
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  132 , name T0357TS168_4
# Molecule2: number of CA atoms  132 ( 2030),  selected  132 , name T0357.pdb
# PARAMETERS: T0357TS168_4.T0357.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    55        50 - 104         4.96    11.24
  LCS_AVERAGE:     29.89

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        88 - 103         1.88    12.91
  LONGEST_CONTINUOUS_SEGMENT:    16        89 - 104         1.58    13.13
  LCS_AVERAGE:      7.47

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        89 - 103         0.95    12.73
  LCS_AVERAGE:      4.61

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     V       2     V       2      3    5   12     3    3    3    3    5    6    7    9   11   19   23   26   33   41   44   54   58   62   63   70 
LCS_GDT     K       3     K       3      4    5   12     3    4    4    4    5    6   13   17   23   28   32   37   41   47   51   58   62   67   73   75 
LCS_GDT     F       4     F       4      4    5   12     3    4    4    4    7   10   16   19   24   30   33   39   44   48   53   63   65   68   74   80 
LCS_GDT     A       5     A       5      4    5   12     3    4    5    5    5   10   13   17   23   28   30   36   44   47   51   58   62   67   73   75 
LCS_GDT     C       6     C       6      4    8   12     3    5    5    6   10   12   16   19   27   30   35   39   46   49   53   63   65   68   76   80 
LCS_GDT     R       7     R       7      4    8   12     3    5    5    6    6    8   16   23   26   32   37   48   52   57   61   67   75   79   83   86 
LCS_GDT     A       8     A       8      4    8   12     3    4    5    5    7   13   17   24   27   36   40   48   52   57   61   65   71   75   82   86 
LCS_GDT     I       9     I       9      4    8   12     3    5    5    6    6    8   10   17   20   25   31   40   42   45   50   59   62   63   70   72 
LCS_GDT     T      10     T      10      4    8   13     3    5    5    6    6    8    8   10   12   15   19   21   22   23   26   30   33   38   45   52 
LCS_GDT     R      11     R      11      4    8   15     3    5    5    6    6    8    8    9   11   12   16   18   20   23   26   30   32   38   43   48 
LCS_GDT     G      12     G      12      4    8   18     3    3    5    6    6    8   10   10   12   12   16   18   20   23   26   28   32   35   41   49 
LCS_GDT     R      13     R      13      4    8   18     3    3    4    5    7    9   11   12   13   14   17   18   20   23   26   30   32   38   41   49 
LCS_GDT     A      14     A      14      4    6   20     3    3    4    5    7   10   11   12   14   18   19   23   27   27   31   38   42   48   54   62 
LCS_GDT     E      15     E      15      4    6   20     3    3    4    5    7   10   11   14   14   18   20   26   29   34   36   38   51   53   60   67 
LCS_GDT     G      16     G      16      4    7   20     3    3    5    5    9   11   14   21   21   27   30   37   40   44   49   52   55   59   65   70 
LCS_GDT     E      17     E      17      4    7   20     3    3    5    5    9   10   14   16   16   19   28   29   33   38   42   45   49   54   58   64 
LCS_GDT     A      18     A      18      4    7   20     3    3    5    7    9   12   16   21   25   26   30   34   36   38   43   47   55   59   63   72 
LCS_GDT     L      19     L      19      4    9   20     3    6    8    8   11   15   17   21   25   26   30   34   36   38   44   47   49   56   63   70 
LCS_GDT     V      20     V      20      4    9   20     3    6    8    8   11   12   16   21   22   26   30   34   36   38   43   47   48   54   60   63 
LCS_GDT     T      21     T      21      5    9   20     3    4    6    7   10   11   13   16   20   22   30   34   36   38   42   47   48   55   60   63 
LCS_GDT     K      22     K      22      5    9   20     3    6    8    8   11   12   14   16   16   25   29   31   34   37   42   47   48   55   60   63 
LCS_GDT     E      23     E      23      5    9   20     3    6    8    8   11   12   14   16   16   25   29   31   34   38   43   47   55   59   63   67 
LCS_GDT     Y      24     Y      24      5    9   20     3    6    8    8   11   12   14   16   18   21   24   29   32   38   43   50   55   59   64   70 
LCS_GDT     I      25     I      25      5    9   20     3    4    6    8   11   12   14   20   23   25   29   36   43   47   52   59   65   71   76   81 
LCS_GDT     S      26     S      26      5    9   20     3    6    8    8   11   12   14   16   19   24   28   39   44   46   53   58   62   69   76   81 
LCS_GDT     F      27     F      27      4    9   20     4    4    8   11   12   14   18   24   28   32   40   45   53   57   64   72   78   81   84   86 
LCS_GDT     L      28     L      28      4    9   20     4    4    8    9   10   14   18   22   28   34   40   47   53   57   64   72   78   81   84   86 
LCS_GDT     G      29     G      29      4    8   20     4    6    8    9   11   14   16   21   27   30   37   45   50   57   64   72   78   81   84   86 
LCS_GDT     G      30     G      30      4    7   20     4    4    8    9   10   14   17   21   27   30   40   45   52   57   64   72   78   81   84   86 
LCS_GDT     I      31     I      31      3    7   20     3    3    4    6    7   11   17   27   34   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     D      32     D      32      4    7   20     4    7    8    9   18   20   24   30   33   39   47   52   56   60   64   68   78   81   84   86 
LCS_GDT     K      33     K      33      4    7   20     4    4    8   11   15   17   24   30   35   39   43   46   49   53   64   67   70   73   77   80 
LCS_GDT     E      34     E      34      4    7   20     4    4    5    6   12   16   20   27   35   40   43   46   49   53   59   61   66   70   74   77 
LCS_GDT     T      35     T      35      4    7   20     4    4    5    6    7    7   10   19   25   37   43   46   49   53   60   64   66   71   77   80 
LCS_GDT     G      36     G      36      4    7   20     3    3    4    5    6    8   10   12   25   37   43   46   49   56   61   64   68   73   77   80 
LCS_GDT     I      37     I      37      4    7   18     3    3    4    7    8    8   10   12   13   15   16   18   19   21   58   64   67   71   77   85 
LCS_GDT     V      38     V      38      3    7   18     3    3    3    5    7   12   15   23   31   40   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     K      39     K      39      3    7   18     3    3    4    6    7   12   15   28   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     E      40     E      40      4    7   18     3    4    4    7   13   15   21   29   35   41   47   51   56   60   65   72   78   81   84   86 
LCS_GDT     D      41     D      41      4    7   18     3    4    4    6    7    8   21   29   34   35   40   46   53   57   63   69   75   77   82   86 
LCS_GDT     C      42     C      42      4    7   18     1    4    4    6    7    8   10   12   13   32   34   40   45   49   60   66   72   77   80   85 
LCS_GDT     E      43     E      43      5    7   18     4    4    5    6    7    8    9   11   13   14   18   23   44   45   48   53   62   66   71   78 
LCS_GDT     I      44     I      44      5    7   18     4    4    5    6    7    8    9   11   13   13   30   38   44   49   53   66   72   77   80   85 
LCS_GDT     K      45     K      45      5    7   18     4    4    5   10   12   16   21   29   34   35   39   41   46   53   60   66   72   77   80   85 
LCS_GDT     G      46     G      46      5    7   16     4    4    5    6    8   12   21   26   33   38   41   48   54   58   61   66   74   77   80   85 
LCS_GDT     E      47     E      47      5    7   16     4    4    5    6    9   12   19   25   34   41   46   50   55   58   64   69   75   77   80   85 
LCS_GDT     S      48     S      48      4    7   16     3    4    4    6    9   12   15   22   31   40   46   50   55   59   64   70   75   79   83   86 
LCS_GDT     V      49     V      49      4    7   35     3    4    4    6    9   12   14   22   31   36   46   50   55   60   65   70   75   80   84   86 
LCS_GDT     A      50     A      50      4    6   55     3    4    7    7    9   12   18   25   34   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     G      51     G      51      5   11   55     3    3   10   15   17   21   26   30   36   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     R      52     R      52      5   11   55     3    5   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     I      53     I      53      5   11   55     3    5    9   12   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     L      54     L      54      6   11   55     3    4    9   11   17   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     V      55     V      55      6   11   55     3    4    8   10   14   20   26   30   36   42   47   52   57   59   65   72   78   81   84   86 
LCS_GDT     F      56     F      56      6   11   55     3    5    9   11   17   20   26   30   36   42   47   52   57   59   65   72   78   81   84   86 
LCS_GDT     P      57     P      57      6   11   55     3    4    8   11   17   20   26   30   36   42   47   52   53   59   65   72   78   81   84   86 
LCS_GDT     G      58     G      58      6   11   55     3    4    7   11   17   20   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     G      59     G      59      6   11   55     3    4    7    9   13   16   24   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     K      60     K      60      4   11   55     3    3    8   11   12   15   21   26   33   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     G      61     G      61      4   11   55     3    6    8   11   12   15   21   26   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     S      62     S      62      4    6   55     3    5    9   11   17   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     T      63     T      63      4   12   55     3    4    5    7   11   15   21   28   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     V      64     V      64      4   12   55     3    4    6   11   12   17   21   29   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     G      65     G      65     10   12   55     9   10   10   11   13   17   21   29   35   41   47   51   56   60   65   72   78   81   84   86 
LCS_GDT     S      66     S      66     10   12   55     4   10   10   11   12   16   21   26   34   36   41   49   55   59   65   72   78   81   84   86 
LCS_GDT     Y      67     Y      67     10   12   55     9   10   10   11   13   17   21   29   35   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     V      68     V      68     10   12   55     9   10   10   11   15   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     L      69     L      69     10   12   55     9   10   10   11   12   17   21   29   34   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     L      70     L      70     10   12   55     9   10   10   11   13   20   25   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     N      71     N      71     10   12   55     9   10   10   11   17   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     L      72     L      72     10   12   55     9   10   10   11   17   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     R      73     R      73     10   12   55     9   10   10   11   17   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     K      74     K      74     10   12   55     9   10   10   11   17   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     N      75     N      75      3   12   55     3    3    5   10   12   16   21   26   34   38   45   49   56   60   65   72   77   81   84   86 
LCS_GDT     G      76     G      76      3    6   55     3    3    7   10   13   17   21   29   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     V      77     V      77      5    9   55     3    3    5    7   12   17   21   29   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     A      78     A      78      5    9   55     3    4    5    8   13   17   21   29   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     P      79     P      79      5    9   55     3    4    5    8   13   16   21   29   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     K      80     K      80      5    9   55    10   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     A      81     A      81      5    9   55     3    5    8   12   15   20   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     I      82     I      82      5    9   55     3    5    7   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     I      83     I      83      5    9   55     3    5    7   12   15   18   22   27   35   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     N      84     N      84      5    9   55     1    5    7   12   15   18   24   30   35   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     K      85     K      85      5    9   55     2    5    7   12   15   18   22   30   35   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     K      86     K      86      5    9   55     1    4    7   12   15   18   24   30   35   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     T      87     T      87      5    9   55     2    4    7   12   14   18   22   30   35   40   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     E      88     E      88      3   16   55     3    4    6   12   14   18   24   30   35   40   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     T      89     T      89     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     I      90     I      90     15   16   55    11   15   16   17   18   21   25   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     I      91     I      91     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     A      92     A      92     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     V      93     V      93     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     G      94     G      94     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     A      95     A      95     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     A      96     A      96     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     M      97     M      97     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     A      98     A      98     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     E      99     E      99     15   16   55    11   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     I     100     I     100     15   16   55     4   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     P     101     P     101     15   16   55     3   15   16   17   18   21   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     L     102     L     102     15   16   55     3    4    6    8   16   20   24   29   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     V     103     V     103     15   16   55     4   15   16   17   18   21   24   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     E     104     E     104      3   16   55     3    4    6   12   14   18   24   30   35   41   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     V     105     V     105      3   11   50     3    3    4    4    6   17   22   25   34   40   43   46   55   59   65   68   74   80   84   86 
LCS_GDT     R     106     R     106      3   12   50     3    6    8   11   15   17   22   25   29   31   36   44   48   52   53   57   64   70   74   78 
LCS_GDT     D     107     D     107      4   12   50     3    3    7   11   15   17   22   25   29   33   40   45   49   52   57   57   62   70   74   77 
LCS_GDT     E     108     E     108      7   12   50     3    4    8   11   15   17   22   25   29   33   40   45   49   52   57   61   66   70   74   79 
LCS_GDT     K     109     K     109      7   12   50     6    7    8   11   15   17   22   25   35   40   47   49   55   60   65   68   74   80   84   86 
LCS_GDT     F     110     F     110      7   12   50     6    7    8   11   15   17   22   30   35   40   47   52   56   60   65   71   78   81   84   86 
LCS_GDT     F     111     F     111      7   12   50     6    7    8   11   15   17   22   27   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     E     112     E     112      7   12   50     6    7    8   11   15   17   22   27   35   41   47   52   56   60   65   71   78   81   84   86 
LCS_GDT     A     113     A     113      7   12   50     6    7    8   11   15   17   22   30   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     V     114     V     114      7   12   50     6    7    8   11   15   17   24   30   35   41   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     K     115     K     115      7   12   50     3    4    8   11   15   17   22   27   35   40   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     T     116     T     116      3   12   50     3    4    5   11   12   17   22   29   35   40   47   52   56   60   65   72   78   81   84   86 
LCS_GDT     G     117     G     117      3   12   50     3    4    5    8    9   14   22   25   31   40   43   46   55   60   65   72   78   81   84   86 
LCS_GDT     D     118     D     118      3    9   50     3    4    7   10   15   18   22   25   31   39   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     R     119     R     119      4    9   50     3    4    7   10   15   18   22   25   30   42   47   52   57   59   64   68   73   78   82   84 
LCS_GDT     V     120     V     120      5    9   50     3    4    7   12   15   20   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     V     121     V     121      5    9   50     3    3    7    8   14   17   22   25   36   42   47   52   57   59   64   71   78   81   84   86 
LCS_GDT     V     122     V     122      5    9   50     3    4    7   12   14   21   24   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     N     123     N     123      5    9   50     3    6    8   12   13   17   22   30   35   40   43   49   57   60   64   68   77   81   84   86 
LCS_GDT     A     124     A     124      5    9   50     3    3    7   10   14   21   24   26   34   40   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     D     125     D     125      3    7   50     3    4    5   11   15   20   26   30   36   42   47   52   57   60   65   72   78   81   84   86 
LCS_GDT     E     126     E     126      4    7   50     3    4    6    7   15   17   22   25   29   42   47   52   57   59   64   68   71   78   82   84 
LCS_GDT     G     127     G     127      4    7   50     2    4    5    7    8   11   21   23   27   31   38   45   51   56   61   67   70   75   78   84 
LCS_GDT     Y     128     Y     128      4    7   50     3    4    6    7   11   17   21   25   36   42   47   52   57   59   64   68   76   81   84   86 
LCS_GDT     V     129     V     129      4    7   50     3    4    6    7   11   15   21   25   29   41   47   52   57   59   64   72   78   81   84   86 
LCS_GDT     E     130     E     130      4    7   17     3    4    4    6    7   12   16   21   25   26   30   34   36   38   46   54   60   64   70   76 
LCS_GDT     L     131     L     131      4    7   17     3    4    6    7    9   12   16   21   25   26   31   34   37   46   50   55   60   67   70   77 
LCS_GDT     I     132     I     132      3    7   17     1    3    5    7    8   12   15   19   25   26   30   34   36   43   46   52   60   64   67   75 
LCS_GDT     E     133     E     133      3    6   17     0    3    4    6    8   10   15   19   25   26   30   34   37   43   49   52   60   64   67   75 
LCS_AVERAGE  LCS_A:  13.99  (   4.61    7.47   29.89 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     15     16     17     18     21     26     30     36     42     47     52     57     60     65     72     78     81     84     86 
GDT PERCENT_CA   8.33  11.36  12.12  12.88  13.64  15.91  19.70  22.73  27.27  31.82  35.61  39.39  43.18  45.45  49.24  54.55  59.09  61.36  63.64  65.15
GDT RMS_LOCAL    0.26   0.58   0.69   0.88   1.01   1.72   2.36   2.68   3.16   3.46   3.72   4.04   6.10   4.74   5.07   5.60   5.86   6.00   6.19   6.33
GDT RMS_ALL_CA  12.56  12.66  12.59  12.55  12.67  12.56  11.46  11.74  11.53  11.77  11.67  11.52  11.57  11.75  11.91  11.17  11.33  11.30  11.41  11.44

#      Molecule1      Molecule2       DISTANCE
LGA    V       2      V       2         22.992
LGA    K       3      K       3         18.546
LGA    F       4      F       4         14.635
LGA    A       5      A       5         15.380
LGA    C       6      C       6         11.777
LGA    R       7      R       7          7.058
LGA    A       8      A       8          6.255
LGA    I       9      I       9         11.105
LGA    T      10      T      10         16.124
LGA    R      11      R      11         19.741
LGA    G      12      G      12         23.317
LGA    R      13      R      13         21.287
LGA    A      14      A      14         16.877
LGA    E      15      E      15         17.267
LGA    G      16      G      16         13.768
LGA    E      17      E      17         16.560
LGA    A      18      A      18         13.245
LGA    L      19      L      19         14.637
LGA    V      20      V      20         17.383
LGA    T      21      T      21         18.785
LGA    K      22      K      22         20.664
LGA    E      23      E      23         18.535
LGA    Y      24      Y      24         17.188
LGA    I      25      I      25         11.299
LGA    S      26      S      26         12.312
LGA    F      27      F      27          9.048
LGA    L      28      L      28         10.060
LGA    G      29      G      29         10.335
LGA    G      30      G      30          9.519
LGA    I      31      I      31          6.886
LGA    D      32      D      32         10.457
LGA    K      33      K      33         14.630
LGA    E      34      E      34         16.530
LGA    T      35      T      35         14.985
LGA    G      36      G      36         12.638
LGA    I      37      I      37         12.755
LGA    V      38      V      38          9.321
LGA    K      39      K      39         13.168
LGA    E      40      E      40         14.212
LGA    D      41      D      41         15.721
LGA    C      42      C      42         17.811
LGA    E      43      E      43         17.190
LGA    I      44      I      44         16.789
LGA    K      45      K      45         19.542
LGA    G      46      G      46         21.103
LGA    E      47      E      47         18.965
LGA    S      48      S      48         16.372
LGA    V      49      V      49         14.604
LGA    A      50      A      50         12.083
LGA    G      51      G      51          5.125
LGA    R      52      R      52          2.387
LGA    I      53      I      53          1.874
LGA    L      54      L      54          1.221
LGA    V      55      V      55          2.616
LGA    F      56      F      56          2.192
LGA    P      57      P      57          3.329
LGA    G      58      G      58          2.840
LGA    G      59      G      59          4.984
LGA    K      60      K      60          7.239
LGA    G      61      G      61          5.945
LGA    S      62      S      62          1.874
LGA    T      63      T      63          8.276
LGA    V      64      V      64          7.844
LGA    G      65      G      65          8.688
LGA    S      66      S      66          9.685
LGA    Y      67      Y      67          6.739
LGA    V      68      V      68          5.285
LGA    L      69      L      69          6.354
LGA    L      70      L      70          4.828
LGA    N      71      N      71          2.843
LGA    L      72      L      72          3.708
LGA    R      73      R      73          3.606
LGA    K      74      K      74          1.352
LGA    N      75      N      75          7.648
LGA    G      76      G      76          7.944
LGA    V      77      V      77         10.411
LGA    A      78      A      78          8.410
LGA    P      79      P      79          4.765
LGA    K      80      K      80          1.110
LGA    A      81      A      81          2.979
LGA    I      82      I      82          3.348
LGA    I      83      I      83          6.094
LGA    N      84      N      84          8.466
LGA    K      85      K      85         10.681
LGA    K      86      K      86         10.880
LGA    T      87      T      87         10.436
LGA    E      88      E      88          8.173
LGA    T      89      T      89          3.401
LGA    I      90      I      90          3.654
LGA    I      91      I      91          3.203
LGA    A      92      A      92          1.838
LGA    V      93      V      93          1.759
LGA    G      94      G      94          2.726
LGA    A      95      A      95          0.920
LGA    A      96      A      96          1.357
LGA    M      97      M      97          3.492
LGA    A      98      A      98          2.728
LGA    E      99      E      99          2.240
LGA    I     100      I     100          1.532
LGA    P     101      P     101          2.967
LGA    L     102      L     102          5.296
LGA    V     103      V     103          5.874
LGA    E     104      E     104         10.462
LGA    V     105      V     105         16.932
LGA    R     106      R     106         19.721
LGA    D     107      D     107         22.425
LGA    E     108      E     108         21.689
LGA    K     109      K     109         18.707
LGA    F     110      F     110         14.713
LGA    F     111      F     111         14.444
LGA    E     112      E     112         17.300
LGA    A     113      A     113         15.157
LGA    V     114      V     114         11.422
LGA    K     115      K     115         14.976
LGA    T     116      T     116         14.237
LGA    G     117      G     117         12.536
LGA    D     118      D     118          6.963
LGA    R     119      R     119          5.057
LGA    V     120      V     120          3.047
LGA    V     121      V     121          4.584
LGA    V     122      V     122          4.688
LGA    N     123      N     123          8.101
LGA    A     124      A     124          6.901
LGA    D     125      D     125          3.876
LGA    E     126      E     126          6.349
LGA    G     127      G     127          7.663
LGA    Y     128      Y     128          4.796
LGA    V     129      V     129          5.147
LGA    E     130      E     130         10.161
LGA    L     131      L     131         10.112
LGA    I     132      I     132         13.690
LGA    E     133      E     133         14.136

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  132    4.0     30    2.68    25.379    20.417     1.081

LGA_LOCAL      RMSD =  2.676  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 11.739  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 10.929  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.682682 * X  +   0.521590 * Y  +   0.511751 * Z  +   0.986840
  Y_new =  -0.483659 * X  +  -0.847518 * Y  +   0.218604 * Z  +  -0.057541
  Z_new =   0.547740 * X  +  -0.098277 * Y  +   0.830857 * Z  +  -1.588017 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.117736    3.023856  [ DEG:    -6.7458    173.2542 ]
  Theta =  -0.579660   -2.561933  [ DEG:   -33.2121   -146.7879 ]
  Phi   =  -2.525205    0.616388  [ DEG:  -144.6836     35.3164 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0357TS168_4                                  
REMARK     2: T0357.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0357TS168_4.T0357.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  132   4.0   30   2.68  20.417    10.93
REMARK  ---------------------------------------------------------- 
MOLECULE T0357TS168_4
PFRMAT TS
TARGET T0357
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      -5.514  17.264  12.151  1.00 25.00           C
ATOM      2  CA  VAL     2      -3.874  13.916  11.179  1.00 25.00           C
ATOM      3  CA  LYS     3      -0.996  12.153   9.333  1.00 25.00           C
ATOM      4  CA  PHE     4      -1.040   8.567   8.150  1.00 25.00           C
ATOM      5  CA  ALA     5      -4.041   6.612   6.712  1.00 25.00           C
ATOM      6  CA  CYS     6      -1.718   3.584   7.096  1.00 25.00           C
ATOM      7  CA  ARG     7       1.710   4.194   5.709  1.00 25.00           C
ATOM      8  CA  ALA     8       3.023   5.051   2.196  1.00 25.00           C
ATOM      9  CA  ILE     9       1.710   7.697  -0.200  1.00 25.00           C
ATOM     10  CA  THR    10       0.080  11.038  -1.011  1.00 25.00           C
ATOM     11  CA  ARG    11      -2.716  12.463   1.035  1.00 25.00           C
ATOM     12  CA  GLY    12      -6.051  11.333   2.424  1.00 25.00           C
ATOM     13  CA  ARG    13      -6.662   9.502  -0.886  1.00 25.00           C
ATOM     14  CA  ALA    14      -4.265   6.541  -0.598  1.00 25.00           C
ATOM     15  CA  GLU    15      -2.048   5.257   2.293  1.00 25.00           C
ATOM     16  CA  GLY    16      -1.608   2.219   0.031  1.00 25.00           C
ATOM     17  CA  GLU    17      -0.952   0.382   3.299  1.00 25.00           C
ATOM     18  CA  ALA    18       1.223  -2.240   1.654  1.00 25.00           C
ATOM     19  CA  LEU    19      -1.168  -4.022   4.040  1.00 25.00           C
ATOM     20  CA  VAL    20      -1.695  -7.084   6.208  1.00 25.00           C
ATOM     21  CA  THR    21      -0.188 -10.588   6.432  1.00 25.00           C
ATOM     22  CA  LYS    22      -3.706 -11.584   7.642  1.00 25.00           C
ATOM     23  CA  GLU    23      -6.830 -13.535   6.558  1.00 25.00           C
ATOM     24  CA  TYR    24      -6.972 -15.044   3.059  1.00 25.00           C
ATOM     25  CA  ILE    25      -6.297 -12.534   0.227  1.00 25.00           C
ATOM     26  CA  SER    26      -8.157 -13.836  -2.825  1.00 25.00           C
ATOM     27  CA  PHE    27      -8.608 -10.207  -3.896  1.00 25.00           C
ATOM     28  CA  LEU    28     -12.313 -10.535  -3.247  1.00 25.00           C
ATOM     29  CA  GLY    29     -13.017 -10.209  -6.929  1.00 25.00           C
ATOM     30  CA  GLY    30     -12.248  -8.147 -10.015  1.00 25.00           C
ATOM     31  CA  ILE    31      -9.561  -6.649  -7.836  1.00 25.00           C
ATOM     32  CA  ASP    32     -11.589  -5.142  -4.940  1.00 25.00           C
ATOM     33  CA  LYS    33     -13.293  -4.596  -1.545  1.00 25.00           C
ATOM     34  CA  GLU    34      -9.934  -3.851   0.077  1.00 25.00           C
ATOM     35  CA  THR    35      -7.007  -2.763  -2.145  1.00 25.00           C
ATOM     36  CA  GLY    36      -4.059  -2.221   0.208  1.00 25.00           C
ATOM     37  CA  ILE    37      -1.119  -2.042  -2.153  1.00 25.00           C
ATOM     38  CA  VAL    38      -0.951  -4.258  -5.301  1.00 25.00           C
ATOM     39  CA  LYS    39      -1.871  -3.325  -8.865  1.00 25.00           C
ATOM     40  CA  GLU    40      -3.682  -1.089 -11.360  1.00 25.00           C
ATOM     41  CA  ASP    41      -3.526  -2.910 -14.754  1.00 25.00           C
ATOM     42  CA  CYS    42       0.095  -1.893 -15.366  1.00 25.00           C
ATOM     43  CA  GLU    43       0.860  -5.588 -15.678  1.00 25.00           C
ATOM     44  CA  ILE    44       4.517  -4.597 -15.730  1.00 25.00           C
ATOM     45  CA  LYS    45       4.020  -3.653 -19.370  1.00 25.00           C
ATOM     46  CA  GLY    46       5.441  -0.383 -20.627  1.00 25.00           C
ATOM     47  CA  GLU    47       7.461   1.511 -18.005  1.00 25.00           C
ATOM     48  CA  SER    48       7.680   1.183 -14.248  1.00 25.00           C
ATOM     49  CA  VAL    49       9.283   1.780 -10.797  1.00 25.00           C
ATOM     50  CA  ALA    50      10.490  -1.812 -10.738  1.00 25.00           C
ATOM     51  CA  GLY    51       6.714  -2.513 -10.668  1.00 25.00           C
ATOM     52  CA  ARG    52       3.377  -1.792  -8.902  1.00 25.00           C
ATOM     53  CA  ILE    53       1.945  -0.211  -5.792  1.00 25.00           C
ATOM     54  CA  LEU    54      -1.773   0.712  -5.866  1.00 25.00           C
ATOM     55  CA  VAL    55      -4.737   1.493  -3.669  1.00 25.00           C
ATOM     56  CA  PHE    56      -6.991   2.096  -0.686  1.00 25.00           C
ATOM     57  CA  PRO    57      -7.248   3.118   2.986  1.00 25.00           C
ATOM     58  CA  GLY    58      -6.448   1.669   6.445  1.00 25.00           C
ATOM     59  CA  GLY    59      -3.900  -1.109   7.122  1.00 25.00           C
ATOM     60  CA  LYS    60      -4.822  -0.463  10.760  1.00 25.00           C
ATOM     61  CA  GLY    61      -4.780  -4.282  10.718  1.00 25.00           C
ATOM     62  CA  SER    62      -7.255  -4.862   7.812  1.00 25.00           C
ATOM     63  CA  THR    63      -6.176  -4.731   4.150  1.00 25.00           C
ATOM     64  CA  VAL    64      -4.685  -7.677   2.224  1.00 25.00           C
ATOM     65  CA  GLY    65      -4.177  -7.129  -1.532  1.00 25.00           C
ATOM     66  CA  SER    66      -0.516  -6.184  -0.924  1.00 25.00           C
ATOM     67  CA  TYR    67      -0.026  -9.340   1.189  1.00 25.00           C
ATOM     68  CA  VAL    68      -1.588 -11.469  -1.585  1.00 25.00           C
ATOM     69  CA  LEU    69       0.734  -9.853  -4.166  1.00 25.00           C
ATOM     70  CA  LEU    70       3.758 -10.565  -1.928  1.00 25.00           C
ATOM     71  CA  ASN    71       2.655 -14.213  -1.555  1.00 25.00           C
ATOM     72  CA  LEU    72       2.283 -14.514  -5.355  1.00 25.00           C
ATOM     73  CA  ARG    73       5.784 -13.041  -5.840  1.00 25.00           C
ATOM     74  CA  LYS    74       7.210 -15.532  -3.304  1.00 25.00           C
ATOM     75  CA  ASN    75      10.465 -13.613  -3.746  1.00 25.00           C
ATOM     76  CA  GLY    76      12.363 -11.856  -6.533  1.00 25.00           C
ATOM     77  CA  VAL    77      10.823  -8.687  -7.885  1.00 25.00           C
ATOM     78  CA  ALA    78       9.950  -8.093  -4.276  1.00 25.00           C
ATOM     79  CA  PRO    79       6.152  -7.752  -4.821  1.00 25.00           C
ATOM     80  CA  LYS    80       6.292  -4.011  -5.184  1.00 25.00           C
ATOM     81  CA  ALA    81       3.723  -3.913  -2.387  1.00 25.00           C
ATOM     82  CA  ILE    82       5.137  -0.515  -1.367  1.00 25.00           C
ATOM     83  CA  ILE    83       5.355   0.575   2.200  1.00 25.00           C
ATOM     84  CA  ASN    84       6.509   2.825   5.009  1.00 25.00           C
ATOM     85  CA  LYS    85       7.191   5.510   7.582  1.00 25.00           C
ATOM     86  CA  LYS    86       6.984   4.919  11.365  1.00 25.00           C
ATOM     87  CA  THR    87       8.515   1.571  10.456  1.00 25.00           C
ATOM     88  CA  GLU    88       6.348  -0.602  12.703  1.00 25.00           C
ATOM     89  CA  THR    89       3.419   1.410  11.506  1.00 25.00           C
ATOM     90  CA  ILE    90       0.838  -1.306  10.713  1.00 25.00           C
ATOM     91  CA  ILE    91       1.323  -0.706   6.962  1.00 25.00           C
ATOM     92  CA  ALA    92       5.120  -0.971   7.387  1.00 25.00           C
ATOM     93  CA  VAL    93       4.700  -4.251   9.318  1.00 25.00           C
ATOM     94  CA  GLY    94       2.433  -5.619   6.551  1.00 25.00           C
ATOM     95  CA  ALA    95       5.025  -4.637   3.908  1.00 25.00           C
ATOM     96  CA  ALA    96       7.775  -6.382   5.922  1.00 25.00           C
ATOM     97  CA  MET    97       5.613  -9.531   6.194  1.00 25.00           C
ATOM     98  CA  ALA    98       4.997  -9.464   2.414  1.00 25.00           C
ATOM     99  CA  GLU    99       8.160  -7.919   1.104  1.00 25.00           C
ATOM    100  CA  ILE   100       8.548  -4.320  -0.058  1.00 25.00           C
ATOM    101  CA  PRO   101      10.584  -1.476   1.433  1.00 25.00           C
ATOM    102  CA  LEU   102      10.261   2.128   0.227  1.00 25.00           C
ATOM    103  CA  VAL   103      11.055   4.122   3.299  1.00 25.00           C
ATOM    104  CA  GLU   104      11.903   2.774   6.743  1.00 25.00           C
ATOM    105  CA  VAL   105      15.388   1.158   6.768  1.00 25.00           C
ATOM    106  CA  ARG   106      15.943   0.866   2.972  1.00 25.00           C
ATOM    107  CA  ASP   107      18.424   3.745   3.095  1.00 25.00           C
ATOM    108  CA  GLU   108      15.718   6.386   3.473  1.00 25.00           C
ATOM    109  CA  LYS   109      14.049   9.298   1.746  1.00 25.00           C
ATOM    110  CA  PHE   110      12.279   7.148  -0.883  1.00 25.00           C
ATOM    111  CA  PHE   111       8.872   8.239   0.484  1.00 25.00           C
ATOM    112  CA  GLU   112       9.959  11.908   0.333  1.00 25.00           C
ATOM    113  CA  ALA   113      11.121  11.441  -3.286  1.00 25.00           C
ATOM    114  CA  VAL   114       7.764   9.831  -4.183  1.00 25.00           C
ATOM    115  CA  LYS   115       5.901  12.756  -2.558  1.00 25.00           C
ATOM    116  CA  THR   116       3.765  12.624  -5.692  1.00 25.00           C
ATOM    117  CA  GLY   117       2.907   8.926  -5.936  1.00 25.00           C
ATOM    118  CA  ASP   118       0.539   7.647  -8.605  1.00 25.00           C
ATOM    119  CA  ARG   119       0.640   4.023  -9.720  1.00 25.00           C
ATOM    120  CA  VAL   120       3.957   3.926  -7.772  1.00 25.00           C
ATOM    121  CA  VAL   121       6.626   1.515  -6.537  1.00 25.00           C
ATOM    122  CA  VAL   122       9.259  -0.365  -4.515  1.00 25.00           C
ATOM    123  CA  ASN   123      11.580  -3.137  -5.634  1.00 25.00           C
ATOM    124  CA  ALA   124      14.301  -1.250  -3.709  1.00 25.00           C
ATOM    125  CA  ASP   125      16.340   1.720  -2.485  1.00 25.00           C
ATOM    126  CA  GLU   126      15.462   4.334  -5.089  1.00 25.00           C
ATOM    127  CA  GLY   127      11.938   5.069  -6.106  1.00 25.00           C
ATOM    128  CA  TYR   128       8.910   4.783  -3.844  1.00 25.00           C
ATOM    129  CA  VAL   129       5.541   4.512  -2.183  1.00 25.00           C
ATOM    130  CA  GLU   130       1.940   3.438  -3.094  1.00 25.00           C
ATOM    131  CA  LEU   131      -1.156   5.208  -4.322  1.00 25.00           C
ATOM    132  CA  ILE   132      -4.226   6.089  -6.283  1.00 25.00           C
ATOM    133  CA  GLU   133      -6.761   8.403  -8.024  1.00 25.00           C
ATOM    134  CA  LEU   134      -9.519  10.320  -9.840  1.00 25.00           C
ATOM    135  CA  GLU   135     -11.692  12.897 -11.690  1.00 25.00           C
ATOM    136  CA  HIS   136     -14.939  13.100 -13.577  1.00 25.00           C
ATOM    137  CA  HIS   137     -16.615  10.277 -15.405  1.00 25.00           C
ATOM    138  CA  HIS   138     -19.999  11.974 -14.736  1.00 25.00           C
ATOM    139  CA  HIS   139     -21.948  11.791 -11.465  1.00 25.00           C
ATOM    140  CA  HIS   140     -24.380  14.629 -12.174  1.00 25.00           C
ATOM    141  CA  HIS   141     -27.888  13.112 -11.806  1.00 25.00           C
TER
END
