
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS393_4
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS393_4.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38         2 - 39          5.00    30.82
  LCS_AVERAGE:     24.28

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31       111 - 141         1.94    20.18
  LCS_AVERAGE:     12.49

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       112 - 139         0.98    20.07
  LONGEST_CONTINUOUS_SEGMENT:    28       113 - 140         0.95    20.09
  LCS_AVERAGE:      9.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3   15   33     3    3    4    7   11   13   20   26   26   29   31   32   35   39   41   46   48   50   54   55 
LCS_GDT     T       2     T       2     12   15   38     8   13   13   14   15   18   19   26   27   29   31   34   35   39   41   46   48   50   54   55 
LCS_GDT     D       3     D       3     12   15   38     9   13   13   14   15   18   19   24   27   29   30   34   35   39   41   45   48   50   54   55 
LCS_GDT     W       4     W       4     12   15   38     9   13   13   14   15   18   19   24   27   29   31   34   35   39   39   41   43   44   52   53 
LCS_GDT     Q       5     Q       5     12   15   38     9   13   13   14   15   18   19   26   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     Q       6     Q       6     12   15   38     9   13   13   14   15   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     A       7     A       7     12   15   38     9   13   13   14   15   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     L       8     L       8     12   15   38     9   13   13   14   15   18   19   26   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     D       9     D       9     12   15   38     9   13   13   14   15   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     R      10     R      10     12   15   38     9   13   13   14   15   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     H      11     H      11     12   15   38     9   13   13   14   15   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     V      12     V      12     12   15   38     9   13   13   14   15   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     G      13     G      13     12   15   38     6   13   13   14   15   16   18   22   26   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     V      14     V      14      3   15   38     3    3    4    7   10   16   18   19   24   26   29   32   35   39   41   47   48   50   54   55 
LCS_GDT     G      15     G      15      3   15   38     3    3    4    5   12   15   18   19   23   26   29   32   35   39   41   47   48   50   54   55 
LCS_GDT     V      16     V      16     11   13   38     7   11   11   11   14   17   19   23   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     R      17     R      17     11   13   38    10   11   11   11   14   17   19   24   27   29   31   34   35   38   41   47   48   50   54   55 
LCS_GDT     T      18     T      18     11   13   38    10   11   11   11   14   18   19   24   27   29   31   34   35   38   41   47   48   50   54   55 
LCS_GDT     T      19     T      19     11   13   38    10   11   11   11   14   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     R      20     R      20     11   13   38    10   11   11   11   14   18   19   24   27   29   31   34   35   38   41   47   48   50   54   55 
LCS_GDT     D      21     D      21     11   13   38    10   11   11   11   14   18   19   24   27   29   31   34   35   38   40   42   44   49   52   55 
LCS_GDT     L      22     L      22     11   13   38    10   11   11   11   14   18   19   24   27   29   31   34   35   38   41   47   48   50   54   55 
LCS_GDT     I      23     I      23     11   13   38    10   11   11   11   14   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     R      24     R      24     11   13   38    10   11   11   11   12   17   19   23   27   29   31   34   35   37   39   41   43   48   50   55 
LCS_GDT     L      25     L      25     11   13   38    10   11   11   11   13   17   19   23   27   29   31   34   35   37   39   41   43   44   47   50 
LCS_GDT     I      26     I      26     11   13   38    10   11   11   11   12   14   18   22   25   29   31   34   35   37   41   47   48   49   52   55 
LCS_GDT     Q      27     Q      27      3   13   38     3    4    5    5   12   14   18   22   25   29   31   34   35   37   41   47   48   49   52   55 
LCS_GDT     P      28     P      28      4   13   38     3    3    4    7    8   10   17   22   25   29   31   34   35   37   37   41   42   46   49   51 
LCS_GDT     E      29     E      29      4    8   38     3    4    5    7    8   12   18   24   27   29   31   34   35   39   39   41   42   46   52   55 
LCS_GDT     D      30     D      30      4    8   38     3    4    7   11   14   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     W      31     W      31      4    8   38     3    4    5   11   14   18   19   24   27   29   31   34   35   39   41   47   48   50   54   55 
LCS_GDT     D      32     D      32      4    8   38     3    4    5    5    7   11   17   24   26   29   31   34   35   39   41   46   48   50   54   55 
LCS_GDT     K      33     K      33      3    6   38     3    3    3    5    6    7   15   19   23   25   27   30   35   38   41   46   48   50   54   54 
LCS_GDT     R      34     R      34      3    5   38     3    3    3    4    6   12   15   19   23   25   27   29   33   35   36   41   43   46   49   53 
LCS_GDT     P      35     P      35      3    7   38     3    3    3    4   11   16   18   19   22   26   31   32   34   38   39   42   44   48   50   53 
LCS_GDT     I      36     I      36      3    7   38     3   13   13   14   15   16   18   21   23   25   27   32   34   38   39   42   44   48   50   53 
LCS_GDT     S      37     S      37      3    7   38     3    5    7   14   15   16   18   20   23   25   27   30   34   35   39   41   43   48   50   53 
LCS_GDT     G      38     G      38      3    7   38     3    4    7   14   15   17   19   23   25   29   31   34   35   35   39   41   43   48   50   53 
LCS_GDT     K      39     K      39      3    7   38     1    4    7   10   14   17   19   23   27   29   31   34   35   36   39   42   44   48   50   53 
LCS_GDT     R      40     R      40      3   14   37     2    3    6    6   13   18   19   24   27   29   31   34   35   38   40   42   44   48   51   54 
LCS_GDT     S      41     S      41     13   18   37    10   12   12   15   16   19   22   26   27   29   31   34   35   38   41   46   48   50   54   54 
LCS_GDT     V      42     V      42     13   18   36    10   12   12   15   16   19   22   26   26   29   31   33   35   38   40   44   48   50   54   54 
LCS_GDT     Y      43     Y      43     13   18   36    10   12   12   15   16   19   22   26   26   29   31   33   35   38   41   47   48   50   54   55 
LCS_GDT     E      44     E      44     13   18   36    10   12   12   15   16   19   22   26   26   29   31   33   35   38   41   47   48   50   54   55 
LCS_GDT     V      45     V      45     13   18   36    10   12   12   15   17   19   22   26   27   29   31   34   35   38   41   46   48   50   54   55 
LCS_GDT     A      46     A      46     13   18   36    10   12   12   15   17   19   22   26   26   29   31   33   35   38   41   47   48   50   54   55 
LCS_GDT     V      47     V      47     13   18   36    10   12   12   15   17   19   22   26   26   29   31   33   35   39   41   47   48   50   54   55 
LCS_GDT     H      48     H      48     13   18   36    10   12   12   15   17   19   22   26   26   29   31   33   37   39   41   47   48   50   54   55 
LCS_GDT     L      49     L      49     13   18   36    10   12   12   15   17   19   22   27   30   34   35   38   39   41   43   47   48   52   58   62 
LCS_GDT     A      50     A      50     13   18   36    10   12   12   15   17   19   31   32   34   35   36   38   40   42   44   47   51   54   58   62 
LCS_GDT     V      51     V      51     13   18   36     9   12   12   15   17   28   29   31   33   35   36   38   39   41   43   47   49   53   58   62 
LCS_GDT     L      52     L      52     13   18   36     8   12   12   15   17   19   22   26   26   29   31   33   35   39   41   47   48   50   54   55 
LCS_GDT     L      53     L      53     13   18   36     4   11   12   15   17   19   22   26   26   29   31   32   35   39   41   47   48   50   56   61 
LCS_GDT     E      54     E      54     11   18   36     8   11   12   15   17   19   22   22   24   29   33   36   39   40   43   47   49   53   58   62 
LCS_GDT     A      55     A      55     11   18   36     8   11   12   15   17   19   22   26   26   29   31   33   35   39   41   47   48   50   54   55 
LCS_GDT     D      56     D      56     11   18   36     8   11   12   13   17   19   22   26   26   29   31   33   35   39   41   47   48   50   54   55 
LCS_GDT     L      57     L      57     11   18   36     8   11   12   13   17   19   22   26   26   29   31   33   35   39   41   47   48   50   54   55 
LCS_GDT     R      58     R      58     11   18   36     8   11   12   13   17   19   22   26   26   29   31   33   35   39   41   47   48   50   54   55 
LCS_GDT     I      59     I      59     11   18   36     8   11   12   13   17   19   22   26   26   29   31   32   35   39   41   47   48   50   54   55 
LCS_GDT     A      60     A      60     11   18   36     8   11   12   13   17   19   22   26   26   29   31   32   35   39   41   47   48   50   54   55 
LCS_GDT     T      61     T      61     11   18   36     5   11   12   13   17   19   22   26   26   29   31   33   35   39   41   47   48   50   54   55 
LCS_GDT     G      62     G      62      4   13   36     3    3    6    9   12   16   18   22   25   28   30   33   35   39   41   47   48   50   54   55 
LCS_GDT     A      63     A      63      4   12   36     1    5    7   10   13   16   18   22   25   28   30   33   35   39   41   47   48   50   54   55 
LCS_GDT     T      64     T      64      8   12   36     1    3    9   12   13   16   18   21   24   26   30   33   35   38   41   47   48   50   54   55 
LCS_GDT     A      65     A      65      9   12   36     8    9    9   12   13   16   18   21   24   26   30   33   35   38   41   47   48   50   54   55 
LCS_GDT     D      66     D      66      9   12   36     8    9    9   12   13   16   18   21   24   26   30   32   35   38   40   43   45   49   50   54 
LCS_GDT     E      67     E      67      9   12   36     8    9    9   12   13   16   18   21   24   26   30   33   35   38   40   47   48   50   54   55 
LCS_GDT     M      68     M      68      9   12   36     8    9    9   12   13   16   18   21   24   26   30   33   35   38   41   47   48   50   54   55 
LCS_GDT     A      69     A      69      9   12   36     8    9    9   12   13   16   18   21   24   26   30   32   35   38   40   43   45   49   53   54 
LCS_GDT     Q      70     Q      70      9   12   36     8    9    9   12   13   16   18   21   24   26   30   33   35   38   40   43   45   49   51   54 
LCS_GDT     F      71     F      71      9   12   36     8    9    9   12   13   16   18   21   24   26   30   33   35   38   41   47   48   50   54   55 
LCS_GDT     Y      72     Y      72      9   12   36     3    4    7   12   13   16   18   21   24   26   30   33   35   38   40   43   47   50   54   54 
LCS_GDT     A      73     A      73      9   12   36     8    9    9   12   13   16   18   21   23   25   30   32   35   38   40   43   45   49   50   54 
LCS_GDT     V      74     V      74      3    5   36     3    3    5    5   10   10   13   18   22   26   29   32   35   38   40   42   45   47   53   54 
LCS_GDT     P      75     P      75      3    5   36     3    3    4    4    5   10   13   16   21   24   29   31   34   35   36   39   44   48   53   55 
LCS_GDT     V      76     V      76      3    6   32     3    3    4    4    5    7    7   11   17   21   25   31   34   35   36   40   46   49   56   62 
LCS_GDT     L      77     L      77      5   25   32     5    5    9   14   22   24   24   24   28   30   37   44   48   49   50   51   52   54   58   62 
LCS_GDT     P      78     P      78     21   25   32     5    5   16   21   22   24   25   27   31   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     E      79     E      79     21   25   32     5    5    8   18   22   24   25   27   29   32   37   44   48   49   50   51   52   54   57   62 
LCS_GDT     Q      80     Q      80     21   25   32    18   19   20   21   22   24   25   27   29   32   34   39   42   44   49   51   52   54   56   62 
LCS_GDT     L      81     L      81     21   25   32    18   19   20   21   22   24   25   27   29   32   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     V      82     V      82     21   25   32    18   19   20   21   22   24   25   27   29   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     D      83     D      83     21   25   32    18   19   20   21   22   24   25   27   29   32   37   41   42   49   50   51   52   54   56   61 
LCS_GDT     R      84     R      84     21   25   32    18   19   20   21   22   24   25   27   29   32   37   41   48   49   50   51   52   54   58   62 
LCS_GDT     L      85     L      85     21   25   32    18   19   20   21   22   24   26   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     D      86     D      86     21   25   32    18   19   20   21   22   24   25   27   29   38   41   44   48   49   50   51   52   54   57   62 
LCS_GDT     Q      87     Q      87     21   25   32    18   19   20   21   22   24   25   27   29   32   38   44   48   49   50   51   52   54   56   62 
LCS_GDT     S      88     S      88     21   25   32    18   19   20   21   22   24   25   27   29   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     W      89     W      89     21   25   32    18   19   20   21   25   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Q      90     Q      90     21   25   32    18   19   20   21   22   24   25   27   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Y      91     Y      91     21   25   32    18   19   20   21   22   24   25   27   29   32   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Y      92     Y      92     21   25   32    18   19   21   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Q      93     Q      93     21   25   32    18   19   20   21   28   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     D      94     D      94     21   25   32    18   19   20   21   22   24   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     R      95     R      95     21   25   32    18   19   20   28   29   30   31   33   34   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L      96     L      96     21   25   32    18   19   20   21   22   24   25   27   33   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     M      97     M      97     21   25   32     3   19   20   21   22   24   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     A      98     A      98     21   25   32    18   19   20   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     D      99     D      99     21   25   32     3    4    4   21   22   24   24   31   33   33   36   41   43   47   50   51   52   54   58   62 
LCS_GDT     F     100     F     100     21   25   31     3   15   20   21   22   24   24   27   32   34   35   37   40   42   45   47   51   54   58   62 
LCS_GDT     S     101     S     101      4   25   31     1    3    5   10   14   19   22   24   27   30   32   35   38   41   44   47   51   54   58   62 
LCS_GDT     T     102     T     102      4    5   29     3    3    4    4    5    6   10   12   15   18   24   29   33   35   38   42   45   49   52   56 
LCS_GDT     E     103     E     103      4    5   29     3    3    3    5    6   10   13   15   18   23   27   30   33   35   38   42   45   49   52   56 
LCS_GDT     T     104     T     104      4    5   29     3    3    3    4    6   10   13   16   18   24   27   30   33   35   38   42   45   49   52   56 
LCS_GDT     T     105     T     105      4    5   29     3    3    3    5    6    7   10   12   13   15   18   20   22   23   26   30   34   36   44   45 
LCS_GDT     Y     106     Y     106      4    7   28     3    3    5    6    6    7    8   12   13   15   18   20   23   25   30   33   37   41   43   47 
LCS_GDT     W     107     W     107      4    7   22     3    3    5    6    6    7    8   10   13   15   19   21   23   25   27   30   34   36   39   42 
LCS_GDT     G     108     G     108      4    7   34     3    3    5    6    7   10   11   12   17   19   22   27   30   31   36   40   42   44   49   55 
LCS_GDT     V     109     V     109      4    7   37     3    3    5    6    7   10   11   12   17   19   22   27   30   34   37   42   51   52   56   62 
LCS_GDT     T     110     T     110      3    7   37     3    3    4    5    7   10   16   19   25   29   31   33   35   39   41   47   51   54   58   62 
LCS_GDT     D     111     D     111      3   31   37     3    3    4    5    6    8   12   19   30   34   35   36   38   41   43   43   49   53   58   62 
LCS_GDT     S     112     S     112     28   31   37     2    3    4    5   11   16   31   33   34   35   38   38   40   42   44   45   48   52   57   62 
LCS_GDT     T     113     T     113     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     T     114     T     114     28   31   37    19   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   53   58   62 
LCS_GDT     G     115     G     115     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   47   49   50   51   52   53   58   62 
LCS_GDT     W     116     W     116     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     117     L     117     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     118     L     118     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     E     119     E     119     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     A     120     A     120     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     A     121     A     121     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     V     122     V     122     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     H     123     H     123     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     124     L     124     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Y     125     Y     125     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     H     126     H     126     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     H     127     H     127     28   31   37    18   26   26   27   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     R     128     R     128     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     S     129     S     129     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Q     130     Q     130     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     131     L     131     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     132     L     132     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     D     133     D     133     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Y     134     Y     134     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     135     L     135     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     N     136     N     136     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     137     L     137     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     L     138     L     138     28   31   37    24   26   26   28   29   30   31   33   35   38   41   44   48   49   50   51   52   53   58   62 
LCS_GDT     G     139     G     139     28   31   37     3    5   25   27   29   30   31   33   35   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     Y     140     Y     140     28   31   37     3    3    4    5   28   30   31   33   34   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     D     141     D     141      4   31   37     1    5    7    7    9   22   30   33   34   38   41   44   48   49   50   51   52   54   58   62 
LCS_GDT     I     142     I     142      3    6   37     2    3    3    5    5    6   10   12   15   17   20   26   29   40   42   43   51   54   58   62 
LCS_GDT     K     143     K     143      3    6   37     1    3    4    7   15   16   18   21   23   27   35   37   39   41   44   47   51   54   58   62 
LCS_GDT     L     144     L     144      3    6   37     3    3    4    6   14   17   21   26   26   29   31   37   39   41   43   44   51   53   58   62 
LCS_GDT     D     145     D     145      3    6   37     3    3    3    8   13   16   21   26   26   29   31   32   34   38   39   43   46   52   57   62 
LCS_GDT     L     146     L     146      3    6   37     3    3    3    5    7    9   21   26   26   29   31   32   34   38   39   41   43   50   56   60 
LCS_GDT     F     147     F     147      3    4   36     0    3    6    8   13   16   21   26   26   29   31   32   34   38   39   41   43   45   56   60 
LCS_AVERAGE  LCS_A:  15.42  (   9.48   12.49   24.28 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     26     26     28     29     30     31     33     35     38     41     44     48     49     50     51     52     54     58     62 
GDT PERCENT_CA  16.33  17.69  17.69  19.05  19.73  20.41  21.09  22.45  23.81  25.85  27.89  29.93  32.65  33.33  34.01  34.69  35.37  36.73  39.46  42.18
GDT RMS_LOCAL    0.33   0.36   0.36   0.91   0.83   0.97   1.23   1.63   2.33   2.76   3.07   3.74   4.32   4.34   4.45   4.58   4.73   5.63   6.16   6.44
GDT RMS_ALL_CA  20.07  20.06  20.06  19.97  20.00  19.99  19.97  19.95  20.28  19.99  20.08  20.25  20.21  20.25  20.29  20.29  20.17  19.56  19.28  19.28

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         46.079
LGA    T       2      T       2         45.940
LGA    D       3      D       3         43.171
LGA    W       4      W       4         38.946
LGA    Q       5      Q       5         37.622
LGA    Q       6      Q       6         36.030
LGA    A       7      A       7         32.548
LGA    L       8      L       8         29.350
LGA    D       9      D       9         28.555
LGA    R      10      R      10         26.250
LGA    H      11      H      11         23.013
LGA    V      12      V      12         21.814
LGA    G      13      G      13         21.534
LGA    V      14      V      14         19.319
LGA    G      15      G      15         18.472
LGA    V      16      V      16         15.572
LGA    R      17      R      17         13.231
LGA    T      18      T      18         13.832
LGA    T      19      T      19         12.341
LGA    R      20      R      20         13.018
LGA    D      21      D      21         14.678
LGA    L      22      L      22         14.997
LGA    I      23      I      23         16.784
LGA    R      24      R      24         20.087
LGA    L      25      L      25         22.436
LGA    I      26      I      26         23.057
LGA    Q      27      Q      27         29.674
LGA    P      28      P      28         34.753
LGA    E      29      E      29         40.440
LGA    D      30      D      30         36.985
LGA    W      31      W      31         35.510
LGA    D      32      D      32         40.693
LGA    K      33      K      33         42.964
LGA    R      34      R      34         40.748
LGA    P      35      P      35         37.134
LGA    I      36      I      36         33.684
LGA    S      37      S      37         35.791
LGA    G      38      G      38         33.134
LGA    K      39      K      39         26.924
LGA    R      40      R      40         26.598
LGA    S      41      S      41         27.216
LGA    V      42      V      42         21.058
LGA    Y      43      Y      43         21.258
LGA    E      44      E      44         21.751
LGA    V      45      V      45         17.113
LGA    A      46      A      46         12.284
LGA    V      47      V      47         13.777
LGA    H      48      H      48         13.553
LGA    L      49      L      49          8.106
LGA    A      50      A      50          5.232
LGA    V      51      V      51          6.681
LGA    L      52      L      52         10.138
LGA    L      53      L      53          9.857
LGA    E      54      E      54          7.909
LGA    A      55      A      55         10.936
LGA    D      56      D      56         16.504
LGA    L      57      L      57         16.492
LGA    R      58      R      58         14.006
LGA    I      59      I      59         19.856
LGA    A      60      A      60         23.952
LGA    T      61      T      61         22.978
LGA    G      62      G      62         23.040
LGA    A      63      A      63         18.065
LGA    T      64      T      64         15.900
LGA    A      65      A      65         15.945
LGA    D      66      D      66         18.729
LGA    E      67      E      67         18.445
LGA    M      68      M      68         14.296
LGA    A      69      A      69         15.548
LGA    Q      70      Q      70         18.820
LGA    F      71      F      71         16.382
LGA    Y      72      Y      72         16.385
LGA    A      73      A      73         18.004
LGA    V      74      V      74         17.832
LGA    P      75      P      75         17.032
LGA    V      76      V      76         18.675
LGA    L      77      L      77         19.516
LGA    P      78      P      78         15.427
LGA    E      79      E      79         20.879
LGA    Q      80      Q      80         21.057
LGA    L      81      L      81         14.494
LGA    V      82      V      82         15.683
LGA    D      83      D      83         19.258
LGA    R      84      R      84         14.922
LGA    L      85      L      85          9.552
LGA    D      86      D      86         14.117
LGA    Q      87      Q      87         14.365
LGA    S      88      S      88          7.921
LGA    W      89      W      89          7.606
LGA    Q      90      Q      90         11.488
LGA    Y      91      Y      91          8.300
LGA    Y      92      Y      92          2.147
LGA    Q      93      Q      93          7.552
LGA    D      94      D      94          7.382
LGA    R      95      R      95          1.996
LGA    L      96      L      96          5.168
LGA    M      97      M      97          7.186
LGA    A      98      A      98          1.919
LGA    D      99      D      99          6.224
LGA    F     100      F     100          9.370
LGA    S     101      S     101         13.002
LGA    T     102      T     102         18.920
LGA    E     103      E     103         21.327
LGA    T     104      T     104         24.965
LGA    T     105      T     105         28.054
LGA    Y     106      Y     106         28.363
LGA    W     107      W     107         28.254
LGA    G     108      G     108         22.354
LGA    V     109      V     109         17.958
LGA    T     110      T     110         13.020
LGA    D     111      D     111          8.207
LGA    S     112      S     112          3.910
LGA    T     113      T     113          1.481
LGA    T     114      T     114          1.223
LGA    G     115      G     115          1.456
LGA    W     116      W     116          1.627
LGA    L     117      L     117          1.448
LGA    L     118      L     118          1.398
LGA    E     119      E     119          1.270
LGA    A     120      A     120          1.456
LGA    A     121      A     121          1.189
LGA    V     122      V     122          1.151
LGA    H     123      H     123          0.893
LGA    L     124      L     124          1.278
LGA    Y     125      Y     125          1.256
LGA    H     126      H     126          0.852
LGA    H     127      H     127          1.713
LGA    R     128      R     128          1.256
LGA    S     129      S     129          1.170
LGA    Q     130      Q     130          1.429
LGA    L     131      L     131          1.646
LGA    L     132      L     132          1.257
LGA    D     133      D     133          1.474
LGA    Y     134      Y     134          1.886
LGA    L     135      L     135          1.762
LGA    N     136      N     136          1.315
LGA    L     137      L     137          1.995
LGA    L     138      L     138          2.424
LGA    G     139      G     139          3.967
LGA    Y     140      Y     140          2.593
LGA    D     141      D     141          3.785
LGA    I     142      I     142          9.232
LGA    K     143      K     143          7.977
LGA    L     144      L     144          8.199
LGA    D     145      D     145         12.088
LGA    L     146      L     146         15.166
LGA    F     147      F     147         17.542

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     33    1.63    23.469    20.739     1.907

LGA_LOCAL      RMSD =  1.631  Number of atoms =   33  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.688  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 15.989  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.313846 * X  +   0.303018 * Y  +  -0.899823 * Z  +  10.536937
  Y_new =   0.894994 * X  +   0.221992 * Y  +   0.386918 * Z  +  -1.352527
  Z_new =   0.316997 * X  +  -0.926768 * Y  +  -0.201528 * Z  +  -5.338290 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.784915    1.356677  [ DEG:  -102.2681     77.7319 ]
  Theta =  -0.322562   -2.819031  [ DEG:   -18.4814   -161.5186 ]
  Phi   =   1.233526   -1.908067  [ DEG:    70.6758   -109.3242 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS393_4                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS393_4.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   33   1.63  20.739    15.99
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS393_4
PFRMAT TS
TARGET T0369
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      13.780 -27.592 -13.795  1.00 25.00           C
ATOM      2  CA  THR     2      17.047 -25.735 -13.786  1.00 25.00           C
ATOM      3  CA  ASP     3      18.640 -22.427 -14.820  1.00 25.00           C
ATOM      4  CA  TRP     4      16.069 -20.929 -12.409  1.00 25.00           C
ATOM      5  CA  GLN     5      17.634 -22.868  -9.499  1.00 25.00           C
ATOM      6  CA  GLN     6      21.108 -21.599 -10.489  1.00 25.00           C
ATOM      7  CA  ALA     7      19.785 -18.007 -10.622  1.00 25.00           C
ATOM      8  CA  LEU     8      18.217 -18.430  -7.153  1.00 25.00           C
ATOM      9  CA  ASP     9      21.533 -19.781  -5.792  1.00 25.00           C
ATOM     10  CA  ARG    10      23.397 -16.794  -7.301  1.00 25.00           C
ATOM     11  CA  HIS    11      20.882 -14.387  -5.706  1.00 25.00           C
ATOM     12  CA  VAL    12      20.396 -15.671  -2.166  1.00 25.00           C
ATOM     13  CA  GLY    13      23.790 -17.292  -1.461  1.00 25.00           C
ATOM     14  CA  VAL    14      24.653 -15.120   1.460  1.00 25.00           C
ATOM     15  CA  GLY    15      24.471 -11.519   2.502  1.00 25.00           C
ATOM     16  CA  VAL    16      25.473  -9.732  -0.684  1.00 25.00           C
ATOM     17  CA  ARG    17      27.475  -6.691  -1.778  1.00 25.00           C
ATOM     18  CA  THR    18      24.505  -6.142  -4.134  1.00 25.00           C
ATOM     19  CA  THR    19      22.153  -5.808  -1.130  1.00 25.00           C
ATOM     20  CA  ARG    20      24.522  -3.263   0.474  1.00 25.00           C
ATOM     21  CA  ASP    21      24.634  -1.271  -2.795  1.00 25.00           C
ATOM     22  CA  LEU    22      20.809  -1.299  -2.972  1.00 25.00           C
ATOM     23  CA  ILE    23      20.608  -0.071   0.649  1.00 25.00           C
ATOM     24  CA  ARG    24      23.086   2.741  -0.139  1.00 25.00           C
ATOM     25  CA  LEU    25      21.009   3.746  -3.196  1.00 25.00           C
ATOM     26  CA  ILE    26      17.836   3.796  -1.054  1.00 25.00           C
ATOM     27  CA  GLN    27      19.459   5.928   1.660  1.00 25.00           C
ATOM     28  CA  PRO    28      22.886   7.408   2.302  1.00 25.00           C
ATOM     29  CA  GLU    29      23.355   9.555   5.438  1.00 25.00           C
ATOM     30  CA  ASP    30      19.610  10.359   5.477  1.00 25.00           C
ATOM     31  CA  TRP    31      18.076   8.794   8.585  1.00 25.00           C
ATOM     32  CA  ASP    32      16.721  12.156   9.617  1.00 25.00           C
ATOM     33  CA  LYS    33      19.209  12.410  12.460  1.00 25.00           C
ATOM     34  CA  ARG    34      19.017   8.908  13.857  1.00 25.00           C
ATOM     35  CA  PRO    35      16.323   6.703  15.474  1.00 25.00           C
ATOM     36  CA  ILE    36      13.593   4.509  13.854  1.00 25.00           C
ATOM     37  CA  SER    37      10.675   2.695  15.577  1.00 25.00           C
ATOM     38  CA  GLY    38       7.809   2.829  13.036  1.00 25.00           C
ATOM     39  CA  LYS    39       6.846   2.591   9.385  1.00 25.00           C
ATOM     40  CA  ARG    40       8.629   5.048   7.051  1.00 25.00           C
ATOM     41  CA  SER    41      11.646   2.701   6.844  1.00 25.00           C
ATOM     42  CA  VAL    42       9.335  -0.238   6.018  1.00 25.00           C
ATOM     43  CA  TYR    43       7.639   1.834   3.280  1.00 25.00           C
ATOM     44  CA  GLU    44      11.059   2.757   1.825  1.00 25.00           C
ATOM     45  CA  VAL    45      12.087  -0.933   1.836  1.00 25.00           C
ATOM     46  CA  ALA    46       8.828  -1.872   0.056  1.00 25.00           C
ATOM     47  CA  VAL    47       9.451   0.846  -2.569  1.00 25.00           C
ATOM     48  CA  HIS    48      13.012  -0.456  -3.109  1.00 25.00           C
ATOM     49  CA  LEU    49      11.672  -4.018  -3.529  1.00 25.00           C
ATOM     50  CA  ALA    50       9.094  -2.776  -6.075  1.00 25.00           C
ATOM     51  CA  VAL    51      11.849  -0.941  -8.004  1.00 25.00           C
ATOM     52  CA  LEU    52      13.988  -4.118  -8.020  1.00 25.00           C
ATOM     53  CA  LEU    53      11.010  -6.146  -9.318  1.00 25.00           C
ATOM     54  CA  GLU    54      10.424  -3.561 -12.083  1.00 25.00           C
ATOM     55  CA  ALA    55      14.125  -3.727 -13.056  1.00 25.00           C
ATOM     56  CA  ASP    56      13.944  -7.551 -13.186  1.00 25.00           C
ATOM     57  CA  LEU    57      10.825  -7.354 -15.399  1.00 25.00           C
ATOM     58  CA  ARG    58      12.607  -4.895 -17.733  1.00 25.00           C
ATOM     59  CA  ILE    59      15.626  -7.243 -17.941  1.00 25.00           C
ATOM     60  CA  ALA    60      13.315 -10.183 -18.766  1.00 25.00           C
ATOM     61  CA  THR    61      12.777  -8.635 -22.206  1.00 25.00           C
ATOM     62  CA  GLY    62       9.201  -9.401 -23.341  1.00 25.00           C
ATOM     63  CA  ALA    63       8.353  -7.957 -19.931  1.00 25.00           C
ATOM     64  CA  THR    64       5.369  -6.295 -21.688  1.00 25.00           C
ATOM     65  CA  ALA    65       2.871  -8.533 -19.864  1.00 25.00           C
ATOM     66  CA  ASP    66       3.687 -12.155 -18.923  1.00 25.00           C
ATOM     67  CA  GLU    67       6.304 -10.937 -16.406  1.00 25.00           C
ATOM     68  CA  MET    68       3.753  -8.516 -14.889  1.00 25.00           C
ATOM     69  CA  ALA    69       1.196 -11.353 -14.599  1.00 25.00           C
ATOM     70  CA  GLN    70       3.810 -13.567 -12.885  1.00 25.00           C
ATOM     71  CA  PHE    71       4.634 -10.740 -10.436  1.00 25.00           C
ATOM     72  CA  TYR    72       2.233 -11.509  -7.591  1.00 25.00           C
ATOM     73  CA  ALA    73       0.246 -14.304  -9.125  1.00 25.00           C
ATOM     74  CA  VAL    74      -2.161 -11.560 -10.058  1.00 25.00           C
ATOM     75  CA  PRO    75      -5.189 -13.151 -11.727  1.00 25.00           C
ATOM     76  CA  VAL    76      -7.629 -10.343 -10.925  1.00 25.00           C
ATOM     77  CA  LEU    77      -7.068  -6.630 -10.861  1.00 25.00           C
ATOM     78  CA  PRO    78      -3.641  -7.345 -12.454  1.00 25.00           C
ATOM     79  CA  GLU    79      -4.197  -4.346 -14.770  1.00 25.00           C
ATOM     80  CA  GLN    80      -4.239  -1.990 -11.751  1.00 25.00           C
ATOM     81  CA  LEU    81      -0.978  -3.535 -10.469  1.00 25.00           C
ATOM     82  CA  VAL    82       0.621  -3.083 -13.919  1.00 25.00           C
ATOM     83  CA  ASP    83      -0.506   0.577 -13.989  1.00 25.00           C
ATOM     84  CA  ARG    84       0.977   1.124 -10.500  1.00 25.00           C
ATOM     85  CA  LEU    85       4.279  -0.454 -11.628  1.00 25.00           C
ATOM     86  CA  ASP    86       4.341   1.818 -14.710  1.00 25.00           C
ATOM     87  CA  GLN    87       3.708   4.879 -12.498  1.00 25.00           C
ATOM     88  CA  SER    88       6.556   3.815 -10.169  1.00 25.00           C
ATOM     89  CA  TRP    89       8.890   3.396 -13.176  1.00 25.00           C
ATOM     90  CA  GLN    90       7.921   6.876 -14.446  1.00 25.00           C
ATOM     91  CA  TYR    91       8.613   8.359 -10.984  1.00 25.00           C
ATOM     92  CA  TYR    92      12.032   6.635 -10.902  1.00 25.00           C
ATOM     93  CA  GLN    93      12.842   8.022 -14.379  1.00 25.00           C
ATOM     94  CA  ASP    94      11.832  11.535 -13.238  1.00 25.00           C
ATOM     95  CA  ARG    95      14.064  11.200 -10.144  1.00 25.00           C
ATOM     96  CA  LEU    96      16.989  10.075 -12.345  1.00 25.00           C
ATOM     97  CA  MET    97      16.432  13.073 -14.660  1.00 25.00           C
ATOM     98  CA  ALA    98      16.390  15.428 -11.641  1.00 25.00           C
ATOM     99  CA  ASP    99      19.651  13.884 -10.360  1.00 25.00           C
ATOM    100  CA  PHE   100      18.860  15.433  -6.948  1.00 25.00           C
ATOM    101  CA  SER   101      20.649  18.646  -8.077  1.00 25.00           C
ATOM    102  CA  THR   102      23.538  21.003  -7.478  1.00 25.00           C
ATOM    103  CA  GLU   103      20.755  23.354  -6.206  1.00 25.00           C
ATOM    104  CA  THR   104      18.832  25.470  -3.648  1.00 25.00           C
ATOM    105  CA  THR   105      19.057  28.791  -5.369  1.00 25.00           C
ATOM    106  CA  TYR   106      17.256  28.423  -8.749  1.00 25.00           C
ATOM    107  CA  TRP   107      14.473  29.659 -11.027  1.00 25.00           C
ATOM    108  CA  GLY   108      10.705  29.181 -10.807  1.00 25.00           C
ATOM    109  CA  VAL   109       9.893  25.689  -9.715  1.00 25.00           C
ATOM    110  CA  THR   110      10.820  22.451 -11.441  1.00 25.00           C
ATOM    111  CA  ASP   111       7.795  21.938 -13.735  1.00 25.00           C
ATOM    112  CA  SER   112       6.377  18.391 -13.624  1.00 25.00           C
ATOM    113  CA  THR   113       7.381  18.138  -9.904  1.00 25.00           C
ATOM    114  CA  THR   114       7.336  17.490  -6.129  1.00 25.00           C
ATOM    115  CA  GLY   115       3.642  16.497  -6.320  1.00 25.00           C
ATOM    116  CA  TRP   116       4.408  14.110  -9.216  1.00 25.00           C
ATOM    117  CA  LEU   117       7.273  12.553  -7.207  1.00 25.00           C
ATOM    118  CA  LEU   118       4.949  12.101  -4.196  1.00 25.00           C
ATOM    119  CA  GLU   119       2.329  10.436  -6.438  1.00 25.00           C
ATOM    120  CA  ALA   120       5.000   8.087  -7.857  1.00 25.00           C
ATOM    121  CA  ALA   121       6.130   7.189  -4.310  1.00 25.00           C
ATOM    122  CA  VAL   122       2.504   6.470  -3.310  1.00 25.00           C
ATOM    123  CA  HIS   123       2.070   4.239  -6.392  1.00 25.00           C
ATOM    124  CA  LEU   124       5.285   2.353  -5.509  1.00 25.00           C
ATOM    125  CA  TYR   125       4.039   1.860  -1.921  1.00 25.00           C
ATOM    126  CA  HIS   126       0.695   0.537  -3.237  1.00 25.00           C
ATOM    127  CA  HIS   127       2.540  -1.890  -5.556  1.00 25.00           C
ATOM    128  CA  ARG   128       4.681  -3.104  -2.622  1.00 25.00           C
ATOM    129  CA  SER   129       1.531  -3.634  -0.509  1.00 25.00           C
ATOM    130  CA  GLN   130      -0.080  -5.616  -3.364  1.00 25.00           C
ATOM    131  CA  LEU   131       3.067  -7.777  -3.673  1.00 25.00           C
ATOM    132  CA  LEU   132       3.022  -8.424   0.102  1.00 25.00           C
ATOM    133  CA  ASP   133      -0.671  -9.418  -0.089  1.00 25.00           C
ATOM    134  CA  TYR   134       0.094 -11.805  -2.985  1.00 25.00           C
ATOM    135  CA  LEU   135       2.959 -13.361  -0.976  1.00 25.00           C
ATOM    136  CA  ASN   136       0.636 -13.814   2.035  1.00 25.00           C
ATOM    137  CA  LEU   137      -1.985 -15.478  -0.207  1.00 25.00           C
ATOM    138  CA  LEU   138       0.686 -17.828  -1.626  1.00 25.00           C
ATOM    139  CA  GLY   139       3.201 -18.221   1.212  1.00 25.00           C
ATOM    140  CA  TYR   140       1.306 -18.222   4.512  1.00 25.00           C
ATOM    141  CA  ASP   141       2.129 -19.774   7.862  1.00 25.00           C
ATOM    142  CA  ILE   142       4.869 -22.408   8.235  1.00 25.00           C
ATOM    143  CA  LYS   143       6.367 -19.907  10.654  1.00 25.00           C
ATOM    144  CA  LEU   144       7.447 -16.257  10.993  1.00 25.00           C
ATOM    145  CA  ASP   145      10.626 -17.485  12.787  1.00 25.00           C
ATOM    146  CA  LEU   146      13.586 -17.459  10.341  1.00 25.00           C
ATOM    147  CA  PHE   147      13.572 -17.505   6.528  1.00 25.00           C
ATOM    148  CA  GLU   148      14.044 -13.712   6.927  1.00 25.00           C
TER
END
