
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  132 , name T0357TS393_3
# Molecule2: number of CA atoms  132 ( 2030),  selected  132 , name T0357.pdb
# PARAMETERS: T0357TS393_3.T0357.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        80 - 117         4.96    12.32
  LONGEST_CONTINUOUS_SEGMENT:    38        81 - 118         4.97    11.84
  LCS_AVERAGE:     19.99

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        84 - 104         1.85    12.69
  LCS_AVERAGE:      7.98

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    12        87 - 98          0.88    13.34
  LONGEST_CONTINUOUS_SEGMENT:    12        89 - 100         0.88    12.65
  LCS_AVERAGE:      4.27

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     V       2     V       2      4    7   12     4    4    4    5    6    7    9   10   10   13   13   15   18   22   26   31   32   36   37   43 
LCS_GDT     K       3     K       3      4    7   12     4    4    4    6    6    7    9   10   11   13   15   16   21   22   26   31   32   38   43   45 
LCS_GDT     F       4     F       4      4    7   12     4    4    5    7    7    8    8   10   11   12   15   16   18   21   26   27   29   36   37   38 
LCS_GDT     A       5     A       5      4    7   12     4    4    4    5    6    7    8   10   10   10   12   14   17   21   22   27   29   36   43   45 
LCS_GDT     C       6     C       6      3    7   12     3    3    4    5    6    7    8   10   10   17   18   18   18   21   24   28   31   38   43   45 
LCS_GDT     R       7     R       7      4    7   12     3    3    5    5    6    7    8   10   10   10   12   16   16   21   22   28   31   40   47   48 
LCS_GDT     A       8     A       8      4    7   16     3    3    5    5    6    7    8   15   16   17   18   20   25   37   44   53   61   74   83   90 
LCS_GDT     I       9     I       9      4    7   18     3    3    5    5    8   11   13   15   16   17   18   25   28   32   34   44   54   74   81   85 
LCS_GDT     T      10     T      10      4    7   18     3    3    5    7    9    9   12   13   16   20   23   28   34   47   52   61   70   79   87   92 
LCS_GDT     R      11     R      11      4    7   20     3    3    4    5    7    8   10   12   15   16   21   24   29   40   49   57   61   76   83   91 
LCS_GDT     G      12     G      12      4    8   21     3    3    4    5    7    8   10   12   15   20   23   30   41   47   55   61   70   79   87   92 
LCS_GDT     R      13     R      13      5    8   21     3    4    5    7    9   10   12   14   18   24   30   42   51   55   63   70   77   83   87   92 
LCS_GDT     A      14     A      14      5    8   21     3    4    6    7    9   11   16   20   23   30   40   46   52   58   64   71   77   83   87   92 
LCS_GDT     E      15     E      15      5    8   21     3    4    6    7    9   14   17   21   23   30   39   43   51   56   61   69   77   83   87   92 
LCS_GDT     G      16     G      16      5    8   21     3    5    6    7   12   14   17   21   24   31   35   43   51   56   61   68   77   83   87   92 
LCS_GDT     E      17     E      17      5    8   21     3    5    5    8    9   10   16   21   23   27   30   42   50   55   59   62   66   75   79   89 
LCS_GDT     A      18     A      18      4    8   21     3    4    7    8    9   10   14   17   20   27   30   37   38   42   56   62   64   70   78   84 
LCS_GDT     L      19     L      19      4    8   21     3    4    7    8    9   14   16   21   24   31   35   42   51   55   59   62   70   75   80   90 
LCS_GDT     V      20     V      20      4    8   21     3    4    7    8    9   15   16   21   24   31   41   46   52   58   63   69   76   83   87   92 
LCS_GDT     T      21     T      21      4    8   21     3    4    7    8   11   15   18   27   34   38   45   50   54   58   63   69   77   83   87   92 
LCS_GDT     K      22     K      22      4    8   21     3    4    7    9   10   23   27   31   36   42   47   51   54   58   63   69   77   83   87   92 
LCS_GDT     E      23     E      23      3    8   21     4    4   11   16   18   23   27   31   36   42   47   51   54   58   63   69   77   83   87   92 
LCS_GDT     Y      24     Y      24      3    8   21     4    4    4    5   15   16   18   23   26   29   37   48   51   58   62   68   77   83   87   92 
LCS_GDT     I      25     I      25      3    8   21     4    4    5    7    9   10   14   18   21   27   37   47   50   54   61   68   76   83   87   92 
LCS_GDT     S      26     S      26      6    8   21     4    6    6    7    9    9   10   13   15   19   27   27   32   43   51   59   71   82   87   92 
LCS_GDT     F      27     F      27      6    8   21     4    6    6    7    9   10   14   20   23   27   32   43   52   59   64   71   77   83   87   92 
LCS_GDT     L      28     L      28      6    8   21     4    6    6    7    9   11   14   18   34   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     G      29     G      29      6    8   21     4    6    6    7    9    9   16   28   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     G      30     G      30      6    8   21     4    6    6    7    9    9   15   18   35   42   47   51   54   58   63   71   77   83   87   92 
LCS_GDT     I      31     I      31      6    8   21     3    6    6    7   17   22   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     D      32     D      32      4    7   21     3    4    7   15   19   21   25   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     K      33     K      33      4    6   21     3    4    4    6   12   14   17   21   22   27   32   38   45   52   60   71   76   83   87   92 
LCS_GDT     E      34     E      34      4    6   15     3    4    4    5    6    7   12   14   18   20   27   31   42   44   53   60   69   75   84   92 
LCS_GDT     T      35     T      35      4    7   15     3    4    4    7    9   12   14   16   18   19   27   31   42   43   56   61   72   77   85   91 
LCS_GDT     G      36     G      36      4    7   15     3    4    4    5    9   12   14   16   18   33   38   45   53   58   63   71   77   83   87   92 
LCS_GDT     I      37     I      37      4    8   15     3    4    4    7   10   17   20   25   31   38   44   51   54   59   64   71   77   83   87   92 
LCS_GDT     V      38     V      38      4    8   15     3    4    4    7   11   17   21   24   27   34   37   47   52   59   64   71   77   83   87   92 
LCS_GDT     K      39     K      39      4    8   15     3    4    4    4    8   12   14   15   18   19   24   31   42   49   54   60   68   78   83   89 
LCS_GDT     E      40     E      40      4    8   15     3    4    4    7    9   14   14   16   22   26   33   40   46   51   64   71   76   83   87   92 
LCS_GDT     D      41     D      41      4    8   15     3    4    4    7    9   14   14   16   27   29   33   40   50   59   64   71   76   83   87   92 
LCS_GDT     C      42     C      42      4    8   15     3    4    4    5    9   14   20   22   28   32   35   42   50   59   64   71   76   82   87   92 
LCS_GDT     E      43     E      43      4    8   15     3    4    4    7   12   17   21   24   28   34   37   42   50   59   64   71   77   83   87   92 
LCS_GDT     I      44     I      44      4    8   15     4    4    5    7   12   16   21   24   28   34   37   42   50   59   64   71   77   83   87   92 
LCS_GDT     K      45     K      45      4    8   15     4    4    6    7    9   11   15   17   19   24   30   39   43   49   53   57   64   71   76   82 
LCS_GDT     G      46     G      46      4    8   22     4    4    6    7    9   11   13   15   17   23   26   34   39   45   51   57   61   68   72   76 
LCS_GDT     E      47     E      47      4    8   22     4    4    6    7    9   11   13   18   25   29   34   40   46   48   54   60   65   69   72   76 
LCS_GDT     S      48     S      48      4    8   22     3    4    6    7    9   11   15   21   25   29   34   40   46   49   54   60   66   72   74   77 
LCS_GDT     V      49     V      49      4    8   22     3    4    6    7    9   11   13   18   25   29   34   41   46   52   56   62   69   76   83   88 
LCS_GDT     A      50     A      50      4    8   22     3    4    6    7    9   13   17   23   26   31   36   41   46   50   54   61   66   72   74   79 
LCS_GDT     G      51     G      51      4    8   22     3    4    5    6    8   10   15   19   25   30   34   39   47   50   54   60   65   72   74   76 
LCS_GDT     R      52     R      52      4    9   22     3    6    7    9   11   17   20   28   36   42   47   51   54   58   62   68   76   83   87   92 
LCS_GDT     I      53     I      53      4    9   22     3    6    7    9   11   17   21   29   36   42   47   51   54   58   63   71   77   83   87   92 
LCS_GDT     L      54     L      54      4    9   22     3    6    7    9   11   18   24   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     V      55     V      55      4    9   23     3    5    7    8   11   15   18   27   34   39   47   51   54   58   63   71   77   83   87   92 
LCS_GDT     F      56     F      56      5    9   23     3    4    7    9   13   20   27   31   36   42   47   51   54   58   64   71   77   83   87   92 
LCS_GDT     P      57     P      57      5    9   23     3    6    7    9   11   17   21   29   36   42   47   51   54   58   63   71   77   83   87   92 
LCS_GDT     G      58     G      58      5    9   23     3    4    7    9   11   17   21   31   36   42   47   51   54   58   64   71   77   83   87   92 
LCS_GDT     G      59     G      59      5    9   23     3    4    7    9   12   15   18   25   34   38   47   51   54   58   63   71   77   83   87   92 
LCS_GDT     K      60     K      60      5    9   23     3    4    7    8   12   13   16   20   23   31   36   39   46   55   58   64   68   75   80   86 
LCS_GDT     G      61     G      61      4    5   32     3    4    4    9   11   17   20   25   30   37   47   51   54   58   63   71   77   83   87   92 
LCS_GDT     S      62     S      62      4    5   32     3    4   10   12   13   17   21   24   28   36   45   51   54   59   64   71   77   83   87   92 
LCS_GDT     T      63     T      63      4    4   32     3    4    4    6    9   12   20   22   27   31   36   43   47   55   60   67   76   83   87   92 
LCS_GDT     V      64     V      64      4   12   32     3    4    6   12   13   17   21   25   32   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     G      65     G      65     10   12   32     9   10   10   10   11   15   20   25   27   42   47   51   54   58   64   71   77   83   87   92 
LCS_GDT     S      66     S      66     10   12   32     4   10   10   10   11   17   20   25   32   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     Y      67     Y      67     10   12   32     9   10   11   16   19   22   25   29   36   41   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     V      68     V      68     10   12   32     9   10   10   10   18   23   27   28   34   39   45   51   54   59   64   71   77   83   87   92 
LCS_GDT     L      69     L      69     10   12   32     9   10   10   10   14   15   16   21   25   31   44   50   54   59   64   71   77   83   87   92 
LCS_GDT     L      70     L      70     10   12   32     9   10   10   10   11   21   27   28   33   38   45   51   54   59   64   71   77   83   87   92 
LCS_GDT     N      71     N      71     10   12   32     9   10   10   10   11   12   13   17   20   31   35   42   51   55   59   62   68   76   81   88 
LCS_GDT     L      72     L      72     10   12   32     9   10   10   10   11   14   16   21   24   31   35   42   51   55   59   62   65   70   79   83 
LCS_GDT     R      73     R      73     10   12   32     9   10   10   10   11   14   16   21   25   31   35   42   51   55   59   62   68   76   81   88 
LCS_GDT     K      74     K      74     10   12   32     9   10   10   10   11   12   16   17   20   25   30   37   40   43   53   60   62   68   77   83 
LCS_GDT     N      75     N      75      3   12   32     3    4    6   10   11   12   13   17   19   22   27   37   38   41   44   46   50   55   60   64 
LCS_GDT     G      76     G      76      4    6   32     3    3    5    7   10   11   13   17   19   22   27   30   35   40   42   46   49   53   58   64 
LCS_GDT     V      77     V      77      4    6   32     3    3    6    7    9   10   12   14   16   22   27   30   34   39   42   46   49   52   56   61 
LCS_GDT     A      78     A      78      4    7   32     3    4    6    7   12   13   14   17   20   25   28   32   35   43   45   52   57   65   71   77 
LCS_GDT     P      79     P      79      4    7   33     3    4    5    7   12   13   14   19   25   30   35   38   41   46   51   59   67   73   80   88 
LCS_GDT     K      80     K      80      5    7   38     3    4    6    7   12   13   15   20   23   30   35   38   46   50   55   62   68   75   82   88 
LCS_GDT     A      81     A      81      5    8   38     3    4    5    7   12   17   21   24   28   32   42   49   53   59   64   71   77   83   87   92 
LCS_GDT     I      82     I      82      5    8   38     3    6    6    7   12   17   21   25   28   38   45   51   54   59   64   71   77   83   87   92 
LCS_GDT     I      83     I      83      5   18   38     3    6    6    9   12   17   24   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     N      84     N      84      5   21   38     3    8   12   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     K      85     K      85      4   21   38     3    4   12   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     K      86     K      86      4   21   38     3    4    7   14   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     T      87     T      87     12   21   38     3    4   12   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     E      88     E      88     12   21   38     3    4   11   12   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     T      89     T      89     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     I      90     I      90     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     I      91     I      91     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     A      92     A      92     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     V      93     V      93     12   21   38    10   10   13   16   19   23   27   31   36   41   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     G      94     G      94     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     A      95     A      95     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     A      96     A      96     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     M      97     M      97     12   21   38    10   10   13   16   19   23   27   31   36   41   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     A      98     A      98     12   21   38    10   10   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     E      99     E      99     12   21   38     3    4   13   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     I     100     I     100     12   21   38     3    4   11   16   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     P     101     P     101      4   21   38     3    4    6   12   17   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     L     102     L     102      4   21   38     3    9   13   14   18   23   27   29   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     V     103     V     103      4   21   38     3   10   13   16   18   23   27   31   36   42   47   51   54   59   64   70   77   83   87   92 
LCS_GDT     E     104     E     104      4   21   38     3    4   12   14   19   23   27   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     V     105     V     105      4   12   38     3    4   10   12   14   15   21   29   34   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     R     106     R     106      4   12   38     3    5   10   12   14   17   25   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     D     107     D     107      4   12   38     3    4   10   12   14   15   20   27   34   38   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     E     108     E     108      4   12   38     3    5    5    7   12   14   19   21   23   29   34   42   50   59   64   71   77   83   87   92 
LCS_GDT     K     109     K     109      7   12   38     6    6   10   12   14   15   19   21   25   32   36   44   51   59   64   71   77   83   87   92 
LCS_GDT     F     110     F     110      7   12   38     6    6   10   12   14   15   19   21   25   32   36   42   51   59   64   71   77   83   87   92 
LCS_GDT     F     111     F     111      7   12   38     6    6   10   12   14   15   19   21   25   32   35   42   50   59   64   71   77   83   87   92 
LCS_GDT     E     112     E     112      7   12   38     6    6   10   12   14   15   19   21   24   31   35   42   50   59   64   71   77   83   87   92 
LCS_GDT     A     113     A     113      7   12   38     6    6   10   12   14   15   19   21   23   30   35   40   50   59   64   71   77   83   87   92 
LCS_GDT     V     114     V     114      7   12   38     6    6   10   12   14   15   19   21   25   31   35   42   50   59   64   71   77   83   87   92 
LCS_GDT     K     115     K     115      7   12   38     3    4    8   12   14   15   19   21   25   32   35   42   50   59   64   71   77   83   87   92 
LCS_GDT     T     116     T     116      4   12   38     3    4    8   12   14   15   17   21   27   32   35   42   50   59   64   71   76   83   87   92 
LCS_GDT     G     117     G     117      3    5   38     3    3    5    6   12   14   19   21   23   28   34   42   50   59   64   71   77   83   87   92 
LCS_GDT     D     118     D     118      3    5   38     3    3    3    5    6   10   13   16   21   26   35   45   52   57   63   70   77   83   87   92 
LCS_GDT     R     119     R     119      4    6   22     3    4    5    7    9   15   16   21   24   31   39   46   52   56   61   66   73   81   87   92 
LCS_GDT     V     120     V     120      4    6   22     3    4    5    7    9   15   16   21   24   31   40   46   52   58   63   69   77   83   87   92 
LCS_GDT     V     121     V     121      4    6   22     3    4    5    5    9   13   16   21   24   31   44   50   54   58   63   70   77   83   87   92 
LCS_GDT     V     122     V     122      4    6   22     1    4    5    6   11   17   25   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     N     123     N     123      3    6   22     2    3    5    7   10   18   25   31   36   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     A     124     A     124      5    6   16     4    6    6    7    9   14   19   28   34   42   47   51   54   59   64   71   77   83   87   92 
LCS_GDT     D     125     D     125      5    6   16     4    6    6    7    9   15   19   28   34   42   47   50   54   58   63   68   75   83   87   90 
LCS_GDT     E     126     E     126      5    8   16     4    6    6    7    9   11   14   17   22   26   31   40   51   55   59   62   70   75   82   90 
LCS_GDT     G     127     G     127      5    8   16     4    6    6    7    9   11   14   17   22   26   31   40   51   54   59   62   70   74   82   90 
LCS_GDT     Y     128     Y     128      5    8   16     3    6    6    7    9   11   14   17   20   26   30   40   45   54   59   62   70   74   84   92 
LCS_GDT     V     129     V     129      4    8   16     3    4    4    7    9   11   14   17   22   26   31   40   45   54   59   61   70   73   78   87 
LCS_GDT     E     130     E     130      4    8   16     3    4    4    7    9   11   14   17   22   26   30   35   40   45   54   56   62   66   68   71 
LCS_GDT     L     131     L     131      4    8   16     3    4    4    7    9   11   14   17   20   26   30   35   40   42   49   51   59   65   67   71 
LCS_GDT     I     132     I     132      4    8   16     0    4    4    7    9   11   14   17   20   22   30   35   40   42   47   51   55   60   65   68 
LCS_GDT     E     133     E     133      3    8   16     0    3    3    7    9   11   14   16   22   26   30   37   40   45   49   51   55   65   65   68 
LCS_AVERAGE  LCS_A:  10.75  (   4.27    7.98   19.99 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     10     13     16     19     23     27     31     36     42     47     51     54     59     64     71     77     83     87     92 
GDT PERCENT_CA   7.58   7.58   9.85  12.12  14.39  17.42  20.45  23.48  27.27  31.82  35.61  38.64  40.91  44.70  48.48  53.79  58.33  62.88  65.91  69.70
GDT RMS_LOCAL    0.27   0.27   0.82   1.26   1.59   1.94   2.23   2.93   3.17   3.77   3.87   4.11   4.25   5.23   5.45   5.85   6.16   6.42   6.58   6.94
GDT RMS_ALL_CA  13.17  13.17  13.00  12.73  12.74  13.00  12.92  12.51  12.66  12.61  12.65  12.60  12.45  11.82  11.73  11.63  11.37  11.37  11.39  11.33

#      Molecule1      Molecule2       DISTANCE
LGA    V       2      V       2         38.903
LGA    K       3      K       3         32.981
LGA    F       4      F       4         29.854
LGA    A       5      A       5         26.020
LGA    C       6      C       6         22.570
LGA    R       7      R       7         18.534
LGA    A       8      A       8         14.836
LGA    I       9      I       9         14.923
LGA    T      10      T      10         13.038
LGA    R      11      R      11         17.265
LGA    G      12      G      12         15.719
LGA    R      13      R      13         13.547
LGA    A      14      A      14         10.324
LGA    E      15      E      15         12.897
LGA    G      16      G      16         11.665
LGA    E      17      E      17         12.138
LGA    A      18      A      18         12.227
LGA    L      19      L      19         10.290
LGA    V      20      V      20          6.970
LGA    T      21      T      21          5.607
LGA    K      22      K      22          3.428
LGA    E      23      E      23          3.748
LGA    Y      24      Y      24          8.440
LGA    I      25      I      25          8.680
LGA    S      26      S      26         10.089
LGA    F      27      F      27          7.677
LGA    L      28      L      28          6.240
LGA    G      29      G      29          4.553
LGA    G      30      G      30          5.071
LGA    I      31      I      31          2.454
LGA    D      32      D      32          2.976
LGA    K      33      K      33          9.857
LGA    E      34      E      34         11.604
LGA    T      35      T      35          9.735
LGA    G      36      G      36          7.433
LGA    I      37      I      37          7.102
LGA    V      38      V      38          9.700
LGA    K      39      K      39         13.486
LGA    E      40      E      40         13.010
LGA    D      41      D      41         15.152
LGA    C      42      C      42         15.986
LGA    E      43      E      43         14.001
LGA    I      44      I      44         13.282
LGA    K      45      K      45         19.070
LGA    G      46      G      46         20.668
LGA    E      47      E      47         17.628
LGA    S      48      S      48         15.558
LGA    V      49      V      49         12.012
LGA    A      50      A      50         13.011
LGA    G      51      G      51         11.558
LGA    R      52      R      52          4.962
LGA    I      53      I      53          4.248
LGA    L      54      L      54          3.205
LGA    V      55      V      55          5.167
LGA    F      56      F      56          2.400
LGA    P      57      P      57          4.219
LGA    G      58      G      58          3.964
LGA    G      59      G      59          5.097
LGA    K      60      K      60          8.068
LGA    G      61      G      61          6.361
LGA    S      62      S      62          7.077
LGA    T      63      T      63          9.458
LGA    V      64      V      64          6.005
LGA    G      65      G      65          5.303
LGA    S      66      S      66          5.360
LGA    Y      67      Y      67          4.198
LGA    V      68      V      68          5.690
LGA    L      69      L      69          6.846
LGA    L      70      L      70          6.143
LGA    N      71      N      71         12.501
LGA    L      72      L      72         15.398
LGA    R      73      R      73         14.142
LGA    K      74      K      74         17.361
LGA    N      75      N      75         23.958
LGA    G      76      G      76         23.840
LGA    V      77      V      77         21.989
LGA    A      78      A      78         17.647
LGA    P      79      P      79         14.791
LGA    K      80      K      80         13.765
LGA    A      81      A      81          8.063
LGA    I      82      I      82          6.136
LGA    I      83      I      83          3.393
LGA    N      84      N      84          1.969
LGA    K      85      K      85          1.728
LGA    K      86      K      86          2.877
LGA    T      87      T      87          2.341
LGA    E      88      E      88          3.623
LGA    T      89      T      89          3.848
LGA    I      90      I      90          2.973
LGA    I      91      I      91          2.345
LGA    A      92      A      92          3.554
LGA    V      93      V      93          3.866
LGA    G      94      G      94          2.761
LGA    A      95      A      95          2.361
LGA    A      96      A      96          3.341
LGA    M      97      M      97          3.478
LGA    A      98      A      98          2.560
LGA    E      99      E      99          1.445
LGA    I     100      I     100          2.594
LGA    P     101      P     101          3.091
LGA    L     102      L     102          4.114
LGA    V     103      V     103          3.981
LGA    E     104      E     104          3.972
LGA    V     105      V     105          4.607
LGA    R     106      R     106          3.264
LGA    D     107      D     107          6.189
LGA    E     108      E     108         12.428
LGA    K     109      K     109         11.187
LGA    F     110      F     110         10.622
LGA    F     111      F     111         12.375
LGA    E     112      E     112         15.668
LGA    A     113      A     113         16.189
LGA    V     114      V     114         15.196
LGA    K     115      K     115         16.282
LGA    T     116      T     116         16.349
LGA    G     117      G     117         13.910
LGA    D     118      D     118         11.883
LGA    R     119      R     119         10.234
LGA    V     120      V     120          9.170
LGA    V     121      V     121          6.655
LGA    V     122      V     122          3.956
LGA    N     123      N     123          3.713
LGA    A     124      A     124          4.929
LGA    D     125      D     125          5.940
LGA    E     126      E     126         12.364
LGA    G     127      G     127         12.417
LGA    Y     128      Y     128         14.336
LGA    V     129      V     129         15.338
LGA    E     130      E     130         19.002
LGA    L     131      L     131         19.530
LGA    I     132      I     132         23.296
LGA    E     133      E     133         25.817

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  132    4.0     31    2.93    24.242    20.116     1.023

LGA_LOCAL      RMSD =  2.929  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 12.502  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 11.240  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.005913 * X  +  -0.195176 * Y  +   0.980750 * Z  +   2.038525
  Y_new =   0.354916 * X  +   0.916506 * Y  +   0.184530 * Z  +  -4.278426
  Z_new =  -0.934879 * X  +   0.349175 * Y  +   0.063852 * Z  +  -2.295403 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.389929   -1.751663  [ DEG:    79.6371   -100.3629 ]
  Theta =   1.207919    1.933673  [ DEG:    69.2087    110.7913 ]
  Phi   =   1.587454   -1.554139  [ DEG:    90.9544    -89.0456 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0357TS393_3                                  
REMARK     2: T0357.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0357TS393_3.T0357.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  132   4.0   31   2.93  20.116    11.24
REMARK  ---------------------------------------------------------- 
MOLECULE T0357TS393_3
PFRMAT TS
TARGET T0357
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1       4.008 -26.306  -1.563  1.00 25.00           C
ATOM      2  CA  VAL     2       4.101 -22.517  -1.766  1.00 25.00           C
ATOM      3  CA  LYS     3       3.693 -18.893  -2.781  1.00 25.00           C
ATOM      4  CA  PHE     4       3.355 -15.931  -0.374  1.00 25.00           C
ATOM      5  CA  ALA     5       2.189 -12.439  -1.399  1.00 25.00           C
ATOM      6  CA  CYS     6      -1.179 -10.551  -1.436  1.00 25.00           C
ATOM      7  CA  ARG     7       0.663  -7.900   0.591  1.00 25.00           C
ATOM      8  CA  ALA     8       3.887  -8.315   2.571  1.00 25.00           C
ATOM      9  CA  ILE     9       6.126 -11.174   1.510  1.00 25.00           C
ATOM     10  CA  THR    10       9.591 -12.755   1.774  1.00 25.00           C
ATOM     11  CA  ARG    11       9.112 -16.458   1.131  1.00 25.00           C
ATOM     12  CA  GLY    12      11.420 -16.245  -1.908  1.00 25.00           C
ATOM     13  CA  ARG    13      12.724 -12.628  -2.141  1.00 25.00           C
ATOM     14  CA  ALA    14      10.129  -9.834  -2.590  1.00 25.00           C
ATOM     15  CA  GLU    15       6.543 -10.439  -3.740  1.00 25.00           C
ATOM     16  CA  GLY    16       4.787  -7.327  -2.327  1.00 25.00           C
ATOM     17  CA  GLU    17       1.729  -5.065  -2.376  1.00 25.00           C
ATOM     18  CA  ALA    18       0.602  -2.707   0.398  1.00 25.00           C
ATOM     19  CA  LEU    19      -2.808  -4.027  -0.539  1.00 25.00           C
ATOM     20  CA  VAL    20      -5.354  -2.092  -2.524  1.00 25.00           C
ATOM     21  CA  THR    21      -7.838  -0.343  -0.257  1.00 25.00           C
ATOM     22  CA  LYS    22     -10.695   1.311  -2.078  1.00 25.00           C
ATOM     23  CA  GLU    23     -13.483  -1.210  -1.274  1.00 25.00           C
ATOM     24  CA  TYR    24     -13.187  -2.181  -4.976  1.00 25.00           C
ATOM     25  CA  ILE    25     -13.068  -5.967  -5.328  1.00 25.00           C
ATOM     26  CA  SER    26     -15.235  -5.884  -2.168  1.00 25.00           C
ATOM     27  CA  PHE    27     -11.947  -6.719  -0.433  1.00 25.00           C
ATOM     28  CA  LEU    28     -13.645  -8.431   2.474  1.00 25.00           C
ATOM     29  CA  GLY    29     -12.877 -12.036   1.350  1.00 25.00           C
ATOM     30  CA  GLY    30     -12.515 -13.168  -2.257  1.00 25.00           C
ATOM     31  CA  ILE    31      -8.799 -12.407  -2.588  1.00 25.00           C
ATOM     32  CA  ASP    32      -7.915 -13.279  -6.239  1.00 25.00           C
ATOM     33  CA  LYS    33      -8.728 -10.068  -8.123  1.00 25.00           C
ATOM     34  CA  GLU    34      -8.227  -7.759  -5.165  1.00 25.00           C
ATOM     35  CA  THR    35      -4.887  -7.688  -3.377  1.00 25.00           C
ATOM     36  CA  GLY    36      -2.957  -5.385  -5.689  1.00 25.00           C
ATOM     37  CA  ILE    37      -2.560  -6.244  -9.351  1.00 25.00           C
ATOM     38  CA  VAL    38      -3.024  -2.708 -10.700  1.00 25.00           C
ATOM     39  CA  LYS    39      -3.866  -0.451  -7.791  1.00 25.00           C
ATOM     40  CA  GLU    40      -6.713   1.774  -9.124  1.00 25.00           C
ATOM     41  CA  ASP    41      -5.247   2.763 -12.477  1.00 25.00           C
ATOM     42  CA  CYS    42      -1.619   2.347 -13.672  1.00 25.00           C
ATOM     43  CA  GLU    43      -3.193   1.708 -17.120  1.00 25.00           C
ATOM     44  CA  ILE    44      -0.272  -0.631 -17.588  1.00 25.00           C
ATOM     45  CA  LYS    45       0.829   0.846 -20.948  1.00 25.00           C
ATOM     46  CA  GLY    46       0.503   4.599 -21.131  1.00 25.00           C
ATOM     47  CA  GLU    47       2.321   5.141 -17.853  1.00 25.00           C
ATOM     48  CA  SER    48       4.163   2.851 -15.412  1.00 25.00           C
ATOM     49  CA  VAL    49       6.070   0.327 -13.242  1.00 25.00           C
ATOM     50  CA  ALA    50       5.666   3.045 -10.575  1.00 25.00           C
ATOM     51  CA  GLY    51       2.417   4.851  -9.748  1.00 25.00           C
ATOM     52  CA  ARG    52       1.220   1.399  -8.632  1.00 25.00           C
ATOM     53  CA  ILE    53       0.543   2.822  -5.107  1.00 25.00           C
ATOM     54  CA  LEU    54      -1.493   1.111  -2.366  1.00 25.00           C
ATOM     55  CA  VAL    55      -3.220   1.220   1.042  1.00 25.00           C
ATOM     56  CA  PHE    56      -5.646   4.146   1.209  1.00 25.00           C
ATOM     57  CA  PRO    57      -6.871   3.350   4.722  1.00 25.00           C
ATOM     58  CA  GLY    58      -5.772  -0.154   5.588  1.00 25.00           C
ATOM     59  CA  GLY    59      -5.337  -3.767   6.534  1.00 25.00           C
ATOM     60  CA  LYS    60      -6.537  -7.175   7.870  1.00 25.00           C
ATOM     61  CA  GLY    61      -9.479  -7.237   5.527  1.00 25.00           C
ATOM     62  CA  SER    62      -8.153  -5.230   2.586  1.00 25.00           C
ATOM     63  CA  THR    63      -5.146  -7.559   2.930  1.00 25.00           C
ATOM     64  CA  VAL    64      -4.075 -10.864   4.305  1.00 25.00           C
ATOM     65  CA  GLY    65      -1.841 -13.821   5.268  1.00 25.00           C
ATOM     66  CA  SER    66       1.178 -12.093   3.666  1.00 25.00           C
ATOM     67  CA  TYR    67       0.391  -8.878   5.591  1.00 25.00           C
ATOM     68  CA  VAL    68       0.140 -10.864   8.855  1.00 25.00           C
ATOM     69  CA  LEU    69       3.510 -12.532   8.128  1.00 25.00           C
ATOM     70  CA  LEU    70       5.085  -9.109   7.448  1.00 25.00           C
ATOM     71  CA  ASN    71       3.663  -7.772  10.743  1.00 25.00           C
ATOM     72  CA  LEU    72       5.077 -10.802  12.611  1.00 25.00           C
ATOM     73  CA  ARG    73       8.503 -10.228  10.998  1.00 25.00           C
ATOM     74  CA  LYS    74       8.395  -6.540  12.023  1.00 25.00           C
ATOM     75  CA  ASN    75      10.723  -4.861  14.480  1.00 25.00           C
ATOM     76  CA  GLY    76      12.930  -2.628  12.372  1.00 25.00           C
ATOM     77  CA  VAL    77       9.909  -1.972  10.104  1.00 25.00           C
ATOM     78  CA  ALA    78      12.416  -2.218   7.269  1.00 25.00           C
ATOM     79  CA  PRO    79      12.850  -1.499   3.560  1.00 25.00           C
ATOM     80  CA  LYS    80      11.914   1.985   4.582  1.00 25.00           C
ATOM     81  CA  ALA    81       8.569   1.681   2.899  1.00 25.00           C
ATOM     82  CA  ILE    82       4.931   2.761   3.126  1.00 25.00           C
ATOM     83  CA  ILE    83       1.217   3.310   2.527  1.00 25.00           C
ATOM     84  CA  ASN    84      -0.820   5.520   0.179  1.00 25.00           C
ATOM     85  CA  LYS    85      -2.643   8.285   1.931  1.00 25.00           C
ATOM     86  CA  LYS    86      -0.868   7.336   5.149  1.00 25.00           C
ATOM     87  CA  THR    87      -2.719   4.668   7.199  1.00 25.00           C
ATOM     88  CA  GLU    88      -3.763   2.698  10.334  1.00 25.00           C
ATOM     89  CA  THR    89      -0.100   1.679  10.262  1.00 25.00           C
ATOM     90  CA  ILE    90      -0.343  -2.140  10.119  1.00 25.00           C
ATOM     91  CA  ILE    91      -0.382  -2.019   6.291  1.00 25.00           C
ATOM     92  CA  ALA    92       2.703   0.251   6.307  1.00 25.00           C
ATOM     93  CA  VAL    93       4.500  -2.167   8.673  1.00 25.00           C
ATOM     94  CA  GLY    94       3.620  -5.104   6.378  1.00 25.00           C
ATOM     95  CA  ALA    95       4.957  -3.175   3.353  1.00 25.00           C
ATOM     96  CA  ALA    96       8.201  -2.416   5.241  1.00 25.00           C
ATOM     97  CA  MET    97       8.566  -6.116   6.154  1.00 25.00           C
ATOM     98  CA  ALA    98       8.023  -7.098   2.492  1.00 25.00           C
ATOM     99  CA  GLU    99      11.191  -5.966   0.723  1.00 25.00           C
ATOM    100  CA  ILE   100       9.118  -2.863   0.156  1.00 25.00           C
ATOM    101  CA  PRO   101       5.510  -2.121  -0.759  1.00 25.00           C
ATOM    102  CA  LEU   102       3.406   0.993  -1.335  1.00 25.00           C
ATOM    103  CA  VAL   103       4.399   4.648  -1.476  1.00 25.00           C
ATOM    104  CA  GLU   104       3.968   7.918   0.401  1.00 25.00           C
ATOM    105  CA  VAL   105       5.808   8.483   3.732  1.00 25.00           C
ATOM    106  CA  ARG   106       3.202  11.222   4.143  1.00 25.00           C
ATOM    107  CA  ASP   107       4.931  12.853   1.160  1.00 25.00           C
ATOM    108  CA  GLU   108       8.164  12.132  -0.670  1.00 25.00           C
ATOM    109  CA  LYS   109       7.443  10.958  -4.244  1.00 25.00           C
ATOM    110  CA  PHE   110       8.281   7.521  -2.777  1.00 25.00           C
ATOM    111  CA  PHE   111       6.836   5.814  -5.886  1.00 25.00           C
ATOM    112  CA  GLU   112       8.923   8.100  -8.141  1.00 25.00           C
ATOM    113  CA  ALA   113      12.066   7.269  -6.117  1.00 25.00           C
ATOM    114  CA  VAL   114      11.311   3.528  -6.432  1.00 25.00           C
ATOM    115  CA  LYS   115      10.852   3.914 -10.215  1.00 25.00           C
ATOM    116  CA  THR   116      10.729   0.143 -10.695  1.00 25.00           C
ATOM    117  CA  GLY   117       8.143  -2.373  -9.522  1.00 25.00           C
ATOM    118  CA  ASP   118       5.452  -4.251 -11.317  1.00 25.00           C
ATOM    119  CA  ARG   119       2.084  -4.272  -9.580  1.00 25.00           C
ATOM    120  CA  VAL   120       3.364  -2.623  -6.445  1.00 25.00           C
ATOM    121  CA  VAL   121       6.136  -0.145  -5.385  1.00 25.00           C
ATOM    122  CA  VAL   122       8.681   1.106  -2.898  1.00 25.00           C
ATOM    123  CA  ASN   123      11.284   2.665  -0.698  1.00 25.00           C
ATOM    124  CA  ALA   124      13.570  -0.271  -1.680  1.00 25.00           C
ATOM    125  CA  ASP   125      16.568   0.250  -3.986  1.00 25.00           C
ATOM    126  CA  GLU   126      15.616  -2.793  -6.136  1.00 25.00           C
ATOM    127  CA  GLY   127      11.890  -2.301  -5.999  1.00 25.00           C
ATOM    128  CA  TYR   128       9.311  -4.813  -4.923  1.00 25.00           C
ATOM    129  CA  VAL   129       6.546  -6.555  -6.947  1.00 25.00           C
ATOM    130  CA  GLU   130       3.839  -8.829  -8.374  1.00 25.00           C
ATOM    131  CA  LEU   131       1.029  -8.416  -5.844  1.00 25.00           C
ATOM    132  CA  ILE   132      -0.113 -11.719  -7.307  1.00 25.00           C
ATOM    133  CA  GLU   133      -0.088 -14.270 -10.135  1.00 25.00           C
ATOM    134  CA  LEU   134      -0.665 -16.727 -12.925  1.00 25.00           C
ATOM    135  CA  GLU   135      -1.495 -18.527 -16.105  1.00 25.00           C
ATOM    136  CA  HIS   136      -1.463 -20.415 -19.399  1.00 25.00           C
ATOM    137  CA  HIS   137       0.804 -20.832 -22.479  1.00 25.00           C
ATOM    138  CA  HIS   138       4.361 -20.267 -23.649  1.00 25.00           C
ATOM    139  CA  HIS   139       6.758 -21.518 -20.960  1.00 25.00           C
ATOM    140  CA  HIS   140       5.695 -25.149 -21.321  1.00 25.00           C
ATOM    141  CA  HIS   141       8.149 -25.350 -24.192  1.00 25.00           C
TER
END
