
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  147 , name T0369TS599_5
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_5.T0369.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41         1 - 41          4.74    28.00
  LONGEST_CONTINUOUS_SEGMENT:    41         2 - 42          5.00    27.97
  LCS_AVERAGE:     23.19

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27         1 - 27          1.74    24.16
  LONGEST_CONTINUOUS_SEGMENT:    27         2 - 28          1.85    23.79
  LCS_AVERAGE:     12.78

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.99    24.10
  LONGEST_CONTINUOUS_SEGMENT:    24         3 - 26          0.96    24.24
  LCS_AVERAGE:      9.41

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3   27   41     0    3    3    3    4    7   19   23   29   32   34   36   36   39   41   43   44   46   48   50 
LCS_GDT     T       2     T       2     24   27   41    10   14   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     D       3     D       3     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     W       4     W       4     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     Q       5     Q       5     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     Q       6     Q       6     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     A       7     A       7     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   52 
LCS_GDT     L       8     L       8     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   49   52 
LCS_GDT     D       9     D       9     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   47   50   52 
LCS_GDT     R      10     R      10     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   47   50   52 
LCS_GDT     H      11     H      11     24   27   41    10   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   47   51   55 
LCS_GDT     V      12     V      12     24   27   41     7   14   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   47   51   55 
LCS_GDT     G      13     G      13     24   27   41     9   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   47   50   53 
LCS_GDT     V      14     V      14     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   47   50   53 
LCS_GDT     G      15     G      15     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   48   52   55 
LCS_GDT     V      16     V      16     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   47   49   53 
LCS_GDT     R      17     R      17     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   52 
LCS_GDT     T      18     T      18     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     T      19     T      19     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     R      20     R      20     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     D      21     D      21     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     L      22     L      22     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     I      23     I      23     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     R      24     R      24     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     L      25     L      25     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     I      26     I      26     24   27   41    13   17   23   25   26   27   27   29   30   34   35   37   38   39   41   43   44   46   47   50 
LCS_GDT     Q      27     Q      27      5   27   41     5    5    5    5   11   27   27   29   30   34   35   37   38   39   41   43   44   46   48   50 
LCS_GDT     P      28     P      28      5   27   41     5    5    5    5    7   13   25   29   30   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     E      29     E      29      5    6   41     5    5    5    5    5    8   11   18   29   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     D      30     D      30      5    6   41     5    5    6   10   16   22   25   29   30   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     W      31     W      31      5    6   41     5    5    5    5    6    9   13   26   30   33   35   37   38   39   41   43   44   44   46   48 
LCS_GDT     D      32     D      32      4    7   41     3    4    5    8   13   19   23   26   30   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     K      33     K      33      4    7   41     3    4    5    6    9   11   18   25   30   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     R      34     R      34      4    7   41     3    4    5    6    9   11   18   25   30   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     P      35     P      35      4    7   41     3    4    5    6    6    7    8   10   17   28   35   35   36   36   39   41   44   44   44   47 
LCS_GDT     I      36     I      36      4    7   41     4    4    4    5    6   10   12   22   30   33   35   37   38   39   41   43   44   44   46   47 
LCS_GDT     S      37     S      37      4    7   41     4    4    4    9   11   15   18   19   21   23   33   37   38   39   41   43   44   44   46   47 
LCS_GDT     G      38     G      38      4    7   41     4    4    5    6    6    7    8   17   29   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     K      39     K      39      4    6   41     4    4    4    5    6    7    7   11   23   34   35   37   38   39   41   43   44   45   47   48 
LCS_GDT     R      40     R      40      3   14   41     1    3    3    5    7   13   17   23   29   31   34   36   38   39   41   43   44   45   47   48 
LCS_GDT     S      41     S      41     13   19   41    12   12   14   14   16   16   18   19   21   22   23   26   27   32   37   41   42   45   47   49 
LCS_GDT     V      42     V      42     13   19   41    12   12   14   14   16   16   18   19   21   22   23   26   27   29   32   36   42   46   48   50 
LCS_GDT     Y      43     Y      43     13   19   30    12   12   14   14   16   16   18   19   21   22   23   26   27   29   33   39   43   46   48   50 
LCS_GDT     E      44     E      44     13   19   30    12   12   14   14   16   16   18   19   21   22   23   26   38   41   45   47   51   51   53   57 
LCS_GDT     V      45     V      45     13   19   30    12   12   14   14   16   16   18   19   21   22   23   26   38   41   45   47   51   51   53   57 
LCS_GDT     A      46     A      46     13   19   30    12   12   14   14   16   16   18   19   21   22   23   30   38   41   45   47   51   51   53   57 
LCS_GDT     V      47     V      47     13   19   30    12   12   14   14   16   16   18   19   21   23   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     H      48     H      48     13   19   30    12   12   14   14   16   24   26   28   31   31   32   33   38   41   45   47   51   51   53   57 
LCS_GDT     L      49     L      49     13   19   37    12   14   20   21   24   26   27   28   31   31   32   33   38   41   45   47   51   51   53   57 
LCS_GDT     A      50     A      50     13   19   38    12   12   14   14   22   26   27   28   31   31   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     V      51     V      51     13   19   38    12   12   14   14   16   16   18   19   23   29   31   37   37   40   42   44   47   49   53   57 
LCS_GDT     L      52     L      52     13   19   38    12   12   14   14   16   19   21   24   27   30   33   37   37   40   42   44   47   49   52   54 
LCS_GDT     L      53     L      53     13   19   38     4    6   14   14   16   16   18   19   21   26   33   37   37   39   42   44   47   49   52   54 
LCS_GDT     E      54     E      54      6   19   38     4    6    6   12   16   16   18   19   21   22   23   26   29   32   41   42   46   49   52   54 
LCS_GDT     A      55     A      55      6   19   38     4    6    6   12   16   16   18   19   21   26   33   37   37   39   41   44   47   49   52   54 
LCS_GDT     D      56     D      56      6   19   38     4    6    6    9   12   16   17   19   19   20   22   23   29   31   36   39   44   47   51   54 
LCS_GDT     L      57     L      57      4   19   38     4   12   14   14   16   16   18   19   21   22   23   26   27   31   36   39   42   45   48   50 
LCS_GDT     R      58     R      58      4   19   38     1    4   14   14   15   16   18   23   26   30   33   37   37   39   41   43   45   48   51   54 
LCS_GDT     I      59     I      59      3   19   38     2    3    3    5   10   18   23   24   27   30   33   37   37   39   41   43   45   48   51   54 
LCS_GDT     A      60     A      60      3   18   38     3    3    3    5   14   16   23   24   27   30   32   37   37   39   40   43   45   47   50   52 
LCS_GDT     T      61     T      61      4   19   38     3    3    5    6   13   15   17   22   25   26   27   32   36   38   39   41   42   46   49   52 
LCS_GDT     G      62     G      62     14   20   38     4   11   14   16   18   21   23   24   27   30   32   37   37   39   40   43   45   47   50   52 
LCS_GDT     A      63     A      63     14   20   38     8   12   14   16   18   21   23   24   27   30   33   37   37   39   41   43   45   48   51   52 
LCS_GDT     T      64     T      64     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   39   41   43   45   48   51   54 
LCS_GDT     A      65     A      65     14   20   38    10   12   14   16   18   19   23   24   27   30   33   37   37   39   41   43   45   48   51   54 
LCS_GDT     D      66     D      66     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   39   41   44   46   49   52   54 
LCS_GDT     E      67     E      67     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   39   42   44   47   49   52   54 
LCS_GDT     M      68     M      68     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   39   41   43   46   49   51   54 
LCS_GDT     A      69     A      69     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   39   42   44   47   49   52   54 
LCS_GDT     Q      70     Q      70     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   40   42   44   47   49   52   54 
LCS_GDT     F      71     F      71     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   40   42   44   47   49   52   54 
LCS_GDT     Y      72     Y      72     14   20   38    10   12   14   16   18   21   23   24   27   30   33   37   37   40   42   44   47   49   52   54 
LCS_GDT     A      73     A      73     14   20   38    10   12   13   16   18   21   23   24   27   30   33   37   37   40   42   44   47   49   52   54 
LCS_GDT     V      74     V      74     14   20   38     6   12   14   16   18   21   23   24   27   30   33   37   37   40   42   44   47   49   52   54 
LCS_GDT     P      75     P      75     14   25   38     7   10   14   16   18   21   23   26   27   30   33   37   37   40   42   44   47   49   52   54 
LCS_GDT     V      76     V      76      9   25   38     7    8   11   16   20   26   27   28   31   31   33   37   37   40   42   44   47   49   52   55 
LCS_GDT     L      77     L      77      9   25   38     7    8   14   20   24   26   27   28   31   31   33   37   37   40   42   44   47   49   52   55 
LCS_GDT     P      78     P      78      9   25   38     7    8   13   20   24   26   27   28   31   31   33   37   37   40   42   44   47   49   52   55 
LCS_GDT     E      79     E      79     21   25   38     7    8   12   21   24   26   27   28   31   31   33   37   37   40   42   44   47   49   52   55 
LCS_GDT     Q      80     Q      80     21   25   38    18   19   20   21   24   26   27   28   31   31   33   37   37   40   42   44   47   49   52   57 
LCS_GDT     L      81     L      81     21   25   38    18   19   20   21   24   26   27   28   31   31   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     V      82     V      82     21   25   38    18   19   20   21   24   26   27   28   31   31   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     D      83     D      83     21   25   38    18   19   20   21   24   26   27   28   31   31   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     R      84     R      84     21   25   38    18   19   20   21   24   26   27   28   31   31   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     L      85     L      85     21   25   38    18   19   20   21   24   26   27   28   31   31   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     D      86     D      86     21   25   38    18   19   20   21   24   26   27   28   31   31   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     Q      87     Q      87     21   25   38    18   19   20   21   24   26   27   28   31   31   32   34   38   41   45   47   51   51   53   57 
LCS_GDT     S      88     S      88     21   25   34    18   19   20   21   24   26   27   28   31   31   32   34   38   41   45   47   51   51   53   57 
LCS_GDT     W      89     W      89     21   25   32    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   47   51   51   53   57 
LCS_GDT     Q      90     Q      90     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   51   51   53   57 
LCS_GDT     Y      91     Y      91     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   47   51   51   53   57 
LCS_GDT     Y      92     Y      92     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   53   57 
LCS_GDT     Q      93     Q      93     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   53   57 
LCS_GDT     D      94     D      94     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   53   57 
LCS_GDT     R      95     R      95     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   53   57 
LCS_GDT     L      96     L      96     21   25   31     4   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   52   54 
LCS_GDT     M      97     M      97     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   52   54 
LCS_GDT     A      98     A      98     21   25   31    18   19   20   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   53   55 
LCS_GDT     D      99     D      99     21   25   31     3   18   19   21   24   26   27   28   31   31   32   34   37   40   42   44   47   49   52   54 
LCS_GDT     F     100     F     100      3   23   31     3    3    3   13   14   18   22   26   28   31   32   33   36   39   41   43   47   49   53   56 
LCS_GDT     S     101     S     101      3    3   30     0    3    3    4   12   12   16   20   20   24   26   28   33   38   40   43   47   49   53   57 
LCS_GDT     T     102     T     102      4    4   30     0    4    4    5    6    7    8    9   12   15   23   26   30   33   34   39   43   48   53   57 
LCS_GDT     E     103     E     103      4    5   30     3    4    4    5    6    7    8    9   12   20   23   26   30   33   37   42   46   49   53   57 
LCS_GDT     T     104     T     104      4    5   28     3    4    4    5    6    7    8    8    9   12   15   19   22   27   34   38   45   48   53   57 
LCS_GDT     T     105     T     105      4    5   18     3    4    4    5    6    7    8    8   10   11   15   18   27   30   36   42   47   51   53   57 
LCS_GDT     Y     106     Y     106      4    7   20     3    3    4    6    7   10   10   11   13   15   25   30   38   41   45   47   51   51   53   55 
LCS_GDT     W     107     W     107      5    7   20     3    4    6    7    8   10   10   11   13   19   25   30   38   41   45   47   51   51   53   55 
LCS_GDT     G     108     G     108      5    7   20     3    4    6    7    8   10   10   11   14   19   25   30   38   41   45   47   51   51   53   55 
LCS_GDT     V     109     V     109      5    7   26     3    4    6    7    8   10   10   11   16   20   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     T     110     T     110      5    7   28     3    4    6    7    8   10   10   13   17   20   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     D     111     D     111      5   19   28     3    4    5    7    9   14   15   18   21   23   25   29   38   41   45   47   51   51   53   57 
LCS_GDT     S     112     S     112     17   19   28     7   15   16   16   17   19   19   19   21   24   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     T     113     T     113     17   19   28    10   15   16   16   17   19   19   19   21   24   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     T     114     T     114     17   19   28    10   15   16   16   17   19   19   19   21   24   26   29   33   38   40   44   51   51   53   57 
LCS_GDT     G     115     G     115     17   19   28    10   15   16   16   17   19   19   19   21   24   25   29   34   40   45   47   51   51   53   57 
LCS_GDT     W     116     W     116     17   19   28    10   15   16   16   17   19   19   19   21   24   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     L     117     L     117     17   19   28    10   15   16   16   17   19   19   19   21   24   26   29   33   41   45   47   51   51   53   57 
LCS_GDT     L     118     L     118     17   19   28    10   15   16   16   17   19   19   19   21   24   25   29   34   39   45   47   51   51   53   57 
LCS_GDT     E     119     E     119     17   19   28    10   15   16   16   17   19   19   19   21   24   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     A     120     A     120     17   19   28    10   15   16   16   17   19   19   19   21   24   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     A     121     A     121     17   19   28    10   15   16   16   17   19   23   27   30   32   34   36   38   41   45   47   51   51   53   57 
LCS_GDT     V     122     V     122     17   19   28    10   15   16   16   17   22   25   28   30   32   34   36   38   41   45   47   51   51   53   57 
LCS_GDT     H     123     H     123     17   19   28    10   15   16   25   26   27   27   29   30   31   34   36   36   41   45   47   51   51   53   57 
LCS_GDT     L     124     L     124     17   19   28    10   15   16   16   17   19   19   22   27   29   32   36   38   41   45   47   51   51   53   57 
LCS_GDT     Y     125     Y     125     17   19   28     9   15   16   16   17   19   19   19   28   29   33   37   38   41   45   47   51   51   53   57 
LCS_GDT     H     126     H     126     17   19   28     9   15   16   16   17   19   19   19   21   24   25   29   37   40   45   47   51   51   53   57 
LCS_GDT     H     127     H     127     17   19   28    10   15   16   16   17   19   19   19   21   24   29   34   37   40   42   44   47   51   53   57 
LCS_GDT     R     128     R     128     17   19   28    12   12   12   16   17   19   19   19   25   30   33   37   37   40   42   44   51   51   53   57 
LCS_GDT     S     129     S     129     12   19   28    12   12   12   12   13   21   23   24   27   30   33   37   37   40   45   47   51   51   53   57 
LCS_GDT     Q     130     Q     130     12   19   28    12   12   12   13   16   19   21   24   28   29   32   37   37   40   42   44   51   51   53   57 
LCS_GDT     L     131     L     131     12   13   28    12   12   12   12   16   26   27   28   31   31   32   34   37   41   45   47   51   51   53   57 
LCS_GDT     L     132     L     132     12   13   28    12   12   18   20   23   23   27   28   31   31   32   34   38   41   45   47   51   51   53   57 
LCS_GDT     D     133     D     133     12   13   28    12   12   15   19   23   23   25   28   31   31   32   33   38   41   45   47   51   51   53   57 
LCS_GDT     Y     134     Y     134     12   13   28    12   12   12   21   24   26   27   28   31   31   32   33   38   41   45   47   51   51   53   57 
LCS_GDT     L     135     L     135     12   13   28    12   12   12   12   12   12   12   19   28   29   31   33   38   41   45   47   51   51   53   57 
LCS_GDT     N     136     N     136     12   13   28    12   12   12   12   12   12   12   17   22   24   29   32   38   41   45   47   51   51   53   57 
LCS_GDT     L     137     L     137     12   13   28    12   12   12   12   12   12   12   22   26   29   31   33   38   41   45   47   51   51   53   57 
LCS_GDT     L     138     L     138     12   13   28    12   12   12   12   12   12   12   14   14   18   25   30   38   41   45   47   51   51   53   57 
LCS_GDT     G     139     G     139     12   13   27    12   12   12   12   12   12   12   14   14   15   16   18   20   21   29   30   39   45   50   54 
LCS_GDT     Y     140     Y     140      3   13   27     3    4    4    5    7    9   12   14   18   23   25   29   38   41   45   47   51   51   53   56 
LCS_GDT     D     141     D     141      4    7   27     3    4    4    5    7   10   15   18   21   24   25   28   28   32   34   40   43   45   49   51 
LCS_GDT     I     142     I     142      4    7   27     4    4    6    7    8   10   13   18   21   24   25   28   28   30   32   35   37   39   43   49 
LCS_GDT     K     143     K     143      4    7   24     4    4    4    5    6    7   14   19   22   24   25   28   28   30   32   33   36   39   42   43 
LCS_GDT     L     144     L     144      4    7   14     4    4    4    5    6    7    8    9   10   11   13   26   26   30   32   33   36   39   42   43 
LCS_GDT     D     145     D     145      4    7   14     4    4    4    5    6    7    8    9   10   11   12   15   18   19   19   21   23   27   29   33 
LCS_GDT     L     146     L     146      3    7   14     3    3    4    5    6    7    8    9    9   11   12   14   18   19   19   20   20   22   25   27 
LCS_GDT     F     147     F     147      3    3   14     3    3    3    3    4    4    4    5    9   11   12   14   18   19   19   20   20   23   25   27 
LCS_AVERAGE  LCS_A:  15.13  (   9.41   12.78   23.19 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     18     19     23     25     26     27     27     29     31     34     35     37     38     41     45     47     51     51     53     57 
GDT PERCENT_CA  12.24  12.93  15.65  17.01  17.69  18.37  18.37  19.73  21.09  23.13  23.81  25.17  25.85  27.89  30.61  31.97  34.69  34.69  36.05  38.78
GDT RMS_LOCAL    0.28   0.38   0.92   1.03   1.19   1.38   1.38   2.15   2.21   3.58   3.62   4.02   4.06   5.24   5.50   5.70   5.99   5.99   6.15   6.98
GDT RMS_ALL_CA  22.02  22.10  24.22  24.13  23.80  23.75  23.75  23.76  21.72  27.38  27.42  28.35  27.69  22.28  22.33  22.39  22.40  22.40  22.40  22.39

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.335
LGA    T       2      T       2          2.184
LGA    D       3      D       3          3.199
LGA    W       4      W       4          2.865
LGA    Q       5      Q       5          1.027
LGA    Q       6      Q       6          1.449
LGA    A       7      A       7          1.993
LGA    L       8      L       8          1.457
LGA    D       9      D       9          1.672
LGA    R      10      R      10          1.722
LGA    H      11      H      11          0.526
LGA    V      12      V      12          1.169
LGA    G      13      G      13          1.810
LGA    V      14      V      14          0.856
LGA    G      15      G      15          1.569
LGA    V      16      V      16          2.739
LGA    R      17      R      17          2.350
LGA    T      18      T      18          0.640
LGA    T      19      T      19          2.472
LGA    R      20      R      20          3.498
LGA    D      21      D      21          2.046
LGA    L      22      L      22          1.145
LGA    I      23      I      23          2.978
LGA    R      24      R      24          3.048
LGA    L      25      L      25          0.979
LGA    I      26      I      26          1.745
LGA    Q      27      Q      27          3.838
LGA    P      28      P      28          3.997
LGA    E      29      E      29          5.667
LGA    D      30      D      30          3.845
LGA    W      31      W      31          6.750
LGA    D      32      D      32          7.645
LGA    K      33      K      33         13.673
LGA    R      34      R      34         16.658
LGA    P      35      P      35         22.260
LGA    I      36      I      36         21.909
LGA    S      37      S      37         23.590
LGA    G      38      G      38         18.642
LGA    K      39      K      39         14.563
LGA    R      40      R      40         14.267
LGA    S      41      S      41         15.731
LGA    V      42      V      42         14.036
LGA    Y      43      Y      43         12.745
LGA    E      44      E      44         13.286
LGA    V      45      V      45         13.910
LGA    A      46      A      46         13.785
LGA    V      47      V      47         13.110
LGA    H      48      H      48         12.805
LGA    L      49      L      49         15.332
LGA    A      50      A      50         16.343
LGA    V      51      V      51         14.702
LGA    L      52      L      52         14.557
LGA    L      53      L      53         16.379
LGA    E      54      E      54         16.205
LGA    A      55      A      55         15.679
LGA    D      56      D      56         15.287
LGA    L      57      L      57         16.590
LGA    R      58      R      58         14.935
LGA    I      59      I      59         16.093
LGA    A      60      A      60         15.340
LGA    T      61      T      61         16.426
LGA    G      62      G      62         16.926
LGA    A      63      A      63         18.929
LGA    T      64      T      64         20.983
LGA    A      65      A      65         24.448
LGA    D      66      D      66         25.403
LGA    E      67      E      67         22.856
LGA    M      68      M      68         24.297
LGA    A      69      A      69         28.202
LGA    Q      70      Q      70         27.583
LGA    F      71      F      71         25.094
LGA    Y      72      Y      72         28.358
LGA    A      73      A      73         32.041
LGA    V      74      V      74         31.163
LGA    P      75      P      75         34.451
LGA    V      76      V      76         31.779
LGA    L      77      L      77         35.637
LGA    P      78      P      78         33.262
LGA    E      79      E      79         35.412
LGA    Q      80      Q      80         33.435
LGA    L      81      L      81         27.478
LGA    V      82      V      82         26.404
LGA    D      83      D      83         29.346
LGA    R      84      R      84         24.871
LGA    L      85      L      85         19.801
LGA    D      86      D      86         23.244
LGA    Q      87      Q      87         25.103
LGA    S      88      S      88         19.124
LGA    W      89      W      89         18.942
LGA    Q      90      Q      90         25.104
LGA    Y      91      Y      91         24.347
LGA    Y      92      Y      92         21.197
LGA    Q      93      Q      93         25.234
LGA    D      94      D      94         30.534
LGA    R      95      R      95         29.251
LGA    L      96      L      96         29.079
LGA    M      97      M      97         34.294
LGA    A      98      A      98         37.807
LGA    D      99      D      99         37.765
LGA    F     100      F     100         34.862
LGA    S     101      S     101         38.691
LGA    T     102      T     102         37.615
LGA    E     103      E     103         36.601
LGA    T     104      T     104         38.806
LGA    T     105      T     105         33.847
LGA    Y     106      Y     106         33.112
LGA    W     107      W     107         30.805
LGA    G     108      G     108         34.874
LGA    V     109      V     109         30.370
LGA    T     110      T     110         32.911
LGA    D     111      D     111         30.155
LGA    S     112      S     112         30.672
LGA    T     113      T     113         27.749
LGA    T     114      T     114         25.325
LGA    G     115      G     115         21.817
LGA    W     116      W     116         18.830
LGA    L     117      L     117         15.691
LGA    L     118      L     118         13.737
LGA    E     119      E     119          9.798
LGA    A     120      A     120          7.455
LGA    A     121      A     121          4.743
LGA    V     122      V     122          4.311
LGA    H     123      H     123          3.416
LGA    L     124      L     124          5.561
LGA    Y     125      Y     125          9.623
LGA    H     126      H     126         11.190
LGA    H     127      H     127         14.782
LGA    R     128      R     128         17.425
LGA    S     129      S     129         22.133
LGA    Q     130      Q     130         25.327
LGA    L     131      L     131         23.451
LGA    L     132      L     132         25.775
LGA    D     133      D     133         31.061
LGA    Y     134      Y     134         31.972
LGA    L     135      L     135         31.614
LGA    N     136      N     136         36.229
LGA    L     137      L     137         39.962
LGA    L     138      L     138         39.709
LGA    G     139      G     139         42.095
LGA    Y     140      Y     140         44.091
LGA    D     141      D     141         45.617
LGA    I     142      I     142         42.521
LGA    K     143      K     143         46.989
LGA    L     144      L     144         45.996
LGA    D     145      D     145         48.821
LGA    L     146      L     146         47.572
LGA    F     147      F     147         46.002

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  147    4.0     29    2.15    20.408    18.485     1.290

LGA_LOCAL      RMSD =  2.148  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.012  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 20.815  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.483914 * X  +  -0.070701 * Y  +   0.872255 * Z  +   3.015173
  Y_new =   0.334212 * X  +  -0.936111 * Y  +   0.109539 * Z  +   4.072688
  Z_new =   0.808783 * X  +   0.344525 * Y  +   0.476626 * Z  + -12.818313 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.625891   -2.515701  [ DEG:    35.8609   -144.1391 ]
  Theta =  -0.942080   -2.199513  [ DEG:   -53.9772   -126.0228 ]
  Phi   =   2.537174   -0.604418  [ DEG:   145.3694    -34.6306 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_5                                  
REMARK     2: T0369.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_5.T0369.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  147   4.0   29   2.15  18.485    20.81
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_5
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      16.237  19.960   1.576  1.00  0.00              
ATOM      2  CA  THR     2      19.581  17.655   0.501  1.00  0.00              
ATOM      3  CA  ASP     3      18.632  15.746   3.596  1.00  0.00              
ATOM      4  CA  TRP     4      14.808  15.637   2.856  1.00  0.00              
ATOM      5  CA  GLN     5      15.423  14.362  -0.711  1.00  0.00              
ATOM      6  CA  GLN     6      17.738  11.645   0.437  1.00  0.00              
ATOM      7  CA  ALA     7      15.255  10.462   3.103  1.00  0.00              
ATOM      8  CA  LEU     8      12.388  10.371   0.564  1.00  0.00              
ATOM      9  CA  ASP     9      14.466   8.436  -2.022  1.00  0.00              
ATOM     10  CA  ARG    10      15.461   5.939   0.654  1.00  0.00              
ATOM     11  CA  HIS    11      11.836   5.456   1.724  1.00  0.00              
ATOM     12  CA  VAL    12      10.618   4.908  -1.869  1.00  0.00              
ATOM     13  CA  GLY    13      13.457   2.366  -2.236  1.00  0.00              
ATOM     14  CA  VAL    14      13.019   0.269   0.967  1.00  0.00              
ATOM     15  CA  GLY    15       9.292  -0.375   0.813  1.00  0.00              
ATOM     16  CA  VAL    16       9.723  -1.385  -2.839  1.00  0.00              
ATOM     17  CA  ARG    17      12.605  -3.731  -2.222  1.00  0.00              
ATOM     18  CA  THR    18      11.063  -5.740   0.647  1.00  0.00              
ATOM     19  CA  THR    19       7.826  -6.187  -1.292  1.00  0.00              
ATOM     20  CA  ARG    20       9.624  -7.332  -4.480  1.00  0.00              
ATOM     21  CA  ASP    21      11.616  -9.823  -2.397  1.00  0.00              
ATOM     22  CA  LEU    22       8.379 -11.270  -0.930  1.00  0.00              
ATOM     23  CA  ILE    23       6.935 -11.520  -4.451  1.00  0.00              
ATOM     24  CA  ARG    24      10.137 -13.248  -5.603  1.00  0.00              
ATOM     25  CA  LEU    25       9.918 -15.749  -2.731  1.00  0.00              
ATOM     26  CA  ILE    26       6.354 -16.790  -3.641  1.00  0.00              
ATOM     27  CA  GLN    27       7.087 -17.124  -7.390  1.00  0.00              
ATOM     28  CA  PRO    28      10.283 -19.187  -7.526  1.00  0.00              
ATOM     29  CA  GLU    29       8.592 -21.883  -5.448  1.00  0.00              
ATOM     30  CA  ASP    30       5.589 -22.124  -7.763  1.00  0.00              
ATOM     31  CA  TRP    31       7.502 -22.493 -11.069  1.00  0.00              
ATOM     32  CA  ASP    32       6.428 -21.172 -14.387  1.00  0.00              
ATOM     33  CA  LYS    33       9.130 -19.548 -16.580  1.00  0.00              
ATOM     34  CA  ARG    34       8.188 -16.795 -18.812  1.00  0.00              
ATOM     35  CA  PRO    35      10.013 -14.032 -20.572  1.00  0.00              
ATOM     36  CA  ILE    36       8.848 -10.821 -18.945  1.00  0.00              
ATOM     37  CA  SER    37       8.034  -8.078 -21.428  1.00  0.00              
ATOM     38  CA  GLY    38       4.387  -7.458 -20.651  1.00  0.00              
ATOM     39  CA  LYS    39       5.038  -6.831 -16.927  1.00  0.00              
ATOM     40  CA  ARG    40       7.405  -4.029 -17.924  1.00  0.00              
ATOM     41  CA  SER    41       4.863  -2.444 -20.315  1.00  0.00              
ATOM     42  CA  VAL    42       2.088  -2.472 -17.694  1.00  0.00              
ATOM     43  CA  TYR    43       4.317  -0.594 -15.174  1.00  0.00              
ATOM     44  CA  GLU    44       5.140   1.902 -17.897  1.00  0.00              
ATOM     45  CA  VAL    45       1.489   2.524 -18.882  1.00  0.00              
ATOM     46  CA  ALA    46       0.609   3.076 -15.269  1.00  0.00              
ATOM     47  CA  VAL    47       3.427   5.487 -14.618  1.00  0.00              
ATOM     48  CA  HIS    48       2.588   7.499 -17.770  1.00  0.00              
ATOM     49  CA  LEU    49      -1.127   7.696 -16.877  1.00  0.00              
ATOM     50  CA  ALA    50      -0.333   8.883 -13.369  1.00  0.00              
ATOM     51  CA  VAL    51       1.967  11.670 -14.540  1.00  0.00              
ATOM     52  CA  LEU    52      -0.290  12.955 -17.340  1.00  0.00              
ATOM     53  CA  LEU    53      -3.391  13.134 -15.161  1.00  0.00              
ATOM     54  CA  GLU    54      -2.051  14.421 -11.827  1.00  0.00              
ATOM     55  CA  ALA    55      -0.733  17.437 -13.717  1.00  0.00              
ATOM     56  CA  ASP    56      -4.133  18.439 -15.159  1.00  0.00              
ATOM     57  CA  LEU    57      -3.158  20.429 -18.017  1.00  0.00              
ATOM     58  CA  ARG    58       0.048  20.805 -20.121  1.00  0.00              
ATOM     59  CA  ILE    59       0.197  24.007 -22.154  1.00  0.00              
ATOM     60  CA  ALA    60       2.431  24.047 -25.181  1.00  0.00              
ATOM     61  CA  THR    61       3.857  27.208 -26.690  1.00  0.00              
ATOM     62  CA  GLY    62       2.790  27.331 -30.353  1.00  0.00              
ATOM     63  CA  ALA    63      -0.732  26.202 -29.615  1.00  0.00              
ATOM     64  CA  THR    64      -3.902  28.244 -30.379  1.00  0.00              
ATOM     65  CA  ALA    65      -5.705  29.935 -27.536  1.00  0.00              
ATOM     66  CA  ASP    66      -8.569  27.521 -27.168  1.00  0.00              
ATOM     67  CA  GLU    67      -6.158  24.637 -27.056  1.00  0.00              
ATOM     68  CA  MET    68      -4.059  26.357 -24.409  1.00  0.00              
ATOM     69  CA  ALA    69      -7.000  27.110 -22.202  1.00  0.00              
ATOM     70  CA  GLN    70      -8.119  23.480 -22.451  1.00  0.00              
ATOM     71  CA  PHE    71      -4.595  22.242 -21.556  1.00  0.00              
ATOM     72  CA  TYR    72      -4.455  24.524 -18.480  1.00  0.00              
ATOM     73  CA  ALA    73      -7.948  23.882 -17.130  1.00  0.00              
ATOM     74  CA  VAL    74      -8.261  20.111 -17.287  1.00  0.00              
ATOM     75  CA  PRO    75      -9.963  19.343 -14.030  1.00  0.00              
ATOM     76  CA  VAL    76      -9.066  15.810 -13.094  1.00  0.00              
ATOM     77  CA  LEU    77      -9.500  15.524  -9.346  1.00  0.00              
ATOM     78  CA  PRO    78      -6.969  13.495  -7.295  1.00  0.00              
ATOM     79  CA  GLU    79      -9.518  10.824  -6.420  1.00  0.00              
ATOM     80  CA  GLN    80     -10.626  10.419 -10.063  1.00  0.00              
ATOM     81  CA  LEU    81      -7.041  10.141 -11.218  1.00  0.00              
ATOM     82  CA  VAL    82      -6.238   7.518  -8.601  1.00  0.00              
ATOM     83  CA  ASP    83      -9.279   5.506  -9.708  1.00  0.00              
ATOM     84  CA  ARG    84      -8.238   5.709 -13.373  1.00  0.00              
ATOM     85  CA  LEU    85      -4.696   4.547 -12.489  1.00  0.00              
ATOM     86  CA  ASP    86      -6.026   1.605 -10.533  1.00  0.00              
ATOM     87  CA  GLN    87      -8.255   0.636 -13.509  1.00  0.00              
ATOM     88  CA  SER    88      -5.225   0.925 -15.814  1.00  0.00              
ATOM     89  CA  TRP    89      -3.064  -1.303 -13.572  1.00  0.00              
ATOM     90  CA  GLN    90      -5.740  -3.961 -13.333  1.00  0.00              
ATOM     91  CA  TYR    91      -6.154  -3.971 -17.159  1.00  0.00              
ATOM     92  CA  TYR    92      -2.455  -4.266 -17.762  1.00  0.00              
ATOM     93  CA  GLN    93      -1.991  -7.168 -15.411  1.00  0.00              
ATOM     94  CA  ASP    94      -4.879  -9.243 -16.849  1.00  0.00              
ATOM     95  CA  ARG    95      -3.749  -8.802 -20.476  1.00  0.00              
ATOM     96  CA  LEU    96      -0.101  -9.649 -19.875  1.00  0.00              
ATOM     97  CA  MET    97      -0.858 -12.695 -17.786  1.00  0.00              
ATOM     98  CA  ALA    98      -3.268 -14.030 -20.418  1.00  0.00              
ATOM     99  CA  ASP    99      -0.648 -13.545 -23.154  1.00  0.00              
ATOM    100  CA  PHE   100       2.061 -15.305 -21.135  1.00  0.00              
ATOM    101  CA  SER   101      -0.058 -18.354 -20.296  1.00  0.00              
ATOM    102  CA  THR   102      -1.061 -18.604 -23.964  1.00  0.00              
ATOM    103  CA  GLU   103       2.545 -18.341 -25.114  1.00  0.00              
ATOM    104  CA  THR   104       4.119 -21.267 -23.564  1.00  0.00              
ATOM    105  CA  THR   105       5.835 -19.991 -20.476  1.00  0.00              
ATOM    106  CA  TYR   106       3.209 -20.474 -17.825  1.00  0.00              
ATOM    107  CA  TRP   107       3.725 -17.957 -15.185  1.00  0.00              
ATOM    108  CA  GLY   108       3.193 -18.630 -11.516  1.00  0.00              
ATOM    109  CA  VAL   109       2.589 -15.009 -10.369  1.00  0.00              
ATOM    110  CA  THR   110       1.869 -14.547  -6.688  1.00  0.00              
ATOM    111  CA  ASP   111      -1.227 -12.321  -6.690  1.00  0.00              
ATOM    112  CA  SER   112      -0.913 -10.519  -3.350  1.00  0.00              
ATOM    113  CA  THR   113       2.722  -9.558  -4.108  1.00  0.00              
ATOM    114  CA  THR   114       2.245  -8.083  -7.612  1.00  0.00              
ATOM    115  CA  GLY   115      -0.680  -5.887  -6.389  1.00  0.00              
ATOM    116  CA  TRP   116       1.490  -4.793  -3.460  1.00  0.00              
ATOM    117  CA  LEU   117       4.390  -3.706  -5.719  1.00  0.00              
ATOM    118  CA  LEU   118       2.141  -1.633  -8.002  1.00  0.00              
ATOM    119  CA  GLU   119       0.560   0.124  -4.969  1.00  0.00              
ATOM    120  CA  ALA   120       3.994   0.758  -3.433  1.00  0.00              
ATOM    121  CA  ALA   121       5.266   2.385  -6.637  1.00  0.00              
ATOM    122  CA  VAL   122       2.195   4.592  -6.826  1.00  0.00              
ATOM    123  CA  HIS   123       2.643   5.700  -3.213  1.00  0.00              
ATOM    124  CA  LEU   124       6.320   6.507  -3.667  1.00  0.00              
ATOM    125  CA  TYR   125       5.634   8.452  -6.836  1.00  0.00              
ATOM    126  CA  HIS   126       2.962  10.696  -5.316  1.00  0.00              
ATOM    127  CA  HIS   127       4.475  11.411  -1.946  1.00  0.00              
ATOM    128  CA  ARG   128       7.627  12.924  -1.082  1.00  0.00              
ATOM    129  CA  SER   129       7.722  16.520  -2.132  1.00  0.00              
ATOM    130  CA  GLN   130      10.819  16.046  -4.353  1.00  0.00              
ATOM    131  CA  LEU   131       9.165  13.309  -6.419  1.00  0.00              
ATOM    132  CA  LEU   132       5.864  15.158  -6.839  1.00  0.00              
ATOM    133  CA  ASP   133       7.681  18.287  -7.963  1.00  0.00              
ATOM    134  CA  TYR   134       9.687  16.306 -10.506  1.00  0.00              
ATOM    135  CA  LEU   135       6.543  14.692 -11.907  1.00  0.00              
ATOM    136  CA  ASN   136       4.865  18.098 -12.183  1.00  0.00              
ATOM    137  CA  LEU   137       7.845  19.526 -14.000  1.00  0.00              
ATOM    138  CA  LEU   138       7.899  16.595 -16.458  1.00  0.00              
ATOM    139  CA  GLY   139       4.150  17.078 -17.099  1.00  0.00              
ATOM    140  CA  TYR   140       4.518  20.840 -17.715  1.00  0.00              
ATOM    141  CA  ASP   141       7.403  20.283 -20.184  1.00  0.00              
ATOM    142  CA  ILE   142       5.833  17.921 -22.731  1.00  0.00              
ATOM    143  CA  LYS   143       7.177  19.382 -25.929  1.00  0.00              
ATOM    144  CA  LEU   144       3.896  20.141 -27.769  1.00  0.00              
ATOM    145  CA  ASP   145       3.609  23.305 -29.785  1.00  0.00              
ATOM    146  CA  LEU   146       1.789  22.222 -33.056  1.00  0.00              
ATOM    147  CA  PHE   147       4.833  19.372 -33.215  1.00  0.00              
ATOM    148  CA  GLU   148       8.620  19.564 -31.404  1.00  0.00              
TER                                                                             
END
