
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  132 , name T0357TS168_5
# Molecule2: number of CA atoms  132 ( 2030),  selected  132 , name T0357.pdb
# PARAMETERS: T0357TS168_5.T0357.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    48        56 - 103         4.98    15.03
  LONGEST_CONTINUOUS_SEGMENT:    48        57 - 104         4.99    14.92
  LCS_AVERAGE:     23.13

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        89 - 103         1.53    15.24
  LCS_AVERAGE:      6.54

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11        89 - 99          0.54    17.70
  LCS_AVERAGE:      4.06

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     V       2     V       2      3    7   13     3    3    3    6    7    8    8    9    9   11   11   20   26   28   29   38   42   44   51   61 
LCS_GDT     K       3     K       3      5    7   13     3    5    5    6    7    8    8   10   10   13   20   21   26   28   33   42   46   50   53   61 
LCS_GDT     F       4     F       4      5    7   13     3    5    5    6    7    9   11   11   12   17   20   21   26   28   33   38   43   50   53   61 
LCS_GDT     A       5     A       5      5    7   17     3    5    5    6    7    9   11   11   13   17   20   21   26   28   33   38   42   50   53   61 
LCS_GDT     C       6     C       6      5    7   17     3    5    5    7    8    9    9   11   13   17   19   20   26   28   33   38   42   47   50   61 
LCS_GDT     R       7     R       7      5    7   17     3    5    5    7    8    9    9   11   13   17   19   23   26   28   33   35   36   45   47   48 
LCS_GDT     A       8     A       8      3    7   17     3    3    5    6    7    8   10   12   13   15   20   21   26   29   33   38   42   47   53   61 
LCS_GDT     I       9     I       9      3    6   17     3    3    4    5    7    7    9   10   11   15   16   20   23   28   37   42   46   48   53   61 
LCS_GDT     T      10     T      10      3    6   17     3    3    4    5    7    8    9   12   18   18   23   27   32   36   39   42   46   51   56   61 
LCS_GDT     R      11     R      11      3    7   17     3    3    3    5    7    9   11   15   18   22   27   29   32   36   39   42   46   50   53   61 
LCS_GDT     G      12     G      12      3    7   17     3    3    4    5    7    9   11   12   20   22   27   29   31   36   39   42   46   50   53   61 
LCS_GDT     R      13     R      13      5    7   17     4    4    6    8    8    9   11   12   13   17   24   27   31   34   39   42   46   50   53   61 
LCS_GDT     A      14     A      14      5    7   17     4    4    6    8    8    9   11   12   16   19   25   27   31   34   37   41   45   50   53   61 
LCS_GDT     E      15     E      15      5    7   17     4    4    6    8    8    8   10   12   13   15   16   20   24   27   29   36   41   42   45   49 
LCS_GDT     G      16     G      16      5    7   17     4    4    6    8    8    8   10   12   13   15   16   20   24   28   30   34   42   46   50   53 
LCS_GDT     E      17     E      17      5    7   20     3    4    5    6    7   11   11   12   16   17   19   22   24   28   31   34   45   48   50   55 
LCS_GDT     A      18     A      18      5    7   20     3    4    6    8    8   11   11   12   16   23   27   31   34   41   43   47   50   56   60   66 
LCS_GDT     L      19     L      19      5    7   20     3    4    6    8    9   10   11   13   15   19   21   33   45   49   54   58   62   65   67   70 
LCS_GDT     V      20     V      20      4    7   20     3    4    4    6    9   10   11   13   18   23   28   35   45   48   54   57   62   65   67   70 
LCS_GDT     T      21     T      21      4    6   20     3    4    5    7    9   10   11   13   15   19   23   29   31   36   46   49   59   62   65   69 
LCS_GDT     K      22     K      22      4    6   20     1    4    5    6    9   10   11   13   19   23   27   31   34   41   43   46   51   58   63   69 
LCS_GDT     E      23     E      23      3    6   20     1    3    5    7    9   10   13   15   20   23   28   33   36   41   44   47   51   60   65   69 
LCS_GDT     Y      24     Y      24      3    6   20     3    3    5    7   11   12   16   23   28   33   38   45   48   51   54   58   62   65   67   70 
LCS_GDT     I      25     I      25      4    6   20     3    3    4    5    9   11   15   23   26   31   37   42   48   50   54   58   62   65   67   70 
LCS_GDT     S      26     S      26      4    6   20     3    3    5    7   11   12   12   14   16   19   24   29   34   36   43   48   54   62   67   69 
LCS_GDT     F      27     F      27      4    5   20     3    3    5    6   11   13   15   19   23   24   27   29   32   36   39   44   49   53   60   66 
LCS_GDT     L      28     L      28      4    5   20     3    3    4    8   10   13   15   18   23   24   27   29   32   36   39   44   48   53   56   61 
LCS_GDT     G      29     G      29      4    7   20     3    4    4    5    6    8   11   13   15   20   26   29   32   36   39   42   46   50   53   61 
LCS_GDT     G      30     G      30      4    7   20     3    4    4    5    7    8   10   13   15   20   26   29   32   36   39   42   46   50   53   61 
LCS_GDT     I      31     I      31      4    7   20     3    4    4    5    7    8   11   13   15   19   26   29   32   36   38   42   46   50   53   61 
LCS_GDT     D      32     D      32      4    7   20     3    4    4    5    6    6    8   11   14   17   26   29   32   36   38   42   46   50   53   61 
LCS_GDT     K      33     K      33      3    8   20     3    3    4    6    9   12   13   13   15   17   19   23   26   33   35   38   45   48   52   56 
LCS_GDT     E      34     E      34      4    8   20     3    3    5    6    9   12   13   13   15   17   19   20   24   27   29   35   37   39   42   45 
LCS_GDT     T      35     T      35      5    8   20     2    4    6    6    9   12   13   14   15   16   19   22   24   27   31   35   37   39   42   47 
LCS_GDT     G      36     G      36      5    9   20     3    4    6    7   11   12   13   14   18   24   28   31   34   40   42   46   53   57   60   64 
LCS_GDT     I      37     I      37      5    9   20     3    4    6    7   11   12   15   20   25   28   34   38   45   47   52   57   62   64   66   69 
LCS_GDT     V      38     V      38      5    9   20     3    4    6    7   11   12   16   20   26   32   36   42   46   50   54   58   62   65   67   70 
LCS_GDT     K      39     K      39      5    9   20     3    4    6    7   11   12   13   17   25   29   34   39   45   49   53   58   62   65   67   70 
LCS_GDT     E      40     E      40      5    9   20     3    4    6    7   11   12   16   20   26   32   37   42   47   50   54   58   62   65   67   70 
LCS_GDT     D      41     D      41      5    9   20     3    4    6    7   11   15   21   28   34   37   42   46   49   52   54   58   62   65   67   70 
LCS_GDT     C      42     C      42      3    9   20     3    3    4    7   14   21   26   29   34   37   43   46   50   52   55   58   62   65   67   70 
LCS_GDT     E      43     E      43      4    9   20     3    5    6    8   14   20   26   29   34   37   43   46   50   52   54   58   62   65   67   70 
LCS_GDT     I      44     I      44      4    9   20     3    4    6    8   13   20   26   29   34   37   42   46   50   52   54   58   62   65   67   70 
LCS_GDT     K      45     K      45      4    7   20     3    4    4    6    8   10   12   15   18   30   36   41   46   50   54   58   62   65   67   70 
LCS_GDT     G      46     G      46      4    7   20     3    4    4    8   12   14   17   20   23   29   35   40   45   49   54   58   62   65   67   70 
LCS_GDT     E      47     E      47      4    7   20     3    3    4    7   13   15   16   19   23   26   33   41   45   49   54   58   62   65   67   70 
LCS_GDT     S      48     S      48      4    7   20     3    3    6    7   11   12   16   20   25   29   35   41   45   49   54   58   62   65   67   70 
LCS_GDT     V      49     V      49      3    6   20     3    3    4    6   11   14   17   20   22   25   31   37   43   48   50   54   59   63   67   69 
LCS_GDT     A      50     A      50      3    6   20     3    4    4    5    9   12   15   19   20   24   26   29   32   36   39   42   54   58   61   64 
LCS_GDT     G      51     G      51      3    6   18     3    4    4    6    7   12   12   17   20   24   26   29   32   36   42   49   54   58   63   66 
LCS_GDT     R      52     R      52      4    6   23     0    4    4    6    7   12   16   20   24   27   36   42   46   51   54   58   62   65   67   70 
LCS_GDT     I      53     I      53      4    6   31     1    3    4    8   11   17   22   26   34   37   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     L      54     L      54      4    6   31     1    3    4    8   13   24   28   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     V      55     V      55      4    6   31     3    3    4   11   14   19   25   29   35   38   42   44   50   53   56   59   61   62   66   70 
LCS_GDT     F      56     F      56      3    6   48     3   12   14   16   21   26   29   32   36   39   42   45   50   53   56   59   61   63   66   70 
LCS_GDT     P      57     P      57      4    6   48     3    3    6   15   21   26   29   32   36   39   42   45   50   53   56   59   61   62   66   70 
LCS_GDT     G      58     G      58      4    6   48     3    3    7   14   21   25   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     G      59     G      59      4    6   48     3    3    4    7   10   15   23   29   35   38   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     K      60     K      60      4    6   48     3    3    4    5    5    8   13   20   24   38   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     G      61     G      61      3    3   48     3    3    3    9   17   24   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     S      62     S      62      4    6   48     3   12   14   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     T      63     T      63      4    6   48     3    3    4    7   11   21   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     V      64     V      64      4   12   48     3    3    6    9   14   21   26   30   34   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     G      65     G      65     10   12   48     9   10   10   10   14   21   26   29   34   37   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     S      66     S      66     10   12   48     4   10   10   10   11   13   18   22   29   33   36   43   47   51   54   58   62   65   67   70 
LCS_GDT     Y      67     Y      67     10   12   48     9   10   10   10   11   14   25   29   34   37   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     V      68     V      68     10   12   48     9   10   12   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     L      69     L      69     10   12   48     9   10   10   10   14   21   28   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     L      70     L      70     10   12   48     9   10   10   14   18   24   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     N      71     N      71     10   12   48     9   10   10   12   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     L      72     L      72     10   12   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     R      73     R      73     10   12   48     9   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     K      74     K      74     10   12   48     9   10   10   16   21   26   29   32   36   39   43   46   50   53   56   59   61   65   67   70 
LCS_GDT     N      75     N      75      3   12   48     3    3    4    6    8   13   18   26   31   34   41   44   50   53   56   59   61   62   64   66 
LCS_GDT     G      76     G      76      3   12   48     3    3    5    9   13   18   23   30   32   37   41   45   50   53   56   59   61   62   66   70 
LCS_GDT     V      77     V      77      4    8   48     3    3    4    6    7    9   14   20   26   33   39   43   47   53   56   59   61   62   66   70 
LCS_GDT     A      78     A      78      4    8   48     3    3    6    7    7    8   12   22   29   33   39   45   50   53   56   59   62   65   67   70 
LCS_GDT     P      79     P      79      6    8   48     3    6    6   12   17   24   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     K      80     K      80      6    8   48     9   13   15   16   21   26   28   32   36   39   42   46   50   53   56   59   62   65   67   70 
LCS_GDT     A      81     A      81      6    8   48     3   13   15   16   20   26   28   32   36   39   42   45   50   53   56   59   61   65   67   70 
LCS_GDT     I      82     I      82      6    8   48     3    6    6   15   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     I      83     I      83      6    8   48     3    6    6    8   13   15   19   25   35   38   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     N      84     N      84      6    8   48     1    6    6    8   13   15   20   24   34   38   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     K      85     K      85      5    7   48     1    4    6   10   13   15   17   20   23   26   32   38   44   50   53   58   62   65   67   70 
LCS_GDT     K      86     K      86      5    7   48     3    4    6    7   10   13   16   20   23   25   30   38   42   50   53   57   62   65   67   70 
LCS_GDT     T      87     T      87      5    7   48     3    4    6    8   10   13   20   24   33   38   43   46   50   53   56   58   62   65   67   70 
LCS_GDT     E      88     E      88      5   12   48     3    4    6    7   10   15   25   29   35   38   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     T      89     T      89     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     I      90     I      90     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     I      91     I      91     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     A      92     A      92     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     V      93     V      93     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     G      94     G      94     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     A      95     A      95     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     A      96     A      96     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     M      97     M      97     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     A      98     A      98     11   15   48    11   13   15   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     E      99     E      99     11   15   48     3    6   15   16   21   26   28   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     I     100     I     100      5   15   48     3    4    6   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     P     101     P     101      5   15   48     3    4   12   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     L     102     L     102      5   15   48     3    4   12   16   21   26   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     V     103     V     103      5   15   48     3    4    6   11   18   25   29   32   36   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     E     104     E     104      4    6   48     3    4    5   10   12   14   20   28   34   38   42   46   50   53   56   58   62   65   67   70 
LCS_GDT     V     105     V     105      4    6   28     3    4    6   10   12   14   18   20   24   30   35   41   46   50   53   58   62   65   67   70 
LCS_GDT     R     106     R     106      4    6   28     3    4    4    6    8   12   18   20   23   25   27   33   39   44   49   53   57   61   65   67 
LCS_GDT     D     107     D     107      4    9   23     3    4    7   10   13   15   18   20   23   25   27   29   34   38   43   48   52   58   63   67 
LCS_GDT     E     108     E     108      3    9   23     3    4    6    9   12   14   18   20   23   24   27   29   32   36   39   42   46   54   62   66 
LCS_GDT     K     109     K     109      7    9   23     6    6    6   10   13   15   18   20   23   25   27   29   34   36   39   44   50   56   62   67 
LCS_GDT     F     110     F     110      7    9   23     6    6    7   10   13   15   18   20   23   25   27   29   34   36   39   44   50   56   62   67 
LCS_GDT     F     111     F     111      7    9   23     6    6    6   10   13   15   18   20   23   25   27   29   34   36   39   45   51   58   62   67 
LCS_GDT     E     112     E     112      7    9   23     6    6    6   10   13   15   18   20   23   25   27   29   34   36   39   44   48   54   62   66 
LCS_GDT     A     113     A     113      7    9   23     6    6    7   10   13   15   18   20   23   25   27   29   34   36   39   44   48   53   60   65 
LCS_GDT     V     114     V     114      7    9   23     6    6    6   10   13   15   18   20   23   25   27   29   34   36   39   44   51   58   62   66 
LCS_GDT     K     115     K     115      7    9   23     3    4    7   10   13   15   18   20   23   25   27   29   34   37   40   45   53   59   62   66 
LCS_GDT     T     116     T     116      4    9   23     3    4    7   10   12   14   18   20   22   24   28   32   36   42   46   51   56   60   63   66 
LCS_GDT     G     117     G     117      4    9   23     3    4    7   10   11   15   18   20   23   26   35   40   44   48   51   55   59   61   64   67 
LCS_GDT     D     118     D     118      4    9   23     3    4    6   10   11   14   18   20   23   25   27   29   34   40   48   54   57   61   64   67 
LCS_GDT     R     119     R     119      4    9   23     3    4    7   10   12   14   18   20   23   24   27   37   47   48   54   59   61   62   66   70 
LCS_GDT     V     120     V     120      4    9   23     0    4    7   10   12   14   18   20   26   31   41   44   50   53   56   59   61   63   66   70 
LCS_GDT     V     121     V     121      3    6   23     2    3    4    6    7   11   15   16   29   33   41   44   50   53   56   59   61   65   67   70 
LCS_GDT     V     122     V     122      3    6   23     1    3    6   14   18   25   28   32   34   39   43   46   50   53   56   59   62   65   67   70 
LCS_GDT     N     123     N     123      3    6   23     3    3    8   13   14   21   26   31   34   36   42   45   50   53   56   59   61   63   67   70 
LCS_GDT     A     124     A     124      3    6   23     3    4    4    6   17   25   29   32   36   39   43   46   50   53   56   59   61   65   67   70 
LCS_GDT     D     125     D     125      3    4   23     3    4    4    6   10   19   28   31   36   39   42   45   49   53   56   59   61   62   66   70 
LCS_GDT     E     126     E     126      4    8   16     3    4    6   10   16   21   26   32   35   38   42   45   48   52   56   59   61   63   66   70 
LCS_GDT     G     127     G     127      4    8   16     3    3    4    8   11   20   24   29   35   38   41   43   47   52   56   59   61   63   66   70 
LCS_GDT     Y     128     Y     128      5    8   16     3    3    6   15   21   26   28   32   36   39   42   45   50   53   56   59   61   63   66   70 
LCS_GDT     V     129     V     129      5    8   16     3    4    5    7   21   26   28   32   36   39   42   45   50   53   56   59   61   63   66   70 
LCS_GDT     E     130     E     130      5    8   16     3    4    6    7    9   19   24   28   35   36   41   43   47   52   56   59   61   62   66   70 
LCS_GDT     L     131     L     131      5    8   16     3    4    6    7    9   11   13   15   16   35   36   39   44   51   52   57   61   62   63   66 
LCS_GDT     I     132     I     132      5    8   16     3    4    6    7    9   11   13   15   16   26   31   35   43   47   52   55   57   61   63   66 
LCS_GDT     E     133     E     133      4    8   16     0    4    6    7    9   11   13   15   16   26   31   31   41   45   48   55   57   60   61   64 
LCS_AVERAGE  LCS_A:  11.24  (   4.06    6.54   23.13 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     16     21     26     29     32     36     39     43     46     50     53     56     59     62     65     67     70 
GDT PERCENT_CA   8.33   9.85  11.36  12.12  15.91  19.70  21.97  24.24  27.27  29.55  32.58  34.85  37.88  40.15  42.42  44.70  46.97  49.24  50.76  53.03
GDT RMS_LOCAL    0.33   0.47   0.65   0.81   1.63   1.85   2.30   2.36   2.73   2.99   3.81   4.00   4.24   4.34   4.50   4.75   5.60   5.78   5.92   6.14
GDT RMS_ALL_CA  16.92  17.29  17.34  17.36  16.15  16.15  15.58  15.98  15.72  15.72  14.74  14.59  14.76  15.56  15.70  15.70  14.46  14.46  14.47  14.36

#      Molecule1      Molecule2       DISTANCE
LGA    V       2      V       2         26.808
LGA    K       3      K       3         22.337
LGA    F       4      F       4         20.706
LGA    A       5      A       5         21.786
LGA    C       6      C       6         16.370
LGA    R       7      R       7         16.322
LGA    A       8      A       8         18.316
LGA    I       9      I       9         17.765
LGA    T      10      T      10         19.118
LGA    R      11      R      11         24.408
LGA    G      12      G      12         25.429
LGA    R      13      R      13         22.875
LGA    A      14      A      14         19.110
LGA    E      15      E      15         21.329
LGA    G      16      G      16         18.354
LGA    E      17      E      17         18.059
LGA    A      18      A      18         14.801
LGA    L      19      L      19         15.562
LGA    V      20      V      20         17.352
LGA    T      21      T      21         21.551
LGA    K      22      K      22         22.072
LGA    E      23      E      23         19.720
LGA    Y      24      Y      24         13.652
LGA    I      25      I      25         14.108
LGA    S      26      S      26         17.052
LGA    F      27      F      27         19.360
LGA    L      28      L      28         23.998
LGA    G      29      G      29         28.368
LGA    G      30      G      30         30.989
LGA    I      31      I      31         28.912
LGA    D      32      D      32         32.935
LGA    K      33      K      33         30.756
LGA    E      34      E      34         31.789
LGA    T      35      T      35         30.401
LGA    G      36      G      36         25.239
LGA    I      37      I      37         22.448
LGA    V      38      V      38         18.688
LGA    K      39      K      39         20.295
LGA    E      40      E      40         18.712
LGA    D      41      D      41         16.260
LGA    C      42      C      42         12.671
LGA    E      43      E      43         16.192
LGA    I      44      I      44         16.816
LGA    K      45      K      45         23.220
LGA    G      46      G      46         26.252
LGA    E      47      E      47         24.828
LGA    S      48      S      48         22.401
LGA    V      49      V      49         20.360
LGA    A      50      A      50         22.871
LGA    G      51      G      51         19.167
LGA    R      52      R      52         14.427
LGA    I      53      I      53          8.234
LGA    L      54      L      54          5.375
LGA    V      55      V      55          5.148
LGA    F      56      F      56          1.554
LGA    P      57      P      57          3.201
LGA    G      58      G      58          3.669
LGA    G      59      G      59          7.497
LGA    K      60      K      60          7.601
LGA    G      61      G      61          3.906
LGA    S      62      S      62          2.324
LGA    T      63      T      63          4.109
LGA    V      64      V      64          5.706
LGA    G      65      G      65          6.222
LGA    S      66      S      66          8.123
LGA    Y      67      Y      67          6.003
LGA    V      68      V      68          2.874
LGA    L      69      L      69          3.641
LGA    L      70      L      70          3.658
LGA    N      71      N      71          2.673
LGA    L      72      L      72          0.958
LGA    R      73      R      73          0.739
LGA    K      74      K      74          2.616
LGA    N      75      N      75          8.664
LGA    G      76      G      76          7.382
LGA    V      77      V      77          9.821
LGA    A      78      A      78          9.131
LGA    P      79      P      79          5.345
LGA    K      80      K      80          2.210
LGA    A      81      A      81          3.192
LGA    I      82      I      82          2.922
LGA    I      83      I      83          7.022
LGA    N      84      N      84          9.257
LGA    K      85      K      85         14.672
LGA    K      86      K      86         15.776
LGA    T      87      T      87         10.132
LGA    E      88      E      88          7.510
LGA    T      89      T      89          1.459
LGA    I      90      I      90          1.255
LGA    I      91      I      91          1.663
LGA    A      92      A      92          1.361
LGA    V      93      V      93          0.592
LGA    G      94      G      94          0.623
LGA    A      95      A      95          0.662
LGA    A      96      A      96          0.860
LGA    M      97      M      97          1.060
LGA    A      98      A      98          0.881
LGA    E      99      E      99          2.327
LGA    I     100      I     100          2.227
LGA    P     101      P     101          2.363
LGA    L     102      L     102          2.764
LGA    V     103      V     103          5.403
LGA    E     104      E     104         10.923
LGA    V     105      V     105         17.490
LGA    R     106      R     106         20.257
LGA    D     107      D     107         26.858
LGA    E     108      E     108         29.814
LGA    K     109      K     109         27.587
LGA    F     110      F     110         22.576
LGA    F     111      F     111         21.269
LGA    E     112      E     112         26.879
LGA    A     113      A     113         26.055
LGA    V     114      V     114         19.995
LGA    K     115      K     115         21.607
LGA    T     116      T     116         20.103
LGA    G     117      G     117         15.533
LGA    D     118      D     118         13.907
LGA    R     119      R     119          9.550
LGA    V     120      V     120          7.978
LGA    V     121      V     121          8.078
LGA    V     122      V     122          7.246
LGA    N     123      N     123          8.699
LGA    A     124      A     124          5.566
LGA    D     125      D     125          4.497
LGA    E     126      E     126          3.727
LGA    G     127      G     127          5.480
LGA    Y     128      Y     128          1.713
LGA    V     129      V     129          2.701
LGA    E     130      E     130          5.904
LGA    L     131      L     131          8.261
LGA    I     132      I     132         10.176
LGA    E     133      E     133         11.258

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  132    4.0     32    2.36    22.727    19.221     1.302

LGA_LOCAL      RMSD =  2.357  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.066  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 12.685  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.161550 * X  +   0.416171 * Y  +   0.894820 * Z  +   2.696842
  Y_new =   0.271928 * X  +  -0.890401 * Y  +   0.365022 * Z  +   0.840007
  Z_new =   0.948661 * X  +   0.184357 * Y  +  -0.257012 * Z  +  -0.331334 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.519345   -0.622248  [ DEG:   144.3478    -35.6522 ]
  Theta =  -1.248974   -1.892618  [ DEG:   -71.5610   -108.4390 ]
  Phi   =   1.034733   -2.106860  [ DEG:    59.2858   -120.7142 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0357TS168_5                                  
REMARK     2: T0357.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0357TS168_5.T0357.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  132   4.0   32   2.36  19.221    12.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0357TS168_5
PFRMAT TS
TARGET T0357
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1       1.633 -11.192 -19.270  1.00 25.00           C
ATOM      2  CA  VAL     2       1.229 -10.272 -15.622  1.00 25.00           C
ATOM      3  CA  LYS     3       2.441  -7.170 -13.702  1.00 25.00           C
ATOM      4  CA  PHE     4       2.134  -5.557 -10.240  1.00 25.00           C
ATOM      5  CA  ALA     5      -0.921  -5.424  -8.013  1.00 25.00           C
ATOM      6  CA  CYS     6       0.298  -2.077  -6.662  1.00 25.00           C
ATOM      7  CA  ARG     7      -2.231   0.312  -5.065  1.00 25.00           C
ATOM      8  CA  ALA     8      -5.579  -1.354  -4.398  1.00 25.00           C
ATOM      9  CA  ILE     9      -4.084  -4.735  -3.354  1.00 25.00           C
ATOM     10  CA  THR    10      -5.379  -8.272  -2.732  1.00 25.00           C
ATOM     11  CA  ARG    11      -8.540 -10.380  -2.597  1.00 25.00           C
ATOM     12  CA  GLY    12     -10.899  -7.572  -1.784  1.00 25.00           C
ATOM     13  CA  ARG    13      -9.917  -4.507  -3.740  1.00 25.00           C
ATOM     14  CA  ALA    14      -8.109  -3.400  -0.579  1.00 25.00           C
ATOM     15  CA  GLU    15      -8.098  -1.628   2.788  1.00 25.00           C
ATOM     16  CA  GLY    16      -4.572  -0.979   3.906  1.00 25.00           C
ATOM     17  CA  GLU    17      -0.820  -1.010   4.754  1.00 25.00           C
ATOM     18  CA  ALA    18      -0.552   2.778   4.256  1.00 25.00           C
ATOM     19  CA  LEU    19       2.833   4.605   4.184  1.00 25.00           C
ATOM     20  CA  VAL    20       2.068   5.343   7.807  1.00 25.00           C
ATOM     21  CA  THR    21       3.866   5.282  11.221  1.00 25.00           C
ATOM     22  CA  LYS    22       1.969   3.777  14.194  1.00 25.00           C
ATOM     23  CA  GLU    23      -1.624   3.636  15.254  1.00 25.00           C
ATOM     24  CA  TYR    24      -3.239   5.897  12.593  1.00 25.00           C
ATOM     25  CA  ILE    25      -5.059   8.178  10.156  1.00 25.00           C
ATOM     26  CA  SER    26      -4.089  11.857  10.108  1.00 25.00           C
ATOM     27  CA  PHE    27      -0.569  10.605  10.391  1.00 25.00           C
ATOM     28  CA  LEU    28       0.229  12.109  13.772  1.00 25.00           C
ATOM     29  CA  GLY    29       3.382  11.423  15.837  1.00 25.00           C
ATOM     30  CA  GLY    30       6.453  12.709  13.961  1.00 25.00           C
ATOM     31  CA  ILE    31       5.766  11.640  10.316  1.00 25.00           C
ATOM     32  CA  ASP    32       2.987  14.130   9.532  1.00 25.00           C
ATOM     33  CA  LYS    33       2.161  13.303   5.911  1.00 25.00           C
ATOM     34  CA  GLU    34       5.051  11.857   3.945  1.00 25.00           C
ATOM     35  CA  THR    35       7.142  10.496   1.054  1.00 25.00           C
ATOM     36  CA  GLY    36       5.875  10.330  -2.513  1.00 25.00           C
ATOM     37  CA  ILE    37       3.380   7.772  -3.867  1.00 25.00           C
ATOM     38  CA  VAL    38      -0.448   7.413  -3.653  1.00 25.00           C
ATOM     39  CA  LYS    39      -2.493   6.379  -0.572  1.00 25.00           C
ATOM     40  CA  GLU    40      -5.405   8.817  -0.226  1.00 25.00           C
ATOM     41  CA  ASP    41      -9.126   9.019  -1.164  1.00 25.00           C
ATOM     42  CA  CYS    42      -7.873   8.805  -4.749  1.00 25.00           C
ATOM     43  CA  GLU    43      -7.166  12.542  -4.992  1.00 25.00           C
ATOM     44  CA  ILE    44      -4.096  11.739  -7.037  1.00 25.00           C
ATOM     45  CA  LYS    45      -4.134  15.295  -8.268  1.00 25.00           C
ATOM     46  CA  GLY    46      -0.855  14.761 -10.093  1.00 25.00           C
ATOM     47  CA  GLU    47       2.869  14.206  -9.880  1.00 25.00           C
ATOM     48  CA  SER    48       4.196  11.327  -7.707  1.00 25.00           C
ATOM     49  CA  VAL    49       1.994  12.631  -4.847  1.00 25.00           C
ATOM     50  CA  ALA    50       1.080  12.293  -1.169  1.00 25.00           C
ATOM     51  CA  GLY    51       1.737   9.049   0.762  1.00 25.00           C
ATOM     52  CA  ARG    52       4.513   6.501   0.196  1.00 25.00           C
ATOM     53  CA  ILE    53       1.815   4.009  -0.679  1.00 25.00           C
ATOM     54  CA  LEU    54      -0.872   1.301  -0.132  1.00 25.00           C
ATOM     55  CA  VAL    55      -4.138  -0.613  -0.434  1.00 25.00           C
ATOM     56  CA  PHE    56      -5.729   2.717   0.508  1.00 25.00           C
ATOM     57  CA  PRO    57      -6.239   4.112   4.064  1.00 25.00           C
ATOM     58  CA  GLY    58      -5.128   2.809   7.469  1.00 25.00           C
ATOM     59  CA  GLY    59      -2.084   1.345   9.180  1.00 25.00           C
ATOM     60  CA  LYS    60      -4.037  -1.891   9.456  1.00 25.00           C
ATOM     61  CA  GLY    61      -7.546  -2.117   8.035  1.00 25.00           C
ATOM     62  CA  SER    62      -8.218  -5.792   8.621  1.00 25.00           C
ATOM     63  CA  THR    63      -4.629  -7.042   8.921  1.00 25.00           C
ATOM     64  CA  VAL    64      -4.164  -5.744   5.406  1.00 25.00           C
ATOM     65  CA  GLY    65      -4.239  -5.911   1.580  1.00 25.00           C
ATOM     66  CA  SER    66      -0.549  -4.899   1.439  1.00 25.00           C
ATOM     67  CA  TYR    67       0.319  -7.610   4.002  1.00 25.00           C
ATOM     68  CA  VAL    68      -1.600 -10.207   1.943  1.00 25.00           C
ATOM     69  CA  LEU    69       0.272  -9.121  -1.216  1.00 25.00           C
ATOM     70  CA  LEU    70       3.614  -9.426   0.630  1.00 25.00           C
ATOM     71  CA  ASN    71       2.654 -12.933   1.836  1.00 25.00           C
ATOM     72  CA  LEU    72       1.719 -13.935  -1.740  1.00 25.00           C
ATOM     73  CA  ARG    73       5.077 -12.607  -3.016  1.00 25.00           C
ATOM     74  CA  LYS    74       6.919 -14.592  -0.308  1.00 25.00           C
ATOM     75  CA  ASN    75      10.630 -15.627  -0.286  1.00 25.00           C
ATOM     76  CA  GLY    76      11.070 -13.841  -3.600  1.00 25.00           C
ATOM     77  CA  VAL    77       9.792 -10.240  -3.207  1.00 25.00           C
ATOM     78  CA  ALA    78      10.457  -7.040  -5.233  1.00 25.00           C
ATOM     79  CA  PRO    79       7.215  -5.112  -5.306  1.00 25.00           C
ATOM     80  CA  LYS    80       3.394  -4.894  -5.134  1.00 25.00           C
ATOM     81  CA  ALA    81       1.934  -2.567  -2.551  1.00 25.00           C
ATOM     82  CA  ILE    82       3.685  -0.989   0.414  1.00 25.00           C
ATOM     83  CA  ILE    83       3.772  -0.340   4.177  1.00 25.00           C
ATOM     84  CA  ASN    84       5.138   0.903   7.539  1.00 25.00           C
ATOM     85  CA  LYS    85       8.656  -0.522   8.048  1.00 25.00           C
ATOM     86  CA  LYS    86       9.317  -2.954  10.902  1.00 25.00           C
ATOM     87  CA  THR    87       6.156  -1.480  12.461  1.00 25.00           C
ATOM     88  CA  GLU    88       3.454  -3.368  14.471  1.00 25.00           C
ATOM     89  CA  THR    89       0.495  -2.244  12.332  1.00 25.00           C
ATOM     90  CA  ILE    90       0.297  -5.974  11.491  1.00 25.00           C
ATOM     91  CA  ILE    91      -0.085  -5.140   7.772  1.00 25.00           C
ATOM     92  CA  ALA    92       2.955  -2.818   7.955  1.00 25.00           C
ATOM     93  CA  VAL    93       4.991  -5.578   9.659  1.00 25.00           C
ATOM     94  CA  GLY    94       3.954  -8.061   6.935  1.00 25.00           C
ATOM     95  CA  ALA    95       4.987  -5.558   4.227  1.00 25.00           C
ATOM     96  CA  ALA    96       8.375  -5.063   5.942  1.00 25.00           C
ATOM     97  CA  MET    97       8.874  -8.857   6.104  1.00 25.00           C
ATOM     98  CA  ALA    98       8.022  -9.153   2.382  1.00 25.00           C
ATOM     99  CA  GLU    99       7.730  -6.267  -0.107  1.00 25.00           C
ATOM    100  CA  ILE   100       8.276  -2.610  -0.998  1.00 25.00           C
ATOM    101  CA  PRO   101       8.489  -0.721   2.296  1.00 25.00           C
ATOM    102  CA  LEU   102       7.058   2.339   3.980  1.00 25.00           C
ATOM    103  CA  VAL   103       8.978   4.549   6.340  1.00 25.00           C
ATOM    104  CA  GLU   104      12.076   3.144   8.146  1.00 25.00           C
ATOM    105  CA  VAL   105      15.251   1.409   9.176  1.00 25.00           C
ATOM    106  CA  ARG   106      13.931  -1.745   7.519  1.00 25.00           C
ATOM    107  CA  ASP   107      17.125  -3.447   8.735  1.00 25.00           C
ATOM    108  CA  GLU   108      17.684  -5.125   5.444  1.00 25.00           C
ATOM    109  CA  LYS   109      17.293  -1.853   3.594  1.00 25.00           C
ATOM    110  CA  PHE   110      13.983  -3.161   2.183  1.00 25.00           C
ATOM    111  CA  PHE   111      13.355   0.206   0.468  1.00 25.00           C
ATOM    112  CA  GLU   112      16.875   0.122  -1.039  1.00 25.00           C
ATOM    113  CA  ALA   113      16.271  -3.436  -2.315  1.00 25.00           C
ATOM    114  CA  VAL   114      12.951  -2.339  -3.880  1.00 25.00           C
ATOM    115  CA  LYS   115      14.699   0.617  -5.573  1.00 25.00           C
ATOM    116  CA  THR   116      14.623   2.503  -8.850  1.00 25.00           C
ATOM    117  CA  GLY   117      10.845   1.870  -8.661  1.00 25.00           C
ATOM    118  CA  ASP   118       8.914  -0.464  -6.380  1.00 25.00           C
ATOM    119  CA  ARG   119       5.124  -0.468  -6.074  1.00 25.00           C
ATOM    120  CA  VAL   120       5.642   1.917  -3.229  1.00 25.00           C
ATOM    121  CA  VAL   121       8.042   3.879  -1.108  1.00 25.00           C
ATOM    122  CA  VAL   122       9.875   6.221   1.261  1.00 25.00           C
ATOM    123  CA  ASN   123      11.273   8.091   4.259  1.00 25.00           C
ATOM    124  CA  ALA   124      14.627   6.594   3.233  1.00 25.00           C
ATOM    125  CA  ASP   125      15.865   8.437   0.214  1.00 25.00           C
ATOM    126  CA  GLU   126      15.621   7.247  -3.381  1.00 25.00           C
ATOM    127  CA  GLY   127      12.506   4.999  -3.407  1.00 25.00           C
ATOM    128  CA  TYR   128      10.263   8.124  -3.490  1.00 25.00           C
ATOM    129  CA  VAL   129       7.792   6.189  -5.639  1.00 25.00           C
ATOM    130  CA  GLU   130       5.157   4.529  -7.816  1.00 25.00           C
ATOM    131  CA  LEU   131       1.615   3.508  -7.009  1.00 25.00           C
ATOM    132  CA  ILE   132       1.276   1.669 -10.312  1.00 25.00           C
ATOM    133  CA  GLU   133      -1.053   0.945 -13.229  1.00 25.00           C
ATOM    134  CA  LEU   134      -1.005   1.349 -16.998  1.00 25.00           C
ATOM    135  CA  GLU   135      -2.449   0.877 -20.474  1.00 25.00           C
ATOM    136  CA  HIS   136      -3.142   3.367 -23.325  1.00 25.00           C
ATOM    137  CA  HIS   137      -6.801   3.852 -24.242  1.00 25.00           C
ATOM    138  CA  HIS   138     -10.322   5.269 -23.859  1.00 25.00           C
ATOM    139  CA  HIS   139      -9.489   8.047 -26.290  1.00 25.00           C
ATOM    140  CA  HIS   140      -8.230  10.076 -29.286  1.00 25.00           C
ATOM    141  CA  HIS   141      -7.113   6.975 -31.099  1.00 25.00           C
TER
END
