
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS599_3
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_3.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        52 - 93          4.99    23.98
  LCS_AVERAGE:     23.56

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31         2 - 32          1.96    23.68
  LCS_AVERAGE:     13.06

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          0.75    23.10
  LCS_AVERAGE:      9.60

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      0   28   38     0    0    3    9   14   18   24   29   31   31   32   34   34   36   37   40   43   46   48   51 
LCS_GDT     T       2     T       2     25   31   39     5   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   47   50 
LCS_GDT     D       3     D       3     25   31   39     7   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     W       4     W       4     25   31   39     4   19   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     Q       5     Q       5     25   31   39     9   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     Q       6     Q       6     25   31   39    11   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     A       7     A       7     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   47   50   52 
LCS_GDT     L       8     L       8     25   31   39     9   23   25   26   26   27   29   29   32   32   33   34   34   39   42   45   48   50   53   54 
LCS_GDT     D       9     D       9     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   41   46   48   50   51   54 
LCS_GDT     R      10     R      10     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   40   45   48   50   51   54 
LCS_GDT     H      11     H      11     25   31   39     7   23   25   26   26   27   29   29   32   32   33   34   37   39   42   46   48   50   53   54 
LCS_GDT     V      12     V      12     25   31   39     5   17   25   26   26   27   29   29   32   32   33   34   37   39   42   46   48   50   53   54 
LCS_GDT     G      13     G      13     25   31   39    11   23   25   26   26   27   29   29   32   32   33   34   34   37   41   46   48   50   51   54 
LCS_GDT     V      14     V      14     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   39   41   46   48   50   51   54 
LCS_GDT     G      15     G      15     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   36   39   41   46   48   50   51   54 
LCS_GDT     V      16     V      16     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   38   41   45   49   51   52 
LCS_GDT     R      17     R      17     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     T      18     T      18     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     T      19     T      19     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     R      20     R      20     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     D      21     D      21     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     L      22     L      22     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     I      23     I      23     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     R      24     R      24     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     L      25     L      25     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     I      26     I      26     25   31   39    14   23   25   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     Q      27     Q      27      5   31   39     4    5    5    5   22   27   28   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     P      28     P      28      5   31   39     4    5    5    6   19   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     E      29     E      29      5   31   39     4    5    5    5    6   22   28   28   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     D      30     D      30      5   31   39     4    8   22   26   26   27   29   29   32   32   33   34   34   36   37   40   43   46   48   51 
LCS_GDT     W      31     W      31      5   31   39     4    5    5    5    7   18   29   29   32   32   33   34   34   36   37   40   43   46   47   51 
LCS_GDT     D      32     D      32      5   31   39     3    4    9   21   24   27   29   29   32   32   33   33   34   36   37   40   43   46   48   51 
LCS_GDT     K      33     K      33      5    6   39     3    4    5    6   14   19   25   26   32   32   33   33   33   34   37   40   43   46   48   51 
LCS_GDT     R      34     R      34      5    6   39     3    4    5    6    9   13   20   25   29   31   33   33   33   34   37   40   43   46   48   50 
LCS_GDT     P      35     P      35      5    6   39     3    4    5    6    7   11   15   17   21   24   28   32   32   34   37   40   42   45   46   50 
LCS_GDT     I      36     I      36      5    6   39     4    4    5    6    6    7    8   10   15   20   25   27   29   30   33   36   38   39   42   44 
LCS_GDT     S      37     S      37      4    6   39     4    4    4    8   11   15   17   20   21   24   25   27   29   32   33   36   38   41   42   46 
LCS_GDT     G      38     G      38      4    5   39     4    4    4    5    6    7    8   13   18   22   24   27   30   33   37   40   42   45   46   50 
LCS_GDT     K      39     K      39      4    5   39     4    4    5    6    6    7    8    9   11   17   25   27   30   33   37   40   42   45   47   50 
LCS_GDT     R      40     R      40      3   16   39     1    3    4    7   11   15   17   20   21   24   25   29   32   33   37   40   43   46   48   50 
LCS_GDT     S      41     S      41     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   36   40   43   46   48   50 
LCS_GDT     V      42     V      42     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   36   40   43   46   48   51 
LCS_GDT     Y      43     Y      43     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   36   40   43   46   48   51 
LCS_GDT     E      44     E      44     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   36   40   43   46   48   51 
LCS_GDT     V      45     V      45     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   36   40   43   46   48   51 
LCS_GDT     A      46     A      46     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   37   40   43   46   48   51 
LCS_GDT     V      47     V      47     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   36   40   43   46   48   51 
LCS_GDT     H      48     H      48     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   33   37   41   46   50   53   55 
LCS_GDT     L      49     L      49     14   17   31    12   12   13   15   16   17   18   20   21   24   25   27   29   32   37   41   46   50   53   55 
LCS_GDT     A      50     A      50     14   17   41    12   12   13   15   16   17   18   20   21   24   25   28   32   36   40   45   47   50   53   55 
LCS_GDT     V      51     V      51     14   17   41    12   12   13   15   16   17   18   20   21   24   30   34   39   41   45   47   50   51   55   58 
LCS_GDT     L      52     L      52     14   17   42    12   12   15   20   22   24   24   25   27   28   30   34   39   41   45   48   52   53   56   58 
LCS_GDT     L      53     L      53     14   17   42     4    5   13   15   16   17   22   24   27   28   32   35   39   43   45   48   52   53   56   58 
LCS_GDT     E      54     E      54     14   17   42     4    5   13   15   16   17   18   20   21   24   31   35   37   43   45   48   52   53   56   58 
LCS_GDT     A      55     A      55      5   17   42     4    5   13   15   16   17   18   20   21   25   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     D      56     D      56      3   17   42     3    3    4    4    6    8   14   17   17   23   29   34   37   39   42   46   48   53   56   58 
LCS_GDT     L      57     L      57      3   17   42     3    3    4   13   16   17   18   20   21   24   26   31   35   39   42   46   48   50   53   54 
LCS_GDT     R      58     R      58      3    4   42     0    6   11   13   14   17   18   20   24   27   30   34   37   39   42   46   48   50   53   54 
LCS_GDT     I      59     I      59      3   16   42     1    3    4    7   13   17   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     A      60     A      60      3   16   42     3    3    8    8   13   18   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     T      61     T      61     14   16   42     3    5   12   14   15   15   17   22   24   27   30   33   36   39   42   46   48   50   53   54 
LCS_GDT     G      62     G      62     14   16   42     7   13   13   14   15   19   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     A      63     A      63     14   16   42    12   13   13   14   17   19   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     T      64     T      64     14   16   42    12   13   13   14   17   19   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     A      65     A      65     14   16   42    12   13   13   14   15   16   17   21   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     D      66     D      66     14   16   42    12   13   13   14   15   16   20   23   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     E      67     E      67     14   16   42    12   13   13   14   17   19   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     M      68     M      68     14   16   42    12   13   13   14   17   19   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     A      69     A      69     14   16   42    12   13   13   14   17   19   21   24   26   28   31   34   37   39   42   46   48   50   53   54 
LCS_GDT     Q      70     Q      70     14   16   42    12   13   13   14   17   19   21   24   26   28   31   34   37   39   42   46   50   53   56   58 
LCS_GDT     F      71     F      71     14   16   42    12   13   13   14   15   17   21   24   26   28   31   34   37   39   42   48   52   53   56   58 
LCS_GDT     Y      72     Y      72     14   16   42    12   13   13   14   15   16   20   24   26   28   31   33   37   39   42   46   48   50   56   58 
LCS_GDT     A      73     A      73     14   16   42    12   13   13   14   17   19   21   24   26   28   31   34   37   39   42   48   52   53   56   58 
LCS_GDT     V      74     V      74     14   16   42    12   13   13   14   15   16   19   22   24   28   30   33   37   42   45   48   52   53   56   58 
LCS_GDT     P      75     P      75      7   16   42     6    9   11   13   17   19   21   24   27   28   31   35   37   43   45   48   52   53   56   58 
LCS_GDT     V      76     V      76      7   24   42     6    9   11   13   17   22   24   25   27   28   31   35   37   43   45   48   52   53   56   58 
LCS_GDT     L      77     L      77      7   24   42     6    9   11   15   22   24   24   25   27   28   31   35   37   43   45   48   52   53   56   58 
LCS_GDT     P      78     P      78      7   24   42     6    9   11   17   22   24   24   25   27   28   31   34   37   39   45   48   52   53   56   58 
LCS_GDT     E      79     E      79     18   24   42     6    9   11   17   22   24   24   25   27   28   31   34   37   39   42   46   52   53   56   58 
LCS_GDT     Q      80     Q      80     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   37   43   45   48   52   53   56   58 
LCS_GDT     L      81     L      81     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     V      82     V      82     20   24   42    13   17   20   20   22   24   24   25   27   28   31   34   37   43   45   48   52   53   56   58 
LCS_GDT     D      83     D      83     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   37   43   45   48   52   53   56   58 
LCS_GDT     R      84     R      84     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     L      85     L      85     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     D      86     D      86     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     Q      87     Q      87     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     S      88     S      88     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     W      89     W      89     20   24   42    13   17   20   20   22   24   24   25   27   28   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     Q      90     Q      90     20   24   42    13   17   20   20   22   24   24   25   27   27   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     Y      91     Y      91     20   24   42    13   17   20   20   22   24   24   25   27   27   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     Y      92     Y      92     20   24   42    10   17   20   20   22   24   24   25   27   27   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     Q      93     Q      93     20   24   42    13   17   20   20   22   24   24   25   27   27   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     D      94     D      94     20   24   37    10   17   20   20   22   24   24   25   27   27   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     R      95     R      95     20   24   36    10   17   20   20   22   24   24   25   27   27   30   35   39   43   45   48   52   53   56   58 
LCS_GDT     L      96     L      96     20   24   36     4   12   20   20   22   24   24   25   27   27   29   32   37   43   45   48   52   53   56   58 
LCS_GDT     M      97     M      97     20   24   36    10   17   20   20   22   24   24   25   27   27   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     A      98     A      98     20   24   36    10   17   20   20   22   24   24   25   27   27   30   35   39   43   45   48   52   53   56   58 
LCS_GDT     D      99     D      99     20   24   36     3    4   20   20   22   24   24   25   27   27   28   32   32   43   45   48   52   53   56   58 
LCS_GDT     F     100     F     100      3   22   32     3    3    3    5   10   13   15   20   22   23   25   30   34   39   42   46   50   53   56   58 
LCS_GDT     S     101     S     101      3    3   30     3    3    3    4    5    7   11   15   17   21   22   24   29   33   37   42   46   50   54   56 
LCS_GDT     T     102     T     102      4    5   29     3    4    4    5    6    6    8   11   15   21   22   24   25   30   31   33   36   39   41   48 
LCS_GDT     E     103     E     103      4    5   29     3    4    4    5    6    6    8    9   11   15   17   22   24   26   28   30   34   38   44   48 
LCS_GDT     T     104     T     104      4    5   22     3    4    4    5    6    6    8    9   10   12   15   18   19   21   23   26   27   32   34   37 
LCS_GDT     T     105     T     105      4    5   17     3    4    4    4    4    6    8    9   10   12   15   18   19   21   23   26   29   33   36   39 
LCS_GDT     Y     106     Y     106      3    8   18     3    3    4    7    8   10   10   11   14   17   17   19   21   24   27   31   34   38   41   44 
LCS_GDT     W     107     W     107      5    8   22     4    5    6    7    8   10   10   11   14   17   17   19   21   24   27   31   34   38   41   44 
LCS_GDT     G     108     G     108      5    8   24     4    5    6    7    8   10   10   11   14   17   17   19   22   24   27   31   38   42   46   50 
LCS_GDT     V     109     V     109      5    8   25     4    5    6    7    8   10   10   12   14   17   21   24   28   33   37   41   46   49   50   53 
LCS_GDT     T     110     T     110      5    8   27     4    5    6    8   11   14   17   19   20   21   24   26   34   36   40   42   46   49   54   55 
LCS_GDT     D     111     D     111      5   18   27     3    5    5    9   13   17   18   19   20   24   30   34   39   41   45   47   50   53   56   58 
LCS_GDT     S     112     S     112     17   18   27     9   16   17   17   17   17   18   18   20   24   30   34   39   42   45   48   52   53   56   58 
LCS_GDT     T     113     T     113     17   18   27    13   16   17   17   17   17   18   19   20   21   31   34   39   42   45   48   52   53   56   58 
LCS_GDT     T     114     T     114     17   18   27    13   16   17   17   17   17   18   19   20   21   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     G     115     G     115     17   18   27    13   16   17   17   17   17   18   19   20   24   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     W     116     W     116     17   18   27    13   16   17   17   17   17   18   19   20   24   31   34   39   43   45   48   52   53   56   58 
LCS_GDT     L     117     L     117     17   18   27    13   16   17   17   17   17   18   19   20   21   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     L     118     L     118     17   18   27    13   16   17   17   17   17   18   19   20   21   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     E     119     E     119     17   18   27    12   16   17   17   17   17   18   19   20   24   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     A     120     A     120     17   18   27    13   16   17   17   17   17   18   19   20   24   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     A     121     A     121     17   18   27    13   16   17   17   17   17   18   19   20   31   32   35   39   43   45   48   52   53   56   58 
LCS_GDT     V     122     V     122     17   18   27    13   16   17   17   17   17   18   19   20   29   32   34   39   43   45   48   52   53   56   58 
LCS_GDT     H     123     H     123     17   18   27    13   16   17   17   17   17   18   19   20   24   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     L     124     L     124     17   18   27    13   16   17   17   17   17   18   19   20   24   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     Y     125     Y     125     17   18   27    13   16   17   17   17   17   18   19   20   24   30   34   39   43   45   48   52   53   56   58 
LCS_GDT     H     126     H     126     17   18   27    13   16   17   17   17   17   18   19   20   21   24   26   29   42   45   48   52   53   56   58 
LCS_GDT     H     127     H     127     17   18   27    11   16   17   17   17   17   18   19   20   21   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     R     128     R     128     17   18   27    11   12   17   17   17   17   18   19   20   24   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     S     129     S     129     13   18   27    11   12   13   13   13   13   13   18   20   24   30   34   39   43   45   48   52   53   56   58 
LCS_GDT     Q     130     Q     130     13   14   27    11   12   13   13   13   13   16   17   20   24   31   35   39   43   45   48   52   53   56   58 
LCS_GDT     L     131     L     131     13   14   27    11   12   13   13   13   13   14   19   22   24   30   34   39   43   45   48   52   53   56   58 
LCS_GDT     L     132     L     132     13   14   27    11   12   13   13   13   16   17   18   20   24   30   34   39   41   45   47   50   51   56   58 
LCS_GDT     D     133     D     133     13   14   27    11   12   13   13   13   13   14   17   20   24   30   34   39   41   45   47   50   51   56   58 
LCS_GDT     Y     134     Y     134     13   14   27    11   12   13   13   13   13   22   23   23   25   30   33   36   39   45   47   49   51   56   58 
LCS_GDT     L     135     L     135     13   14   27    11   12   13   13   13   13   13   17   22   24   28   32   36   39   42   46   48   50   53   55 
LCS_GDT     N     136     N     136     13   14   27    11   12   13   13   13   13   13   16   18   20   25   31   36   39   42   45   48   50   53   55 
LCS_GDT     L     137     L     137     13   14   23    11   12   13   13   13   13   13   17   23   24   25   28   34   37   42   45   47   50   53   55 
LCS_GDT     L     138     L     138     13   14   23    11   12   13   13   13   13   13   16   18   20   23   25   28   33   40   41   46   50   53   55 
LCS_GDT     G     139     G     139     13   14   23     9   12   13   13   13   13   13   16   18   20   23   25   27   30   35   41   45   48   53   54 
LCS_GDT     Y     140     Y     140      4   14   23     3    7    7    9   13   16   19   20   22   23   25   26   29   33   37   41   45   48   53   54 
LCS_GDT     D     141     D     141      4    8   23     3    4    4    8   13   14   17   20   22   23   25   26   29   32   33   34   39   43   46   49 
LCS_GDT     I     142     I     142      6    8   23     4    7    7    8    8    9   10   11   14   17   23   26   29   32   33   34   36   41   45   48 
LCS_GDT     K     143     K     143      6    8   15     4    7    7    8    8    9   10   11   14   17   23   26   29   32   33   34   36   38   39   40 
LCS_GDT     L     144     L     144      6    8   15     4    7    7    8    8    9   10   11   14   17   23   26   29   32   33   34   36   38   39   40 
LCS_GDT     D     145     D     145      6    8   15     4    7    7    8    8    9   10   11   14   15   16   19   20   23   33   34   36   38   39   40 
LCS_GDT     L     146     L     146      6    8   15     4    7    7    8    8    9   10   11   14   15   16   18   20   20   22   23   25   26   32   35 
LCS_GDT     F     147     F     147      6    8   15     4    7    7    8    8    8   10   11   14   15   16   18   20   20   20   20   25   26   28   29 
LCS_AVERAGE  LCS_A:  15.41  (   9.60   13.06   23.56 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     23     25     26     26     27     29     29     32     32     33     35     39     43     45     48     52     53     56     58 
GDT PERCENT_CA   9.52  15.65  17.01  17.69  17.69  18.37  19.73  19.73  21.77  21.77  22.45  23.81  26.53  29.25  30.61  32.65  35.37  36.05  38.10  39.46
GDT RMS_LOCAL    0.35   0.64   0.75   0.98   0.98   1.26   1.68   1.68   2.52   2.52   3.00   4.79   4.81   5.24   5.22   5.48   5.78   6.05   6.41   6.55
GDT RMS_ALL_CA  23.08  23.07  23.10  23.20  23.20  23.28  23.76  23.76  24.33  24.33  25.19  25.39  24.82  25.22  24.81  25.69  25.52  25.31  25.09  25.09

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          8.004
LGA    T       2      T       2          0.859
LGA    D       3      D       3          0.528
LGA    W       4      W       4          0.553
LGA    Q       5      Q       5          0.613
LGA    Q       6      Q       6          0.511
LGA    A       7      A       7          1.333
LGA    L       8      L       8          0.924
LGA    D       9      D       9          0.588
LGA    R      10      R      10          1.077
LGA    H      11      H      11          0.706
LGA    V      12      V      12          0.724
LGA    G      13      G      13          0.837
LGA    V      14      V      14          1.141
LGA    G      15      G      15          1.440
LGA    V      16      V      16          1.434
LGA    R      17      R      17          1.296
LGA    T      18      T      18          0.840
LGA    T      19      T      19          1.355
LGA    R      20      R      20          2.234
LGA    D      21      D      21          1.689
LGA    L      22      L      22          0.734
LGA    I      23      I      23          2.307
LGA    R      24      R      24          2.826
LGA    L      25      L      25          1.226
LGA    I      26      I      26          2.100
LGA    Q      27      Q      27          4.322
LGA    P      28      P      28          3.001
LGA    E      29      E      29          4.357
LGA    D      30      D      30          1.397
LGA    W      31      W      31          3.660
LGA    D      32      D      32          3.564
LGA    K      33      K      33         10.530
LGA    R      34      R      34         14.027
LGA    P      35      P      35         20.497
LGA    I      36      I      36         23.356
LGA    S      37      S      37         26.365
LGA    G      38      G      38         22.149
LGA    K      39      K      39         17.101
LGA    R      40      R      40         16.498
LGA    S      41      S      41         17.087
LGA    V      42      V      42         13.155
LGA    Y      43      Y      43         11.427
LGA    E      44      E      44         13.994
LGA    V      45      V      45         12.201
LGA    A      46      A      46         10.190
LGA    V      47      V      47         12.043
LGA    H      48      H      48         11.795
LGA    L      49      L      49         10.485
LGA    A      50      A      50         13.109
LGA    V      51      V      51         13.935
LGA    L      52      L      52         12.036
LGA    L      53      L      53         11.790
LGA    E      54      E      54         16.550
LGA    A      55      A      55         18.034
LGA    D      56      D      56         18.415
LGA    L      57      L      57         17.765
LGA    R      58      R      58         19.181
LGA    I      59      I      59         21.698
LGA    A      60      A      60         16.705
LGA    T      61      T      61         18.202
LGA    G      62      G      62         19.041
LGA    A      63      A      63         21.462
LGA    T      64      T      64         24.575
LGA    A      65      A      65         30.360
LGA    D      66      D      66         31.143
LGA    E      67      E      67         27.561
LGA    M      68      M      68         30.129
LGA    A      69      A      69         35.770
LGA    Q      70      Q      70         34.719
LGA    F      71      F      71         32.133
LGA    Y      72      Y      72         36.848
LGA    A      73      A      73         41.248
LGA    V      74      V      74         39.588
LGA    P      75      P      75         42.562
LGA    V      76      V      76         38.734
LGA    L      77      L      77         42.522
LGA    P      78      P      78         40.028
LGA    E      79      E      79         41.457
LGA    Q      80      Q      80         37.914
LGA    L      81      L      81         32.073
LGA    V      82      V      82         31.096
LGA    D      83      D      83         32.582
LGA    R      84      R      84         26.899
LGA    L      85      L      85         22.093
LGA    D      86      D      86         25.199
LGA    Q      87      Q      87         24.238
LGA    S      88      S      88         16.857
LGA    W      89      W      89         17.071
LGA    Q      90      Q      90         22.482
LGA    Y      91      Y      91         18.100
LGA    Y      92      Y      92         14.184
LGA    Q      93      Q      93         20.826
LGA    D      94      D      94         24.272
LGA    R      95      R      95         19.884
LGA    L      96      L      96         21.678
LGA    M      97      M      97         28.878
LGA    A      98      A      98         29.225
LGA    D      99      D      99         28.572
LGA    F     100      F     100         28.785
LGA    S     101      S     101         30.801
LGA    T     102      T     102         27.448
LGA    E     103      E     103         28.554
LGA    T     104      T     104         30.613
LGA    T     105      T     105         27.783
LGA    Y     106      Y     106         27.697
LGA    W     107      W     107         27.862
LGA    G     108      G     108         30.902
LGA    V     109      V     109         28.924
LGA    T     110      T     110         30.312
LGA    D     111      D     111         26.180
LGA    S     112      S     112         28.239
LGA    T     113      T     113         24.748
LGA    T     114      T     114         19.702
LGA    G     115      G     115         18.783
LGA    W     116      W     116         19.196
LGA    L     117      L     117         14.558
LGA    L     118      L     118         10.608
LGA    E     119      E     119         12.872
LGA    A     120      A     120         14.590
LGA    A     121      A     121         10.127
LGA    V     122      V     122          9.110
LGA    H     123      H     123         14.465
LGA    L     124      L     124         16.783
LGA    Y     125      Y     125         15.245
LGA    H     126      H     126         16.163
LGA    H     127      H     127         22.292
LGA    R     128      R     128         25.304
LGA    S     129      S     129         25.397
LGA    Q     130      Q     130         25.508
LGA    L     131      L     131         27.385
LGA    L     132      L     132         30.486
LGA    D     133      D     133         31.436
LGA    Y     134      Y     134         32.227
LGA    L     135      L     135         35.244
LGA    N     136      N     136         38.142
LGA    L     137      L     137         39.296
LGA    L     138      L     138         40.824
LGA    G     139      G     139         44.705
LGA    Y     140      Y     140         44.721
LGA    D     141      D     141         41.726
LGA    I     142      I     142         41.315
LGA    K     143      K     143         38.378
LGA    L     144      L     144         35.711
LGA    D     145      D     145         34.343
LGA    L     146      L     146         34.540
LGA    F     147      F     147         34.629

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     29    1.68    21.429    18.969     1.633

LGA_LOCAL      RMSD =  1.676  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.719  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 21.585  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.481298 * X  +   0.342298 * Y  +   0.806960 * Z  +   5.235035
  Y_new =  -0.397846 * X  +  -0.905622 * Y  +   0.146860 * Z  +   6.753658
  Z_new =   0.781071 * X  +  -0.250362 * Y  +   0.572056 * Z  +  -3.983537 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.412539    2.729054  [ DEG:   -23.6367    156.3633 ]
  Theta =  -0.896378   -2.245214  [ DEG:   -51.3587   -128.6413 ]
  Phi   =  -2.450835    0.690757  [ DEG:  -140.4225     39.5775 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_3                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_3.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   29   1.68  18.969    21.58
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_3
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      13.700  19.873   1.092  1.00  0.00              
ATOM      2  CA  THR     2      16.892  18.682   0.037  1.00  0.00              
ATOM      3  CA  ASP     3      15.885  16.844   3.559  1.00  0.00              
ATOM      4  CA  TRP     4      12.911  16.030   1.035  1.00  0.00              
ATOM      5  CA  GLN     5      15.384  14.099  -1.043  1.00  0.00              
ATOM      6  CA  GLN     6      17.324  12.127   1.485  1.00  0.00              
ATOM      7  CA  ALA     7      14.450  10.663   3.414  1.00  0.00              
ATOM      8  CA  LEU     8      12.515   9.920   0.188  1.00  0.00              
ATOM      9  CA  ASP     9      15.389   8.077  -1.526  1.00  0.00              
ATOM     10  CA  ARG    10      15.885   5.857   1.533  1.00  0.00              
ATOM     11  CA  HIS    11      12.228   5.040   1.771  1.00  0.00              
ATOM     12  CA  VAL    12      12.126   4.159  -1.942  1.00  0.00              
ATOM     13  CA  GLY    13      15.029   1.744  -1.604  1.00  0.00              
ATOM     14  CA  VAL    14      14.021  -0.204   1.529  1.00  0.00              
ATOM     15  CA  GLY    15      10.268  -0.653   0.875  1.00  0.00              
ATOM     16  CA  VAL    16      11.113  -1.799  -2.658  1.00  0.00              
ATOM     17  CA  ARG    17      13.893  -4.323  -1.924  1.00  0.00              
ATOM     18  CA  THR    18      11.914  -6.161   0.796  1.00  0.00              
ATOM     19  CA  THR    19       8.979  -6.148  -1.640  1.00  0.00              
ATOM     20  CA  ARG    20      10.943  -7.572  -4.601  1.00  0.00              
ATOM     21  CA  ASP    21      12.242 -10.334  -2.342  1.00  0.00              
ATOM     22  CA  LEU    22       8.725 -11.170  -1.166  1.00  0.00              
ATOM     23  CA  ILE    23       7.583 -11.219  -4.809  1.00  0.00              
ATOM     24  CA  ARG    24      10.458 -13.509  -5.763  1.00  0.00              
ATOM     25  CA  LEU    25       9.660 -15.897  -2.902  1.00  0.00              
ATOM     26  CA  ILE    26       5.959 -16.044  -3.830  1.00  0.00              
ATOM     27  CA  GLN    27       6.698 -16.710  -7.494  1.00  0.00              
ATOM     28  CA  PRO    28       9.038 -19.645  -7.422  1.00  0.00              
ATOM     29  CA  GLU    29       6.569 -21.624  -5.398  1.00  0.00              
ATOM     30  CA  ASP    30       3.320 -20.794  -6.964  1.00  0.00              
ATOM     31  CA  TRP    31       4.191 -20.835 -10.628  1.00  0.00              
ATOM     32  CA  ASP    32       3.393 -17.889 -12.968  1.00  0.00              
ATOM     33  CA  LYS    33       5.871 -17.112 -15.750  1.00  0.00              
ATOM     34  CA  ARG    34       6.881 -13.437 -15.983  1.00  0.00              
ATOM     35  CA  PRO    35       9.391 -12.128 -18.361  1.00  0.00              
ATOM     36  CA  ILE    36      12.332 -10.850 -16.275  1.00  0.00              
ATOM     37  CA  SER    37      13.142  -7.357 -17.638  1.00  0.00              
ATOM     38  CA  GLY    38       9.503  -6.250 -17.752  1.00  0.00              
ATOM     39  CA  LYS    39       8.943  -7.316 -14.118  1.00  0.00              
ATOM     40  CA  ARG    40      11.848  -5.083 -12.973  1.00  0.00              
ATOM     41  CA  SER    41      10.508  -2.042 -14.864  1.00  0.00              
ATOM     42  CA  VAL    42       6.996  -2.368 -13.388  1.00  0.00              
ATOM     43  CA  TYR    43       8.309  -2.660  -9.814  1.00  0.00              
ATOM     44  CA  GLU    44      10.449   0.423 -10.363  1.00  0.00              
ATOM     45  CA  VAL    45       7.554   2.482 -11.786  1.00  0.00              
ATOM     46  CA  ALA    46       5.342   1.562  -8.819  1.00  0.00              
ATOM     47  CA  VAL    47       8.030   2.391  -6.273  1.00  0.00              
ATOM     48  CA  HIS    48       8.632   5.754  -7.968  1.00  0.00              
ATOM     49  CA  LEU    49       4.966   6.821  -8.112  1.00  0.00              
ATOM     50  CA  ALA    50       4.497   6.037  -4.410  1.00  0.00              
ATOM     51  CA  VAL    51       7.641   8.030  -3.594  1.00  0.00              
ATOM     52  CA  LEU    52       6.924  11.216  -5.578  1.00  0.00              
ATOM     53  CA  LEU    53       3.519  11.366  -3.866  1.00  0.00              
ATOM     54  CA  GLU    54       4.650  10.941  -0.228  1.00  0.00              
ATOM     55  CA  ALA    55       7.796  13.114  -0.459  1.00  0.00              
ATOM     56  CA  ASP    56       7.214  15.761   2.136  1.00  0.00              
ATOM     57  CA  LEU    57       8.962  18.744   0.487  1.00  0.00              
ATOM     58  CA  ARG    58      11.524  18.690  -2.291  1.00  0.00              
ATOM     59  CA  ILE    59      13.690  21.769  -3.094  1.00  0.00              
ATOM     60  CA  ALA    60      15.380  21.496  -6.424  1.00  0.00              
ATOM     61  CA  THR    61      17.889  23.943  -7.755  1.00  0.00              
ATOM     62  CA  GLY    62      16.644  24.548 -11.353  1.00  0.00              
ATOM     63  CA  ALA    63      13.061  25.216 -10.210  1.00  0.00              
ATOM     64  CA  THR    64      11.218  27.907 -12.201  1.00  0.00              
ATOM     65  CA  ALA    65       9.917  30.932 -10.393  1.00  0.00              
ATOM     66  CA  ASP    66       6.236  29.853 -10.480  1.00  0.00              
ATOM     67  CA  GLU    67       7.117  26.420  -9.142  1.00  0.00              
ATOM     68  CA  MET    68       9.191  27.938  -6.316  1.00  0.00              
ATOM     69  CA  ALA    69       6.341  30.285  -5.338  1.00  0.00              
ATOM     70  CA  GLN    70       4.008  27.311  -5.170  1.00  0.00              
ATOM     71  CA  PHE    71       6.419  25.348  -2.965  1.00  0.00              
ATOM     72  CA  TYR    72       6.862  28.313  -0.636  1.00  0.00              
ATOM     73  CA  ALA    73       3.134  29.104  -0.382  1.00  0.00              
ATOM     74  CA  VAL    74       2.052  25.543   0.422  1.00  0.00              
ATOM     75  CA  PRO    75      -1.673  25.983   0.703  1.00  0.00              
ATOM     76  CA  VAL    76      -3.099  22.712  -0.483  1.00  0.00              
ATOM     77  CA  LEU    77      -5.981  21.402   1.536  1.00  0.00              
ATOM     78  CA  PRO    78      -6.259  18.046   3.192  1.00  0.00              
ATOM     79  CA  GLU    79      -8.851  16.805   0.692  1.00  0.00              
ATOM     80  CA  GLN    80      -6.691  17.730  -2.310  1.00  0.00              
ATOM     81  CA  LEU    81      -3.688  15.958  -0.867  1.00  0.00              
ATOM     82  CA  VAL    82      -5.822  12.847  -0.241  1.00  0.00              
ATOM     83  CA  ASP    83      -7.096  12.904  -3.784  1.00  0.00              
ATOM     84  CA  ARG    84      -3.636  13.160  -5.299  1.00  0.00              
ATOM     85  CA  LEU    85      -2.291  10.349  -3.221  1.00  0.00              
ATOM     86  CA  ASP    86      -5.204   8.115  -4.159  1.00  0.00              
ATOM     87  CA  GLN    87      -4.692   8.842  -7.851  1.00  0.00              
ATOM     88  CA  SER    88      -0.985   7.963  -7.686  1.00  0.00              
ATOM     89  CA  TRP    89      -1.537   4.628  -5.893  1.00  0.00              
ATOM     90  CA  GLN    90      -4.199   3.740  -8.391  1.00  0.00              
ATOM     91  CA  TYR    91      -1.997   4.572 -11.411  1.00  0.00              
ATOM     92  CA  TYR    92       0.629   2.086 -10.351  1.00  0.00              
ATOM     93  CA  GLN    93      -1.853  -0.713  -9.689  1.00  0.00              
ATOM     94  CA  ASP    94      -3.590  -0.211 -13.088  1.00  0.00              
ATOM     95  CA  ARG    95      -0.330  -0.224 -15.025  1.00  0.00              
ATOM     96  CA  LEU    96       0.929  -3.384 -13.383  1.00  0.00              
ATOM     97  CA  MET    97      -2.359  -5.178 -14.050  1.00  0.00              
ATOM     98  CA  ALA    98      -2.300  -4.079 -17.714  1.00  0.00              
ATOM     99  CA  ASP    99       1.253  -5.187 -18.404  1.00  0.00              
ATOM    100  CA  PHE   100       0.447  -8.595 -16.841  1.00  0.00              
ATOM    101  CA  SER   101      -2.734  -9.023 -18.872  1.00  0.00              
ATOM    102  CA  THR   102      -1.406  -8.078 -22.340  1.00  0.00              
ATOM    103  CA  GLU   103       1.422 -10.584 -21.931  1.00  0.00              
ATOM    104  CA  THR   104      -0.477 -13.500 -20.397  1.00  0.00              
ATOM    105  CA  THR   105       2.109 -14.359 -17.735  1.00  0.00              
ATOM    106  CA  TYR   106       0.736 -14.437 -14.238  1.00  0.00              
ATOM    107  CA  TRP   107       3.126 -13.973 -11.368  1.00  0.00              
ATOM    108  CA  GLY   108       0.886 -13.996  -8.337  1.00  0.00              
ATOM    109  CA  VAL   109       3.051 -12.251  -5.777  1.00  0.00              
ATOM    110  CA  THR   110       1.399 -10.639  -2.789  1.00  0.00              
ATOM    111  CA  ASP   111       2.907  -7.180  -2.110  1.00  0.00              
ATOM    112  CA  SER   112       2.275  -6.738   1.617  1.00  0.00              
ATOM    113  CA  THR   113       4.859  -4.061   2.405  1.00  0.00              
ATOM    114  CA  THR   114       4.274  -1.903  -0.659  1.00  0.00              
ATOM    115  CA  GLY   115       0.528  -1.868  -0.141  1.00  0.00              
ATOM    116  CA  TRP   116       0.988  -0.944   3.521  1.00  0.00              
ATOM    117  CA  LEU   117       2.876   2.260   2.697  1.00  0.00              
ATOM    118  CA  LEU   118       0.174   3.315   0.209  1.00  0.00              
ATOM    119  CA  GLU   119      -2.528   2.610   2.838  1.00  0.00              
ATOM    120  CA  ALA   120      -0.593   4.666   5.466  1.00  0.00              
ATOM    121  CA  ALA   121      -0.545   7.613   3.126  1.00  0.00              
ATOM    122  CA  VAL   122      -4.287   7.241   2.592  1.00  0.00              
ATOM    123  CA  HIS   123      -4.890   7.026   6.366  1.00  0.00              
ATOM    124  CA  LEU   124      -2.864  10.199   6.908  1.00  0.00              
ATOM    125  CA  TYR   125      -4.993  11.958   4.264  1.00  0.00              
ATOM    126  CA  HIS   126      -8.123  10.889   6.163  1.00  0.00              
ATOM    127  CA  HIS   127      -6.927  12.243   9.551  1.00  0.00              
ATOM    128  CA  ARG   128      -6.919  15.935   8.767  1.00  0.00              
ATOM    129  CA  SER   129      -5.144  17.235  11.869  1.00  0.00              
ATOM    130  CA  GLN   130      -1.980  15.162  11.297  1.00  0.00              
ATOM    131  CA  LEU   131      -2.003  16.164   7.636  1.00  0.00              
ATOM    132  CA  LEU   132      -2.343  19.922   8.175  1.00  0.00              
ATOM    133  CA  ASP   133       0.528  19.820  10.661  1.00  0.00              
ATOM    134  CA  TYR   134       2.688  17.871   8.159  1.00  0.00              
ATOM    135  CA  LEU   135       1.849  20.372   5.403  1.00  0.00              
ATOM    136  CA  ASN   136       2.574  23.295   7.681  1.00  0.00              
ATOM    137  CA  LEU   137       5.966  21.790   8.602  1.00  0.00              
ATOM    138  CA  LEU   138       6.825  21.252   4.955  1.00  0.00              
ATOM    139  CA  GLY   139       5.857  24.836   4.084  1.00  0.00              
ATOM    140  CA  TYR   140       7.900  26.446   6.848  1.00  0.00              
ATOM    141  CA  ASP   141      11.150  24.648   6.226  1.00  0.00              
ATOM    142  CA  ILE   142      13.049  27.089   4.039  1.00  0.00              
ATOM    143  CA  LYS   143      15.970  24.776   3.090  1.00  0.00              
ATOM    144  CA  LEU   144      15.525  24.870  -0.666  1.00  0.00              
ATOM    145  CA  ASP   145      18.383  25.083  -3.083  1.00  0.00              
ATOM    146  CA  LEU   146      16.375  27.381  -5.976  1.00  0.00              
ATOM    147  CA  PHE   147      19.242  27.821  -8.866  1.00  0.00              
ATOM    148  CA  GLU   148      19.651  27.769  -4.685  1.00  0.00              
TER                                                                             
END
