
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  125 (  125),  selected  125 , name T0367TS393_2
# Molecule2: number of CA atoms  125 ( 1016),  selected  125 , name T0367.pdb
# PARAMETERS: T0367TS393_2.T0367.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        84 - 125         4.98    21.23
  LCS_AVERAGE:     29.12

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         1 - 26          1.98    36.30
  LCS_AVERAGE:     16.99

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    36.85
  LONGEST_CONTINUOUS_SEGMENT:    24        99 - 122         0.82    23.08
  LCS_AVERAGE:     14.39

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     M       1     M       1      3   26   30     0    3    3    3    7   10   13   20   25   25   27   28   30   31   32   34   36   39   41   43 
LCS_GDT     D       2     D       2     24   26   30     7   16   20   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     E       3     E       3     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     L       4     L       4     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     E       5     E       5     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     L       6     L       6     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     R       7     R       7     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     I       8     I       8     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     R       9     R       9     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     K      10     K      10     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     A      11     A      11     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     E      12     E      12     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     K      13     K      13     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     L      14     L      14     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     V      15     V      15     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     Q      16     Q      16     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   39   44   46   50 
LCS_GDT     D      17     D      17     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     A      18     A      18     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   36   39   41   43 
LCS_GDT     K      19     K      19     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   32   35   38   44   49   54   56 
LCS_GDT     K      20     K      20     24   26   31    16   22   23   24   24   24   24   25   25   26   27   28   30   31   35   37   41   42   48   49 
LCS_GDT     E      21     E      21     24   26   31    16   22   23   24   24   24   24   25   25   26   27   28   30   31   34   36   38   40   43   47 
LCS_GDT     F      22     F      22     24   26   31    16   22   23   24   24   24   24   25   25   26   27   28   31   33   34   37   41   45   50   53 
LCS_GDT     E      23     E      23     24   26   31    16   22   23   24   24   24   24   26   28   29   29   30   32   33   36   38   41   45   48   53 
LCS_GDT     M      24     M      24     24   26   33    16   22   23   24   24   24   24   25   26   29   29   30   32   33   34   36   38   40   43   45 
LCS_GDT     G      25     G      25     24   26   33    16   22   23   24   24   24   24   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     L      26     L      26     23   26   33    14   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     Y      27     Y      27     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     E      28     E      28     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     R      29     R      29     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   46 
LCS_GDT     C      30     C      30     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     C      31     C      31     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   46 
LCS_GDT     S      32     S      32     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     T      33     T      33     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   35   40   41   42   43   46 
LCS_GDT     A      34     A      34     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   34   37   40   41   44   46   47 
LCS_GDT     Y      35     Y      35     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   38   41   44   46   47 
LCS_GDT     Y      36     Y      36     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   36   38   43   44   45   46   47 
LCS_GDT     A      37     A      37     23   25   33    22   23   23   24   24   25   25   27   28   29   29   34   37   38   39   43   44   45   46   47 
LCS_GDT     M      38     M      38     23   25   33    22   23   23   24   24   25   25   27   28   29   29   34   37   38   39   43   44   45   46   47 
LCS_GDT     F      39     F      39     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   33   35   39   43   44   45   46   47 
LCS_GDT     H      40     H      40     23   25   33    22   23   23   24   24   25   25   27   28   29   29   34   37   38   39   43   44   45   46   47 
LCS_GDT     A      41     A      41     23   25   33    22   23   23   24   24   25   25   27   28   29   29   33   37   38   39   43   44   45   46   47 
LCS_GDT     A      42     A      42     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   40   45   46   47 
LCS_GDT     K      43     K      43     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   39   44   45   47 
LCS_GDT     A      44     A      44     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   42   45   46 
LCS_GDT     M      45     M      45     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   44 
LCS_GDT     L      46     L      46     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     L      47     L      47     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     G      48     G      48     23   25   33    22   23   23   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     Y      49     Y      49      3   25   33     3    3    3    5    8   15   22   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     G      50     G      50      3    5   33     1    3    3    5    6    8   11   12   17   21   25   29   32   33   34   36   38   40   43   45 
LCS_GDT     R      51     R      51      3    5   33     3    3    3    5    6    8   11   12   14   17   21   26   31   33   33   36   38   40   43   45 
LCS_GDT     D      52     D      52      3    5   33     3    3    4    5    6    8   11   14   17   21   26   29   32   33   33   36   37   40   42   45 
LCS_GDT     S      53     S      53      3    5   33     3    3    3    4    5    8   10   14   17   21   26   29   32   33   33   36   37   38   42   44 
LCS_GDT     K      54     K      54      3    5   33     2    3    3    5    7    8   11   14   17   22   26   29   32   33   34   36   39   42   43   48 
LCS_GDT     T      55     T      55      3    5   33     1    3    3    5    7    9   13   17   22   23   29   30   32   35   36   40   43   47   48   50 
LCS_GDT     H      56     H      56      3   13   37     3    3    4    5    8   12   17   20   22   26   29   34   38   41   45   48   50   52   58   60 
LCS_GDT     R      57     R      57     11   13   37    10   11   11   11   13   15   18   20   22   26   29   36   39   44   47   48   51   55   58   60 
LCS_GDT     G      58     G      58     11   13   37    10   11   11   11   13   15   18   20   22   26   29   36   40   44   47   48   52   56   58   60 
LCS_GDT     T      59     T      59     11   13   37    10   11   11   11   13   14   18   20   22   27   29   36   40   44   47   48   52   56   58   60 
LCS_GDT     I      60     I      60     11   13   37    10   11   11   11   13   15   20   23   25   27   32   36   40   44   47   48   52   56   58   60 
LCS_GDT     Y      61     Y      61     11   13   37    10   11   11   11   13   15   18   20   22   29   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     L      62     L      62     11   13   37    10   11   11   11   13   15   18   20   22   29   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     I      63     I      63     11   13   37    10   11   11   11   16   21   22   23   25   29   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     W      64     W      64     11   13   37    10   11   11   11   13   15   18   20   24   29   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     E      65     E      65     11   13   37    10   11   11   11   13   15   18   20   23   29   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     C      66     C      66     11   13   37    10   11   11   11   14   19   22   23   25   29   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     R      67     R      67     11   13   37     9   11   11   11   13   15   18   20   24   29   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     E      68     E      68      4   13   37     4    4    4    8   13   13   16   17   22   27   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     E      69     E      69      4   16   37     4    4    9   12   15   19   21   23   25   27   32   37   40   44   47   48   52   56   58   60 
LCS_GDT     L      70     L      70      4   22   37     4    4    5   12   15   18   21   23   23   26   28   36   39   44   47   49   52   56   58   60 
LCS_GDT     G      71     G      71      4   22   37     4    4    5   12   16   20   21   23   25   26   29   34   37   39   44   49   52   56   58   60 
LCS_GDT     L      72     L      72     12   22   37     4    6   14   18   20   21   22   23   25   27   29   34   37   40   44   49   52   56   58   60 
LCS_GDT     S      73     S      73     19   22   37     4   10   18   19   20   21   22   23   25   27   29   34   37   40   44   49   52   53   56   57 
LCS_GDT     D      74     D      74     19   22   37    10   17   18   19   20   21   22   23   25   27   29   34   37   42   46   49   52   53   56   57 
LCS_GDT     D      75     D      75     19   22   37    10   17   20   24   24   25   25   27   28   29   29   32   37   38   39   43   48   52   56   56 
LCS_GDT     D      76     D      76     19   22   37    10   17   18   19   20   25   25   27   28   29   29   34   37   38   41   44   49   53   56   56 
LCS_GDT     C      77     C      77     19   22   37    10   17   18   19   20   21   22   23   25   27   30   34   38   42   46   49   52   56   58   60 
LCS_GDT     S      78     S      78     19   22   37     8   17   18   19   20   21   22   24   26   29   29   34   37   42   46   49   52   53   56   57 
LCS_GDT     K      79     K      79     19   22   37     8   17   18   19   20   21   22   23   26   29   29   34   37   38   39   44   50   53   56   56 
LCS_GDT     L      80     L      80     19   22   37     9   17   18   19   20   21   22   23   26   27   29   34   37   42   46   49   52   56   58   60 
LCS_GDT     S      81     S      81     19   22   37    10   17   18   19   20   21   27   29   30   32   33   34   38   42   46   49   52   56   58   60 
LCS_GDT     R      82     R      82     19   22   37    10   17   18   19   20   21   22   23   25   27   29   34   37   42   46   49   52   53   56   58 
LCS_GDT     A      83     A      83     19   22   37    10   17   18   19   20   21   22   23   25   27   32   34   37   42   46   49   52   56   58   60 
LCS_GDT     F      84     F      84     19   22   42    10   17   18   19   22   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     D      85     D      85     19   22   42    10   17   18   19   20   21   22   23   25   27   29   34   37   42   46   49   52   53   57   59 
LCS_GDT     L      86     L      86     19   22   42    10   17   18   19   20   21   22   23   25   27   29   34   37   40   46   49   52   53   57   59 
LCS_GDT     R      87     R      87     19   22   42     9   17   18   19   20   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     E      88     E      88     19   22   42     9   17   18   19   20   21   22   23   25   27   29   34   37   42   46   49   52   55   58   60 
LCS_GDT     E      89     E      89     19   22   42     8   17   18   19   20   21   22   23   25   27   29   34   37   38   39   43   50   53   56   58 
LCS_GDT     S      90     S      90     19   22   42     8   17   18   19   20   21   22   23   27   29   32   34   37   42   46   49   52   55   58   60 
LCS_GDT     D      91     D      91     19   22   42     2    5   18   19   20   21   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     Y      92     Y      92      3   21   42     3    3    5    6   12   16   19   22   25   27   29   35   39   44   47   49   52   56   58   60 
LCS_GDT     G      93     G      93      3    8   42     3    3    4    5    7    9   15   22   26   32   33   33   38   44   46   49   52   56   58   60 
LCS_GDT     I      94     I      94      3    8   42     3    3    5    6    7    9   11   14   19   22   31   33   37   41   46   49   52   56   58   60 
LCS_GDT     Y      95     Y      95      3    8   42     3    3    5    6    7    9   12   19   26   30   31   33   38   41   46   49   52   56   58   60 
LCS_GDT     K      96     K      96      4    8   42     3    4    5    6    7    9   13   21   26   30   31   35   39   44   47   49   52   56   58   60 
LCS_GDT     E      97     E      97      4    8   42     3    4    4    6    9   15   18   22   26   30   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     V      98     V      98      4    8   42     3    4    5    6    7    8   12   19   26   30   32   37   40   44   47   49   52   56   58   60 
LCS_GDT     S      99     S      99     24   25   42     3    4   21   24   24   24   26   28   30   32   33   34   39   44   47   49   52   56   58   60 
LCS_GDT     K     100     K     100     24   25   42    15   22   23   24   24   25   27   29   30   32   33   34   38   42   46   49   52   56   58   60 
LCS_GDT     D     101     D     101     24   25   42    14   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     L     102     L     102     24   25   42    14   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     A     103     A     103     24   25   42    15   22   23   24   24   25   27   29   30   32   33   34   39   44   47   49   52   56   58   60 
LCS_GDT     I     104     I     104     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     K     105     K     105     24   25   42    14   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     I     106     I     106     24   25   42    14   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     L     107     L     107     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     K     108     K     108     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     D     109     D     109     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     A     110     A     110     24   25   42    14   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     E     111     E     111     24   25   42    14   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     I     112     I     112     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     F     113     F     113     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     V     114     V     114     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     Q     115     Q     115     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     K     116     K     116     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     A     117     A     117     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     K     118     K     118     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     N     119     N     119     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   48   52   56   58   60 
LCS_GDT     A     120     A     120     24   25   42    15   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     V     121     V     121     24   25   42    12   22   23   24   24   25   27   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     N     122     N     122     24   25   42    12   21   23   24   24   25   27   29   30   32   33   37   40   44   47   48   52   56   58   60 
LCS_GDT     K     123     K     123      3   25   42     0    3    3    4    5   11   19   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_GDT     N     124     N     124      3    5   42     0    3    3    4    5    5    7   12   15   32   33   34   38   44   47   48   52   56   58   60 
LCS_GDT     R     125     R     125      0    5   42     0    1    3    6    9   15   23   29   30   32   33   37   40   44   47   49   52   56   58   60 
LCS_AVERAGE  LCS_A:  20.16  (  14.39   16.99   29.12 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     23     23     24     24     25     27     29     30     32     33     37     40     44     47     49     52     56     58     60 
GDT PERCENT_CA  17.60  18.40  18.40  19.20  19.20  20.00  21.60  23.20  24.00  25.60  26.40  29.60  32.00  35.20  37.60  39.20  41.60  44.80  46.40  48.00
GDT RMS_LOCAL    0.29   0.34   0.34   0.60   0.60   1.02   2.37   2.76   2.80   3.36   3.56   4.32   4.51   4.76   6.80   5.74   5.55   6.11   6.22   6.35
GDT RMS_ALL_CA  26.84  26.83  26.83  26.75  26.75  26.65  21.72  21.50  21.42  21.27  21.16  21.09  21.07  20.97  20.87  20.41  20.85  20.55  20.60  20.62

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         51.225
LGA    D       2      D       2         48.573
LGA    E       3      E       3         50.143
LGA    L       4      L       4         45.744
LGA    E       5      E       5         39.960
LGA    L       6      L       6         41.976
LGA    R       7      R       7         42.138
LGA    I       8      I       8         35.475
LGA    R       9      R       9         33.096
LGA    K      10      K      10         36.753
LGA    A      11      A      11         33.039
LGA    E      12      E      12         26.566
LGA    K      13      K      13         29.156
LGA    L      14      L      14         30.747
LGA    V      15      V      15         23.830
LGA    Q      16      Q      16         21.829
LGA    D      17      D      17         27.403
LGA    A      18      A      18         24.277
LGA    K      19      K      19         17.955
LGA    K      20      K      20         22.801
LGA    E      21      E      21         25.562
LGA    F      22      F      22         18.888
LGA    E      23      E      23         19.123
LGA    M      24      M      24         25.883
LGA    G      25      G      25         23.168
LGA    L      26      L      26         20.467
LGA    Y      27      Y      27         18.707
LGA    E      28      E      28         22.002
LGA    R      29      R      29         21.888
LGA    C      30      C      30         16.959
LGA    C      31      C      31         17.200
LGA    S      32      S      32         21.658
LGA    T      33      T      33         21.101
LGA    A      34      A      34         17.953
LGA    Y      35      Y      35         20.137
LGA    Y      36      Y      36         24.897
LGA    A      37      A      37         23.847
LGA    M      38      M      38         22.265
LGA    F      39      F      39         26.446
LGA    H      40      H      40         30.263
LGA    A      41      A      41         28.717
LGA    A      42      A      42         28.467
LGA    K      43      K      43         33.882
LGA    A      44      A      44         36.130
LGA    M      45      M      45         34.419
LGA    L      46      L      46         36.315
LGA    L      47      L      47         41.708
LGA    G      48      G      48         42.593
LGA    Y      49      Y      49         38.792
LGA    G      50      G      50         37.218
LGA    R      51      R      51         30.682
LGA    D      52      D      52         31.180
LGA    S      53      S      53         28.959
LGA    K      54      K      54         25.390
LGA    T      55      T      55         20.967
LGA    H      56      H      56         16.568
LGA    R      57      R      57         15.326
LGA    G      58      G      58         15.025
LGA    T      59      T      59         13.572
LGA    I      60      I      60         13.642
LGA    Y      61      Y      61         13.975
LGA    L      62      L      62         13.261
LGA    I      63      I      63         12.491
LGA    W      64      W      64         13.052
LGA    E      65      E      65         13.098
LGA    C      66      C      66         12.261
LGA    R      67      R      67         12.049
LGA    E      68      E      68         12.833
LGA    E      69      E      69         12.894
LGA    L      70      L      70         11.125
LGA    G      71      G      71         12.924
LGA    L      72      L      72         11.926
LGA    S      73      S      73         12.830
LGA    D      74      D      74          9.241
LGA    D      75      D      75         13.914
LGA    D      76      D      76         13.297
LGA    C      77      C      77          6.716
LGA    S      78      S      78          8.012
LGA    K      79      K      79         11.104
LGA    L      80      L      80          6.958
LGA    S      81      S      81          2.799
LGA    R      82      R      82          7.443
LGA    A      83      A      83          6.250
LGA    F      84      F      84          2.942
LGA    D      85      D      85          6.648
LGA    L      86      L      86          6.703
LGA    R      87      R      87          2.436
LGA    E      88      E      88          7.463
LGA    E      89      E      89          9.655
LGA    S      90      S      90          5.552
LGA    D      91      D      91          2.418
LGA    Y      92      Y      92          8.533
LGA    G      93      G      93          8.759
LGA    I      94      I      94         11.889
LGA    Y      95      Y      95         12.091
LGA    K      96      K      96         11.803
LGA    E      97      E      97          8.945
LGA    V      98      V      98          9.013
LGA    S      99      S      99          4.336
LGA    K     100      K     100          2.689
LGA    D     101      D     101          2.442
LGA    L     102      L     102          3.932
LGA    A     103      A     103          3.265
LGA    I     104      I     104          2.423
LGA    K     105      K     105          3.107
LGA    I     106      I     106          3.045
LGA    L     107      L     107          2.837
LGA    K     108      K     108          2.985
LGA    D     109      D     109          2.474
LGA    A     110      A     110          2.632
LGA    E     111      E     111          3.667
LGA    I     112      I     112          3.276
LGA    F     113      F     113          1.742
LGA    V     114      V     114          2.254
LGA    Q     115      Q     115          3.484
LGA    K     116      K     116          2.868
LGA    A     117      A     117          1.298
LGA    K     118      K     118          2.880
LGA    N     119      N     119          3.873
LGA    A     120      A     120          2.649
LGA    V     121      V     121          1.293
LGA    N     122      N     122          3.012
LGA    K     123      K     123          3.883
LGA    N     124      N     124          5.686
LGA    R     125      R     125          3.891

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  125  125    4.0     29    2.76    25.000    22.289     1.015

LGA_LOCAL      RMSD =  2.757  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.410  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 17.294  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.705269 * X  +   0.599217 * Y  +  -0.378861 * Z  +  32.806580
  Y_new =  -0.708358 * X  +   0.617279 * Y  +  -0.342339 * Z  +  35.579979
  Z_new =   0.028728 * X  +   0.509810 * Y  +   0.859807 * Z  +  21.176920 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.535209   -2.606384  [ DEG:    30.6652   -149.3348 ]
  Theta =  -0.028732   -3.112861  [ DEG:    -1.6462   -178.3538 ]
  Phi   =  -0.787584    2.354009  [ DEG:   -45.1252    134.8748 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS393_2                                  
REMARK     2: T0367.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS393_2.T0367.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  125  125   4.0   29   2.76  22.289    17.29
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS393_2
PFRMAT TS
TARGET T0367
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      24.219  -2.036   1.640  1.00 25.00           C
ATOM      2  CA  ASP     2      24.577   0.156   4.777  1.00 25.00           C
ATOM      3  CA  GLU     3      22.289   2.684   3.033  1.00 25.00           C
ATOM      4  CA  LEU     4      20.622   3.519   6.379  1.00 25.00           C
ATOM      5  CA  GLU     5      24.057   4.016   7.996  1.00 25.00           C
ATOM      6  CA  LEU     6      25.101   6.326   5.124  1.00 25.00           C
ATOM      7  CA  ARG     7      21.871   8.343   5.541  1.00 25.00           C
ATOM      8  CA  ILE     8      22.519   8.649   9.302  1.00 25.00           C
ATOM      9  CA  ARG     9      26.093   9.843   8.615  1.00 25.00           C
ATOM     10  CA  LYS    10      24.773  12.439   6.127  1.00 25.00           C
ATOM     11  CA  ALA    11      22.227  13.661   8.714  1.00 25.00           C
ATOM     12  CA  GLU    12      25.000  13.958  11.339  1.00 25.00           C
ATOM     13  CA  LYS    13      27.152  15.950   8.876  1.00 25.00           C
ATOM     14  CA  LEU    14      24.202  18.278   8.142  1.00 25.00           C
ATOM     15  CA  VAL    15      23.643  18.794  11.896  1.00 25.00           C
ATOM     16  CA  GLN    16      27.357  19.603  12.362  1.00 25.00           C
ATOM     17  CA  ASP    17      27.195  22.123   9.481  1.00 25.00           C
ATOM     18  CA  ALA    18      24.107  23.755  11.051  1.00 25.00           C
ATOM     19  CA  LYS    19      25.911  23.985  14.422  1.00 25.00           C
ATOM     20  CA  LYS    20      28.942  25.590  12.716  1.00 25.00           C
ATOM     21  CA  GLU    21      26.654  28.119  10.974  1.00 25.00           C
ATOM     22  CA  PHE    22      24.987  28.953  14.320  1.00 25.00           C
ATOM     23  CA  GLU    23      28.423  29.451  15.936  1.00 25.00           C
ATOM     24  CA  MET    24      29.466  31.760  13.065  1.00 25.00           C
ATOM     25  CA  GLY    25      26.237  33.777  13.481  1.00 25.00           C
ATOM     26  CA  LEU    26      26.884  34.084  17.243  1.00 25.00           C
ATOM     27  CA  TYR    27      30.458  35.278  16.556  1.00 25.00           C
ATOM     28  CA  GLU    28      29.139  37.873  14.068  1.00 25.00           C
ATOM     29  CA  ARG    29      26.593  39.095  16.655  1.00 25.00           C
ATOM     30  CA  CYS    30      29.366  39.391  19.280  1.00 25.00           C
ATOM     31  CA  CYS    31      31.518  41.383  16.817  1.00 25.00           C
ATOM     32  CA  SER    32      28.568  43.711  16.082  1.00 25.00           C
ATOM     33  CA  THR    33      28.009  44.228  19.836  1.00 25.00           C
ATOM     34  CA  ALA    34      31.723  45.037  20.302  1.00 25.00           C
ATOM     35  CA  TYR    35      31.561  47.556  17.422  1.00 25.00           C
ATOM     36  CA  TYR    36      28.472  49.189  18.992  1.00 25.00           C
ATOM     37  CA  ALA    37      30.276  49.420  22.362  1.00 25.00           C
ATOM     38  CA  MET    38      33.307  51.023  20.658  1.00 25.00           C
ATOM     39  CA  PHE    39      31.020  53.552  18.915  1.00 25.00           C
ATOM     40  CA  HIS    40      29.353  54.387  22.261  1.00 25.00           C
ATOM     41  CA  ALA    41      32.789  54.885  23.876  1.00 25.00           C
ATOM     42  CA  ALA    42      33.832  57.195  21.005  1.00 25.00           C
ATOM     43  CA  LYS    43      30.602  59.211  21.422  1.00 25.00           C
ATOM     44  CA  ALA    44      31.250  59.517  25.184  1.00 25.00           C
ATOM     45  CA  MET    45      34.824  60.711  24.496  1.00 25.00           C
ATOM     46  CA  LEU    46      33.504  63.307  22.009  1.00 25.00           C
ATOM     47  CA  LEU    47      30.959  64.529  24.595  1.00 25.00           C
ATOM     48  CA  GLY    48      33.731  64.826  27.220  1.00 25.00           C
ATOM     49  CA  TYR    49      33.334  61.633  29.218  1.00 25.00           C
ATOM     50  CA  GLY    50      33.238  59.020  31.980  1.00 25.00           C
ATOM     51  CA  ARG    51      33.509  55.271  31.697  1.00 25.00           C
ATOM     52  CA  ASP    52      30.406  55.336  33.868  1.00 25.00           C
ATOM     53  CA  SER    53      27.341  53.148  34.119  1.00 25.00           C
ATOM     54  CA  LYS    54      28.884  51.069  31.284  1.00 25.00           C
ATOM     55  CA  THR    55      29.256  48.485  28.441  1.00 25.00           C
ATOM     56  CA  HIS    56      30.415  45.489  26.331  1.00 25.00           C
ATOM     57  CA  ARG    57      31.729  42.796  23.942  1.00 25.00           C
ATOM     58  CA  GLY    58      35.539  43.187  23.920  1.00 25.00           C
ATOM     59  CA  THR    59      35.953  39.383  23.758  1.00 25.00           C
ATOM     60  CA  ILE    60      33.482  39.213  20.837  1.00 25.00           C
ATOM     61  CA  TYR    61      35.408  41.977  19.016  1.00 25.00           C
ATOM     62  CA  LEU    62      38.692  40.087  19.571  1.00 25.00           C
ATOM     63  CA  ILE    63      37.108  36.881  18.201  1.00 25.00           C
ATOM     64  CA  TRP    64      35.857  38.785  15.123  1.00 25.00           C
ATOM     65  CA  GLU    65      39.358  40.231  14.563  1.00 25.00           C
ATOM     66  CA  CYS    66      40.876  36.725  14.836  1.00 25.00           C
ATOM     67  CA  ARG    67      38.329  35.398  12.303  1.00 25.00           C
ATOM     68  CA  GLU    68      39.178  38.265   9.911  1.00 25.00           C
ATOM     69  CA  GLU    69      42.913  37.498  10.276  1.00 25.00           C
ATOM     70  CA  LEU    70      44.940  39.141  13.016  1.00 25.00           C
ATOM     71  CA  GLY    71      45.927  42.259  11.062  1.00 25.00           C
ATOM     72  CA  LEU    72      43.374  43.929  13.375  1.00 25.00           C
ATOM     73  CA  SER    73      44.596  47.513  13.687  1.00 25.00           C
ATOM     74  CA  ASP    74      46.528  46.474  16.840  1.00 25.00           C
ATOM     75  CA  ASP    75      45.534  48.908  19.625  1.00 25.00           C
ATOM     76  CA  ASP    76      41.851  47.957  19.174  1.00 25.00           C
ATOM     77  CA  CYS    77      42.761  44.242  19.363  1.00 25.00           C
ATOM     78  CA  SER    78      44.764  44.870  22.566  1.00 25.00           C
ATOM     79  CA  LYS    79      41.795  46.756  24.083  1.00 25.00           C
ATOM     80  CA  LEU    80      39.459  43.860  23.171  1.00 25.00           C
ATOM     81  CA  SER    81      41.876  41.369  24.788  1.00 25.00           C
ATOM     82  CA  ARG    82      42.009  43.517  27.956  1.00 25.00           C
ATOM     83  CA  ALA    83      38.182  43.651  28.056  1.00 25.00           C
ATOM     84  CA  PHE    84      38.016  39.844  27.671  1.00 25.00           C
ATOM     85  CA  ASP    85      40.536  39.420  30.523  1.00 25.00           C
ATOM     86  CA  LEU    86      38.465  41.763  32.734  1.00 25.00           C
ATOM     87  CA  ARG    87      35.299  39.760  31.932  1.00 25.00           C
ATOM     88  CA  GLU    88      37.108  36.501  32.817  1.00 25.00           C
ATOM     89  CA  GLU    89      38.281  38.023  36.129  1.00 25.00           C
ATOM     90  CA  SER    90      35.120  39.940  37.083  1.00 25.00           C
ATOM     91  CA  ASP    91      31.455  39.089  37.631  1.00 25.00           C
ATOM     92  CA  TYR    92      28.328  38.093  35.803  1.00 25.00           C
ATOM     93  CA  GLY    93      26.795  37.698  39.221  1.00 25.00           C
ATOM     94  CA  ILE    94      23.951  35.183  39.481  1.00 25.00           C
ATOM     95  CA  TYR    95      20.458  36.660  39.781  1.00 25.00           C
ATOM     96  CA  LYS    96      17.814  35.712  37.288  1.00 25.00           C
ATOM     97  CA  GLU    97      15.997  35.929  33.905  1.00 25.00           C
ATOM     98  CA  VAL    98      16.215  35.283  30.136  1.00 25.00           C
ATOM     99  CA  SER    99      17.856  37.710  27.642  1.00 25.00           C
ATOM    100  CA  LYS   100      21.207  36.632  29.010  1.00 25.00           C
ATOM    101  CA  ASP   101      21.159  33.299  27.125  1.00 25.00           C
ATOM    102  CA  LEU   102      23.169  34.860  24.264  1.00 25.00           C
ATOM    103  CA  ALA   103      25.719  36.232  26.771  1.00 25.00           C
ATOM    104  CA  ILE   104      26.024  32.775  28.389  1.00 25.00           C
ATOM    105  CA  LYS   105      26.569  31.184  24.948  1.00 25.00           C
ATOM    106  CA  ILE   106      29.275  33.774  24.152  1.00 25.00           C
ATOM    107  CA  LEU   107      30.991  33.046  27.498  1.00 25.00           C
ATOM    108  CA  LYS   108      30.890  29.289  26.760  1.00 25.00           C
ATOM    109  CA  ASP   109      32.410  29.904  23.299  1.00 25.00           C
ATOM    110  CA  ALA   110      35.184  32.028  24.867  1.00 25.00           C
ATOM    111  CA  GLU   111      35.901  29.256  27.411  1.00 25.00           C
ATOM    112  CA  ILE   112      36.078  26.675  24.587  1.00 25.00           C
ATOM    113  CA  PHE   113      38.500  28.924  22.652  1.00 25.00           C
ATOM    114  CA  VAL   114      40.682  29.304  25.776  1.00 25.00           C
ATOM    115  CA  GLN   115      40.703  25.504  26.255  1.00 25.00           C
ATOM    116  CA  LYS   116      41.715  25.023  22.592  1.00 25.00           C
ATOM    117  CA  ALA   117      44.543  27.571  23.013  1.00 25.00           C
ATOM    118  CA  LYS   118      45.750  25.747  26.158  1.00 25.00           C
ATOM    119  CA  ASN   119      45.703  22.414  24.273  1.00 25.00           C
ATOM    120  CA  ALA   120      47.714  23.976  21.411  1.00 25.00           C
ATOM    121  CA  VAL   121      50.263  25.348  23.918  1.00 25.00           C
ATOM    122  CA  ASN   122      50.568  21.890  25.537  1.00 25.00           C
ATOM    123  CA  LYS   123      51.559  18.743  23.535  1.00 25.00           C
ATOM    124  CA  ASN   124      50.180  15.601  21.821  1.00 25.00           C
ATOM    125  CA  ARG   125      47.073  14.085  20.249  1.00 25.00           C
TER
END
