
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS599_2
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_2.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41         1 - 41          4.78    25.25
  LCS_AVERAGE:     23.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28         1 - 28          1.83    25.97
  LONGEST_CONTINUOUS_SEGMENT:    28         2 - 29          1.96    26.09
  LCS_AVERAGE:     12.52

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          0.87    25.70
  LCS_AVERAGE:      9.68

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      0   28   41     0    0    1    4   21   26   27   29   32   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     T       2     T       2     25   28   41     5   10   22   25   25   26   28   30   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     D       3     D       3     25   28   41     5   20   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     W       4     W       4     25   28   41     5   10   22   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     Q       5     Q       5     25   28   41     6   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     Q       6     Q       6     25   28   41    10   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     A       7     A       7     25   28   41     9   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     L       8     L       8     25   28   41     6   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     D       9     D       9     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     R      10     R      10     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     H      11     H      11     25   28   41     7   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     V      12     V      12     25   28   41     7   22   23   25   25   26   28   31   33   34   35   37   39   41   41   43   46   50   57   59 
LCS_GDT     G      13     G      13     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   48   52 
LCS_GDT     V      14     V      14     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     G      15     G      15     25   28   41    11   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   48   52 
LCS_GDT     V      16     V      16     25   28   41    11   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   48   51 
LCS_GDT     R      17     R      17     25   28   41    11   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     T      18     T      18     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     T      19     T      19     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     R      20     R      20     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     D      21     D      21     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     L      22     L      22     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     I      23     I      23     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     R      24     R      24     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     L      25     L      25     25   28   41    11   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     I      26     I      26     25   28   41    12   22   23   25   25   26   28   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     Q      27     Q      27     22   28   41     4    4    4    4   23   26   27   31   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     P      28     P      28      4   28   41     4    4    4    5    9   21   28   31   33   34   35   37   39   41   41   42   43   45   45   49 
LCS_GDT     E      29     E      29      4   28   41     4    4    4    4    6   17   23   31   33   34   35   37   39   41   41   42   42   45   45   49 
LCS_GDT     D      30     D      30      4   26   41     4    4    4   10   16   23   26   31   33   34   35   37   39   41   41   42   43   45   45   49 
LCS_GDT     W      31     W      31      4    7   41     3    3    4    4   14   22   27   31   33   34   35   37   39   41   41   42   43   45   45   49 
LCS_GDT     D      32     D      32      5    7   41     4    4    5    5    9   23   28   31   33   34   35   37   39   41   41   42   43   45   45   51 
LCS_GDT     K      33     K      33      5    7   41     4    4    5    5    6    8   20   30   33   34   35   37   39   41   41   42   43   45   47   51 
LCS_GDT     R      34     R      34      5    7   41     4    4    5    5   17   26   28   31   33   34   35   37   38   41   41   42   43   45   47   51 
LCS_GDT     P      35     P      35      5    7   41     4    4    5    5    6    8   12   21   31   34   34   35   35   39   39   42   43   45   47   51 
LCS_GDT     I      36     I      36      5    7   41     3    4    5    5    6    8    9   12   16   24   30   35   35   39   39   41   42   43   44   48 
LCS_GDT     S      37     S      37      4    7   41     3    4    4    5    9   11   15   17   18   19   22   25   35   39   39   41   42   43   45   48 
LCS_GDT     G      38     G      38      4    5   41     3    4    4    5    6    7    8   12   17   19   22   25   34   39   39   41   42   43   47   51 
LCS_GDT     K      39     K      39      4    5   41     3    4    4    5    6    7    8   12   13   16   22   27   35   39   39   41   42   43   47   51 
LCS_GDT     R      40     R      40      3   14   41     1    3    3    5    7   11   15   17   18   29   31   32   34   39   39   41   42   45   47   51 
LCS_GDT     S      41     S      41     13   14   41    10   12   12   13   14   15   15   17   18   20   22   25   29   30   33   35   39   44   47   51 
LCS_GDT     V      42     V      42     13   14   24    10   12   12   13   14   15   15   17   18   20   22   25   29   30   31   34   39   44   47   51 
LCS_GDT     Y      43     Y      43     13   14   24    10   12   12   13   14   15   15   17   18   20   22   25   29   30   31   33   39   43   47   51 
LCS_GDT     E      44     E      44     13   14   24    10   12   12   13   14   15   15   17   18   20   22   25   29   30   31   34   39   44   47   51 
LCS_GDT     V      45     V      45     13   14   24    10   12   12   13   14   15   15   17   18   20   22   27   29   31   32   36   43   48   50   54 
LCS_GDT     A      46     A      46     13   14   24    10   12   12   13   14   15   15   17   18   20   22   27   29   31   34   39   45   51   54   58 
LCS_GDT     V      47     V      47     13   14   24    10   12   12   13   14   15   15   17   18   20   23   27   29   31   33   41   47   50   54   58 
LCS_GDT     H      48     H      48     13   14   24    10   12   12   13   14   15   15   17   18   20   24   30   38   42   44   50   53   55   58   60 
LCS_GDT     L      49     L      49     13   14   24    10   12   12   13   14   15   16   32   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     A      50     A      50     13   14   25    10   12   12   13   14   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     V      51     V      51     13   14   26     7   12   12   13   14   15   15   17   18   20   33   40   46   49   53   54   57   59   61   62 
LCS_GDT     L      52     L      52     13   14   33     4   12   12   13   14   15   15   17   18   20   22   25   32   41   49   54   56   57   60   62 
LCS_GDT     L      53     L      53     13   14   34     4    4   10   13   14   15   16   21   22   23   26   27   29   36   43   52   53   58   61   62 
LCS_GDT     E      54     E      54      4   14   34     4    4    5   13   14   15   15   17   18   20   22   27   29   30   32   39   51   56   57   60 
LCS_GDT     A      55     A      55      4    5   34     3    3    4    4    5    7   10   13   17   18   26   27   28   31   39   44   51   56   57   59 
LCS_GDT     D      56     D      56      4    4   34     3    3    4    4    5    6    8   10   13   17   21   27   28   30   31   34   39   41   49   54 
LCS_GDT     L      57     L      57      4    4   34     3    3    4    4    5    7    9   13   16   18   22   27   28   30   31   34   39   41   45   50 
LCS_GDT     R      58     R      58      4   17   34     0    3    4    4    8   17   18   19   22   23   26   27   28   30   34   39   42   46   49   52 
LCS_GDT     I      59     I      59      3   18   34     3    3    6   13   16   17   19   21   22   23   26   27   28   30   36   41   46   46   49   52 
LCS_GDT     A      60     A      60      3   18   34     3    3    3    5   16   17   19   21   22   23   26   27   28   30   35   39   42   46   49   51 
LCS_GDT     T      61     T      61     14   18   34     3    5    5   14   14   16   18   20   21   23   24   27   28   30   31   35   39   42   45   48 
LCS_GDT     G      62     G      62     14   18   34     8   13   14   14   16   17   19   21   22   23   26   27   28   30   36   41   46   46   49   52 
LCS_GDT     A      63     A      63     14   18   34     8   13   14   14   16   17   19   21   22   23   26   27   29   33   39   44   46   48   53   55 
LCS_GDT     T      64     T      64     14   18   34     9   13   14   14   16   17   19   22   23   27   29   30   33   39   42   47   51   54   57   59 
LCS_GDT     A      65     A      65     14   18   34     9   13   14   14   16   17   20   22   26   28   29   33   37   40   43   47   51   54   57   59 
LCS_GDT     D      66     D      66     14   18   34     9   13   14   14   16   17   20   24   26   31   35   41   45   47   49   53   54   56   58   60 
LCS_GDT     E      67     E      67     14   18   34     9   13   14   14   16   17   20   22   26   28   31   39   42   45   49   52   54   56   58   60 
LCS_GDT     M      68     M      68     14   18   34     9   13   14   14   16   17   20   22   25   28   29   33   37   42   45   49   52   56   57   59 
LCS_GDT     A      69     A      69     14   18   34     9   13   14   14   16   17   20   24   26   30   35   40   44   47   49   53   54   57   58   60 
LCS_GDT     Q      70     Q      70     14   18   34     9   13   14   14   16   17   20   24   29   36   41   47   48   52   54   54   56   57   61   62 
LCS_GDT     F      71     F      71     14   18   34     8   13   14   14   16   17   20   24   26   30   35   41   45   47   49   54   56   57   58   62 
LCS_GDT     Y      72     Y      72     14   18   34     9   13   14   14   16   17   20   22   26   28   31   39   42   47   49   53   54   57   58   61 
LCS_GDT     A      73     A      73     14   18   34     9   13   14   14   16   17   20   24   27   33   41   47   52   53   54   54   57   59   61   62 
LCS_GDT     V      74     V      74     14   18   34     6   13   14   14   16   17   23   30   39   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     P      75     P      75     14   19   34     5    8    9   14   16   18   25   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     V      76     V      76      9   24   34     6    8   12   14   19   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L      77     L      77      9   24   34     6    8    9   16   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     P      78     P      78      9   24   34     6    8    9   18   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     E      79     E      79     21   24   34     6    8   11   16   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Q      80     Q      80     21   24   34    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L      81     L      81     21   24   34    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     V      82     V      82     21   24   34    14   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     D      83     D      83     21   24   34    14   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     R      84     R      84     21   24   34    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L      85     L      85     21   24   34    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     D      86     D      86     21   24   34    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Q      87     Q      87     21   24   31    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     S      88     S      88     21   24   31    15   19   20   21   22   24   28   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     W      89     W      89     21   24   31    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Q      90     Q      90     21   24   31    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Y      91     Y      91     21   24   31    15   19   20   21   22   24   28   34   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Y      92     Y      92     21   24   31    15   19   20   21   22   24   27   34   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Q      93     Q      93     21   24   31    15   19   20   21   22   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     D      94     D      94     21   24   31    15   19   20   21   22   24   28   34   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     R      95     R      95     21   24   31    15   19   20   21   22   24   26   33   37   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L      96     L      96     21   24   31    10   19   20   21   22   24   26   33   37   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     M      97     M      97     21   24   31    15   19   20   21   22   24   28   34   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     A      98     A      98     21   24   31    12   19   20   21   22   24   26   33   35   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     D      99     D      99     21   24   31     3    6   20   21   22   24   26   33   36   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     F     100     F     100      3   22   31     3    3    4    7   11   17   19   25   29   34   39   45   48   50   52   56   57   59   61   62 
LCS_GDT     S     101     S     101      3    3   30     1    3    3    4    4    7   10   15   19   22   29   36   44   49   50   52   54   57   60   60 
LCS_GDT     T     102     T     102      4    5   30     0    4    4    4    5    8    8    9   12   16   19   25   28   31   32   38   47   52   57   58 
LCS_GDT     E     103     E     103      4    5   29     3    4    4    4    5    8    8    9   12   16   19   25   27   31   34   43   48   53   57   58 
LCS_GDT     T     104     T     104      4    5   18     3    4    4    4    5    8    8    9   11   13   16   19   21   24   30   32   35   36   39   41 
LCS_GDT     T     105     T     105      4    5   25     3    4    4    4    5    8    8    9   11   12   16   19   21   24   30   32   35   36   39   41 
LCS_GDT     Y     106     Y     106      3    8   25     3    3    4    4    6    8    8    8   10   14   20   21   24   26   29   32   34   37   38   41 
LCS_GDT     W     107     W     107      6    8   27     4    5    6    7    7    8    8   10   13   20   22   22   24   28   30   32   35   36   38   39 
LCS_GDT     G     108     G     108      6    8   27     4    5    6    7    7    8   12   16   19   20   22   25   29   31   32   34   37   40   45   49 
LCS_GDT     V     109     V     109      6    8   30     4    5    6    7    8   10   13   16   19   22   25   36   39   43   47   51   54   55   57   58 
LCS_GDT     T     110     T     110      6    8   33     4    5    6    7   10   15   19   22   26   31   38   44   47   49   52   55   57   59   61   62 
LCS_GDT     D     111     D     111      6   19   33     3    5    6    7   14   22   26   33   37   45   49   52   52   53   54   56   57   59   61   62 
LCS_GDT     S     112     S     112     17   20   33     8   15   17   17   20   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     T     113     T     113     17   20   33     8   16   17   17   17   26   31   36   41   44   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     T     114     T     114     17   20   33    13   16   17   17   17   23   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     G     115     G     115     17   20   33    13   16   17   17   20   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     W     116     W     116     17   20   33    13   16   17   17   17   26   31   36   41   44   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L     117     L     117     17   20   33    13   16   17   17   17   18   31   36   41   44   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L     118     L     118     17   20   33    13   16   17   17   20   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     E     119     E     119     17   20   33    13   16   17   17   19   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     A     120     A     120     17   20   33    13   16   17   17   17   18   21   36   38   44   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     A     121     A     121     17   20   33    13   16   17   17   17   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     V     122     V     122     17   20   33    13   16   17   17   20   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     H     123     H     123     17   20   33    13   16   17   17   17   18   27   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L     124     L     124     17   20   33    13   16   17   17   17   18   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Y     125     Y     125     17   20   33    13   16   17   17   20   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     H     126     H     126     17   20   33    10   16   17   17   17   24   28   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     H     127     H     127     17   20   33    13   16   17   17   17   18   21   21   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     R     128     R     128     17   20   33    13   16   17   17   20   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     S     129     S     129     13   20   33    11   13   13   13   13   18   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Q     130     Q     130     13   20   33    11   13   13   13   20   26   31   36   41   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L     131     L     131     13   20   33    11   13   13   13   22   24   28   34   37   45   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     L     132     L     132     13   19   33    11   13   13   13   17   22   26   33   37   42   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     D     133     D     133     13   15   33    11   13   13   13   14   19   28   34   37   42   50   52   52   53   54   56   57   59   61   62 
LCS_GDT     Y     134     Y     134     13   15   33    11   13   13   16   19   22   26   32   37   42   49   52   52   53   54   56   57   59   61   62 
LCS_GDT     L     135     L     135     13   15   33    11   13   14   16   22   23   24   29   32   37   42   46   48   53   54   56   57   59   61   62 
LCS_GDT     N     136     N     136     13   15   33    11   13   13   13   13   15   24   27   32   36   40   46   48   50   52   56   57   59   61   62 
LCS_GDT     L     137     L     137     13   15   33    11   13   13   14   16   20   24   29   32   37   42   46   48   53   54   56   57   59   61   62 
LCS_GDT     L     138     L     138     13   15   33    11   13   13   21   22   23   24   29   31   34   38   43   47   50   52   55   57   59   61   62 
LCS_GDT     G     139     G     139     13   15   33    10   13   13   13   13   15   17   18   24   27   31   35   41   45   47   54   55   56   60   60 
LCS_GDT     Y     140     Y     140      3   15   33     3    3    5   10   12   15   17   21   25   30   31   36   41   46   49   54   57   59   61   62 
LCS_GDT     D     141     D     141      4    7   33     3    3    5    6    6   10   14   16   19   23   24   28   33   39   42   45   48   53   58   60 
LCS_GDT     I     142     I     142      4    7   33     4    4    5    6    6    7    8   10   16   20   23   27   29   30   33   36   39   44   48   51 
LCS_GDT     K     143     K     143      4    7   32     4    4    5    6    6    7    8   10   10   12   22   25   26   28   30   33   35   36   38   39 
LCS_GDT     L     144     L     144      4    7   15     4    4    5    6    6    7    8   10   10   12   13   14   14   21   29   33   35   36   36   38 
LCS_GDT     D     145     D     145      4    7   15     4    4    5    6    6    7    8   10   10   12   13   14   14   14   15   16   17   18   18   19 
LCS_GDT     L     146     L     146      3    5   15     3    3    3    4    6    7    8   10   10   12   13   14   14   14   14   16   17   18   18   19 
LCS_GDT     F     147     F     147      3    3   15     3    3    3    3    3    4    4    8   10   12   13   14   14   14   15   16   17   18   18   19 
LCS_AVERAGE  LCS_A:  15.07  (   9.68   12.52   23.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     22     23     25     25     26     31     36     41     45     50     52     52     53     54     56     57     59     61     62 
GDT PERCENT_CA  10.20  14.97  15.65  17.01  17.01  17.69  21.09  24.49  27.89  30.61  34.01  35.37  35.37  36.05  36.73  38.10  38.78  40.14  41.50  42.18
GDT RMS_LOCAL    0.35   0.61   0.69   0.87   0.87   1.42   2.47   2.75   3.10   3.46   3.73   3.82   3.82   4.03   4.10   4.34   4.50   4.82   5.22   5.38
GDT RMS_ALL_CA  22.97  25.77  25.69  25.70  25.70  25.65  22.82  22.85  22.78  22.63  22.68  22.65  22.65  22.62  22.63  22.62  22.61  22.67  22.72  22.76

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         34.258
LGA    T       2      T       2         34.965
LGA    D       3      D       3         35.219
LGA    W       4      W       4         29.813
LGA    Q       5      Q       5         25.685
LGA    Q       6      Q       6         27.328
LGA    A       7      A       7         25.022
LGA    L       8      L       8         18.620
LGA    D       9      D       9         18.662
LGA    R      10      R      10         22.483
LGA    H      11      H      11         18.168
LGA    V      12      V      12         13.927
LGA    G      13      G      13         18.090
LGA    V      14      V      14         21.446
LGA    G      15      G      15         16.931
LGA    V      16      V      16         17.488
LGA    R      17      R      17         24.132
LGA    T      18      T      18         26.540
LGA    T      19      T      19         24.402
LGA    R      20      R      20         27.683
LGA    D      21      D      21         33.676
LGA    L      22      L      22         33.775
LGA    I      23      I      23         34.293
LGA    R      24      R      24         39.243
LGA    L      25      L      25         43.518
LGA    I      26      I      26         43.857
LGA    Q      27      Q      27         48.924
LGA    P      28      P      28         52.954
LGA    E      29      E      29         56.608
LGA    D      30      D      30         53.748
LGA    W      31      W      31         49.086
LGA    D      32      D      32         48.599
LGA    K      33      K      33         45.838
LGA    R      34      R      34         43.014
LGA    P      35      P      35         38.876
LGA    I      36      I      36         37.655
LGA    S      37      S      37         38.433
LGA    G      38      G      38         34.763
LGA    K      39      K      39         30.653
LGA    R      40      R      40         28.634
LGA    S      41      S      41         27.235
LGA    V      42      V      42         22.986
LGA    Y      43      Y      43         21.825
LGA    E      44      E      44         20.620
LGA    V      45      V      45         15.181
LGA    A      46      A      46         11.991
LGA    V      47      V      47         11.423
LGA    H      48      H      48         11.213
LGA    L      49      L      49          4.611
LGA    A      50      A      50          3.115
LGA    V      51      V      51          8.961
LGA    L      52      L      52         11.054
LGA    L      53      L      53         11.733
LGA    E      54      E      54         14.020
LGA    A      55      A      55         15.336
LGA    D      56      D      56         17.563
LGA    L      57      L      57         21.190
LGA    R      58      R      58         20.886
LGA    I      59      I      59         22.215
LGA    A      60      A      60         25.018
LGA    T      61      T      61         30.078
LGA    G      62      G      62         26.333
LGA    A      63      A      63         21.316
LGA    T      64      T      64         18.672
LGA    A      65      A      65         16.935
LGA    D      66      D      66         12.231
LGA    E      67      E      67         13.395
LGA    M      68      M      68         14.877
LGA    A      69      A      69         11.752
LGA    Q      70      Q      70          8.252
LGA    F      71      F      71         10.353
LGA    Y      72      Y      72         11.041
LGA    A      73      A      73          7.826
LGA    V      74      V      74          4.879
LGA    P      75      P      75          3.918
LGA    V      76      V      76          2.251
LGA    L      77      L      77          1.369
LGA    P      78      P      78          2.263
LGA    E      79      E      79          2.953
LGA    Q      80      Q      80          0.705
LGA    L      81      L      81          2.869
LGA    V      82      V      82          2.268
LGA    D      83      D      83          0.319
LGA    R      84      R      84          2.301
LGA    L      85      L      85          2.521
LGA    D      86      D      86          0.297
LGA    Q      87      Q      87          2.735
LGA    S      88      S      88          3.957
LGA    W      89      W      89          2.253
LGA    Q      90      Q      90          2.544
LGA    Y      91      Y      91          5.211
LGA    Y      92      Y      92          4.905
LGA    Q      93      Q      93          2.808
LGA    D      94      D      94          5.701
LGA    R      95      R      95          7.629
LGA    L      96      L      96          5.956
LGA    M      97      M      97          5.649
LGA    A      98      A      98          8.836
LGA    D      99      D      99          9.205
LGA    F     100      F     100         13.105
LGA    S     101      S     101         20.162
LGA    T     102      T     102         23.225
LGA    E     103      E     103         25.399
LGA    T     104      T     104         31.198
LGA    T     105      T     105         30.900
LGA    Y     106      Y     106         31.482
LGA    W     107      W     107         30.804
LGA    G     108      G     108         25.907
LGA    V     109      V     109         20.673
LGA    T     110      T     110         14.304
LGA    D     111      D     111          8.298
LGA    S     112      S     112          1.224
LGA    T     113      T     113          2.469
LGA    T     114      T     114          3.104
LGA    G     115      G     115          2.436
LGA    W     116      W     116          2.615
LGA    L     117      L     117          3.298
LGA    L     118      L     118          2.087
LGA    E     119      E     119          2.901
LGA    A     120      A     120          3.973
LGA    A     121      A     121          2.925
LGA    V     122      V     122          1.941
LGA    H     123      H     123          3.928
LGA    L     124      L     124          3.724
LGA    Y     125      Y     125          1.730
LGA    H     126      H     126          3.921
LGA    H     127      H     127          4.582
LGA    R     128      R     128          2.669
LGA    S     129      S     129          3.612
LGA    Q     130      Q     130          3.002
LGA    L     131      L     131          5.870
LGA    L     132      L     132          7.177
LGA    D     133      D     133          6.979
LGA    Y     134      Y     134          8.734
LGA    L     135      L     135         11.918
LGA    N     136      N     136         12.916
LGA    L     137      L     137         12.485
LGA    L     138      L     138         16.140
LGA    G     139      G     139         19.040
LGA    Y     140      Y     140         18.912
LGA    D     141      D     141         24.795
LGA    I     142      I     142         28.027
LGA    K     143      K     143         34.906
LGA    L     144      L     144         36.398
LGA    D     145      D     145         42.231
LGA    L     146      L     146         41.545
LGA    F     147      F     147         41.037

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     36    2.75    23.639    21.194     1.263

LGA_LOCAL      RMSD =  2.750  Number of atoms =   36  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.833  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 21.895  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.643536 * X  +   0.605597 * Y  +   0.468095 * Z  +   8.641832
  Y_new =  -0.104824 * X  +  -0.536064 * Y  +   0.837644 * Z  +   3.077532
  Z_new =   0.758204 * X  +  -0.588122 * Y  +  -0.281495 * Z  + -11.532781 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.017205    1.124387  [ DEG:  -115.5774     64.4226 ]
  Theta =  -0.860554   -2.281039  [ DEG:   -49.3061   -130.6939 ]
  Phi   =  -0.161470    2.980123  [ DEG:    -9.2515    170.7485 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_2                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_2.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   36   2.75  21.194    21.90
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_2
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      11.095  -8.004 -23.833  1.00  0.00              
ATOM      2  CA  THR     2      12.727  -5.270 -25.504  1.00  0.00              
ATOM      3  CA  ASP     3       8.839  -4.763 -23.950  1.00  0.00              
ATOM      4  CA  TRP     4       9.793  -5.338 -20.210  1.00  0.00              
ATOM      5  CA  GLN     5      12.900  -3.122 -20.716  1.00  0.00              
ATOM      6  CA  GLN     6      11.347  -0.122 -22.364  1.00  0.00              
ATOM      7  CA  ALA     7       8.832   0.614 -19.617  1.00  0.00              
ATOM      8  CA  LEU     8      11.571   0.691 -17.001  1.00  0.00              
ATOM      9  CA  ASP     9      13.816   2.966 -19.073  1.00  0.00              
ATOM     10  CA  ARG    10      10.933   5.414 -19.703  1.00  0.00              
ATOM     11  CA  HIS    11      10.105   5.570 -15.979  1.00  0.00              
ATOM     12  CA  VAL    12      13.792   6.220 -15.143  1.00  0.00              
ATOM     13  CA  GLY    13      13.994   8.962 -17.780  1.00  0.00              
ATOM     14  CA  VAL    14      10.866  10.907 -16.704  1.00  0.00              
ATOM     15  CA  GLY    15      11.544  11.133 -12.946  1.00  0.00              
ATOM     16  CA  VAL    16      15.162  12.121 -13.682  1.00  0.00              
ATOM     17  CA  ARG    17      14.487  14.900 -16.226  1.00  0.00              
ATOM     18  CA  THR    18      11.920  16.653 -14.027  1.00  0.00              
ATOM     19  CA  THR    19      14.424  16.478 -11.124  1.00  0.00              
ATOM     20  CA  ARG    20      17.172  18.084 -13.290  1.00  0.00              
ATOM     21  CA  ASP    21      14.769  20.857 -14.327  1.00  0.00              
ATOM     22  CA  LEU    22      13.909  21.401 -10.606  1.00  0.00              
ATOM     23  CA  ILE    23      17.610  21.490  -9.676  1.00  0.00              
ATOM     24  CA  ARG    24      18.385  23.940 -12.395  1.00  0.00              
ATOM     25  CA  LEU    25      15.524  26.271 -11.299  1.00  0.00              
ATOM     26  CA  ILE    26      16.566  26.199  -7.635  1.00  0.00              
ATOM     27  CA  GLN    27      20.293  26.809  -8.465  1.00  0.00              
ATOM     28  CA  PRO    28      20.168  29.801 -10.805  1.00  0.00              
ATOM     29  CA  GLU    29      18.025  31.783  -8.309  1.00  0.00              
ATOM     30  CA  ASP    30      20.457  30.870  -5.569  1.00  0.00              
ATOM     31  CA  TRP    31      18.108  28.930  -3.315  1.00  0.00              
ATOM     32  CA  ASP    32      19.206  25.589  -1.926  1.00  0.00              
ATOM     33  CA  LYS    33      16.327  23.144  -1.194  1.00  0.00              
ATOM     34  CA  ARG    34      16.852  20.430   1.334  1.00  0.00              
ATOM     35  CA  PRO    35      14.860  17.139   1.258  1.00  0.00              
ATOM     36  CA  ILE    36      17.412  14.315   0.962  1.00  0.00              
ATOM     37  CA  SER    37      16.152  11.503   3.226  1.00  0.00              
ATOM     38  CA  GLY    38      12.598  11.524   1.817  1.00  0.00              
ATOM     39  CA  LYS    39      13.932  10.930  -1.710  1.00  0.00              
ATOM     40  CA  ARG    40      15.995   7.945  -0.513  1.00  0.00              
ATOM     41  CA  SER    41      13.065   6.295   1.301  1.00  0.00              
ATOM     42  CA  VAL    42      10.808   6.650  -1.756  1.00  0.00              
ATOM     43  CA  TYR    43      13.363   5.104  -4.125  1.00  0.00              
ATOM     44  CA  GLU    44      13.831   2.106  -1.783  1.00  0.00              
ATOM     45  CA  VAL    45      10.082   1.548  -1.438  1.00  0.00              
ATOM     46  CA  ALA    46       9.615   1.682  -5.246  1.00  0.00              
ATOM     47  CA  VAL    47      12.138  -1.102  -5.827  1.00  0.00              
ATOM     48  CA  HIS    48      10.237  -3.182  -3.246  1.00  0.00              
ATOM     49  CA  LEU    49       6.765  -2.550  -4.795  1.00  0.00              
ATOM     50  CA  ALA    50       8.132  -3.548  -8.243  1.00  0.00              
ATOM     51  CA  VAL    51       9.075  -6.846  -6.562  1.00  0.00              
ATOM     52  CA  LEU    52       5.619  -7.383  -4.985  1.00  0.00              
ATOM     53  CA  LEU    53       4.053  -7.003  -8.438  1.00  0.00              
ATOM     54  CA  GLU    54       6.512  -8.986 -10.570  1.00  0.00              
ATOM     55  CA  ALA    55       3.866 -10.883 -12.534  1.00  0.00              
ATOM     56  CA  ASP    56       5.024 -10.900 -16.122  1.00  0.00              
ATOM     57  CA  LEU    57       1.731 -10.987 -17.900  1.00  0.00              
ATOM     58  CA  ARG    58      -1.737 -10.132 -16.730  1.00  0.00              
ATOM     59  CA  ILE    59      -4.806 -11.247 -18.758  1.00  0.00              
ATOM     60  CA  ALA    60      -7.834  -9.037 -18.108  1.00  0.00              
ATOM     61  CA  THR    61     -11.065 -10.070 -19.716  1.00  0.00              
ATOM     62  CA  GLY    62     -11.915  -6.916 -21.711  1.00  0.00              
ATOM     63  CA  ALA    63      -8.515  -6.666 -23.305  1.00  0.00              
ATOM     64  CA  THR    64      -8.146  -6.277 -27.045  1.00  0.00              
ATOM     65  CA  ALA    65      -6.420  -8.897 -29.114  1.00  0.00              
ATOM     66  CA  ASP    66      -3.478  -6.590 -29.838  1.00  0.00              
ATOM     67  CA  GLU    67      -2.876  -6.054 -26.108  1.00  0.00              
ATOM     68  CA  MET    68      -2.930  -9.735 -25.417  1.00  0.00              
ATOM     69  CA  ALA    69      -0.461 -10.423 -28.257  1.00  0.00              
ATOM     70  CA  GLN    70       1.919  -7.777 -27.008  1.00  0.00              
ATOM     71  CA  PHE    71       1.883  -9.085 -23.400  1.00  0.00              
ATOM     72  CA  TYR    72       2.580 -12.567 -24.649  1.00  0.00              
ATOM     73  CA  ALA    73       5.251 -11.847 -27.190  1.00  0.00              
ATOM     74  CA  VAL    74       7.651 -10.200 -24.686  1.00  0.00              
ATOM     75  CA  PRO    75       7.375 -12.816 -21.878  1.00  0.00              
ATOM     76  CA  VAL    76       9.338 -11.405 -18.983  1.00  0.00              
ATOM     77  CA  LEU    77      10.215 -13.747 -16.168  1.00  0.00              
ATOM     78  CA  PRO    78       9.905 -12.369 -12.665  1.00  0.00              
ATOM     79  CA  GLU    79      13.583 -12.408 -11.910  1.00  0.00              
ATOM     80  CA  GLN    80      14.539 -10.632 -15.186  1.00  0.00              
ATOM     81  CA  LEU    81      12.036  -7.899 -14.546  1.00  0.00              
ATOM     82  CA  VAL    82      13.281  -7.394 -10.991  1.00  0.00              
ATOM     83  CA  ASP    83      16.835  -7.136 -12.131  1.00  0.00              
ATOM     84  CA  ARG    84      15.948  -4.534 -14.833  1.00  0.00              
ATOM     85  CA  LEU    85      13.990  -2.501 -12.323  1.00  0.00              
ATOM     86  CA  ASP    86      16.829  -2.475  -9.801  1.00  0.00              
ATOM     87  CA  GLN    87      19.358  -1.443 -12.398  1.00  0.00              
ATOM     88  CA  SER    88      17.279   1.420 -13.648  1.00  0.00              
ATOM     89  CA  TRP    89      16.501   2.955 -10.273  1.00  0.00              
ATOM     90  CA  GLN    90      20.187   2.678  -9.274  1.00  0.00              
ATOM     91  CA  TYR    91      21.138   4.583 -12.441  1.00  0.00              
ATOM     92  CA  TYR    92      18.723   7.368 -11.513  1.00  0.00              
ATOM     93  CA  GLN    93      20.002   7.609  -7.945  1.00  0.00              
ATOM     94  CA  ASP    94      23.641   7.789  -9.081  1.00  0.00              
ATOM     95  CA  ARG    95      22.953  10.482 -11.675  1.00  0.00              
ATOM     96  CA  LEU    96      20.994  12.559  -9.230  1.00  0.00              
ATOM     97  CA  MET    97      23.791  12.234  -6.653  1.00  0.00              
ATOM     98  CA  ALA    98      26.494  13.260  -9.131  1.00  0.00              
ATOM     99  CA  ASP    99      24.595  16.358 -10.295  1.00  0.00              
ATOM    100  CA  PHE   100      24.006  17.447  -6.657  1.00  0.00              
ATOM    101  CA  SER   101      27.649  17.014  -5.691  1.00  0.00              
ATOM    102  CA  THR   102      29.031  19.025  -8.670  1.00  0.00              
ATOM    103  CA  GLU   103      26.799  21.907  -7.511  1.00  0.00              
ATOM    104  CA  THR   104      27.645  22.129  -3.797  1.00  0.00              
ATOM    105  CA  THR   105      24.271  22.694  -2.283  1.00  0.00              
ATOM    106  CA  TYR   106      22.338  19.465  -3.102  1.00  0.00              
ATOM    107  CA  TRP   107      18.770  20.064  -2.562  1.00  0.00              
ATOM    108  CA  GLY   108      15.842  17.749  -2.740  1.00  0.00              
ATOM    109  CA  VAL   109      12.974  20.221  -3.340  1.00  0.00              
ATOM    110  CA  THR   110       9.672  18.998  -4.539  1.00  0.00              
ATOM    111  CA  ASP   111       8.517  20.524  -7.860  1.00  0.00              
ATOM    112  CA  SER   112       5.091  19.309  -8.931  1.00  0.00              
ATOM    113  CA  THR   113       6.074  16.642 -11.494  1.00  0.00              
ATOM    114  CA  THR   114       8.560  14.980  -9.095  1.00  0.00              
ATOM    115  CA  GLY   115       6.681  15.003  -5.732  1.00  0.00              
ATOM    116  CA  TRP   116       3.575  13.619  -7.476  1.00  0.00              
ATOM    117  CA  LEU   117       5.467  10.646  -8.953  1.00  0.00              
ATOM    118  CA  LEU   118       7.023   9.867  -5.556  1.00  0.00              
ATOM    119  CA  GLU   119       3.697  10.010  -3.680  1.00  0.00              
ATOM    120  CA  ALA   120       1.938   7.746  -6.162  1.00  0.00              
ATOM    121  CA  ALA   121       4.733   5.238  -6.132  1.00  0.00              
ATOM    122  CA  VAL   122       4.795   5.171  -2.304  1.00  0.00              
ATOM    123  CA  HIS   123       1.060   4.544  -2.158  1.00  0.00              
ATOM    124  CA  LEU   124       1.303   1.690  -4.686  1.00  0.00              
ATOM    125  CA  TYR   125       4.197   0.040  -2.815  1.00  0.00              
ATOM    126  CA  HIS   126       2.511   0.251   0.527  1.00  0.00              
ATOM    127  CA  HIS   127      -0.693  -1.312  -0.868  1.00  0.00              
ATOM    128  CA  ARG   128       1.299  -4.290  -2.200  1.00  0.00              
ATOM    129  CA  SER   129      -1.086  -7.090  -1.167  1.00  0.00              
ATOM    130  CA  GLN   130      -3.861  -5.599  -3.286  1.00  0.00              
ATOM    131  CA  LEU   131      -1.632  -5.281  -6.378  1.00  0.00              
ATOM    132  CA  LEU   132      -0.246  -8.855  -6.146  1.00  0.00              
ATOM    133  CA  ASP   133      -3.726 -10.291  -5.685  1.00  0.00              
ATOM    134  CA  TYR   134      -5.004  -8.314  -8.726  1.00  0.00              
ATOM    135  CA  LEU   135      -2.097  -9.606 -10.777  1.00  0.00              
ATOM    136  CA  ASN   136      -2.765 -13.206  -9.647  1.00  0.00              
ATOM    137  CA  LEU   137      -6.414 -12.958 -10.529  1.00  0.00              
ATOM    138  CA  LEU   138      -5.719 -11.556 -13.982  1.00  0.00              
ATOM    139  CA  GLY   139      -3.164 -14.317 -14.676  1.00  0.00              
ATOM    140  CA  TYR   140      -5.360 -17.189 -13.379  1.00  0.00              
ATOM    141  CA  ASP   141      -8.640 -16.395 -15.114  1.00  0.00              
ATOM    142  CA  ILE   142      -7.663 -15.459 -18.716  1.00  0.00              
ATOM    143  CA  LYS   143     -10.818 -16.549 -20.444  1.00  0.00              
ATOM    144  CA  LEU   144     -11.471 -13.337 -22.468  1.00  0.00              
ATOM    145  CA  ASP   145     -13.112 -14.751 -25.578  1.00  0.00              
ATOM    146  CA  LEU   146     -16.316 -12.131 -26.328  1.00  0.00              
ATOM    147  CA  PHE   147     -16.575 -11.618 -22.163  1.00  0.00              
ATOM    148  CA  GLU   148     -15.178 -10.401 -18.897  1.00  0.00              
TER                                                                             
END
