
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS599_1
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_1.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39         1 - 39          4.93    26.59
  LCS_AVERAGE:     22.75

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31         1 - 31          1.96    27.10
  LONGEST_CONTINUOUS_SEGMENT:    31         2 - 32          1.96    27.03
  LCS_AVERAGE:     13.54

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          0.83    27.06
  LCS_AVERAGE:      9.51

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3   31   39     0    3    4   12   21   26   29   30   30   34   36   36   36   36   37   38   39   41   42   44 
LCS_GDT     T       2     T       2     25   31   39     8   20   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   45 
LCS_GDT     D       3     D       3     25   31   39     8   20   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     W       4     W       4     25   31   39     5   15   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     Q       5     Q       5     25   31   39     8   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     Q       6     Q       6     25   31   39     8   22   25   26   28   29   30   32   34   34   36   36   36   36   41   48   51   59   65   69 
LCS_GDT     A       7     A       7     25   31   39     8   22   25   26   28   29   30   32   34   34   36   36   36   42   48   51   59   61   66   69 
LCS_GDT     L       8     L       8     25   31   39     8   22   25   26   28   29   30   32   34   34   36   36   39   47   49   58   60   64   69   72 
LCS_GDT     D       9     D       9     25   31   39     8   22   25   26   28   29   30   32   34   34   40   45   51   54   58   61   63   65   69   72 
LCS_GDT     R      10     R      10     25   31   39    11   22   25   26   28   29   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     H      11     H      11     25   31   39    11   22   25   26   28   29   30   32   34   34   47   50   53   57   58   61   63   65   69   72 
LCS_GDT     V      12     V      12     25   31   39     8   22   25   26   28   29   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     G      13     G      13     25   31   39    11   22   25   26   28   29   30   32   35   43   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     V      14     V      14     25   31   39    11   22   25   26   28   29   30   32   34   35   41   44   46   48   56   60   62   64   65   68 
LCS_GDT     G      15     G      15     25   31   39    11   22   25   26   28   29   30   32   34   34   36   36   37   41   48   52   58   61   64   66 
LCS_GDT     V      16     V      16     25   31   39    11   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   55   60 
LCS_GDT     R      17     R      17     25   31   39    11   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   48 
LCS_GDT     T      18     T      18     25   31   39     9   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     T      19     T      19     25   31   39    11   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     R      20     R      20     25   31   39    11   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     D      21     D      21     25   31   39    11   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     L      22     L      22     25   31   39    11   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     I      23     I      23     25   31   39     9   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     R      24     R      24     25   31   39     9   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     L      25     L      25     25   31   39     8   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     I      26     I      26     25   31   39     8   22   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   45 
LCS_GDT     Q      27     Q      27     20   31   39     5    8    9   19   28   28   30   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     P      28     P      28      7   31   39     5    8    9    9    9   11   29   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     E      29     E      29      7   31   39     5    8    9    9   10   15   19   31   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     D      30     D      30      7   31   39     5    8   14   24   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   43 
LCS_GDT     W      31     W      31      7   31   39     5    8   25   26   28   29   30   32   34   34   36   36   36   36   37   39   39   41   43   43 
LCS_GDT     D      32     D      32      5   31   39     3    4    5    7    8   10   28   30   33   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     K      33     K      33      5    5   39     3    4    4    5    8   23   29   32   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     R      34     R      34      5    5   39     3    4    4    5    7   11   29   31   34   34   36   36   36   36   37   39   39   41   43   47 
LCS_GDT     P      35     P      35      5    6   39     3    4    4    5    6    6    9   11   15   20   30   36   36   36   37   39   39   41   43   47 
LCS_GDT     I      36     I      36      5    6   39     4    4    4    5    6    8   10   12   19   20   21   26   30   35   37   39   39   41   43   47 
LCS_GDT     S      37     S      37      4    6   39     4    4    6    9   12   14   17   21   22   22   22   23   25   27   31   37   39   41   43   47 
LCS_GDT     G      38     G      38      4    6   39     4    4    4    5    7    8   10   12   15   19   20   23   24   27   27   28   31   34   41   47 
LCS_GDT     K      39     K      39      4    6   39     4    4    4    5    7    8   10   11   13   15   17   22   23   27   27   30   34   41   43   47 
LCS_GDT     R      40     R      40      3   15   29     3    3    3    5    9   14   17   21   22   22   22   23   28   34   36   38   39   42   46   61 
LCS_GDT     S      41     S      41     13   17   29    11   12   13   14   16   17   18   21   22   22   22   23   25   27   28   30   32   39   45   50 
LCS_GDT     V      42     V      42     13   17   29    11   12   13   14   16   17   18   21   22   22   22   23   25   27   28   30   34   36   39   46 
LCS_GDT     Y      43     Y      43     13   17   29    11   12   13   14   16   17   18   21   22   22   22   23   25   27   28   30   34   42   46   61 
LCS_GDT     E      44     E      44     13   17   29    11   12   13   14   16   17   18   21   22   22   24   27   36   44   53   58   61   65   69   72 
LCS_GDT     V      45     V      45     13   17   29    11   12   13   14   16   17   18   21   22   22   24   35   44   49   55   59   62   65   69   72 
LCS_GDT     A      46     A      46     13   17   29    11   12   13   14   16   17   18   21   22   28   35   43   48   53   57   61   63   65   69   72 
LCS_GDT     V      47     V      47     13   17   29    11   12   13   14   16   17   18   23   28   33   40   50   54   57   58   61   63   65   69   72 
LCS_GDT     H      48     H      48     13   17   29    11   12   19   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L      49     L      49     13   17   38    11   12   13   14   16   19   20   29   39   44   47   52   54   57   58   61   63   65   69   72 
LCS_GDT     A      50     A      50     13   17   38    11   12   13   14   16   21   29   34   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     V      51     V      51     13   17   38    11   12   13   14   16   17   18   21   28   30   33   44   49   54   57   60   62   64   66   70 
LCS_GDT     L      52     L      52     13   17   38    11   12   13   14   16   17   24   25   28   30   33   34   36   40   50   57   59   63   66   68 
LCS_GDT     L      53     L      53     13   17   38     4    5   13   14   16   17   18   21   22   22   24   32   34   39   41   43   48   54   58   61 
LCS_GDT     E      54     E      54      5   17   38     4    5    7   14   16   17   18   21   22   22   22   24   27   31   37   41   45   49   56   60 
LCS_GDT     A      55     A      55      5   17   38     4    5    7   14   16   17   18   21   22   28   31   34   36   39   41   43   48   54   58   60 
LCS_GDT     D      56     D      56      4   17   38     3    3    4    6    7   10   13   15   17   19   24   27   29   34   36   38   42   46   49   53 
LCS_GDT     L      57     L      57      4   17   38     3    3    4    8   16   17   18   21   22   22   22   24   27   31   35   38   38   41   43   45 
LCS_GDT     R      58     R      58      4    4   38     1    7   12   14   14   16   18   21   22   28   31   33   36   39   41   42   45   48   51   54 
LCS_GDT     I      59     I      59      3   21   38     2    3    7   14   18   20   23   25   28   30   33   34   36   39   41   42   45   48   51   54 
LCS_GDT     A      60     A      60      3   22   38     3    9   11   13   13   15   18   25   28   30   33   34   36   39   41   42   45   48   50   53 
LCS_GDT     T      61     T      61      4   22   38     3    5   10   15   18   20   23   25   28   30   33   34   36   39   41   42   42   47   49   51 
LCS_GDT     G      62     G      62     14   22   38     6   13   16   18   20   21   24   25   28   30   33   34   36   39   41   42   45   48   51   54 
LCS_GDT     A      63     A      63     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   42   45   48   51   54 
LCS_GDT     T      64     T      64     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   42   45   48   51   54 
LCS_GDT     A      65     A      65     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   42   45   48   51   54 
LCS_GDT     D      66     D      66     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   42   46   49   51   54 
LCS_GDT     E      67     E      67     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   42   46   49   51   55 
LCS_GDT     M      68     M      68     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   42   46   49   52   56 
LCS_GDT     A      69     A      69     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   43   48   54   57   60 
LCS_GDT     Q      70     Q      70     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   44   49   55   58   60 
LCS_GDT     F      71     F      71     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   41   45   50   55   58   60 
LCS_GDT     Y      72     Y      72     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   39   43   50   53   55   60   61 
LCS_GDT     A      73     A      73     14   22   38     9   13   16   18   20   21   24   25   28   30   33   34   36   40   47   50   54   56   60   61 
LCS_GDT     V      74     V      74     14   22   38     7   13   16   18   20   21   24   25   28   30   33   34   39   46   50   54   59   61   63   64 
LCS_GDT     P      75     P      75     14   22   38     3    4    7   12   16   21   22   26   32   36   41   47   49   54   57   59   60   63   66   68 
LCS_GDT     V      76     V      76      7   22   38     3    6   12   17   20   21   24   26   32   40   43   52   53   57   58   61   63   65   69   72 
LCS_GDT     L      77     L      77      7   23   38     5   13   16   18   20   23   25   28   32   36   49   52   53   57   58   61   63   65   69   72 
LCS_GDT     P      78     P      78      7   23   38     5   13   16   18   21   25   27   28   37   43   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     E      79     E      79      9   23   38     5   11   14   18   21   25   27   28   32   43   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Q      80     Q      80     20   23   38     8   17   19   22   24   28   29   34   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L      81     L      81     20   23   38    10   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     V      82     V      82     20   23   38    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     D      83     D      83     20   23   38    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     R      84     R      84     20   23   38    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L      85     L      85     20   23   38    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     D      86     D      86     20   23   38    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Q      87     Q      87     20   23   33    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     S      88     S      88     20   23   31    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     W      89     W      89     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Q      90     Q      90     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Y      91     Y      91     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Y      92     Y      92     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Q      93     Q      93     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     D      94     D      94     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     R      95     R      95     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L      96     L      96     20   23   28     4   18   20   22   24   28   29   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     M      97     M      97     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     A      98     A      98     20   23   28    13   18   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     D      99     D      99     20   23   28     3    5   20   22   24   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     F     100     F     100      3   21   28     3    4    4    8   12   17   25   31   37   41   45   50   53   55   58   61   63   65   69   72 
LCS_GDT     S     101     S     101      3    3   28     3    4    4    4    7   12   14   17   25   31   37   42   48   53   56   60   63   65   69   72 
LCS_GDT     T     102     T     102      4    5   28     3    4    4    6    6    7    9   10   13   16   20   28   32   40   46   54   60   65   69   72 
LCS_GDT     E     103     E     103      4    5   28     3    4    4    6    6    8   11   12   14   20   22   28   39   43   49   56   60   65   69   72 
LCS_GDT     T     104     T     104      4    5   21     3    4    4    6    6    7    8    9   12   14   18   21   26   31   36   41   46   50   55   61 
LCS_GDT     T     105     T     105      4    5   21     3    4    4    6    6    7    8    9   12   14   18   21   26   32   36   41   46   50   55   61 
LCS_GDT     Y     106     Y     106      3    6   21     3    3    4    4    6    7   10   12   13   15   18   24   29   33   36   42   49   52   55   61 
LCS_GDT     W     107     W     107      5    6   21     4    4    5    6    7    7   10   12   13   15   18   24   28   33   36   41   49   52   56   61 
LCS_GDT     G     108     G     108      5    6   22     4    4    5    6    7    7   10   13   16   21   32   37   44   48   52   58   61   65   69   72 
LCS_GDT     V     109     V     109      5    6   29     4    4    5    6    7   11   14   21   30   34   38   42   48   53   56   59   63   65   69   72 
LCS_GDT     T     110     T     110      5    6   30     4    4    5   10   15   23   31   35   38   43   47   50   54   57   58   61   63   65   69   72 
LCS_GDT     D     111     D     111      5   19   30     3    4    5    8   16   25   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     S     112     S     112     17   19   30     6   14   16   17   18   22   27   29   39   44   49   52   54   57   58   61   63   64   66   68 
LCS_GDT     T     113     T     113     17   19   30    10   14   16   17   18   22   27   29   36   42   49   52   54   57   58   61   63   64   66   68 
LCS_GDT     T     114     T     114     17   19   30    10   14   16   17   18   24   28   34   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     G     115     G     115     17   19   30    10   14   16   17   21   26   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     W     116     W     116     17   19   30    10   14   16   17   18   22   27   33   39   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L     117     L     117     17   19   30    10   14   16   17   18   22   27   33   39   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L     118     L     118     17   19   30    10   14   16   17   21   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     E     119     E     119     17   19   30    10   14   16   17   18   22   28   34   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     A     120     A     120     17   19   30    10   14   16   21   25   29   30   33   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     A     121     A     121     17   19   30    10   14   16   21   25   29   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     V     122     V     122     17   19   30    10   14   16   17   21   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     H     123     H     123     17   19   30    10   14   16   17   18   22   28   33   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L     124     L     124     17   19   30    10   14   16   17   21   26   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Y     125     Y     125     17   19   30    10   14   16   17   21   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     H     126     H     126     17   19   30     6   14   16   17   18   19   20   26   33   43   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     H     127     H     127     17   19   30    11   14   16   17   18   19   27   31   37   43   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     R     128     R     128     17   19   30    11   13   16   17   21   28   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     S     129     S     129     13   19   30    11   13   13   13   13   16   27   34   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     Q     130     Q     130     13   19   30    11   13   16   18   21   28   30   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L     131     L     131     13   19   30    11   13   13   15   24   25   31   35   40   44   49   52   54   57   58   61   63   65   69   72 
LCS_GDT     L     132     L     132     13   16   30    11   13   13   13   19   25   31   35   39   43   47   50   54   57   58   61   63   65   69   72 
LCS_GDT     D     133     D     133     13   16   30    11   13   13   13   19   25   31   35   40   44   47   52   54   57   58   61   63   65   69   72 
LCS_GDT     Y     134     Y     134     13   16   30    11   13   13   22   24   25   31   35   38   43   47   50   54   57   58   61   63   65   69   72 
LCS_GDT     L     135     L     135     13   16   30    11   15   19   21   21   23   25   28   32   38   43   50   53   54   57   61   63   65   69   72 
LCS_GDT     N     136     N     136     13   16   30    11   13   13   13   14   18   22   25   32   38   43   50   53   54   57   61   63   65   69   72 
LCS_GDT     L     137     L     137     13   16   30    11   13   13   13   19   23   28   33   37   41   45   50   53   54   58   61   63   65   69   72 
LCS_GDT     L     138     L     138     13   16   30    11   13   17   18   21   22   24   25   30   34   40   43   48   53   56   60   63   65   69   72 
LCS_GDT     G     139     G     139     13   16   30     9   13   13   13   13   14   20   21   25   29   36   40   44   49   55   58   61   65   69   72 
LCS_GDT     Y     140     Y     140      3   15   30     3    4    4    6    8   12   15   21   25   29   35   39   44   49   55   58   61   65   69   72 
LCS_GDT     D     141     D     141      5    7   29     3    4    5    6    6    7   10   13   17   22   25   32   37   40   46   51   57   61   66   69 
LCS_GDT     I     142     I     142      5    7   29     4    4    5    6    6    7    8    9   16   18   21   23   25   27   33   39   41   48   54   60 
LCS_GDT     K     143     K     143      5    7   27     4    4    5    6    6    7    8    9    9   16   20   21   23   25   27   29   30   36   40   44 
LCS_GDT     L     144     L     144      5    7   14     4    4    5    6    6    7    8    9    9   10   12   12   12   15   19   20   21   27   28   33 
LCS_GDT     D     145     D     145      5    7   14     4    4    5    6    6    7    8    9    9   10   11   12   12   14   15   16   20   22   22   24 
LCS_GDT     L     146     L     146      3    7   14     3    3    3    4    5    7    8    9    9   10   11   12   12   14   14   16   17   18   19   19 
LCS_GDT     F     147     F     147      0    4   14     0    0    0    3    3    4    8    9    9   10   11   12   12   14   14   16   17   18   19   20 
LCS_AVERAGE  LCS_A:  15.27  (   9.51   13.54   22.75 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     22     25     26     28     29     31     35     40     44     49     52     54     57     58     61     63     65     69     72 
GDT PERCENT_CA   8.84  14.97  17.01  17.69  19.05  19.73  21.09  23.81  27.21  29.93  33.33  35.37  36.73  38.78  39.46  41.50  42.86  44.22  46.94  48.98
GDT RMS_LOCAL    0.26   0.69   0.83   0.91   1.27   1.47   2.49   2.71   2.97   3.21   3.52   3.72   3.92   4.13   4.29   4.63   4.79   5.26   5.87   6.20
GDT RMS_ALL_CA  21.74  27.18  27.06  27.14  27.24  27.74  21.74  21.71  21.88  21.94  22.08  22.03  21.88  21.90  21.87  21.75  21.73  21.61  21.57  21.55

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         29.204
LGA    T       2      T       2         27.837
LGA    D       3      D       3         24.568
LGA    W       4      W       4         23.125
LGA    Q       5      Q       5         19.533
LGA    Q       6      Q       6         15.462
LGA    A       7      A       7         13.377
LGA    L       8      L       8         10.591
LGA    D       9      D       9          8.407
LGA    R      10      R      10          3.688
LGA    H      11      H      11          5.739
LGA    V      12      V      12          1.859
LGA    G      13      G      13          6.259
LGA    V      14      V      14          9.483
LGA    G      15      G      15         11.325
LGA    V      16      V      16         13.390
LGA    R      17      R      17         17.598
LGA    T      18      T      18         20.958
LGA    T      19      T      19         22.093
LGA    R      20      R      20         25.746
LGA    D      21      D      21         29.618
LGA    L      22      L      22         31.975
LGA    I      23      I      23         33.597
LGA    R      24      R      24         37.955
LGA    L      25      L      25         41.643
LGA    I      26      I      26         43.505
LGA    Q      27      Q      27         48.700
LGA    P      28      P      28         48.611
LGA    E      29      E      29         53.143
LGA    D      30      D      30         50.256
LGA    W      31      W      31         44.300
LGA    D      32      D      32         43.579
LGA    K      33      K      33         41.136
LGA    R      34      R      34         36.837
LGA    P      35      P      35         34.626
LGA    I      36      I      36         30.502
LGA    S      37      S      37         30.406
LGA    G      38      G      38         28.676
LGA    K      39      K      39         24.040
LGA    R      40      R      40         18.934
LGA    S      41      S      41         19.915
LGA    V      42      V      42         18.933
LGA    Y      43      Y      43         16.185
LGA    E      44      E      44         11.222
LGA    V      45      V      45          9.550
LGA    A      46      A      46          7.366
LGA    V      47      V      47          6.233
LGA    H      48      H      48          1.314
LGA    L      49      L      49          4.460
LGA    A      50      A      50          5.136
LGA    V      51      V      51         10.570
LGA    L      52      L      52         12.635
LGA    L      53      L      53         16.279
LGA    E      54      E      54         19.764
LGA    A      55      A      55         21.093
LGA    D      56      D      56         26.254
LGA    L      57      L      57         30.508
LGA    R      58      R      58         29.285
LGA    I      59      I      59         30.627
LGA    A      60      A      60         32.740
LGA    T      61      T      61         36.526
LGA    G      62      G      62         36.832
LGA    A      63      A      63         34.328
LGA    T      64      T      64         36.858
LGA    A      65      A      65         35.590
LGA    D      66      D      66         34.972
LGA    E      67      E      67         31.634
LGA    M      68      M      68         28.462
LGA    A      69      A      69         28.665
LGA    Q      70      Q      70         27.048
LGA    F      71      F      71         22.736
LGA    Y      72      Y      72         21.088
LGA    A      73      A      73         22.700
LGA    V      74      V      74         19.055
LGA    P      75      P      75         13.201
LGA    V      76      V      76          9.596
LGA    L      77      L      77          9.969
LGA    P      78      P      78          8.438
LGA    E      79      E      79          8.398
LGA    Q      80      Q      80          4.982
LGA    L      81      L      81          2.479
LGA    V      82      V      82          2.824
LGA    D      83      D      83          3.034
LGA    R      84      R      84          1.767
LGA    L      85      L      85          0.803
LGA    D      86      D      86          1.618
LGA    Q      87      Q      87          1.307
LGA    S      88      S      88          1.538
LGA    W      89      W      89          1.807
LGA    Q      90      Q      90          0.917
LGA    Y      91      Y      91          1.867
LGA    Y      92      Y      92          2.644
LGA    Q      93      Q      93          2.041
LGA    D      94      D      94          1.430
LGA    R      95      R      95          3.307
LGA    L      96      L      96          3.993
LGA    M      97      M      97          2.368
LGA    A      98      A      98          2.898
LGA    D      99      D      99          2.445
LGA    F     100      F     100          6.094
LGA    S     101      S     101         11.748
LGA    T     102      T     102         14.872
LGA    E     103      E     103         16.150
LGA    T     104      T     104         21.954
LGA    T     105      T     105         21.934
LGA    Y     106      Y     106         21.602
LGA    W     107      W     107         21.395
LGA    G     108      G     108         14.968
LGA    V     109      V     109         10.766
LGA    T     110      T     110          3.920
LGA    D     111      D     111          3.164
LGA    S     112      S     112          7.849
LGA    T     113      T     113          8.544
LGA    T     114      T     114          5.805
LGA    G     115      G     115          3.926
LGA    W     116      W     116          6.839
LGA    L     117      L     117          6.284
LGA    L     118      L     118          2.430
LGA    E     119      E     119          4.758
LGA    A     120      A     120          5.802
LGA    A     121      A     121          2.729
LGA    V     122      V     122          2.812
LGA    H     123      H     123          5.693
LGA    L     124      L     124          3.530
LGA    Y     125      Y     125          2.974
LGA    H     126      H     126          7.093
LGA    H     127      H     127          6.946
LGA    R     128      R     128          3.297
LGA    S     129      S     129          5.161
LGA    Q     130      Q     130          4.284
LGA    L     131      L     131          2.845
LGA    L     132      L     132          3.623
LGA    D     133      D     133          2.743
LGA    Y     134      Y     134          3.836
LGA    L     135      L     135          7.367
LGA    N     136      N     136          7.992
LGA    L     137      L     137          6.224
LGA    L     138      L     138         10.611
LGA    G     139      G     139         13.802
LGA    Y     140      Y     140         14.567
LGA    D     141      D     141         19.965
LGA    I     142      I     142         24.177
LGA    K     143      K     143         31.157
LGA    L     144      L     144         34.270
LGA    D     145      D     145         39.782
LGA    L     146      L     146         41.314
LGA    F     147      F     147         43.269

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     35    2.71    24.490    22.078     1.245

LGA_LOCAL      RMSD =  2.710  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.712  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 21.064  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.467443 * X  +   0.774811 * Y  +  -0.425636 * Z  +   6.062079
  Y_new =  -0.745083 * X  +   0.086185 * Y  +  -0.661380 * Z  +   0.090919
  Z_new =  -0.475761 * X  +   0.626291 * Y  +   0.617585 * Z  +  -8.537178 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.792397   -2.349195  [ DEG:    45.4010   -134.5990 ]
  Theta =   0.495829    2.645764  [ DEG:    28.4089    151.5911 ]
  Phi   =  -1.010495    2.131098  [ DEG:   -57.8971    122.1029 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_1                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_1.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   35   2.71  22.078    21.06
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_1
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       7.340  -9.304   3.388  1.00  0.00              
ATOM      2  CA  THR     2      11.356  -8.749   4.511  1.00  0.00              
ATOM      3  CA  ASP     3      15.100  -7.835   2.834  1.00  0.00              
ATOM      4  CA  TRP     4      13.081  -7.530  -0.846  1.00  0.00              
ATOM      5  CA  GLN     5      10.801  -5.052   0.951  1.00  0.00              
ATOM      6  CA  GLN     6      13.338  -2.889   2.694  1.00  0.00              
ATOM      7  CA  ALA     7      15.267  -1.878  -0.420  1.00  0.00              
ATOM      8  CA  LEU     8      12.090  -0.863  -2.306  1.00  0.00              
ATOM      9  CA  ASP     9      10.730   1.262   0.562  1.00  0.00              
ATOM     10  CA  ARG    10      14.067   3.064   0.892  1.00  0.00              
ATOM     11  CA  HIS    11      14.161   3.811  -2.846  1.00  0.00              
ATOM     12  CA  VAL    12      10.632   5.214  -2.856  1.00  0.00              
ATOM     13  CA  GLY    13      11.471   7.456   0.124  1.00  0.00              
ATOM     14  CA  VAL    14      14.430   9.018  -1.708  1.00  0.00              
ATOM     15  CA  GLY    15      12.546   9.875  -4.933  1.00  0.00              
ATOM     16  CA  VAL    16       9.748  11.523  -2.881  1.00  0.00              
ATOM     17  CA  ARG    17      12.166  13.633  -0.798  1.00  0.00              
ATOM     18  CA  THR    18      14.014  14.905  -3.888  1.00  0.00              
ATOM     19  CA  THR    19      10.736  15.941  -5.542  1.00  0.00              
ATOM     20  CA  ARG    20       9.655  17.851  -2.416  1.00  0.00              
ATOM     21  CA  ASP    21      13.017  19.628  -2.263  1.00  0.00              
ATOM     22  CA  LEU    22      12.670  20.710  -5.891  1.00  0.00              
ATOM     23  CA  ILE    23       9.135  21.993  -5.145  1.00  0.00              
ATOM     24  CA  ARG    24      10.380  23.862  -2.133  1.00  0.00              
ATOM     25  CA  LEU    25      13.250  25.607  -4.066  1.00  0.00              
ATOM     26  CA  ILE    26      10.672  26.691  -6.722  1.00  0.00              
ATOM     27  CA  GLN    27       8.352  28.293  -4.258  1.00  0.00              
ATOM     28  CA  PRO    28       4.973  26.746  -4.695  1.00  0.00              
ATOM     29  CA  GLU    29       3.534  29.990  -5.954  1.00  0.00              
ATOM     30  CA  ASP    30       5.933  30.351  -8.928  1.00  0.00              
ATOM     31  CA  TRP    31       5.210  26.942 -10.277  1.00  0.00              
ATOM     32  CA  ASP    32       5.220  25.400 -13.693  1.00  0.00              
ATOM     33  CA  LYS    33       3.068  22.386 -14.304  1.00  0.00              
ATOM     34  CA  ARG    34       4.688  19.423 -15.950  1.00  0.00              
ATOM     35  CA  PRO    35       2.961  16.118 -16.461  1.00  0.00              
ATOM     36  CA  ILE    36       4.921  13.386 -14.575  1.00  0.00              
ATOM     37  CA  SER    37       5.415  10.598 -17.059  1.00  0.00              
ATOM     38  CA  GLY    38       8.784   9.267 -16.038  1.00  0.00              
ATOM     39  CA  LYS    39       7.987   8.900 -12.314  1.00  0.00              
ATOM     40  CA  ARG    40       4.818   7.110 -13.177  1.00  0.00              
ATOM     41  CA  SER    41       6.281   4.581 -15.557  1.00  0.00              
ATOM     42  CA  VAL    42       8.963   3.552 -13.052  1.00  0.00              
ATOM     43  CA  TYR    43       6.621   3.002 -10.102  1.00  0.00              
ATOM     44  CA  GLU    44       4.340   0.950 -12.297  1.00  0.00              
ATOM     45  CA  VAL    45       7.060  -1.250 -13.667  1.00  0.00              
ATOM     46  CA  ALA    46       8.419  -2.008 -10.251  1.00  0.00              
ATOM     47  CA  VAL    47       5.029  -2.882  -8.766  1.00  0.00              
ATOM     48  CA  HIS    48       4.119  -5.128 -11.692  1.00  0.00              
ATOM     49  CA  LEU    49       7.379  -7.006 -11.634  1.00  0.00              
ATOM     50  CA  ALA    50       7.215  -7.688  -7.856  1.00  0.00              
ATOM     51  CA  VAL    51       3.647  -9.006  -8.039  1.00  0.00              
ATOM     52  CA  LEU    52       4.283 -11.342 -11.021  1.00  0.00              
ATOM     53  CA  LEU    53       7.407 -12.742  -9.387  1.00  0.00              
ATOM     54  CA  GLU    54       6.286 -13.420  -5.833  1.00  0.00              
ATOM     55  CA  ALA    55       2.925 -14.746  -6.588  1.00  0.00              
ATOM     56  CA  ASP    56       3.236 -18.450  -5.702  1.00  0.00              
ATOM     57  CA  LEU    57       0.378 -19.885  -7.704  1.00  0.00              
ATOM     58  CA  ARG    58      -1.238 -18.532 -10.819  1.00  0.00              
ATOM     59  CA  ILE    59      -4.752 -19.623 -11.852  1.00  0.00              
ATOM     60  CA  ALA    60      -5.614 -18.708 -15.464  1.00  0.00              
ATOM     61  CA  THR    61      -9.224 -18.883 -16.558  1.00  0.00              
ATOM     62  CA  GLY    62      -8.940 -20.838 -19.862  1.00  0.00              
ATOM     63  CA  ALA    63      -5.797 -22.678 -18.983  1.00  0.00              
ATOM     64  CA  THR    64      -5.396 -26.497 -18.878  1.00  0.00              
ATOM     65  CA  ALA    65      -4.292 -27.779 -15.489  1.00  0.00              
ATOM     66  CA  ASP    66      -0.833 -28.789 -16.587  1.00  0.00              
ATOM     67  CA  GLU    67      -0.200 -25.463 -18.246  1.00  0.00              
ATOM     68  CA  MET    68      -1.343 -23.577 -15.126  1.00  0.00              
ATOM     69  CA  ALA    69       0.879 -25.630 -12.885  1.00  0.00              
ATOM     70  CA  GLN    70       3.867 -24.987 -15.177  1.00  0.00              
ATOM     71  CA  PHE    71       3.249 -21.226 -15.209  1.00  0.00              
ATOM     72  CA  TYR    72       2.964 -21.055 -11.424  1.00  0.00              
ATOM     73  CA  ALA    73       5.967 -23.331 -10.713  1.00  0.00              
ATOM     74  CA  VAL    74       8.509 -21.666 -12.945  1.00  0.00              
ATOM     75  CA  PRO    75       8.262 -18.079 -11.876  1.00  0.00              
ATOM     76  CA  VAL    76      11.640 -16.280 -11.582  1.00  0.00              
ATOM     77  CA  LEU    77      12.997 -15.579  -8.144  1.00  0.00              
ATOM     78  CA  PRO    78      12.519 -12.654  -5.867  1.00  0.00              
ATOM     79  CA  GLU    79      16.105 -11.592  -6.204  1.00  0.00              
ATOM     80  CA  GLN    80      15.963 -11.370  -9.981  1.00  0.00              
ATOM     81  CA  LEU    81      12.836  -9.280  -9.861  1.00  0.00              
ATOM     82  CA  VAL    82      14.387  -7.008  -7.300  1.00  0.00              
ATOM     83  CA  ASP    83      17.495  -6.460  -9.482  1.00  0.00              
ATOM     84  CA  ARG    84      15.357  -5.515 -12.496  1.00  0.00              
ATOM     85  CA  LEU    85      13.301  -3.001 -10.444  1.00  0.00              
ATOM     86  CA  ASP    86      16.419  -1.432  -9.039  1.00  0.00              
ATOM     87  CA  GLN    87      17.860  -0.782 -12.516  1.00  0.00              
ATOM     88  CA  SER    88      14.650   1.101 -13.429  1.00  0.00              
ATOM     89  CA  TRP    89      14.840   3.152 -10.215  1.00  0.00              
ATOM     90  CA  GLN    90      18.512   4.096 -10.810  1.00  0.00              
ATOM     91  CA  TYR    91      17.514   5.615 -14.148  1.00  0.00              
ATOM     92  CA  TYR    92      14.666   7.600 -12.576  1.00  0.00              
ATOM     93  CA  GLN    93      16.836   8.887  -9.730  1.00  0.00              
ATOM     94  CA  ASP    94      19.595  10.052 -12.005  1.00  0.00              
ATOM     95  CA  ARG    95      17.218  11.920 -14.329  1.00  0.00              
ATOM     96  CA  LEU    96      15.475  13.731 -11.421  1.00  0.00              
ATOM     97  CA  MET    97      18.850  14.737  -9.962  1.00  0.00              
ATOM     98  CA  ALA    98      20.021  15.996 -13.387  1.00  0.00              
ATOM     99  CA  ASP    99      16.942  18.105 -13.974  1.00  0.00              
ATOM    100  CA  PHE   100      17.215  19.669 -10.492  1.00  0.00              
ATOM    101  CA  SER   101      20.895  20.547 -11.013  1.00  0.00              
ATOM    102  CA  THR   102      21.114  21.906 -14.597  1.00  0.00              
ATOM    103  CA  GLU   103      18.300  24.420 -14.157  1.00  0.00              
ATOM    104  CA  THR   104      19.203  25.614 -10.623  1.00  0.00              
ATOM    105  CA  THR   105      15.809  24.889  -9.085  1.00  0.00              
ATOM    106  CA  TYR   106      13.554  23.487 -11.883  1.00  0.00              
ATOM    107  CA  TRP   107       9.937  23.491 -10.844  1.00  0.00              
ATOM    108  CA  GLY   108       7.570  21.934 -13.315  1.00  0.00              
ATOM    109  CA  VAL   109       5.569  19.549 -11.117  1.00  0.00              
ATOM    110  CA  THR   110       1.919  19.096 -11.903  1.00  0.00              
ATOM    111  CA  ASP   111       0.115  18.739  -8.536  1.00  0.00              
ATOM    112  CA  SER   112      -2.302  15.825  -9.047  1.00  0.00              
ATOM    113  CA  THR   113       0.294  13.741 -10.926  1.00  0.00              
ATOM    114  CA  THR   114       3.227  14.016  -8.511  1.00  0.00              
ATOM    115  CA  GLY   115       1.195  13.539  -5.321  1.00  0.00              
ATOM    116  CA  TRP   116      -0.664  10.480  -6.666  1.00  0.00              
ATOM    117  CA  LEU   117       2.531   8.749  -7.738  1.00  0.00              
ATOM    118  CA  LEU   118       4.098   9.394  -4.320  1.00  0.00              
ATOM    119  CA  GLU   119       1.015   8.035  -2.459  1.00  0.00              
ATOM    120  CA  ALA   120       0.879   4.894  -4.626  1.00  0.00              
ATOM    121  CA  ALA   121       4.609   4.173  -4.245  1.00  0.00              
ATOM    122  CA  VAL   122       4.434   4.612  -0.530  1.00  0.00              
ATOM    123  CA  HIS   123       1.417   2.229  -0.322  1.00  0.00              
ATOM    124  CA  LEU   124       3.078  -0.405  -2.465  1.00  0.00              
ATOM    125  CA  TYR   125       6.340  -0.363  -0.405  1.00  0.00              
ATOM    126  CA  HIS   126       4.557  -0.677   2.890  1.00  0.00              
ATOM    127  CA  HIS   127       1.942  -3.327   2.182  1.00  0.00              
ATOM    128  CA  ARG   128       3.949  -6.018   0.388  1.00  0.00              
ATOM    129  CA  SER   129       2.363  -8.949   2.252  1.00  0.00              
ATOM    130  CA  GLN   130      -1.124  -7.598   1.550  1.00  0.00              
ATOM    131  CA  LEU   131      -0.420  -7.272  -2.179  1.00  0.00              
ATOM    132  CA  LEU   132       0.999 -10.814  -2.449  1.00  0.00              
ATOM    133  CA  ASP   133      -1.989 -12.233  -0.596  1.00  0.00              
ATOM    134  CA  TYR   134      -4.425 -10.375  -2.917  1.00  0.00              
ATOM    135  CA  LEU   135      -2.560 -11.632  -5.926  1.00  0.00              
ATOM    136  CA  ASN   136      -2.593 -15.241  -4.622  1.00  0.00              
ATOM    137  CA  LEU   137      -6.318 -15.160  -4.174  1.00  0.00              
ATOM    138  CA  LEU   138      -7.014 -13.849  -7.660  1.00  0.00              
ATOM    139  CA  GLY   139      -4.594 -16.398  -9.249  1.00  0.00              
ATOM    140  CA  TYR   140      -6.104 -19.455  -7.507  1.00  0.00              
ATOM    141  CA  ASP   141      -9.583 -18.473  -8.547  1.00  0.00              
ATOM    142  CA  ILE   142      -9.730 -17.952 -12.272  1.00  0.00              
ATOM    143  CA  LYS   143     -13.086 -19.299 -13.261  1.00  0.00              
ATOM    144  CA  LEU   144     -12.618 -21.842 -16.014  1.00  0.00              
ATOM    145  CA  ASP   145     -14.998 -24.845 -15.901  1.00  0.00              
ATOM    146  CA  LEU   146     -15.501 -25.267 -20.053  1.00  0.00              
ATOM    147  CA  PHE   147     -17.203 -25.122 -16.217  1.00  0.00              
ATOM    148  CA  GLU   148     -17.484 -23.101 -12.543  1.00  0.00              
TER                                                                             
END
