
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS393_3
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS393_3.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37       110 - 146         4.77    19.55
  LONGEST_CONTINUOUS_SEGMENT:    37       111 - 147         4.88    19.55
  LCS_AVERAGE:     23.28

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30       111 - 140         1.95    20.04
  LONGEST_CONTINUOUS_SEGMENT:    30       112 - 141         1.68    20.05
  LCS_AVERAGE:     11.81

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       112 - 139         0.93    20.09
  LONGEST_CONTINUOUS_SEGMENT:    28       113 - 140         0.96    20.11
  LCS_AVERAGE:      9.42

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1     11   13   33     3    3   12   12   14   16   18   21   24   25   29   33   36   37   37   41   44   47   48   51 
LCS_GDT     T       2     T       2     11   13   33     3    4   12   12   14   16   21   23   25   27   29   33   36   37   38   41   43   44   47   51 
LCS_GDT     D       3     D       3     11   13   33     9   10   12   12   14   16   19   21   24   27   29   33   36   37   38   41   43   44   47   49 
LCS_GDT     W       4     W       4     11   13   33     9   10   12   12   14   16   18   21   25   27   29   33   36   37   38   41   43   44   46   48 
LCS_GDT     Q       5     Q       5     11   13   34     9   10   12   12   14   16   19   21   24   25   29   33   36   37   38   41   43   44   48   51 
LCS_GDT     Q       6     Q       6     11   13   34     9   10   12   12   14   16   18   21   24   25   29   33   36   37   37   41   44   47   48   51 
LCS_GDT     A       7     A       7     11   13   34     9   10   12   13   15   17   19   21   24   25   29   33   36   37   38   41   44   47   50   54 
LCS_GDT     L       8     L       8     11   13   34     9   10   12   12   14   16   19   21   24   25   29   33   36   37   38   41   44   47   48   52 
LCS_GDT     D       9     D       9     11   13   34     9   10   12   12   14   16   18   21   24   25   29   33   36   37   39   42   44   47   48   52 
LCS_GDT     R      10     R      10     11   13   34     9   10   12   12   14   16   18   21   24   25   29   33   36   37   40   42   44   48   52   56 
LCS_GDT     H      11     H      11     11   13   34     9   10   12   12   14   16   18   21   24   25   29   33   36   37   40   43   46   48   52   56 
LCS_GDT     V      12     V      12      3   13   34     3    3    4    7   11   13   15   20   22   25   28   32   36   37   40   42   45   47   48   52 
LCS_GDT     G      13     G      13      4   13   34     3   10   12   12   14   16   18   21   24   25   29   33   36   37   40   42   45   47   48   51 
LCS_GDT     V      14     V      14      4    5   34     3    3    5    8   12   16   18   20   22   25   28   32   33   35   40   42   45   47   48   53 
LCS_GDT     G      15     G      15      4   13   34     3    3    4    5   12   14   18   20   22   25   27   31   33   35   40   42   45   47   48   51 
LCS_GDT     V      16     V      16     11   13   34     3    4    8   11   12   14   18   20   22   23   26   31   36   38   40   42   45   47   48   51 
LCS_GDT     R      17     R      17     11   13   34    10   10   10   11   12   14   18   20   24   27   31   34   36   38   40   42   45   47   48   51 
LCS_GDT     T      18     T      18     11   13   34    10   10   10   11   12   15   18   21   24   25   29   33   36   38   40   42   45   47   49   52 
LCS_GDT     T      19     T      19     11   13   34    10   10   10   11   13   15   18   21   24   26   31   34   36   38   40   42   45   47   48   52 
LCS_GDT     R      20     R      20     11   13   34    10   10   10   11   12   15   18   21   24   27   31   34   36   38   40   42   44   47   51   52 
LCS_GDT     D      21     D      21     11   13   34    10   10   10   11   12   14   18   20   24   25   29   33   36   37   40   41   44   45   48   50 
LCS_GDT     L      22     L      22     11   13   34    10   10   10   11   12   14   18   20   24   25   29   33   36   37   40   42   44   47   48   51 
LCS_GDT     I      23     I      23     11   13   34    10   10   10   11   12   14   18   21   24   25   29   34   36   38   40   42   44   47   51   52 
LCS_GDT     R      24     R      24     11   13   34    10   10   10   11   12   14   18   20   22   25   29   33   36   37   38   39   42   44   47   52 
LCS_GDT     L      25     L      25     11   13   34    10   10   10   11   12   14   18   20   22   25   29   33   36   37   38   39   42   44   47   52 
LCS_GDT     I      26     I      26     11   13   34    10   10   10   11   12   13   16   20   22   23   26   33   36   37   38   39   42   44   47   52 
LCS_GDT     Q      27     Q      27      3   13   34     3    3    4    9   12   13   18   20   22   23   26   33   36   37   37   38   40   43   47   52 
LCS_GDT     P      28     P      28      4   13   34     3    4    4    5    7   10   14   16   24   25   29   33   36   37   37   38   42   46   48   52 
LCS_GDT     E      29     E      29      4    6   34     3    4    4    5    6    8   10   11   15   22   25   33   36   37   37   38   42   45   48   52 
LCS_GDT     D      30     D      30      4    6   34     3    5   10   10   13   15   18   21   22   25   29   33   36   37   37   38   42   46   48   52 
LCS_GDT     W      31     W      31      5    6   34     4    5    5    6   12   15   18   21   24   25   29   33   36   37   37   38   43   46   48   52 
LCS_GDT     D      32     D      32      5    6   34     4    5    5    6    8   15   18   20   22   23   27   33   36   37   37   38   43   46   48   51 
LCS_GDT     K      33     K      33      5    6   34     4    5    5    6    9   14   18   20   22   23   29   33   36   37   39   42   44   47   48   52 
LCS_GDT     R      34     R      34      5    6   34     4    5    5    6    9   14   18   20   22   23   25   28   32   34   37   38   43   46   48   52 
LCS_GDT     P      35     P      35      5    7   34     4    5    5    6   12   16   16   20   22   23   26   30   35   36   39   42   45   46   48   52 
LCS_GDT     I      36     I      36      3    7   34     3    3    4    9   14   17   19   20   22   25   28   31   35   37   38   42   45   47   52   54 
LCS_GDT     S      37     S      37      3    7   34     3    4    5    7   10   13   16   20   22   26   29   30   32   37   40   43   46   48   52   54 
LCS_GDT     G      38     G      38      3    7   34     3    5    6    8   14   16   16   17   21   26   29   33   36   37   40   43   46   48   52   56 
LCS_GDT     K      39     K      39      3    7   36     3    5    6    8   11   14   15   20   22   26   29   33   36   37   40   43   46   48   52   56 
LCS_GDT     R      40     R      40      3   14   36     3    3    4    6    9   14   18   20   22   26   29   33   36   38   40   43   46   48   52   56 
LCS_GDT     S      41     S      41     13   18   36    10   12   13   15   16   19   21   23   25   27   29   34   36   38   40   43   45   48   51   54 
LCS_GDT     V      42     V      42     13   18   36    10   12   13   15   16   19   21   23   25   27   31   34   36   38   40   43   45   48   52   54 
LCS_GDT     Y      43     Y      43     13   18   36    10   12   13   15   16   19   21   23   25   28   31   34   36   38   40   43   46   48   52   54 
LCS_GDT     E      44     E      44     13   18   36    10   12   13   15   16   19   21   23   25   27   30   34   36   38   40   43   46   48   52   54 
LCS_GDT     V      45     V      45     13   18   36    10   12   13   15   16   19   21   23   25   27   31   34   36   38   40   43   46   48   52   54 
LCS_GDT     A      46     A      46     13   18   36    10   12   13   15   16   19   21   23   28   32   33   35   36   38   40   43   46   48   52   56 
LCS_GDT     V      47     V      47     13   18   36    10   12   13   15   16   19   21   23   25   28   31   34   36   38   40   43   46   48   52   56 
LCS_GDT     H      48     H      48     13   18   36    10   12   13   15   16   19   21   24   29   32   33   35   36   38   40   43   46   48   52   56 
LCS_GDT     L      49     L      49     13   18   36    10   12   13   15   16   19   23   28   31   32   33   35   36   38   40   43   46   54   57   60 
LCS_GDT     A      50     A      50     13   18   36    10   12   13   15   16   19   25   29   31   32   33   35   37   40   43   48   55   58   63   66 
LCS_GDT     V      51     V      51     13   18   36     9   12   13   15   16   20   28   30   31   32   33   35   37   39   41   48   49   57   63   66 
LCS_GDT     L      52     L      52     13   18   36     8   12   13   15   16   19   21   23   25   28   31   34   36   38   40   43   46   51   53   56 
LCS_GDT     L      53     L      53     13   18   36     6   12   12   15   16   19   21   23   25   28   31   34   36   38   40   43   46   51   59   65 
LCS_GDT     E      54     E      54     11   18   36     8   12   12   15   16   19   21   23   25   27   29   34   35   38   40   42   49   57   63   66 
LCS_GDT     A      55     A      55     11   18   36     8   12   12   15   16   19   21   23   25   28   31   34   36   38   40   42   45   47   51   55 
LCS_GDT     D      56     D      56     11   18   36     8   12   12   14   16   19   21   23   25   28   31   34   36   38   40   42   45   47   48   52 
LCS_GDT     L      57     L      57     11   18   36     8   12   12   14   16   19   21   23   25   28   31   34   36   38   40   42   45   47   49   52 
LCS_GDT     R      58     R      58     11   18   36     8   12   12   14   16   19   21   23   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     I      59     I      59     11   18   36     8   12   12   14   16   19   21   23   25   28   31   34   36   38   40   42   45   47   48   52 
LCS_GDT     A      60     A      60     11   17   36     8   12   12   14   16   18   21   23   25   28   31   34   36   38   40   42   45   47   48   52 
LCS_GDT     T      61     T      61     11   17   36     7   12   12   14   16   18   21   23   25   28   31   34   36   38   40   42   45   47   49   52 
LCS_GDT     G      62     G      62      3   12   36     3    3    4    5    6   11   17   20   25   28   31   34   36   38   40   42   45   47   49   52 
LCS_GDT     A      63     A      63     10   12   36     3    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     T      64     T      64     10   12   36     3    3    5   10   14   14   17   20   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     A      65     A      65     10   12   36     7    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     D      66     D      66     10   12   36     7    8   11   13   14   14   17   20   25   28   31   34   36   37   40   41   44   46   51   52 
LCS_GDT     E      67     E      67     10   12   36     7    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     M      68     M      68     10   12   36     7    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     A      69     A      69     10   12   36     7    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   46   51   52 
LCS_GDT     Q      70     Q      70     10   12   36     7    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   46   51   52 
LCS_GDT     F      71     F      71     10   12   36     7    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     Y      72     Y      72     10   12   36     3    8   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   47   51   52 
LCS_GDT     A      73     A      73      9   12   36     3    6   11   13   14   14   17   20   25   28   31   34   36   38   40   42   45   46   51   52 
LCS_GDT     V      74     V      74      3    5   36     3    3    3    6    7   11   13   17   21   25   29   34   35   38   40   42   45   46   49   51 
LCS_GDT     P      75     P      75      3    5   35     3    3    3    4    5    8   13   15   21   25   29   34   35   38   39   42   49   54   57   60 
LCS_GDT     V      76     V      76      3    5   31     3    3    4    5    5    6    8   15   21   25   29   34   35   38   49   51   56   58   63   66 
LCS_GDT     L      77     L      77      5   23   31     3    4    5   12   16   22   22   23   26   28   34   44   47   52   53   53   56   58   63   66 
LCS_GDT     P      78     P      78     21   23   31     4    4   14   21   21   22   25   27   31   33   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     E      79     E      79     21   23   31     4    4    8   20   21   22   25   27   31   34   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Q      80     Q      80     21   23   31    18   19   19   21   21   22   24   27   29   33   36   40   44   52   53   53   56   58   63   66 
LCS_GDT     L      81     L      81     21   23   31    18   19   19   21   21   22   25   27   31   33   36   49   50   52   53   53   56   58   63   66 
LCS_GDT     V      82     V      82     21   23   31    18   19   19   21   21   22   25   27   34   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     D      83     D      83     21   23   31    18   19   19   21   21   22   25   27   31   33   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     R      84     R      84     21   23   31    18   19   19   21   21   22   25   27   31   33   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L      85     L      85     21   23   31    18   19   19   21   21   22   25   29   34   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     D      86     D      86     21   23   31    18   19   19   21   21   22   25   30   34   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Q      87     Q      87     21   23   31    18   19   19   21   21   22   25   27   31   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     S      88     S      88     21   23   31    18   19   19   21   21   22   25   27   34   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     W      89     W      89     21   23   31    18   19   19   21   21   23   30   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Q      90     Q      90     21   23   31    18   19   19   21   21   22   26   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Y      91     Y      91     21   23   31    18   19   19   21   21   22   25   30   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Y      92     Y      92     21   23   31    18   19   19   21   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Q      93     Q      93     21   23   31    18   19   19   21   27   28   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     D      94     D      94     21   23   31    18   19   19   21   21   23   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     R      95     R      95     21   23   31    18   19   19   21   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L      96     L      96     21   23   31    18   19   19   21   24   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     M      97     M      97     21   23   31     3   19   19   21   21   22   30   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     A      98     A      98     21   23   31    18   19   19   24   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     D      99     D      99     21   23   31     3    4   16   21   21   22   28   33   34   37   41   44   50   52   53   53   56   58   63   66 
LCS_GDT     F     100     F     100      3   23   31     3    3    4   10   12   15   17   22   23   29   31   35   38   41   43   49   55   58   63   66 
LCS_GDT     S     101     S     101      3    5   31     3    4    5    8   10   12   13   16   21   26   29   30   32   37   41   49   52   58   63   66 
LCS_GDT     T     102     T     102      4    6   27     3    3    4    5    6    8   13   17   22   26   29   30   32   37   40   43   46   48   52   56 
LCS_GDT     E     103     E     103      4    6   26     3    3    4    5    6    9   14   17   22   26   29   30   32   37   40   43   46   48   52   56 
LCS_GDT     T     104     T     104      4    6   18     3    3    4    7    8   10   14   17   22   26   29   34   35   37   40   43   46   48   52   56 
LCS_GDT     T     105     T     105      4    6   18     3    3    4    5    6    7    8   10   12   15   17   24   29   32   35   39   41   47   52   54 
LCS_GDT     Y     106     Y     106      4    6   20     3    3    4    5    6    7    8   10   12   16   20   27   31   34   37   39   42   48   52   54 
LCS_GDT     W     107     W     107      4    6   20     3    3    4    5    6    7    8   10   12   15   17   19   21   23   35   36   42   44   47   52 
LCS_GDT     G     108     G     108      4    6   34     3    3    4    5    6   10   10   12   15   17   21   22   27   32   36   40   44   48   52   56 
LCS_GDT     V     109     V     109      4    6   36     3    4    4    4    6    7    9   12   15   19   21   28   32   35   38   39   42   47   51   56 
LCS_GDT     T     110     T     110      4    6   37     3    4    4    5    7   12   17   21   27   31   33   34   38   41   43   49   52   58   63   66 
LCS_GDT     D     111     D     111      4   30   37     3    4    4    5    5    7   15   21   27   32   33   35   36   37   43   49   52   58   63   66 
LCS_GDT     S     112     S     112     28   30   37     0    4    4    5   12   28   29   33   34   37   38   39   41   46   53   53   56   57   61   66 
LCS_GDT     T     113     T     113     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     T     114     T     114     28   30   37    21   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   57   59   66 
LCS_GDT     G     115     G     115     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   57   59   66 
LCS_GDT     W     116     W     116     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     117     L     117     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     118     L     118     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   57   63   66 
LCS_GDT     E     119     E     119     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     A     120     A     120     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     A     121     A     121     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     V     122     V     122     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     H     123     H     123     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     124     L     124     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Y     125     Y     125     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     H     126     H     126     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     H     127     H     127     28   30   37    21   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     R     128     R     128     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     S     129     S     129     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Q     130     Q     130     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     131     L     131     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     132     L     132     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     D     133     D     133     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     Y     134     Y     134     28   30   37    24   26   26   27   28   31   33   37   38   38   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     135     L     135     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     N     136     N     136     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     137     L     137     28   30   37    24   26   26   27   28   31   33   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     L     138     L     138     28   30   37    24   26   26   27   27   31   33   37   38   42   43   49   50   52   53   53   56   57   63   66 
LCS_GDT     G     139     G     139     28   30   37     3    3    5   27   27   29   33   37   38   42   43   49   50   52   53   53   56   57   63   66 
LCS_GDT     Y     140     Y     140     28   30   37     3    4   19   21   27   31   31   37   38   42   43   49   50   52   53   53   56   58   63   66 
LCS_GDT     D     141     D     141      3   30   37     1    3    4    7   12   15   21   23   31   35   41   49   50   52   53   53   56   58   63   66 
LCS_GDT     I     142     I     142      3    6   37     1    3    4    4    5    6    7   10   15   16   17   21   24   28   35   40   44   58   63   66 
LCS_GDT     K     143     K     143      3    6   37     3    6   11   12   13   14   17   19   22   24   31   34   47   48   53   53   56   58   63   66 
LCS_GDT     L     144     L     144      3    6   37     3   12   13   15   16   17   19   21   23   25   27   33   37   39   48   49   56   58   63   66 
LCS_GDT     D     145     D     145      3    6   37     3    4   10   14   16   18   21   23   25   27   27   31   35   37   39   43   49   58   63   66 
LCS_GDT     L     146     L     146      3    5   37     3    3    3    4    8   18   21   23   25   27   28   31   35   37   38   41   43   46   49   54 
LCS_GDT     F     147     F     147      3    5   37     3   12   12   13   16   17   20   22   25   27   27   31   35   37   38   41   44   58   63   66 
LCS_AVERAGE  LCS_A:  14.83  (   9.42   11.81   23.28 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     26     26     27     28     31     33     37     38     42     43     49     50     52     53     53     56     58     63     66 
GDT PERCENT_CA  16.33  17.69  17.69  18.37  19.05  21.09  22.45  25.17  25.85  28.57  29.25  33.33  34.01  35.37  36.05  36.05  38.10  39.46  42.86  44.90
GDT RMS_LOCAL    0.33   0.36   0.36   0.58   1.30   1.59   1.84   2.34   2.48   3.26   3.27   3.95   4.04   4.21   4.30   4.30   4.70   5.96   6.32   6.33
GDT RMS_ALL_CA  20.13  20.11  20.11  20.16  20.20  20.13  20.37  20.43  20.47  20.62  20.64  20.61  20.51  20.47  20.42  20.42  20.30  19.34  19.26  19.40

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         42.056
LGA    T       2      T       2         42.532
LGA    D       3      D       3         37.578
LGA    W       4      W       4         34.212
LGA    Q       5      Q       5         33.059
LGA    Q       6      Q       6         30.834
LGA    A       7      A       7         27.457
LGA    L       8      L       8         25.217
LGA    D       9      D       9         25.231
LGA    R      10      R      10         21.879
LGA    H      11      H      11         19.266
LGA    V      12      V      12         21.359
LGA    G      13      G      13         20.645
LGA    V      14      V      14         16.902
LGA    G      15      G      15         21.064
LGA    V      16      V      16         21.277
LGA    R      17      R      17         18.142
LGA    T      18      T      18         15.302
LGA    T      19      T      19         17.700
LGA    R      20      R      20         21.297
LGA    D      21      D      21         19.675
LGA    L      22      L      22         18.439
LGA    I      23      I      23         22.882
LGA    R      24      R      24         26.331
LGA    L      25      L      25         25.269
LGA    I      26      I      26         25.832
LGA    Q      27      Q      27         33.143
LGA    P      28      P      28         39.069
LGA    E      29      E      29         43.636
LGA    D      30      D      30         42.077
LGA    W      31      W      31         38.756
LGA    D      32      D      32         43.003
LGA    K      33      K      33         40.504
LGA    R      34      R      34         39.380
LGA    P      35      P      35         34.669
LGA    I      36      I      36         29.536
LGA    S      37      S      37         30.050
LGA    G      38      G      38         27.311
LGA    K      39      K      39         22.284
LGA    R      40      R      40         22.742
LGA    S      41      S      41         26.425
LGA    V      42      V      42         21.934
LGA    Y      43      Y      43         21.127
LGA    E      44      E      44         21.982
LGA    V      45      V      45         19.255
LGA    A      46      A      46         15.313
LGA    V      47      V      47         15.924
LGA    H      48      H      48         17.141
LGA    L      49      L      49         13.637
LGA    A      50      A      50         10.858
LGA    V      51      V      51         12.822
LGA    L      52      L      52         15.994
LGA    L      53      L      53         14.568
LGA    E      54      E      54         13.914
LGA    A      55      A      55         18.269
LGA    D      56      D      56         22.366
LGA    L      57      L      57         21.865
LGA    R      58      R      58         21.531
LGA    I      59      I      59         27.530
LGA    A      60      A      60         30.217
LGA    T      61      T      61         30.106
LGA    G      62      G      62         32.675
LGA    A      63      A      63         26.915
LGA    T      64      T      64         28.283
LGA    A      65      A      65         29.217
LGA    D      66      D      66         31.959
LGA    E      67      E      67         30.030
LGA    M      68      M      68         24.530
LGA    A      69      A      69         26.004
LGA    Q      70      Q      70         28.957
LGA    F      71      F      71         24.769
LGA    Y      72      Y      72         21.186
LGA    A      73      A      73         22.775
LGA    V      74      V      74         17.865
LGA    P      75      P      75         13.549
LGA    V      76      V      76          9.822
LGA    L      77      L      77         10.070
LGA    P      78      P      78          8.057
LGA    E      79      E      79          8.677
LGA    Q      80      Q      80         10.859
LGA    L      81      L      81          8.737
LGA    V      82      V      82          6.975
LGA    D      83      D      83          8.740
LGA    R      84      R      84          8.398
LGA    L      85      L      85          5.336
LGA    D      86      D      86          5.218
LGA    Q      87      Q      87          6.582
LGA    S      88      S      88          5.440
LGA    W      89      W      89          2.679
LGA    Q      90      Q      90          3.698
LGA    Y      91      Y      91          4.463
LGA    Y      92      Y      92          3.409
LGA    Q      93      Q      93          1.807
LGA    D      94      D      94          2.264
LGA    R      95      R      95          3.550
LGA    L      96      L      96          3.790
LGA    M      97      M      97          3.458
LGA    A      98      A      98          2.343
LGA    D      99      D      99          7.454
LGA    F     100      F     100         13.685
LGA    S     101      S     101         18.453
LGA    T     102      T     102         22.234
LGA    E     103      E     103         27.289
LGA    T     104      T     104         27.160
LGA    T     105      T     105         29.869
LGA    Y     106      Y     106         30.790
LGA    W     107      W     107         30.573
LGA    G     108      G     108         25.996
LGA    V     109      V     109         21.960
LGA    T     110      T     110         15.664
LGA    D     111      D     111         11.605
LGA    S     112      S     112          6.829
LGA    T     113      T     113          1.584
LGA    T     114      T     114          0.858
LGA    G     115      G     115          2.470
LGA    W     116      W     116          2.361
LGA    L     117      L     117          0.713
LGA    L     118      L     118          1.809
LGA    E     119      E     119          2.513
LGA    A     120      A     120          1.990
LGA    A     121      A     121          0.838
LGA    V     122      V     122          2.605
LGA    H     123      H     123          3.019
LGA    L     124      L     124          1.853
LGA    Y     125      Y     125          1.365
LGA    H     126      H     126          3.003
LGA    H     127      H     127          3.598
LGA    R     128      R     128          1.469
LGA    S     129      S     129          1.800
LGA    Q     130      Q     130          3.376
LGA    L     131      L     131          2.931
LGA    L     132      L     132          0.899
LGA    D     133      D     133          2.582
LGA    Y     134      Y     134          3.589
LGA    L     135      L     135          2.432
LGA    N     136      N     136          1.130
LGA    L     137      L     137          3.358
LGA    L     138      L     138          3.434
LGA    G     139      G     139          3.738
LGA    Y     140      Y     140          3.896
LGA    D     141      D     141          6.612
LGA    I     142      I     142         11.839
LGA    K     143      K     143          9.300
LGA    L     144      L     144         10.832
LGA    D     145      D     145         13.077
LGA    L     146      L     146         14.811
LGA    F     147      F     147         13.031

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     37    2.34    24.320    21.366     1.516

LGA_LOCAL      RMSD =  2.341  Number of atoms =   37  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.640  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 15.717  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.516393 * X  +  -0.705514 * Y  +  -0.485375 * Z  +  11.460050
  Y_new =  -0.678607 * X  +  -0.682848 * Y  +   0.270577 * Z  +  -0.677443
  Z_new =  -0.522333 * X  +   0.189654 * Y  +  -0.831384 * Z  +   0.114959 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.917312   -0.224281  [ DEG:   167.1496    -12.8504 ]
  Theta =   0.549585    2.592008  [ DEG:    31.4889    148.5111 ]
  Phi   =  -0.920318    2.221275  [ DEG:   -52.7303    127.2697 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS393_3                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS393_3.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   37   2.34  21.366    15.72
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS393_3
PFRMAT TS
TARGET T0369
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      24.596 -23.410  11.429  1.00 25.00           C
ATOM      2  CA  THR     2      24.023 -23.282   7.706  1.00 25.00           C
ATOM      3  CA  ASP     3      24.516 -19.594   6.853  1.00 25.00           C
ATOM      4  CA  TRP     4      21.927 -17.096   5.540  1.00 25.00           C
ATOM      5  CA  GLN     5      20.131 -17.142   8.923  1.00 25.00           C
ATOM      6  CA  GLN     6      23.454 -16.522  10.722  1.00 25.00           C
ATOM      7  CA  ALA     7      24.205 -13.589   8.377  1.00 25.00           C
ATOM      8  CA  LEU     8      20.732 -12.126   9.053  1.00 25.00           C
ATOM      9  CA  ASP     9      21.297 -12.465  12.826  1.00 25.00           C
ATOM     10  CA  ARG    10      24.685 -10.709  12.501  1.00 25.00           C
ATOM     11  CA  HIS    11      23.053  -7.877  10.504  1.00 25.00           C
ATOM     12  CA  VAL    12      23.172  -5.506  13.472  1.00 25.00           C
ATOM     13  CA  GLY    13      21.259  -7.571  15.961  1.00 25.00           C
ATOM     14  CA  VAL    14      18.026  -5.814  16.764  1.00 25.00           C
ATOM     15  CA  GLY    15      19.989  -2.774  17.941  1.00 25.00           C
ATOM     16  CA  VAL    16      22.329  -0.842  15.646  1.00 25.00           C
ATOM     17  CA  ARG    17      21.761   2.654  14.398  1.00 25.00           C
ATOM     18  CA  THR    18      20.923   1.065  11.016  1.00 25.00           C
ATOM     19  CA  THR    19      17.211   0.967  11.955  1.00 25.00           C
ATOM     20  CA  ARG    20      17.346   4.657  12.971  1.00 25.00           C
ATOM     21  CA  ASP    21      19.018   5.540   9.641  1.00 25.00           C
ATOM     22  CA  LEU    22      16.311   3.609   7.742  1.00 25.00           C
ATOM     23  CA  ILE    23      13.586   5.464   9.692  1.00 25.00           C
ATOM     24  CA  ARG    24      15.248   8.816   8.875  1.00 25.00           C
ATOM     25  CA  LEU    25      15.402   7.864   5.169  1.00 25.00           C
ATOM     26  CA  ILE    26      11.694   6.908   5.235  1.00 25.00           C
ATOM     27  CA  GLN    27      10.701  10.156   7.039  1.00 25.00           C
ATOM     28  CA  PRO    28      10.551  12.167  10.295  1.00 25.00           C
ATOM     29  CA  GLU    29      13.139  14.963  10.695  1.00 25.00           C
ATOM     30  CA  ASP    30      10.414  17.596  10.142  1.00 25.00           C
ATOM     31  CA  TRP    31       7.080  15.933   9.181  1.00 25.00           C
ATOM     32  CA  ASP    32       4.562  18.211  10.831  1.00 25.00           C
ATOM     33  CA  LYS    33       1.916  15.985  12.545  1.00 25.00           C
ATOM     34  CA  ARG    34       0.996  14.805  16.078  1.00 25.00           C
ATOM     35  CA  PRO    35      -0.977  11.644  16.475  1.00 25.00           C
ATOM     36  CA  ILE    36      -1.466   8.628  14.136  1.00 25.00           C
ATOM     37  CA  SER    37      -1.706   4.844  13.853  1.00 25.00           C
ATOM     38  CA  GLY    38      -3.962   4.630  10.797  1.00 25.00           C
ATOM     39  CA  LYS    39      -2.395   3.136   7.740  1.00 25.00           C
ATOM     40  CA  ARG    40      -0.705   5.606   5.350  1.00 25.00           C
ATOM     41  CA  SER    41       2.424   5.640   7.558  1.00 25.00           C
ATOM     42  CA  VAL    42       2.480   1.810   7.581  1.00 25.00           C
ATOM     43  CA  TYR    43       2.164   1.759   3.765  1.00 25.00           C
ATOM     44  CA  GLU    44       5.049   4.259   3.467  1.00 25.00           C
ATOM     45  CA  VAL    45       7.196   2.095   5.786  1.00 25.00           C
ATOM     46  CA  ALA    46       6.397  -1.001   3.678  1.00 25.00           C
ATOM     47  CA  VAL    47       7.360   0.891   0.491  1.00 25.00           C
ATOM     48  CA  HIS    48      10.657   1.982   2.105  1.00 25.00           C
ATOM     49  CA  LEU    49      11.380  -1.636   3.131  1.00 25.00           C
ATOM     50  CA  ALA    50      10.664  -2.818  -0.441  1.00 25.00           C
ATOM     51  CA  VAL    51      13.021  -0.136  -1.827  1.00 25.00           C
ATOM     52  CA  LEU    52      15.750  -1.234   0.626  1.00 25.00           C
ATOM     53  CA  LEU    53      15.277  -4.881  -0.441  1.00 25.00           C
ATOM     54  CA  GLU    54      15.544  -3.865  -4.124  1.00 25.00           C
ATOM     55  CA  ALA    55      18.757  -1.917  -3.378  1.00 25.00           C
ATOM     56  CA  ASP    56      20.206  -4.958  -1.555  1.00 25.00           C
ATOM     57  CA  LEU    57      19.322  -7.196  -4.534  1.00 25.00           C
ATOM     58  CA  ARG    58      21.012  -4.726  -6.923  1.00 25.00           C
ATOM     59  CA  ILE    59      24.141  -4.693  -4.715  1.00 25.00           C
ATOM     60  CA  ALA    60      24.196  -8.521  -4.693  1.00 25.00           C
ATOM     61  CA  THR    61      24.616  -9.236  -8.387  1.00 25.00           C
ATOM     62  CA  GLY    62      21.603 -11.515  -7.747  1.00 25.00           C
ATOM     63  CA  ALA    63      18.954  -9.107  -9.087  1.00 25.00           C
ATOM     64  CA  THR    64      18.796 -10.499 -12.685  1.00 25.00           C
ATOM     65  CA  ALA    65      16.642 -13.179 -11.040  1.00 25.00           C
ATOM     66  CA  ASP    66      17.305 -16.061  -8.606  1.00 25.00           C
ATOM     67  CA  GLU    67      17.287 -13.611  -5.662  1.00 25.00           C
ATOM     68  CA  MET    68      13.970 -12.135  -6.880  1.00 25.00           C
ATOM     69  CA  ALA    69      12.480 -15.651  -7.163  1.00 25.00           C
ATOM     70  CA  GLN    70      13.654 -16.461  -3.608  1.00 25.00           C
ATOM     71  CA  PHE    71      12.076 -13.217  -2.321  1.00 25.00           C
ATOM     72  CA  TYR    72       8.375 -13.115  -3.202  1.00 25.00           C
ATOM     73  CA  ALA    73       8.056 -16.613  -4.608  1.00 25.00           C
ATOM     74  CA  VAL    74       7.413 -14.821  -7.918  1.00 25.00           C
ATOM     75  CA  PRO    75       6.990 -17.263 -10.784  1.00 25.00           C
ATOM     76  CA  VAL    76       4.272 -16.119 -13.212  1.00 25.00           C
ATOM     77  CA  LEU    77       1.256 -13.778 -12.710  1.00 25.00           C
ATOM     78  CA  PRO    78       3.311 -12.027  -9.984  1.00 25.00           C
ATOM     79  CA  GLU    79       5.922 -11.374 -12.709  1.00 25.00           C
ATOM     80  CA  GLN    80       4.088  -8.171 -13.732  1.00 25.00           C
ATOM     81  CA  LEU    81       4.004  -7.022 -10.080  1.00 25.00           C
ATOM     82  CA  VAL    82       7.758  -7.708  -9.754  1.00 25.00           C
ATOM     83  CA  ASP    83       8.427  -5.704 -12.948  1.00 25.00           C
ATOM     84  CA  ARG    84       6.332  -2.799 -11.593  1.00 25.00           C
ATOM     85  CA  LEU    85       8.281  -2.897  -8.298  1.00 25.00           C
ATOM     86  CA  ASP    86      11.590  -2.853 -10.226  1.00 25.00           C
ATOM     87  CA  GLN    87      10.383   0.145 -12.280  1.00 25.00           C
ATOM     88  CA  SER    88       9.383   1.974  -9.067  1.00 25.00           C
ATOM     89  CA  TRP    89      12.829   1.256  -7.557  1.00 25.00           C
ATOM     90  CA  GLN    90      14.522   2.591 -10.722  1.00 25.00           C
ATOM     91  CA  TYR    91      12.379   5.761 -10.561  1.00 25.00           C
ATOM     92  CA  TYR    92      13.320   6.241  -6.881  1.00 25.00           C
ATOM     93  CA  GLN    93      17.026   5.819  -7.748  1.00 25.00           C
ATOM     94  CA  ASP    94      16.688   8.401 -10.556  1.00 25.00           C
ATOM     95  CA  ARG    95      14.989  10.841  -8.142  1.00 25.00           C
ATOM     96  CA  LEU    96      17.808  10.325  -5.601  1.00 25.00           C
ATOM     97  CA  MET    97      20.418  10.980  -8.326  1.00 25.00           C
ATOM     98  CA  ALA    98      18.583  14.182  -9.349  1.00 25.00           C
ATOM     99  CA  ASP    99      18.501  15.331  -5.697  1.00 25.00           C
ATOM    100  CA  PHE   100      21.328  13.673  -3.746  1.00 25.00           C
ATOM    101  CA  SER   101      24.716  14.959  -5.024  1.00 25.00           C
ATOM    102  CA  THR   102      27.167  17.469  -6.494  1.00 25.00           C
ATOM    103  CA  GLU   103      27.139  20.140  -3.776  1.00 25.00           C
ATOM    104  CA  THR   104      23.413  20.591  -4.180  1.00 25.00           C
ATOM    105  CA  THR   105      23.332  24.343  -3.910  1.00 25.00           C
ATOM    106  CA  TYR   106      19.996  25.749  -5.032  1.00 25.00           C
ATOM    107  CA  TRP   107      17.815  27.402  -7.626  1.00 25.00           C
ATOM    108  CA  GLY   108      14.735  26.441  -5.537  1.00 25.00           C
ATOM    109  CA  VAL   109      15.475  22.918  -6.867  1.00 25.00           C
ATOM    110  CA  THR   110      13.621  20.326  -8.945  1.00 25.00           C
ATOM    111  CA  ASP   111      12.275  21.555 -12.315  1.00 25.00           C
ATOM    112  CA  SER   112      10.637  18.396 -13.675  1.00 25.00           C
ATOM    113  CA  THR   113       9.755  17.159 -10.219  1.00 25.00           C
ATOM    114  CA  THR   114       7.586  16.960  -7.067  1.00 25.00           C
ATOM    115  CA  GLY   115       4.772  15.316  -9.078  1.00 25.00           C
ATOM    116  CA  TRP   116       7.252  12.779 -10.522  1.00 25.00           C
ATOM    117  CA  LEU   117       8.539  11.997  -7.000  1.00 25.00           C
ATOM    118  CA  LEU   118       4.946  11.499  -5.771  1.00 25.00           C
ATOM    119  CA  GLU   119       4.241   9.147  -8.709  1.00 25.00           C
ATOM    120  CA  ALA   120       7.412   7.155  -7.909  1.00 25.00           C
ATOM    121  CA  ALA   121       6.349   6.892  -4.238  1.00 25.00           C
ATOM    122  CA  VAL   122       2.881   5.669  -5.305  1.00 25.00           C
ATOM    123  CA  HIS   123       4.481   3.050  -7.595  1.00 25.00           C
ATOM    124  CA  LEU   124       6.729   1.877  -4.724  1.00 25.00           C
ATOM    125  CA  TYR   125       3.681   1.596  -2.422  1.00 25.00           C
ATOM    126  CA  HIS   126       1.827  -0.439  -5.083  1.00 25.00           C
ATOM    127  CA  HIS   127       4.851  -2.759  -5.452  1.00 25.00           C
ATOM    128  CA  ARG   128       4.989  -3.225  -1.654  1.00 25.00           C
ATOM    129  CA  SER   129       1.250  -4.050  -1.594  1.00 25.00           C
ATOM    130  CA  GLN   130       1.745  -6.605  -4.404  1.00 25.00           C
ATOM    131  CA  LEU   131       4.647  -8.199  -2.478  1.00 25.00           C
ATOM    132  CA  LEU   132       2.478  -8.397   0.672  1.00 25.00           C
ATOM    133  CA  ASP   133      -0.337 -10.041  -1.339  1.00 25.00           C
ATOM    134  CA  TYR   134       2.144 -12.578  -2.782  1.00 25.00           C
ATOM    135  CA  LEU   135       3.431 -13.360   0.740  1.00 25.00           C
ATOM    136  CA  ASN   136      -0.162 -13.858   1.970  1.00 25.00           C
ATOM    137  CA  LEU   137      -0.868 -16.210  -0.970  1.00 25.00           C
ATOM    138  CA  LEU   138       2.304 -18.202  -0.168  1.00 25.00           C
ATOM    139  CA  GLY   139       3.300 -17.546   3.496  1.00 25.00           C
ATOM    140  CA  TYR   140       1.457 -19.668   6.049  1.00 25.00           C
ATOM    141  CA  ASP   141      -1.059 -21.141   8.499  1.00 25.00           C
ATOM    142  CA  ILE   142      -0.893 -21.058  12.349  1.00 25.00           C
ATOM    143  CA  LYS   143       2.181 -18.806  12.327  1.00 25.00           C
ATOM    144  CA  LEU   144       3.853 -15.657  13.603  1.00 25.00           C
ATOM    145  CA  ASP   145       2.098 -13.289  15.983  1.00 25.00           C
ATOM    146  CA  LEU   146       4.971 -12.041  18.121  1.00 25.00           C
ATOM    147  CA  PHE   147       7.681 -11.095  15.660  1.00 25.00           C
ATOM    148  CA  GLU   148       6.190  -8.439  13.407  1.00 25.00           C
TER
END
