM     18  CA  ALA    18      -3.175  -8.446  -5.962  1.00 25.00           C
ATOM     19  CA  LEU    19      -5.316  -7.202  -2.999  1.00 25.00           C
ATOM     20  CA  VAL    20      -6.783  -3.718  -2.349  1.00 25.00           C
ATOM     21  CA  THR    21      -9.552  -2.243  -0.299  1.00 25.00           C
ATOM     22  CA  LYS    22     -12.498  -2.866  -2.692  1.00 25.00           C
ATOM     23  CA  GLU    23     -15.375  -5.286  -2.119  1.00 25.00           C
ATOM     24  CA  TYR    24     -13.357  -8.275  -3.333  1.00 25.00           C
ATOM     25  CA  ILE    25     -11.043  -8.205  -0.387  1.00 25.00           C
ATOM     26  CA  SER    26     -11.955  -9.463   3.065  1.00 25.00           C
ATOM     27  CA  PHE    27      -8.818 -11.660   3.019  1.00 25.00           C
ATOM     28  CA  LEU    28      -7.666 -15.048   1.679  1.00 25.00           C
ATOM     29  CA  GLY    29     -10.799 -15.516  -0.528  1.00 25.00           C
ATOM     30  CA  GLY    30     -12.673 -13.984  -3.473  1.00 25.00           C
ATOM     31  CA  ILE    31      -9.564 -11.796  -3.662  1.00 25.00           C
ATOM     32  CA  ASP    32      -6.384 -13.844  -3.593  1.00 25.00           C
ATOM     33  CA  LYS    33      -3.305 -15.782  -2.434  1.00 25.00           C
ATOM     34  CA  GLU    34      -1.179 -13.032  -0.927  1.00 25.00           C
ATOM     35  CA  THR    35       0.067  -9.703  -2.328  1.00 25.00           C
ATOM     36  CA  GLY    36       0.731  -6.073  -3.432  1.00 25.00           C
ATOM     37  CA  ILE    37      -2.457  -3.973  -3.833  1.00 25.00           C
ATOM     38  CA  VAL    38      -4.338  -3.109  -7.037  1.00 25.00           C
ATOM     39  CA  LYS    39      -1.774  -4.563  -9.503  1.00 25.00           C
ATOM     40  CA  GLU    40      -2.649  -6.457 -12.684  1.00 25.00           C
ATOM     41  CA  ASP    41      -0.615  -9.377 -14.051  1.00 25.00           C
ATOM     42  CA  CYS    42       2.546  -7.734 -12.799  1.00 25.00           C
ATOM     43  CA  GLU    43       3.919  -6.821 -16.181  1.00 25.00           C
ATOM     44  CA  ILE    44       2.289  -3.458 -16.812  1.00 25.00           C
ATOM     45  CA  LYS    45       2.858  -2.810 -20.483  1.00 25.00           C
ATOM     46  CA  GLY    46       6.543  -1.755 -20.197  1.00 25.00           C
ATOM     47  CA  GLU    47       5.462   1.818 -19.303  1.00 25.00           C
ATOM     48  CA  SER    48       2.627   3.418 -17.336  1.00 25.00           C
ATOM     49  CA  VAL    49       2.315   3.555 -13.519  1.00 25.00           C
ATOM     50  CA  ALA    50       5.274   1.163 -13.742  1.00 25.00           C
ATOM     51  CA  GLY    51       5.891  -1.891 -11.609  1.00 25.00           C
ATOM     52  CA  ARG    52       2.207  -1.389 -10.594  1.00 25.00           C
ATOM     53  CA  ILE    53       0.912  -1.025  -7.043  1.00 25.00           C
ATOM     54  CA  LEU    54      -0.711   1.255  -4.461  1.00 25.00           C
ATOM     55  CA  VAL    55      -4.414   0.649  -3.577  1.00 25.00           C
ATOM     56  CA  PHE    56      -7.819   1.992  -2.518  1.00 25.00           C
ATOM     57  CA  PRO    57      -7.757   5.484  -1.053  1.00 25.00           C
ATOM     58  CA  GLY    58      -7.868   5.315   2.731  1.00 25.00           C
ATOM     59  CA  GLY    59      -6.797   1.678   2.754  1.00 25.00           C
ATOM     60  CA  LYS    60      -8.409   0.880   6.081  1.00 25.00           C
ATOM     61  CA  GLY    61      -8.878  -1.032   9.347  1.00 25.00           C
ATOM     62  CA  SER    62      -6.665  -3.973  10.190  1.00 25.00           C
ATOM     63  CA  THR    63      -5.801  -4.588   6.487  1.00 25.00           C
ATOM     64  CA  VAL    64      -5.391  -3.363   2.923  1.00 25.00           C
ATOM     65  CA  GLY    65      -4.620  -7.009   2.040  1.00 25.00           C
ATOM     66  CA  SER    66      -1.072  -6.028   0.982  1.00 25.00           C
ATOM     67  CA  TYR    67      -0.586  -4.140   4.279  1.00 25.00           C
ATOM     68  CA  VAL    68      -1.812  -7.193   6.238  1.00 25.00           C
ATOM     69  CA  LEU    69       0.618  -9.438   4.307  1.00 25.00           C
ATOM     70  CA  LEU    70       3.490  -7.021   5.066  1.00 25.00           C
ATOM     71  CA  ASN    71       2.553  -7.034   8.778  1.00 25.00           C
ATOM     72  CA  LEU    72       2.496 -10.863   8.776  1.00 25.00           C
ATOM     73  CA  ARG    73       5.944 -10.938   7.111  1.00 25.00           C
ATOM     74  CA  LYS    74       7.294  -8.500   9.738  1.00 25.00           C
ATOM     75  CA  ASN    75      10.657  -9.846   8.458  1.00 25.00           C
ATOM     76  CA  GLY    76      10.583 -11.734   5.109  1.00 25.00           C
ATOM     77  CA  VAL    77       8.380 -10.013   2.578  1.00 25.00           C
ATOM     78  CA  ALA    78       9.030  -9.734  -1.188  1.00 25.00           C
ATOM     79  CA  PRO    79       5.621  -9.912  -2.791  1.00 25.00           C
ATOM     80  CA  LYS    80       4.284  -7.958   0.164  1.00 25.00           C
ATOM     81  CA  ALA    81       3.622  -4.201   0.374  1.00 25.00           C
ATOM     82  CA  ILE    82       0.418  -2.161  -0.155  1.00 25.00           C
ATOM     83  CA  ILE    83      -0.934   1.397   0.275  1.00 25.00           C
ATOM     84  CA  ASN    84      -0.702   5.113  -0.518  1.00 25.00           C
ATOM     85  CA  LYS    85      -3.303   7.139   1.411  1.00 25.00           C
ATOM     86  CA  LYS    86      -4.024   8.025   5.100  1.00 25.00           C
ATOM     87  CA  THR    87      -0.640   7.429   6.770  1.00 25.00           C
ATOM     88  CA  GLU    88      -1.840   6.144  10.163  1.00 25.00           C
ATOM     89  CA  THR    89      -4.810   4.273   8.697  1.00 25.00           C
ATOM     90  CA  ILE    90      -4.050   0.617   9.550  1.00 25.00           C
ATOM     91  CA  ILE    91      -3.295  -0.111   5.866  1.00 25.00           C
ATOM     92  CA  ALA    92      -0.956   2.919   5.721  1.00 25.00           C
ATOM     93  CA  VAL    93       0.838   1.715   8.884  1.00 25.00           C
ATOM     94  CA  GLY    94       1.237  -1.776   7.359  1.00 25.00           C
ATOM     95  CA  ALA    95       2.665  -0.239   4.155  1.00 25.00           C
ATOM     96  CA  ALA    96       5.131   1.838   6.221  1.00 25.00           C
ATOM     97  CA  MET    97       6.207  -1.300   8.136  1.00 25.00           C
ATOM     98  CA  ALA    98       6.729  -3.167   4.834  1.00 25.00           C
ATOM     99  CA  GLU    99       8.482  -4.392   1.689  1.00 25.00           C
ATOM    100  CA  ILE   100       7.739  -1.367  -0.441  1.00 25.00           C
ATOM    101  CA  PRO   101       9.949   1.281  -1.937  1.00 25.00           C
ATOM    102  CA  LEU   102       9.053   4.874  -0.877  1.00 25.00           C
ATOM    103  CA  VAL   103       8.158   6.616   2.335  1.00 25.00           C
ATOM    104  CA  GLU   104       5.627   8.578   4.379  1.00 25.00           C
ATOM    105  CA  VAL   105       2.766  11.085   4.722  1.00 25.00           C
ATOM    106  CA  ARG   106      -0.602  11.333   3.124  1.00 25.00           C
ATOM    107  CA  ASP   107      -3.425  13.736   3.854  1.00 25.00           C
ATOM    108  CA  GLU   108      -4.413  12.992   0.281  1.00 25.00           C
ATOM    109  CA  LYS   109      -1.709  14.346  -2.077  1.00 25.00           C
ATOM    110  CA  PHE   110      -0.356  10.791  -2.518  1.00 25.00           C
ATOM    111  CA  PHE   111      -3.883   9.518  -3.292  1.00 25.00           C
ATOM    112  CA  GLU   112      -4.351  12.309  -5.874  1.00 25.00           C
ATOM    113  CA  ALA   113      -0.999  11.406  -7.493  1.00 25.00           C
ATOM    114  CA  VAL   114      -2.035   7.722  -7.640  1.00 25.00           C
ATOM    115  CA  LYS   115      -5.365   8.697  -9.259  1.00 25.00           C
ATOM    116  CA  THR   116      -9.065   7.862  -9.279  1.00 25.00           C
ATOM    117  CA  GLY   117      -8.069   4.553  -7.689  1.00 25.00           C
ATOM    118  CA  ASP   118      -6.533   1.223  -8.472  1.00 25.00           C
ATOM    119  CA  ARG   119      -4.234  -0.330 -11.003  1.00 25.00           C
ATOM    120  CA  VAL   120      -1.677   2.010  -9.441  1.00 25.00           C
ATOM    121  CA  VAL   121       1.083   4.030  -7.785  1.00 25.00           C
ATOM    122  CA  VAL   122       4.669   3.042  -8.630  1.00 25.00           C
ATOM    123  CA  ASN   123       7.364   5.617  -9.021  1.00 25.00           C
ATOM    124  CA  ALA   124       9.288   8.777  -8.179  1.00 25.00           C
ATOM    125  CA  ASP   125      10.327  10.432  -4.871  1.00 25.00           C
ATOM    126  CA  GLU   126       9.008  10.645  -1.263  1.00 25.00           C
ATOM    127  CA  GLY   127       5.467   9.363  -0.737  1.00 25.00           C
ATOM    128  CA  TYR   128       4.414   5.853   0.268  1.00 25.00           C
ATOM    129  CA  VAL   129       6.117   2.830   1.753  1.00 25.00           C
ATOM    130  CA  GLU   130       9.398   1.933   3.436  1.00 25.00           C
ATOM    131  CA  LEU   131      11.817  -0.996   3.279  1.00 25.00           C
ATOM    132  CA  ILE   132      11.487  -2.607   6.694  1.00 25.00           C
ATOM    133  CA  GLU   133      14.417  -2.228   9.075  1.00 25.00           C
ATOM    134  CA  LEU   134      17.030  -1.641  11.839  1.00 25.00           C
ATOM    135  CA  GLU   135      19.837  -1.567  14.402  1.00 25.00           C
ATOM    136  CA  HIS   136      22.530   1.130  14.558  1.00 25.00           C
ATOM    137  CA  HIS   137      25.797  -0.567  15.433  1.00 25.00           C
ATOM    138  CA  HIS   138      28.012   0.059  12.371  1.00 25.00           C
ATOM    139  CA  HIS   139      29.286  -3.308  11.140  1.00 25.00           C
ATOM    140  CA  HIS   140      32.390  -4.660  12.853  1.00 25.00           C
ATOM    141  CA  HIS   141      34.227  -6.640  15.583  1.00 25.00           C
TER
END
