
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS599_4
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_4.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43         1 - 43          4.86    25.46
  LONGEST_CONTINUOUS_SEGMENT:    43         2 - 44          5.00    25.38
  LCS_AVERAGE:     23.27

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29         1 - 29          1.92    23.91
  LCS_AVERAGE:     13.02

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         1 - 25          0.99    24.04
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          0.95    24.06
  LCS_AVERAGE:      9.72

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1     25   29   43     0    4   15   26   27   28   29   31   32   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     T       2     T       2     25   29   43    10   14   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     D       3     D       3     25   29   43    10   16   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     W       4     W       4     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     Q       5     Q       5     25   29   43    10   18   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     Q       6     Q       6     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     A       7     A       7     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     L       8     L       8     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     D       9     D       9     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     R      10     R      10     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     H      11     H      11     25   29   43    10   18   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     V      12     V      12     25   29   43     6   13   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     G      13     G      13     25   29   43     7   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     V      14     V      14     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     G      15     G      15     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     V      16     V      16     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     R      17     R      17     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     T      18     T      18     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     T      19     T      19     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     R      20     R      20     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     D      21     D      21     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     L      22     L      22     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     I      23     I      23     25   29   43    10   19   24   26   27   28   30   31   33   36   38   40   44   48   52   54   56   62   64   67 
LCS_GDT     R      24     R      24     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     L      25     L      25     25   29   43    10   19   24   26   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     I      26     I      26     25   29   43     8   18   23   26   27   28   30   31   33   36   38   39   42   45   51   53   56   62   64   67 
LCS_GDT     Q      27     Q      27      5   29   43     5    5    5   20   27   28   30   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     P      28     P      28      5   29   43     5    5    5    5   11   27   30   31   33   36   38   39   42   45   51   53   56   62   64   67 
LCS_GDT     E      29     E      29      5   29   43     5    5    5    5    6    7    9   13   18   32   36   39   41   42   42   46   50   56   61   67 
LCS_GDT     D      30     D      30      5   28   43     5    5   10   16   24   27   29   31   32   34   36   39   41   42   42   46   50   57   62   67 
LCS_GDT     W      31     W      31      5    6   43     5    5    5    5    5    8   12   18   28   33   35   39   41   42   42   44   46   51   55   61 
LCS_GDT     D      32     D      32      5    6   43     3    4    4    6   14   21   27   31   32   33   35   39   41   42   42   44   49   51   55   64 
LCS_GDT     K      33     K      33      5    6   43     3    4    4    5   10   19   26   30   32   35   38   39   42   45   49   53   56   62   64   67 
LCS_GDT     R      34     R      34      5    6   43     3    4    4    5   10   19   26   30   32   34   38   39   42   45   49   53   56   62   64   67 
LCS_GDT     P      35     P      35      5    6   43     3    4    4    5    6    7    9   12   15   22   29   37   39   41   42   47   50   55   61   67 
LCS_GDT     I      36     I      36      5    6   43     4    4    4    5    7    7   14   18   28   33   36   37   39   41   42   44   47   52   57   65 
LCS_GDT     S      37     S      37      4    6   43     4    4    4    8   12   14   17   20   23   33   36   37   39   41   42   44   47   52   58   65 
LCS_GDT     G      38     G      38      4    6   43     4    4    4    6   14   21   30   31   33   36   38   39   42   45   49   53   56   62   64   67 
LCS_GDT     K      39     K      39      4    6   43     4    4    4    7   14   22   30   31   33   36   38   39   42   45   49   53   56   62   64   67 
LCS_GDT     R      40     R      40      3   15   43     0    3    5    8   14   22   30   31   33   36   38   39   42   46   49   53   56   62   64   67 
LCS_GDT     S      41     S      41     13   19   43    12   12   14   15   16   16   18   20   21   23   35   40   45   48   52   54   56   62   64   67 
LCS_GDT     V      42     V      42     13   19   43    12   12   14   15   16   16   18   20   21   32   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     Y      43     Y      43     13   19   43    12   12   14   15   17   20   24   26   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     E      44     E      44     13   19   43    12   12   14   15   16   16   21   26   29   33   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     V      45     V      45     13   19   31    12   12   14   15   16   16   18   20   21   22   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     A      46     A      46     13   19   31    12   12   14   15   16   16   18   24   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     V      47     V      47     13   19   31    12   12   14   15   16   19   24   27   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     H      48     H      48     13   19   31    12   12   16   21   23   24   25   26   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     L      49     L      49     13   19   37    12   12   14   15   16   21   22   26   27   29   30   35   43   48   52   54   55   62   64   67 
LCS_GDT     A      50     A      50     13   19   37    12   12   14   15   18   20   21   23   27   31   34   38   43   48   52   54   54   58   64   66 
LCS_GDT     V      51     V      51     13   19   37    12   12   14   15   16   16   21   24   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     L      52     L      52     13   19   37    12   12   14   15   16   16   20   24   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     L      53     L      53     13   19   37     5    6   13   15   16   16   18   20   21   26   28   33   43   48   52   54   54   62   64   67 
LCS_GDT     E      54     E      54      6   19   37     5    6    8   15   16   16   18   20   28   29   32   37   43   48   52   54   54   62   64   67 
LCS_GDT     A      55     A      55      6   19   37     5    6    8   15   16   16   18   20   29   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     D      56     D      56      6   19   37     5    6    8   15   16   16   19   24   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     L      57     L      57      4   19   37     3   11   14   14   15   16   18   24   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     R      58     R      58      4   19   37     1    3    9   12   19   22   25   29   31   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     I      59     I      59      3   19   37     3    4   14   14   15   18   21   25   28   31   35   40   44   48   51   54   56   62   64   67 
LCS_GDT     A      60     A      60      3   18   37     3    3    4   10   12   13   20   25   33   36   38   39   42   45   47   52   56   60   62   67 
LCS_GDT     T      61     T      61      4   19   37     3    4    5   11   13   18   21   24   28   36   38   39   42   45   47   52   56   60   62   67 
LCS_GDT     G      62     G      62     14   19   37     4   11   14   15   18   19   21   25   33   36   38   39   42   45   45   50   53   56   62   67 
LCS_GDT     A      63     A      63     14   19   37     7   12   14   15   18   19   21   25   28   34   36   39   42   48   51   53   56   62   64   67 
LCS_GDT     T      64     T      64     14   19   37     7   12   14   15   18   20   21   25   28   31   35   38   42   45   51   53   56   62   64   67 
LCS_GDT     A      65     A      65     14   19   37     9   12   14   15   18   20   21   25   28   31   34   38   40   42   45   53   55   62   64   67 
LCS_GDT     D      66     D      66     14   19   37     9   12   14   15   18   20   21   25   28   31   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     E      67     E      67     14   19   37     9   12   14   15   18   20   24   26   29   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     M      68     M      68     14   19   37     9   12   14   15   18   20   21   25   28   31   34   38   45   48   52   54   56   62   64   67 
LCS_GDT     A      69     A      69     14   19   37     9   12   14   15   18   20   21   25   28   31   34   38   40   42   45   47   50   56   60   66 
LCS_GDT     Q      70     Q      70     14   19   37     9   12   14   15   18   20   21   25   28   31   34   38   40   48   52   54   54   57   62   66 
LCS_GDT     F      71     F      71     14   19   37     9   12   14   15   18   20   21   25   28   31   34   41   43   48   52   54   54   62   64   66 
LCS_GDT     Y      72     Y      72     14   19   37     9   12   14   15   18   20   21   25   28   31   34   38   40   42   45   47   50   52   56   59 
LCS_GDT     A      73     A      73     14   19   37     9   12   14   15   18   20   21   25   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     V      74     V      74     14   19   37     7   12   14   15   18   20   21   25   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     P      75     P      75     14   19   37     7   11   14   15   18   20   21   25   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     V      76     V      76      8   24   37     7    7   10   15   18   24   25   26   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     L      77     L      77      8   24   37     7    7   12   20   23   24   25   26   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     P      78     P      78      8   24   37     7    7   11   20   23   24   25   26   27   31   34   37   40   42   45   47   50   52   54   59 
LCS_GDT     E      79     E      79     21   24   37     7    7   10   16   23   24   25   26   28   31   34   38   40   42   45   47   50   52   54   57 
LCS_GDT     Q      80     Q      80     21   24   37    18   19   20   21   23   24   25   26   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     L      81     L      81     21   24   37    18   19   20   21   23   24   25   26   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     V      82     V      82     21   24   37    18   19   20   21   23   24   25   26   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     D      83     D      83     21   24   37    18   19   20   21   23   24   25   26   27   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     R      84     R      84     21   24   37    18   19   20   21   23   24   25   26   27   29   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     L      85     L      85     21   24   37    18   19   20   21   23   24   25   26   27   29   32   35   38   42   44   47   50   52   54   59 
LCS_GDT     D      86     D      86     21   24   37    18   19   20   21   23   24   25   26   27   29   32   35   38   42   44   45   48   52   54   59 
LCS_GDT     Q      87     Q      87     21   24   33    18   19   20   21   23   24   25   26   27   29   30   30   31   35   38   41   44   49   53   59 
LCS_GDT     S      88     S      88     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   40   49   53   59 
LCS_GDT     W      89     W      89     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   37   41   44   49   53   59 
LCS_GDT     Q      90     Q      90     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   39   46   53   59 
LCS_GDT     Y      91     Y      91     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   39   46   53   59 
LCS_GDT     Y      92     Y      92     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   38   42   53   59 
LCS_GDT     Q      93     Q      93     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   39   43   53   59 
LCS_GDT     D      94     D      94     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   39   46   53   59 
LCS_GDT     R      95     R      95     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   34   36   39   43   53   59 
LCS_GDT     L      96     L      96     21   24   31    15   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   38   40   46   52 
LCS_GDT     M      97     M      97     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   35   36   39   43   53   59 
LCS_GDT     A      98     A      98     21   24   31    18   19   20   21   23   24   25   26   27   29   30   30   31   32   34   36   39   45   53   59 
LCS_GDT     D      99     D      99     21   24   31     3    7   20   21   22   24   25   26   27   29   30   30   31   32   34   36   39   45   53   59 
LCS_GDT     F     100     F     100      3   22   31     3    3    3    5    5    6    8   12   20   29   30   30   31   32   33   35   37   40   53   59 
LCS_GDT     S     101     S     101      3    3   30     3    3    4    5    5    8    9   12   15   19   21   23   26   30   32   35   37   39   40   48 
LCS_GDT     T     102     T     102      4    5   29     3    4    4    4    4    6    9   10   11   14   17   20   23   27   29   32   35   36   40   41 
LCS_GDT     E     103     E     103      4    5   29     3    4    4    4    4    6    9   10   13   16   18   20   23   27   28   30   32   35   36   38 
LCS_GDT     T     104     T     104      4    5   27     3    4    4    4    4    6    9   10   12   13   17   19   22   25   27   27   31   32   35   39 
LCS_GDT     T     105     T     105      4    5   21     3    4    4    4    4    5    9   10   12   13   17   19   23   25   27   27   31   32   35   41 
LCS_GDT     Y     106     Y     106      3    6   14     3    3    4    4    4    5    7    8    9   13   13   17   20   21   24   27   30   36   38   41 
LCS_GDT     W     107     W     107      5    7   16     3    5    5    5    6    7    7    8    9   12   13   17   20   21   24   27   30   36   39   41 
LCS_GDT     G     108     G     108      5    7   23     4    5    5    5    6    7    7    9   11   14   16   18   21   23   25   27   32   35   39   41 
LCS_GDT     V     109     V     109      5    7   26     4    5    5    5    6    7    7    9   11   14   16   19   23   24   27   30   33   36   39   44 
LCS_GDT     T     110     T     110      5    7   27     4    5    5    5    8   11   13   16   19   21   23   24   26   27   28   30   33   36   40   44 
LCS_GDT     D     111     D     111      5   19   27     4    5    5    8   15   16   19   19   21   23   23   26   27   27   28   31   34   43   52   59 
LCS_GDT     S     112     S     112     18   19   27     6   13   16   17   18   18   19   19   21   23   23   26   27   27   31   35   38   42   52   59 
LCS_GDT     T     113     T     113     18   19   27    10   14   16   17   18   18   19   19   21   23   23   26   27   28   31   35   38   46   53   59 
LCS_GDT     T     114     T     114     18   19   27    10   14   16   17   18   18   19   19   21   23   23   26   27   27   29   31   39   46   53   59 
LCS_GDT     G     115     G     115     18   19   27    10   14   16   17   18   18   19   19   21   23   23   26   27   27   29   31   39   46   53   59 
LCS_GDT     W     116     W     116     18   19   27    10   14   16   17   18   18   19   19   21   23   23   26   27   28   31   35   38   46   53   59 
LCS_GDT     L     117     L     117     18   19   27    10   14   16   17   18   18   19   19   21   23   23   26   29   31   33   41   44   49   53   59 
LCS_GDT     L     118     L     118     18   19   27    10   14   16   17   18   18   19   19   21   23   23   26   29   38   40   41   45   50   58   64 
LCS_GDT     E     119     E     119     18   19   27    10   14   16   17   18   18   19   19   21   33   35   36   38   40   44   48   51   58   62   67 
LCS_GDT     A     120     A     120     18   19   27    10   14   16   17   18   18   19   30   31   33   35   36   39   43   47   51   54   62   64   67 
LCS_GDT     A     121     A     121     18   19   27    10   14   16   25   27   28   29   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     V     122     V     122     18   19   27    10   14   16   17   19   22   28   31   33   36   38   41   45   48   52   54   56   62   64   67 
LCS_GDT     H     123     H     123     18   19   27    10   14   16   17   18   18   19   19   30   34   37   41   45   48   52   54   56   62   64   67 
LCS_GDT     L     124     L     124     18   19   27    10   14   16   17   18   18   19   19   21   26   34   38   40   48   51   54   55   62   64   67 
LCS_GDT     Y     125     Y     125     18   19   27     5   14   16   17   18   18   20   25   28   31   34   38   40   42   51   53   55   57   62   66 
LCS_GDT     H     126     H     126     18   19   27     5   13   16   17   18   18   19   19   25   31   34   38   40   42   45   48   54   54   57   61 
LCS_GDT     H     127     H     127     18   19   27    10   14   16   17   18   18   19   19   21   23   33   38   40   42   45   47   50   52   54   59 
LCS_GDT     R     128     R     128     18   19   27    11   12   16   17   18   18   20   24   27   31   34   36   39   42   45   47   50   52   54   59 
LCS_GDT     S     129     S     129     18   19   27    11   12   14   17   18   19   21   25   28   31   34   38   40   42   45   47   50   52   54   59 
LCS_GDT     Q     130     Q     130     12   19   27    11   12   12   15   18   19   20   23   27   29   34   34   39   41   42   46   49   52   53   59 
LCS_GDT     L     131     L     131     12   13   27    11   12   12   12   13   17   17   20   21   24   29   32   34   37   40   43   45   48   53   59 
LCS_GDT     L     132     L     132     12   13   27    11   12   12   12   12   12   13   18   21   23   23   26   27   35   36   41   45   49   53   59 
LCS_GDT     D     133     D     133     12   13   27    11   12   12   12   12   13   16   19   21   23   23   26   27   28   32   38   44   47   53   59 
LCS_GDT     Y     134     Y     134     12   13   27    11   12   12   12   12   12   13   14   17   20   21   24   26   30   32   35   38   46   53   59 
LCS_GDT     L     135     L     135     12   13   27    11   12   12   12   12   12   13   18   27   29   30   30   31   32   33   35   38   40   46   55 
LCS_GDT     N     136     N     136     12   13   27    11   12   12   12   12   13   17   21   24   24   26   28   30   32   32   35   38   40   44   49 
LCS_GDT     L     137     L     137     12   13   27    11   12   12   12   12   14   17   22   24   24   26   28   30   32   32   35   38   40   46   52 
LCS_GDT     L     138     L     138     12   13   24    11   12   12   12   12   12   13   25   26   29   30   30   31   32   33   35   37   40   43   48 
LCS_GDT     G     139     G     139     12   13   24    11   12   12   19   21   21   21   21   23   25   27   27   30   31   32   35   36   39   40   44 
LCS_GDT     Y     140     Y     140      3   13   24     3    4    4    5    6    9   11   14   15   17   19   23   23   27   28   29   32   36   40   44 
LCS_GDT     D     141     D     141      4    7   24     3    4    4    6    6    9   11   13   16   19   21   24   26   27   28   30   30   36   39   43 
LCS_GDT     I     142     I     142      4    7   24     4    4    4    6    6    8    8   13   16   19   21   24   26   27   28   30   30   33   37   41 
LCS_GDT     K     143     K     143      4    7   23     4    4    4    6    6    8   11   14   16   19   21   24   26   27   28   30   30   33   37   39 
LCS_GDT     L     144     L     144      4    7   14     4    4    4    6    6    8    8    9    9   10   11   13   14   24   28   29   30   31   34   36 
LCS_GDT     D     145     D     145      4    7   14     4    4    4    6    6    8    8    9    9   10   11   13   14   16   17   17   19   20   21   30 
LCS_GDT     L     146     L     146      3    7   14     3    3    3    5    6    8    8    9    9   10   11   12   12   16   17   17   19   20   21   22 
LCS_GDT     F     147     F     147      0    5   14     0    0    2    4    6    8    8    9    9   10   11   12   12   16   16   17   19   20   21   22 
LCS_AVERAGE  LCS_A:  15.34  (   9.72   13.02   23.27 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     18     19     24     26     27     28     30     31     33     36     38     41     45     48     52     54     56     62     64     67 
GDT PERCENT_CA  12.24  12.93  16.33  17.69  18.37  19.05  20.41  21.09  22.45  24.49  25.85  27.89  30.61  32.65  35.37  36.73  38.10  42.18  43.54  45.58
GDT RMS_LOCAL    0.30   0.33   0.91   1.02   1.15   1.36   2.58   2.11   2.74   3.07   6.05   3.75   4.13   4.50   4.80   4.92   5.38   5.95   6.13   6.38
GDT RMS_ALL_CA  22.82  22.86  23.97  24.11  24.05  23.70  25.09  23.61  24.48  24.57  24.61  23.76  23.75  23.65  23.75  23.78  23.82  23.81  23.78  23.88

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          2.973
LGA    T       2      T       2          1.950
LGA    D       3      D       3          2.435
LGA    W       4      W       4          2.421
LGA    Q       5      Q       5          1.622
LGA    Q       6      Q       6          0.885
LGA    A       7      A       7          1.602
LGA    L       8      L       8          1.270
LGA    D       9      D       9          1.111
LGA    R      10      R      10          1.337
LGA    H      11      H      11          0.870
LGA    V      12      V      12          0.794
LGA    G      13      G      13          1.346
LGA    V      14      V      14          1.364
LGA    G      15      G      15          0.473
LGA    V      16      V      16          1.958
LGA    R      17      R      17          2.374
LGA    T      18      T      18          0.807
LGA    T      19      T      19          1.749
LGA    R      20      R      20          3.346
LGA    D      21      D      21          2.441
LGA    L      22      L      22          0.621
LGA    I      23      I      23          3.095
LGA    R      24      R      24          3.703
LGA    L      25      L      25          1.404
LGA    I      26      I      26          2.456
LGA    Q      27      Q      27          4.602
LGA    P      28      P      28          2.903
LGA    E      29      E      29          5.557
LGA    D      30      D      30          3.098
LGA    W      31      W      31          5.474
LGA    D      32      D      32          3.993
LGA    K      33      K      33          7.696
LGA    R      34      R      34         10.057
LGA    P      35      P      35         16.872
LGA    I      36      I      36         17.581
LGA    S      37      S      37         19.407
LGA    G      38      G      38         15.163
LGA    K      39      K      39         11.211
LGA    R      40      R      40         11.018
LGA    S      41      S      41         13.700
LGA    V      42      V      42         13.442
LGA    Y      43      Y      43         10.234
LGA    E      44      E      44         10.383
LGA    V      45      V      45         12.639
LGA    A      46      A      46         12.322
LGA    V      47      V      47          9.811
LGA    H      48      H      48          9.922
LGA    L      49      L      49         13.072
LGA    A      50      A      50         13.383
LGA    V      51      V      51         10.528
LGA    L      52      L      52         10.835
LGA    L      53      L      53         12.026
LGA    E      54      E      54         11.762
LGA    A      55      A      55         11.203
LGA    D      56      D      56         10.366
LGA    L      57      L      57          9.263
LGA    R      58      R      58          7.455
LGA    I      59      I      59         11.152
LGA    A      60      A      60         10.685
LGA    T      61      T      61         10.738
LGA    G      62      G      62         12.814
LGA    A      63      A      63         10.663
LGA    T      64      T      64         13.149
LGA    A      65      A      65         17.463
LGA    D      66      D      66         15.237
LGA    E      67      E      67         11.381
LGA    M      68      M      68         15.568
LGA    A      69      A      69         20.008
LGA    Q      70      Q      70         17.812
LGA    F      71      F      71         15.986
LGA    Y      72      Y      72         21.414
LGA    A      73      A      73         25.144
LGA    V      74      V      74         23.905
LGA    P      75      P      75         28.984
LGA    V      76      V      76         27.305
LGA    L      77      L      77         31.948
LGA    P      78      P      78         30.201
LGA    E      79      E      79         33.567
LGA    Q      80      Q      80         31.061
LGA    L      81      L      81         24.652
LGA    V      82      V      82         25.100
LGA    D      83      D      83         28.841
LGA    R      84      R      84         23.593
LGA    L      85      L      85         19.257
LGA    D      86      D      86         24.632
LGA    Q      87      Q      87         26.538
LGA    S      88      S      88         20.970
LGA    W      89      W      89         22.385
LGA    Q      90      Q      90         29.121
LGA    Y      91      Y      91         28.335
LGA    Y      92      Y      92         25.981
LGA    Q      93      Q      93         30.668
LGA    D      94      D      94         35.942
LGA    R      95      R      95         34.598
LGA    L      96      L      96         34.899
LGA    M      97      M      97         40.848
LGA    A      98      A      98         44.060
LGA    D      99      D      99         44.278
LGA    F     100      F     100         41.874
LGA    S     101      S     101         45.162
LGA    T     102      T     102         44.061
LGA    E     103      E     103         43.441
LGA    T     104      T     104         43.484
LGA    T     105      T     105         37.018
LGA    Y     106      Y     106         34.891
LGA    W     107      W     107         30.952
LGA    G     108      G     108         32.182
LGA    V     109      V     109         28.324
LGA    T     110      T     110         29.279
LGA    D     111      D     111         25.179
LGA    S     112      S     112         26.324
LGA    T     113      T     113         22.817
LGA    T     114      T     114         19.978
LGA    G     115      G     115         16.984
LGA    W     116      W     116         14.903
LGA    L     117      L     117         10.759
LGA    L     118      L     118          8.325
LGA    E     119      E     119          6.053
LGA    A     120      A     120          6.135
LGA    A     121      A     121          1.264
LGA    V     122      V     122          3.921
LGA    H     123      H     123          8.181
LGA    L     124      L     124         10.608
LGA    Y     125      Y     125         12.985
LGA    H     126      H     126         15.129
LGA    H     127      H     127         19.433
LGA    R     128      R     128         21.927
LGA    S     129      S     129         25.614
LGA    Q     130      Q     130         29.955
LGA    L     131      L     131         28.265
LGA    L     132      L     132         28.540
LGA    D     133      D     133         34.165
LGA    Y     134      Y     134         36.191
LGA    L     135      L     135         34.458
LGA    N     136      N     136         38.114
LGA    L     137      L     137         42.912
LGA    L     138      L     138         42.847
LGA    G     139      G     139         43.384
LGA    Y     140      Y     140         44.689
LGA    D     141      D     141         46.743
LGA    I     142      I     142         42.767
LGA    K     143      K     143         46.420
LGA    L     144      L     144         44.922
LGA    D     145      D     145         47.569
LGA    L     146      L     146         46.622
LGA    F     147      F     147         48.762

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     31    2.11    22.109    19.824     1.401

LGA_LOCAL      RMSD =  2.112  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.757  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 20.662  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.292004 * X  +  -0.792196 * Y  +   0.535872 * Z  +   4.630201
  Y_new =  -0.384279 * X  +   0.415897 * Y  +   0.824232 * Z  +   3.135343
  Z_new =  -0.875821 * X  +  -0.446604 * Y  +  -0.182981 * Z  + -12.118526 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.959651    1.181941  [ DEG:  -112.2798     67.7202 ]
  Theta =   1.067135    2.074457  [ DEG:    61.1423    118.8577 ]
  Phi   =  -0.921006    2.220587  [ DEG:   -52.7698    127.2302 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_4                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_4.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   31   2.11  19.824    20.66
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_4
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      19.447  18.933  -2.753  1.00  0.00              
ATOM      2  CA  THR     2      18.882  18.486   1.385  1.00  0.00              
ATOM      3  CA  ASP     3      17.449  16.300   4.671  1.00  0.00              
ATOM      4  CA  TRP     4      13.859  15.883   2.995  1.00  0.00              
ATOM      5  CA  GLN     5      15.468  14.805  -0.292  1.00  0.00              
ATOM      6  CA  GLN     6      17.690  12.257   1.482  1.00  0.00              
ATOM      7  CA  ALA     7      14.776  10.744   3.435  1.00  0.00              
ATOM      8  CA  LEU     8      12.567  10.353   0.336  1.00  0.00              
ATOM      9  CA  ASP     9      15.309   8.653  -1.706  1.00  0.00              
ATOM     10  CA  ARG    10      15.954   6.271   1.188  1.00  0.00              
ATOM     11  CA  HIS    11      12.295   5.350   1.587  1.00  0.00              
ATOM     12  CA  VAL    12      11.808   4.675  -2.152  1.00  0.00              
ATOM     13  CA  GLY    13      14.791   2.334  -2.339  1.00  0.00              
ATOM     14  CA  VAL    14      13.798   0.206   0.685  1.00  0.00              
ATOM     15  CA  GLY    15      10.081  -0.164  -0.047  1.00  0.00              
ATOM     16  CA  VAL    16      10.573  -1.243  -3.675  1.00  0.00              
ATOM     17  CA  ARG    17      13.281  -3.823  -2.948  1.00  0.00              
ATOM     18  CA  THR    18      11.785  -5.712   0.041  1.00  0.00              
ATOM     19  CA  THR    19       8.431  -5.931  -1.666  1.00  0.00              
ATOM     20  CA  ARG    20       9.896  -7.303  -4.928  1.00  0.00              
ATOM     21  CA  ASP    21      11.930  -9.907  -3.073  1.00  0.00              
ATOM     22  CA  LEU    22       8.819 -11.056  -1.126  1.00  0.00              
ATOM     23  CA  ILE    23       6.863 -11.225  -4.337  1.00  0.00              
ATOM     24  CA  ARG    24       9.605 -13.301  -6.037  1.00  0.00              
ATOM     25  CA  LEU    25       9.770 -15.703  -3.128  1.00  0.00              
ATOM     26  CA  ILE    26       5.973 -16.150  -3.048  1.00  0.00              
ATOM     27  CA  GLN    27       5.567 -16.557  -6.790  1.00  0.00              
ATOM     28  CA  PRO    28       8.224 -19.125  -7.774  1.00  0.00              
ATOM     29  CA  GLU    29       7.486 -21.196  -4.697  1.00  0.00              
ATOM     30  CA  ASP    30       3.768 -21.304  -5.126  1.00  0.00              
ATOM     31  CA  TRP    31       3.643 -22.539  -8.786  1.00  0.00              
ATOM     32  CA  ASP    32       0.891 -21.570 -11.166  1.00  0.00              
ATOM     33  CA  LYS    33       1.748 -21.121 -14.890  1.00  0.00              
ATOM     34  CA  ARG    34       0.168 -18.262 -16.761  1.00  0.00              
ATOM     35  CA  PRO    35       1.129 -16.971 -20.167  1.00  0.00              
ATOM     36  CA  ILE    36       1.998 -13.373 -19.601  1.00  0.00              
ATOM     37  CA  SER    37       2.021 -11.129 -22.612  1.00  0.00              
ATOM     38  CA  GLY    38      -0.939  -8.953 -21.842  1.00  0.00              
ATOM     39  CA  LYS    39       0.117  -8.849 -18.193  1.00  0.00              
ATOM     40  CA  ARG    40       3.444  -7.261 -19.123  1.00  0.00              
ATOM     41  CA  SER    41       1.519  -4.598 -21.103  1.00  0.00              
ATOM     42  CA  VAL    42      -0.815  -3.871 -18.169  1.00  0.00              
ATOM     43  CA  TYR    43       2.016  -3.467 -15.634  1.00  0.00              
ATOM     44  CA  GLU    44       3.741  -1.087 -18.026  1.00  0.00              
ATOM     45  CA  VAL    45       0.658   1.035 -18.571  1.00  0.00              
ATOM     46  CA  ALA    46       0.055   1.300 -14.785  1.00  0.00              
ATOM     47  CA  VAL    47       3.651   2.217 -13.941  1.00  0.00              
ATOM     48  CA  HIS    48       3.718   4.878 -16.710  1.00  0.00              
ATOM     49  CA  LEU    49       0.475   6.430 -15.650  1.00  0.00              
ATOM     50  CA  ALA    50       1.473   6.694 -11.973  1.00  0.00              
ATOM     51  CA  VAL    51       4.751   8.334 -13.060  1.00  0.00              
ATOM     52  CA  LEU    52       3.172  10.924 -15.375  1.00  0.00              
ATOM     53  CA  LEU    53       0.730  11.916 -12.657  1.00  0.00              
ATOM     54  CA  GLU    54       2.966  12.104  -9.579  1.00  0.00              
ATOM     55  CA  ALA    55       5.491  14.100 -11.609  1.00  0.00              
ATOM     56  CA  ASP    56       3.286  16.654 -13.324  1.00  0.00              
ATOM     57  CA  LEU    57       5.597  17.587 -16.133  1.00  0.00              
ATOM     58  CA  ARG    58       8.653  15.720 -17.474  1.00  0.00              
ATOM     59  CA  ILE    59      11.041  17.662 -19.768  1.00  0.00              
ATOM     60  CA  ALA    60      13.509  15.590 -21.711  1.00  0.00              
ATOM     61  CA  THR    61      16.480  17.130 -23.395  1.00  0.00              
ATOM     62  CA  GLY    62      16.439  15.562 -26.813  1.00  0.00              
ATOM     63  CA  ALA    63      12.694  15.579 -27.433  1.00  0.00              
ATOM     64  CA  THR    64      11.125  17.386 -30.413  1.00  0.00              
ATOM     65  CA  ALA    65       9.020  20.425 -29.548  1.00  0.00              
ATOM     66  CA  ASP    66       5.587  18.825 -30.019  1.00  0.00              
ATOM     67  CA  GLU    67       6.553  15.875 -27.871  1.00  0.00              
ATOM     68  CA  MET    68       7.838  18.168 -25.193  1.00  0.00              
ATOM     69  CA  ALA    69       4.741  20.302 -25.078  1.00  0.00              
ATOM     70  CA  GLN    70       2.561  17.227 -24.770  1.00  0.00              
ATOM     71  CA  PHE    71       4.645  15.765 -21.955  1.00  0.00              
ATOM     72  CA  TYR    72       4.554  19.083 -20.029  1.00  0.00              
ATOM     73  CA  ALA    73       0.825  19.816 -20.532  1.00  0.00              
ATOM     74  CA  VAL    74      -0.262  16.390 -19.442  1.00  0.00              
ATOM     75  CA  PRO    75      -3.348  17.279 -17.321  1.00  0.00              
ATOM     76  CA  VAL    76      -4.482  13.892 -16.229  1.00  0.00              
ATOM     77  CA  LEU    77      -5.701  14.235 -12.670  1.00  0.00              
ATOM     78  CA  PRO    78      -4.691  11.736  -9.927  1.00  0.00              
ATOM     79  CA  GLU    79      -8.134  10.264  -9.647  1.00  0.00              
ATOM     80  CA  GLN    80      -8.437   9.762 -13.438  1.00  0.00              
ATOM     81  CA  LEU    81      -5.026   8.124 -13.640  1.00  0.00              
ATOM     82  CA  VAL    82      -5.918   5.738 -10.755  1.00  0.00              
ATOM     83  CA  ASP    83      -9.147   4.888 -12.471  1.00  0.00              
ATOM     84  CA  ARG    84      -7.462   4.117 -15.829  1.00  0.00              
ATOM     85  CA  LEU    85      -4.861   1.903 -14.138  1.00  0.00              
ATOM     86  CA  ASP    86      -7.567  -0.001 -12.250  1.00  0.00              
ATOM     87  CA  GLN    87      -9.650  -0.544 -15.433  1.00  0.00              
ATOM     88  CA  SER    88      -6.613  -1.863 -17.287  1.00  0.00              
ATOM     89  CA  TRP    89      -5.795  -4.263 -14.411  1.00  0.00              
ATOM     90  CA  GLN    90      -9.355  -5.603 -14.231  1.00  0.00              
ATOM     91  CA  TYR    91      -9.371  -6.357 -17.989  1.00  0.00              
ATOM     92  CA  TYR    92      -5.974  -8.061 -17.750  1.00  0.00              
ATOM     93  CA  GLN    93      -6.938 -10.193 -14.767  1.00  0.00              
ATOM     94  CA  ASP    94     -10.120 -11.526 -16.430  1.00  0.00              
ATOM     95  CA  ARG    95      -8.290 -12.446 -19.649  1.00  0.00              
ATOM     96  CA  LEU    96      -5.567 -14.260 -17.800  1.00  0.00              
ATOM     97  CA  MET    97      -8.028 -16.243 -15.717  1.00  0.00              
ATOM     98  CA  ALA    98      -9.993 -17.297 -18.825  1.00  0.00              
ATOM     99  CA  ASP    99      -6.909 -18.437 -20.759  1.00  0.00              
ATOM    100  CA  PHE   100      -5.544 -20.205 -17.667  1.00  0.00              
ATOM    101  CA  SER   101      -8.830 -22.137 -17.147  1.00  0.00              
ATOM    102  CA  THR   102      -9.170 -23.445 -20.709  1.00  0.00              
ATOM    103  CA  GLU   103      -5.561 -24.638 -20.526  1.00  0.00              
ATOM    104  CA  THR   104      -5.193 -26.046 -16.998  1.00  0.00              
ATOM    105  CA  THR   105      -2.782 -23.445 -15.633  1.00  0.00              
ATOM    106  CA  TYR   106      -3.928 -21.478 -12.623  1.00  0.00              
ATOM    107  CA  TRP   107      -1.859 -18.439 -11.877  1.00  0.00              
ATOM    108  CA  GLY   108      -3.005 -16.072  -9.180  1.00  0.00              
ATOM    109  CA  VAL   109      -0.492 -13.242  -9.730  1.00  0.00              
ATOM    110  CA  THR   110      -0.913 -10.954  -6.788  1.00  0.00              
ATOM    111  CA  ASP   111       0.703  -7.510  -7.411  1.00  0.00              
ATOM    112  CA  SER   112       2.412  -6.688  -4.147  1.00  0.00              
ATOM    113  CA  THR   113       5.688  -5.212  -5.405  1.00  0.00              
ATOM    114  CA  THR   114       4.239  -2.996  -8.152  1.00  0.00              
ATOM    115  CA  GLY   115       1.548  -1.403  -5.939  1.00  0.00              
ATOM    116  CA  TRP   116       3.965  -0.799  -3.132  1.00  0.00              
ATOM    117  CA  LEU   117       6.497   1.004  -5.268  1.00  0.00              
ATOM    118  CA  LEU   118       3.923   3.362  -6.801  1.00  0.00              
ATOM    119  CA  GLU   119       2.306   4.279  -3.450  1.00  0.00              
ATOM    120  CA  ALA   120       5.616   4.952  -1.766  1.00  0.00              
ATOM    121  CA  ALA   121       6.695   7.162  -4.660  1.00  0.00              
ATOM    122  CA  VAL   122       3.474   9.110  -4.359  1.00  0.00              
ATOM    123  CA  HIS   123       3.807   9.627  -0.606  1.00  0.00              
ATOM    124  CA  LEU   124       7.480  10.758  -0.917  1.00  0.00              
ATOM    125  CA  TYR   125       6.901  13.156  -3.747  1.00  0.00              
ATOM    126  CA  HIS   126       4.034  14.807  -1.936  1.00  0.00              
ATOM    127  CA  HIS   127       5.185  15.198   1.620  1.00  0.00              
ATOM    128  CA  ARG   128       8.295  17.090   1.508  1.00  0.00              
ATOM    129  CA  SER   129       7.213  20.404  -0.104  1.00  0.00              
ATOM    130  CA  GLN   130      10.884  21.168  -0.810  1.00  0.00              
ATOM    131  CA  LEU   131      11.594  17.796  -2.478  1.00  0.00              
ATOM    132  CA  LEU   132       8.564  18.039  -4.832  1.00  0.00              
ATOM    133  CA  ASP   133       9.555  21.587  -5.844  1.00  0.00              
ATOM    134  CA  TYR   134      13.102  20.401  -6.572  1.00  0.00              
ATOM    135  CA  LEU   135      11.806  17.510  -8.658  1.00  0.00              
ATOM    136  CA  ASN   136       9.516  19.848 -10.626  1.00  0.00              
ATOM    137  CA  LEU   137      12.338  22.245 -11.308  1.00  0.00              
ATOM    138  CA  LEU   138      14.601  19.416 -12.536  1.00  0.00              
ATOM    139  CA  GLY   139      11.843  18.118 -14.815  1.00  0.00              
ATOM    140  CA  TYR   140      11.069  21.524 -16.341  1.00  0.00              
ATOM    141  CA  ASP   141      14.744  22.141 -17.178  1.00  0.00              
ATOM    142  CA  ILE   142      15.919  19.330 -19.459  1.00  0.00              
ATOM    143  CA  LYS   143      18.458  21.240 -21.500  1.00  0.00              
ATOM    144  CA  LEU   144      17.600  20.952 -25.158  1.00  0.00              
ATOM    145  CA  ASP   145      17.979  24.168 -27.227  1.00  0.00              
ATOM    146  CA  LEU   146      19.541  22.414 -30.601  1.00  0.00              
ATOM    147  CA  PHE   147      20.971  20.885 -34.085  1.00  0.00              
ATOM    148  CA  GLU   148      21.005  21.029 -29.887  1.00  0.00              
TER                                                                             
END
