
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS168_1-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS168_1-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        65 - 102         4.93    22.41
  LONGEST_CONTINUOUS_SEGMENT:    38        66 - 103         4.91    22.41
  LONGEST_CONTINUOUS_SEGMENT:    38        67 - 104         4.89    22.41
  LCS_AVERAGE:     21.61

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        69 - 88          1.98    23.57
  LCS_AVERAGE:      9.78

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        72 - 86          0.81    25.26
  LONGEST_CONTINUOUS_SEGMENT:    15        73 - 87          0.94    24.49
  LCS_AVERAGE:      5.91

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      3    7   15     3    3    5    6    7    7    9   11   11   11   12   13   15   17   19   20   22   25   28   29 
LCS_GDT     I       2     I       2      4    7   15     3    5    5    6    7    7    8   11   11   12   13   13   16   17   19   20   23   28   29   29 
LCS_GDT     P       3     P       3      4    7   15     3    5    5    5    7    7    9   11   11   12   13   13   16   17   19   21   24   28   29   29 
LCS_GDT     F       4     F       4      4    7   18     3    5    5    6    7    7    9   11   11   12   13   17   18   19   20   23   25   28   30   32 
LCS_GDT     K       5     K       5      4    7   20     0    5    5    6    7    7    9   11   11   13   14   18   19   20   23   26   28   29   33   35 
LCS_GDT     D       6     D       6      4    7   20     3    3    5    6    7    7    9   11   12   16   19   20   20   21   23   26   28   29   33   35 
LCS_GDT     I       7     I       7      4    7   20     3    3    5    6    7    7    9   11   13   16   19   20   20   21   23   26   30   37   37   42 
LCS_GDT     T       8     T       8      3    5   20     3    3    4    5    6    7    9   11   12   15   17   20   22   23   28   30   33   37   39   42 
LCS_GDT     L       9     L       9      3    5   20     3    3    4    4    6    7    9   10   13   15   16   18   19   20   28   29   33   37   39   42 
LCS_GDT     A      10     A      10      3   14   20     3    3    6    9   10   12   14   15   18   19   20   22   23   23   28   30   33   37   39   42 
LCS_GDT     D      11     D      11     10   14   20     5    9    9   10   12   13   15   17   18   19   20   22   29   31   34   37   37   37   40   42 
LCS_GDT     R      12     R      12     10   14   20     5    9    9   10   12   13   16   18   20   21   23   26   29   31   34   37   37   37   40   42 
LCS_GDT     D      13     D      13     10   14   21     5    9    9   10   12   13   15   17   18   19   21   25   29   31   34   37   37   40   43   44 
LCS_GDT     T      14     T      14     10   14   21     5    9    9   10   12   13   15   17   18   19   20   22   29   31   34   37   37   40   43   44 
LCS_GDT     I      15     I      15     10   14   21     5    9    9   10   12   13   15   17   18   19   20   25   29   31   34   37   37   40   43   44 
LCS_GDT     T      16     T      16     10   14   23     5    9    9   10   12   13   15   17   18   19   20   26   29   31   32   34   37   40   43   44 
LCS_GDT     A      17     A      17     10   14   26     5    9    9   10   12   13   15   17   18   19   21   23   24   27   29   32   37   40   43   44 
LCS_GDT     F      18     F      18     10   14   26     4    9    9   10   12   13   14   17   17   19   21   23   24   25   25   27   37   40   43   44 
LCS_GDT     T      19     T      19     10   14   26     5    9    9   10   12   13   15   17   18   19   21   23   24   25   25   27   31   32   38   41 
LCS_GDT     M      20     M      20     10   14   26     3    7    9   10   12   13   15   17   18   19   20   23   24   25   25   27   31   32   38   41 
LCS_GDT     K      21     K      21      5   14   26     3    5    5   10   12   13   15   17   18   19   21   23   24   25   25   27   31   32   35   38 
LCS_GDT     S      22     S      22      5   14   26     1    5    5    7    8   13   15   17   18   19   21   23   24   25   25   27   31   32   35   38 
LCS_GDT     D      23     D      23      5   14   26     2    5    5    8   12   13   15   17   18   19   21   23   24   25   25   27   31   32   34   38 
LCS_GDT     R      24     R      24      5    8   26     2    5    5    7    8    9   14   17   18   19   21   23   24   25   25   28   31   32   35   38 
LCS_GDT     R      25     R      25      5    8   26     4    5    5    7    8   10   15   17   18   19   21   23   24   25   26   29   32   35   37   41 
LCS_GDT     N      26     N      26      4    8   26     4    4    5    6    8   10   15   17   18   19   21   23   26   30   33   33   37   42   46   50 
LCS_GDT     C      27     C      27      4    8   26     4    4    5    7    8   10   10   13   15   17   21   24   27   30   33   40   43   48   52   58 
LCS_GDT     D      28     D      28      4   10   26     4    4    4    6    8    8   12   13   15   17   21   24   29   33   39   43   45   48   52   58 
LCS_GDT     L      29     L      29      5   12   26     3    3    5    9   10   11   12   13   14   17   21   24   28   34   40   44   48   49   52   58 
LCS_GDT     S      30     S      30      5   12   26     3    4    8    9   10   12   12   15   17   25   29   32   38   40   42   48   50   53   58   61 
LCS_GDT     F      31     F      31      9   12   26     6    8    9   10   13   16   19   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     S      32     S      32      9   12   26     6    8    9    9   10   11   12   13   15   17   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     N      33     N      33      9   12   26     6    8    9    9   10   11   13   15   17   21   26   32   38   40   43   48   50   53   58   61 
LCS_GDT     L      34     L      34      9   12   26     6    8    9    9   10   12   18   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     C      35     C      35      9   12   26     6    8    9   10   13   16   19   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     S      36     S      36      9   12   26     6    8    9    9   10   11   12   12   15   20   30   35   39   42   43   48   50   53   58   61 
LCS_GDT     W      37     W      37      9   12   26     4    8    9    9   10   11   13   21   22   24   30   33   39   42   43   48   50   53   58   61 
LCS_GDT     R      38     R      38      9   12   26     5    8    9    9   10   13   19   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     F      39     F      39      9   12   26     3    7    9    9    9   10   16   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     L      40     L      40      3   12   26     1    3    3    6    8   11   12   15   18   22   23   30   38   42   43   47   50   53   57   61 
LCS_GDT     Y      41     Y      41      3    4   26     0    3    4    7    8    8    9   12   14   18   22   25   29   34   37   42   44   51   54   58 
LCS_GDT     D      42     D      42      3    5   26     0    3    3    6    6    8    9   12   14   20   23   26   29   40   41   48   50   53   58   61 
LCS_GDT     T      43     T      43      5   10   19     3    4    5    7    7   10   10   10   11   18   22   24   27   34   37   41   43   45   51   58 
LCS_GDT     Q      44     Q      44      5   10   19     2    4    6    8    9   10   10   13   18   23   24   29   35   37   43   48   50   53   58   61 
LCS_GDT     F      45     F      45      5   10   19     3    4    6    8    9   10   10   16   21   27   32   34   37   40   43   48   50   53   58   61 
LCS_GDT     A      46     A      46      5   10   19     3    4    5    8    9   10   11   12   16   29   32   34   37   40   42   45   48   53   58   61 
LCS_GDT     V      47     V      47      5   10   19     3    5    6    8    9   10   11   12   14   15   18   21   24   30   34   39   44   48   53   58 
LCS_GDT     I      48     I      48      5   10   19     3    5    6    8    9   10   11   12   14   15   18   20   22   24   26   28   31   36   40   43 
LCS_GDT     D      49     D      49      5   10   19     3    5    6    8    9   10   11   12   14   15   17   19   21   24   25   28   30   33   36   39 
LCS_GDT     D      50     D      50      5   10   19     3    5    6    8    9   10   11   12   14   15   18   20   21   24   26   28   31   36   40   46 
LCS_GDT     F      51     F      51      5   10   19     3    5    6    8    9   11   12   13   15   16   20   21   24   30   33   37   40   46   50   55 
LCS_GDT     L      52     L      52      4   10   19     2    3    4    7    9   11   12   14   24   25   31   34   36   39   42   48   50   53   58   61 
LCS_GDT     V      53     V      53      5    9   19     3    3    5    9   10   16   19   23   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     F      54     F      54      5    9   19     3    4    8    9   13   16   19   24   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     K      55     K      55      5    9   19     3    5    8    9   10   12   19   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     F      56     F      56      5    9   19     3    4    8   10   13   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     W      57     W      57      5    9   19     3    4   10   15   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     A      58     A      58      3    9   19     3    3   10   15   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     G      59     G      59      4    9   19     3    4    5   10   16   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     E      60     E      60      4    9   23     3    4    8    9   10   12   13   16   21   25   29   30   33   40   41   48   50   53   58   61 
LCS_GDT     Q      61     Q      61      5    9   33     3    5    7    9   10   12   13   15   18   22   24   29   34   38   42   48   50   53   58   61 
LCS_GDT     L      62     L      62      5    9   35     4    5    5    7   10   13   16   21   22   24   30   33   37   40   43   45   48   53   58   61 
LCS_GDT     A      63     A      63      5    9   35     4    5    5    9   10   13   16   21   22   24   32   34   37   40   43   48   50   53   58   61 
LCS_GDT     Y      64     Y      64      5    9   35     4    5    5    9   10   14   19   23   27   31   33   35   37   40   43   45   50   53   58   61 
LCS_GDT     M      65     M      65      5    9   38     4    5    8    9   10   14   19   24   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     M      66     M      66      3    9   38     3    4    8    9   10   14   19   24   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     P      67     P      67      3    7   38     3    3    5    9   10   16   21   24   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     V      68     V      68      3    7   38     3    4    4    6   10   13   21   24   27   31   33   35   37   40   43   48   50   53   58   61 
LCS_GDT     G      69     G      69      3   20   38     3    4    4    6    9   18   21   24   26   29   33   35   37   40   43   45   47   53   58   61 
LCS_GDT     N      70     N      70      3   20   38     3    4   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   53   58   61 
LCS_GDT     G      71     G      71      3   20   38     3    6   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   53   57   61 
LCS_GDT     D      72     D      72     15   20   38     3    5    6   12   16   19   22   24   27   31   33   35   37   40   43   45   48   53   57   61 
LCS_GDT     L      73     L      73     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   53   58   61 
LCS_GDT     K      74     K      74     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   51   57   61 
LCS_GDT     A      75     A      75     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   51   55   60 
LCS_GDT     V      76     V      76     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   53   58   61 
LCS_GDT     L      77     L      77     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   53   58   61 
LCS_GDT     R      78     R      78     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   51   55   60 
LCS_GDT     K      79     K      79     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   50   53   58 
LCS_GDT     L      80     L      80     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   51   55   60 
LCS_GDT     I      81     I      81     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   51   55   60 
LCS_GDT     E      82     E      82     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   50   52   57 
LCS_GDT     D      83     D      83     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   50   52   56 
LCS_GDT     A      84     A      84     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   50   52   57 
LCS_GDT     D      85     D      85     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   50   52   57 
LCS_GDT     K      86     K      86     15   20   38    14   14   15   17   17   19   22   24   27   31   33   35   37   40   43   45   48   50   52   55 
LCS_GDT     E      87     E      87     15   20   38     3    4    9   17   17   19   22   24   27   31   33   35   37   40   43   45   48   50   52   55 
LCS_GDT     K      88     K      88      3   20   38     3    3    4    9   10   17   22   24   27   31   33   35   37   40   43   45   47   50   52   55 
LCS_GDT     H      89     H      89      3    6   38     0    3    4    9   10   16   21   24   27   31   33   35   37   40   43   45   48   50   52   55 
LCS_GDT     N      90     N      90      3    9   38     2    3    5    6    8   11   13   23   25   31   33   34   37   40   43   45   47   50   52   55 
LCS_GDT     F      91     F      91      6    9   38     2    4    7    8    8    9   11   15   18   22   25   32   36   38   41   44   47   48   51   55 
LCS_GDT     C      92     C      92      6    9   38     3    4    7    8   10   14   20   24   27   31   33   35   37   40   43   45   48   50   52   57 
LCS_GDT     M      93     M      93      6    9   38     4    5    7    9   13   17   22   24   27   30   33   35   37   40   43   45   48   51   55   60 
LCS_GDT     L      94     L      94      6   16   38     3    5    7   10   17   19   22   24   26   29   33   35   36   39   42   48   50   53   58   61 
LCS_GDT     G      95     G      95      6   16   38     4    5    7    8    8   13   21   23   25   28   29   32   39   42   43   48   50   53   58   61 
LCS_GDT     V      96     V      96     14   18   38     8   13   14   15   17   19   21   23   25   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     C      97     C      97     14   18   38     3   13   14   15   18   19   20   22   23   26   31   35   39   42   43   46   49   53   58   61 
LCS_GDT     S      98     S      98     14   18   38    10   13   14   15   18   19   20   22   23   26   31   35   39   42   43   46   49   53   58   61 
LCS_GDT     N      99     N      99     14   18   38    10   13   14   15   18   19   20   22   23   24   29   32   35   42   43   44   45   49   54   61 
LCS_GDT     M     100     M     100     14   18   38    10   13   14   15   18   19   20   22   24   26   31   35   39   42   43   48   50   53   58   61 
LCS_GDT     R     101     R     101     14   18   38    10   13   14   15   18   19   22   24   26   29   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     A     102     A     102     14   18   38    10   13   14   15   18   19   22   24   26   29   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     D     103     D     103     14   18   38    10   13   14   15   18   19   20   22   23   28   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     L     104     L     104     14   18   38    10   13   14   15   18   19   20   23   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     E     105     E     105     14   18   37    10   13   14   15   18   19   21   24   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     A     106     A     106     14   18   27    10   13   14   15   18   19   20   23   27   31   33   35   39   42   43   48   50   53   58   61 
LCS_GDT     I     107     I     107     14   18   27    10   13   14   15   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     L     108     L     108     14   18   27     4   13   14   15   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     P     109     P     109     14   18   27     4    4    8   15   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     E     110     E     110      5   18   27     3    4    8   14   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     R     111     R     111      5   18   27     3    4    8   15   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     F     112     F     112      5   18   27     3    8   11   15   18   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     I     113     I     113      5   18   27     3    4    5    6   13   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     F     114     F     114      3    8   27     3    6   13   15   16   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     T     115     T     115      3    8   27     3    3    6   10   15   18   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     E     116     E     116      3    6   27     3    9   14   15   16   19   20   23   27   29   32   35   39   42   43   48   50   53   58   61 
LCS_GDT     D     117     D     117      3    6   27     0    3    3    4    7    8   11   16   22   26   31   35   39   42   43   46   48   53   54   57 
LCS_GDT     K     290     K     290      3    3    9     0    3    3    3    3    3    4    5    6    8    8    9    9   10   11   12   12   12   12   13 
LCS_GDT     Y     291     Y     291      3    3    9     3    3    3    3    3    4    4    7    7    8    8   10   11   13   14   17   18   19   20   22 
LCS_GDT     M     292     M     292      3    3    9     3    3    3    3    3    4    4    6    6    8    8   10   11   13   14   17   18   19   20   22 
LCS_GDT     A     293     A     293      3    3    9     3    3    3    3    3    4    5    7    7    8    8   10   11   13   14   17   18   19   20   22 
LCS_GDT     C     294     C     294      4    5    9     1    4    4    4    5    5    5    7    7    8    8   10   11   13   14   17   18   20   20   22 
LCS_GDT     L     295     L     295      4    5    9     3    4    4    4    5    5    7   10   10   15   15   17   17   17   18   20   20   20   21   22 
LCS_GDT     K     296     K     296      4    5    9     3    4    4    4    5    6    7   10   10   15   15   17   17   17   18   20   20   20   21   22 
LCS_GDT     D     297     D     297      4    5    9     3    4    4    4    5    5    5    7   10   12   12   17   17   17   18   20   20   20   21   22 
LCS_GDT     H     298     H     298      3    5    9     3    3    4    4    5    6    8   10   13   14   14   15   15   17   18   20   20   20   21   22 
LCS_AVERAGE  LCS_A:  12.44  (   5.91    9.78   21.61 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     14     15     17     18     19     22     24     27     31     33     35     39     42     43     48     50     53     58     61 
GDT PERCENT_CA  11.11  11.11  11.90  13.49  14.29  15.08  17.46  19.05  21.43  24.60  26.19  27.78  30.95  33.33  34.13  38.10  39.68  42.06  46.03  48.41
GDT RMS_LOCAL    0.25   0.25   0.70   1.18   1.52   1.62   2.20   2.47   3.13   3.41   3.59   3.90   4.27   4.52   4.63   5.59   5.70   5.91   6.70   6.89
GDT RMS_ALL_CA  25.01  25.01  24.83  23.93  19.71  19.70  21.77  22.02  21.03  21.02  21.04  21.27  20.86  20.97  21.12  21.06  21.05  20.98  20.93  21.04

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         36.095
LGA    I       2      I       2         33.169
LGA    P       3      P       3         37.109
LGA    F       4      F       4         31.809
LGA    K       5      K       5         32.816
LGA    D       6      D       6         34.456
LGA    I       7      I       7         33.078
LGA    T       8      T       8         34.862
LGA    L       9      L       9         34.735
LGA    A      10      A      10         34.080
LGA    D      11      D      11         29.438
LGA    R      12      R      12         32.651
LGA    D      13      D      13         36.714
LGA    T      14      T      14         30.890
LGA    I      15      I      15         28.199
LGA    T      16      T      16         34.390
LGA    A      17      A      17         35.284
LGA    F      18      F      18         30.326
LGA    T      19      T      19         32.756
LGA    M      20      M      20         38.594
LGA    K      21      K      21         42.980
LGA    S      22      S      22         41.464
LGA    D      23      D      23         43.902
LGA    R      24      R      24         38.527
LGA    R      25      R      25         36.139
LGA    N      26      N      26         30.619
LGA    C      27      C      27         28.595
LGA    D      28      D      28         25.853
LGA    L      29      L      29         22.534
LGA    S      30      S      30         19.380
LGA    F      31      F      31         15.635
LGA    S      32      S      32         17.099
LGA    N      33      N      33         17.487
LGA    L      34      L      34         16.254
LGA    C      35      C      35         17.152
LGA    S      36      S      36         21.381
LGA    W      37      W      37         22.243
LGA    R      38      R      38         19.849
LGA    F      39      F      39         25.072
LGA    L      40      L      40         29.278
LGA    Y      41      Y      41         29.581
LGA    D      42      D      42         28.454
LGA    T      43      T      43         27.796
LGA    Q      44      Q      44         21.089
LGA    F      45      F      45         16.023
LGA    A      46      A      46         11.131
LGA    V      47      V      47         13.192
LGA    I      48      I      48         17.083
LGA    D      49      D      49         21.131
LGA    D      50      D      50         19.439
LGA    F      51      F      51         15.810
LGA    L      52      L      52         10.504
LGA    V      53      V      53          7.870
LGA    F      54      F      54          9.591
LGA    K      55      K      55         12.169
LGA    F      56      F      56         17.229
LGA    W      57      W      57         21.588
LGA    A      58      A      58         24.893
LGA    G      59      G      59         27.092
LGA    E      60      E      60         22.229
LGA    Q      61      Q      61         18.133
LGA    L      62      L      62         12.489
LGA    A      63      A      63         12.001
LGA    Y      64      Y      64          9.540
LGA    M      65      M      65          9.286
LGA    M      66      M      66          8.566
LGA    P      67      P      67          6.088
LGA    V      68      V      68          4.740
LGA    G      69      G      69          3.788
LGA    N      70      N      70          1.218
LGA    G      71      G      71          1.198
LGA    D      72      D      72          2.287
LGA    L      73      L      73          1.373
LGA    K      74      K      74          3.390
LGA    A      75      A      75          3.053
LGA    V      76      V      76          1.343
LGA    L      77      L      77          1.973
LGA    R      78      R      78          1.937
LGA    K      79      K      79          1.623
LGA    L      80      L      80          2.563
LGA    I      81      I      81          2.434
LGA    E      82      E      82          0.512
LGA    D      83      D      83          2.674
LGA    A      84      A      84          3.762
LGA    D      85      D      85          2.076
LGA    K      86      K      86          2.029
LGA    E      87      E      87          2.324
LGA    K      88      K      88          3.824
LGA    H      89      H      89          5.027
LGA    N      90      N      90          9.007
LGA    F      91      F      91         10.720
LGA    C      92      C      92          6.665
LGA    M      93      M      93          3.186
LGA    L      94      L      94          2.819
LGA    G      95      G      95          5.410
LGA    V      96      V      96          5.984
LGA    C      97      C      97         10.940
LGA    S      98      S      98          9.514
LGA    N      99      N      99          9.674
LGA    M     100      M     100          7.145
LGA    R     101      R     101          2.005
LGA    A     102      A     102          3.418
LGA    D     103      D     103          8.336
LGA    L     104      L     104          7.138
LGA    E     105      E     105          7.724
LGA    A     106      A     106         11.303
LGA    I     107      I     107         15.236
LGA    L     108      L     108         16.014
LGA    P     109      P     109         17.352
LGA    E     110      E     110         17.080
LGA    R     111      R     111         17.058
LGA    F     112      F     112         14.351
LGA    I     113      I     113         13.772
LGA    F     114      F     114         11.557
LGA    T     115      T     115         13.711
LGA    E     116      E     116         18.243
LGA    D     117      D     117         20.075
LGA    K     290      K     290         25.016
LGA    Y     291      Y     291         26.737
LGA    M     292      M     292         30.446
LGA    A     293      A     293         33.303
LGA    C     294      C     294         31.808
LGA    L     295      L     295         35.052
LGA    K     296      K     296         38.486
LGA    D     297      D     297         41.419
LGA    H     298      H     298         45.267

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     24    2.47    20.437    17.480     0.935

LGA_LOCAL      RMSD =  2.468  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.204  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 18.326  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.976991 * X  +  -0.183241 * Y  +   0.109137 * Z  +  43.111557
  Y_new =   0.212475 * X  +  -0.791816 * Y  +   0.572609 * Z  +  53.209339
  Z_new =  -0.018509 * X  +   0.582623 * Y  +   0.812532 * Z  +   4.586327 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.622075   -2.519517  [ DEG:    35.6423   -144.3577 ]
  Theta =   0.018510    3.123082  [ DEG:     1.0606    178.9394 ]
  Phi   =   2.927448   -0.214144  [ DEG:   167.7304    -12.2696 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS168_1-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS168_1-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   24   2.47  17.480    18.33
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS168_1-D1
PFRMAT TS
TARGET T0372
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      15.889  37.882  -6.576  1.00 25.00           C
ATOM      2  CA  ILE     2      19.104  35.856  -6.562  1.00 25.00           C
ATOM      3  CA  PRO     3      19.140  33.765  -9.697  1.00 25.00           C
ATOM      4  CA  PHE     4      22.550  34.748 -11.019  1.00 25.00           C
ATOM      5  CA  LYS     5      25.134  34.890 -13.766  1.00 25.00           C
ATOM      6  CA  ASP     6      25.206  31.063 -14.052  1.00 25.00           C
ATOM      7  CA  ILE     7      29.001  31.761 -14.060  1.00 25.00           C
ATOM      8  CA  THR     8      29.789  29.938 -10.770  1.00 25.00           C
ATOM      9  CA  LEU     9      29.932  33.252  -8.849  1.00 25.00           C
ATOM     10  CA  ALA    10      33.046  32.978  -6.720  1.00 25.00           C
ATOM     11  CA  ASP    11      35.896  33.297  -4.212  1.00 25.00           C
ATOM     12  CA  ARG    12      38.156  30.636  -5.784  1.00 25.00           C
ATOM     13  CA  ASP    13      37.581  32.160  -9.250  1.00 25.00           C
ATOM     14  CA  THR    14      38.449  35.635  -7.893  1.00 25.00           C
ATOM     15  CA  ILE    15      41.652  34.247  -6.318  1.00 25.00           C
ATOM     16  CA  THR    16      42.601  32.597  -9.642  1.00 25.00           C
ATOM     17  CA  ALA    17      41.997  35.901 -11.483  1.00 25.00           C
ATOM     18  CA  PHE    18      44.187  37.746  -8.939  1.00 25.00           C
ATOM     19  CA  THR    19      46.959  35.144  -9.403  1.00 25.00           C
ATOM     20  CA  MET    20      46.734  35.546 -13.204  1.00 25.00           C
ATOM     21  CA  LYS    21      50.023  34.993 -15.085  1.00 25.00           C
ATOM     22  CA  SER    22      53.266  36.958 -15.320  1.00 25.00           C
ATOM     23  CA  ASP    23      56.797  37.994 -14.222  1.00 25.00           C
ATOM     24  CA  ARG    24      56.853  41.472 -12.648  1.00 25.00           C
ATOM     25  CA  ARG    25      55.579  43.465  -9.673  1.00 25.00           C
ATOM     26  CA  ASN    26      54.582  45.798  -6.902  1.00 25.00           C
ATOM     27  CA  CYS    27      53.703  49.460  -6.810  1.00 25.00           C
ATOM     28  CA  ASP    28      56.331  51.273  -4.740  1.00 25.00           C
ATOM     29  CA  LEU    29      55.935  49.996  -1.178  1.00 25.00           C
ATOM     30  CA  SER    30      53.061  48.680   0.852  1.00 25.00           C
ATOM     31  CA  PHE    31      49.457  48.244  -0.419  1.00 25.00           C
ATOM     32  CA  SER    32      46.763  50.772  -1.428  1.00 25.00           C
ATOM     33  CA  ASN    33      49.073  53.663  -0.443  1.00 25.00           C
ATOM     34  CA  LEU    34      51.909  52.135  -2.514  1.00 25.00           C
ATOM     35  CA  CYS    35      49.559  51.778  -5.516  1.00 25.00           C
ATOM     36  CA  SER    36      48.483  55.435  -5.140  1.00 25.00           C
ATOM     37  CA  TRP    37      52.152  56.526  -5.004  1.00 25.00           C
ATOM     38  CA  ARG    38      52.898  54.494  -8.164  1.00 25.00           C
ATOM     39  CA  PHE    39      54.424  57.539  -9.916  1.00 25.00           C
ATOM     40  CA  LEU    40      53.721  59.240 -13.295  1.00 25.00           C
ATOM     41  CA  TYR    41      53.289  62.152 -15.658  1.00 25.00           C
ATOM     42  CA  ASP    42      51.324  65.457 -15.317  1.00 25.00           C
ATOM     43  CA  THR    43      48.337  67.699 -14.445  1.00 25.00           C
ATOM     44  CA  GLN    44      49.399  66.097 -11.228  1.00 25.00           C
ATOM     45  CA  PHE    45      50.393  63.915  -8.219  1.00 25.00           C
ATOM     46  CA  ALA    46      52.153  61.531  -5.837  1.00 25.00           C
ATOM     47  CA  VAL    47      55.378  60.650  -4.022  1.00 25.00           C
ATOM     48  CA  ILE    48      58.613  60.840  -2.141  1.00 25.00           C
ATOM     49  CA  ASP    49      59.309  58.092   0.369  1.00 25.00           C
ATOM     50  CA  ASP    50      56.440  56.348  -1.477  1.00 25.00           C
ATOM     51  CA  PHE    51      53.247  58.056  -0.258  1.00 25.00           C
ATOM     52  CA  LEU    52      49.454  58.778  -0.286  1.00 25.00           C
ATOM     53  CA  VAL    53      46.276  58.945   1.814  1.00 25.00           C
ATOM     54  CA  PHE    54      44.691  59.444  -1.610  1.00 25.00           C
ATOM     55  CA  LYS    55      44.872  59.472  -5.388  1.00 25.00           C
ATOM     56  CA  PHE    56      41.622  61.410  -5.893  1.00 25.00           C
ATOM     57  CA  TRP    57      39.555  62.349  -8.927  1.00 25.00           C
ATOM     58  CA  ALA    58      39.105  61.142 -12.524  1.00 25.00           C
ATOM     59  CA  GLY    59      37.894  59.797 -15.924  1.00 25.00           C
ATOM     60  CA  GLU    60      38.564  56.244 -17.215  1.00 25.00           C
ATOM     61  CA  GLN    61      40.845  53.903 -15.249  1.00 25.00           C
ATOM     62  CA  LEU    62      42.363  52.712 -11.927  1.00 25.00           C
ATOM     63  CA  ALA    63      42.195  54.151  -8.410  1.00 25.00           C
ATOM     64  CA  TYR    64      43.790  53.554  -5.000  1.00 25.00           C
ATOM     65  CA  MET    65      41.986  55.009  -2.020  1.00 25.00           C
ATOM     66  CA  MET    66      40.720  54.614   1.502  1.00 25.00           C
ATOM     67  CA  PRO    67      40.314  58.374   1.257  1.00 25.00           C
ATOM     68  CA  VAL    68      36.995  60.134   1.580  1.00 25.00           C
ATOM     69  CA  GLY    69      33.380  60.993   2.563  1.00 25.00           C
ATOM     70  CA  ASN    70      33.220  64.744   3.360  1.00 25.00           C
ATOM     71  CA  GLY    71      34.176  67.274   0.686  1.00 25.00           C
ATOM     72  CA  ASP    72      30.732  66.989  -0.971  1.00 25.00           C
ATOM     73  CA  LEU    73      31.621  63.517  -2.264  1.00 25.00           C
ATOM     74  CA  LYS    74      32.451  64.303  -5.920  1.00 25.00           C
ATOM     75  CA  ALA    75      36.012  62.986  -5.421  1.00 25.00           C
ATOM     76  CA  VAL    76      34.631  59.779  -3.848  1.00 25.00           C
ATOM     77  CA  LEU    77      32.235  59.331  -6.801  1.00 25.00           C
ATOM     78  CA  ARG    78      35.133  59.816  -9.258  1.00 25.00           C
ATOM     79  CA  LYS    79      37.208  57.216  -7.359  1.00 25.00           C
ATOM     80  CA  LEU    80      34.275  54.757  -7.471  1.00 25.00           C
ATOM     81  CA  ILE    81      33.904  55.331 -11.239  1.00 25.00           C
ATOM     82  CA  GLU    82      37.652  54.713 -11.727  1.00 25.00           C
ATOM     83  CA  ASP    83      37.407  51.474  -9.697  1.00 25.00           C
ATOM     84  CA  ALA    84      34.430  50.339 -11.823  1.00 25.00           C
ATOM     85  CA  ASP    85      36.395  51.094 -15.023  1.00 25.00           C
ATOM     86  CA  LYS    86      39.374  49.089 -13.694  1.00 25.00           C
ATOM     87  CA  GLU    87      40.523  45.492 -13.667  1.00 25.00           C
ATOM     88  CA  LYS    88      38.633  44.699 -10.404  1.00 25.00           C
ATOM     89  CA  HIS    89      37.798  45.553  -6.799  1.00 25.00           C
ATOM     90  CA  ASN    90      39.011  42.148  -5.601  1.00 25.00           C
ATOM     91  CA  PHE    91      40.430  43.886  -2.466  1.00 25.00           C
ATOM     92  CA  CYS    92      36.928  45.227  -1.787  1.00 25.00           C
ATOM     93  CA  MET    93      33.419  46.623  -1.520  1.00 25.00           C
ATOM     94  CA  LEU    94      31.990  49.606   0.329  1.00 25.00           C
ATOM     95  CA  GLY    95      29.102  51.884   1.252  1.00 25.00           C
ATOM     96  CA  VAL    96      27.415  50.271  -1.723  1.00 25.00           C
ATOM     97  CA  CYS    97      24.048  49.684  -3.413  1.00 25.00           C
ATOM     98  CA  SER    98      20.518  49.910  -2.088  1.00 25.00           C
ATOM     99  CA  ASN    99      20.001  48.675   1.499  1.00 25.00           C
ATOM    100  CA  MET   100      23.683  49.368   2.295  1.00 25.00           C
ATOM    101  CA  ARG   101      23.359  52.895   0.839  1.00 25.00           C
ATOM    102  CA  ALA   102      20.228  53.508   2.956  1.00 25.00           C
ATOM    103  CA  ASP   103      22.077  52.300   6.084  1.00 25.00           C
ATOM    104  CA  LEU   104      25.004  54.638   5.287  1.00 25.00           C
ATOM    105  CA  GLU   105      22.575  57.567   4.842  1.00 25.00           C
ATOM    106  CA  ALA   106      20.930  56.743   8.202  1.00 25.00           C
ATOM    107  CA  ILE   107      24.368  56.633   9.887  1.00 25.00           C
ATOM    108  CA  LEU   108      25.162  60.298   9.008  1.00 25.00           C
ATOM    109  CA  PRO   109      21.713  61.710   9.697  1.00 25.00           C
ATOM    110  CA  GLU   110      19.259  61.870   6.745  1.00 25.00           C
ATOM    111  CA  ARG   111      22.215  63.229   4.695  1.00 25.00           C
ATOM    112  CA  PHE   112      24.739  62.151   2.110  1.00 25.00           C
ATOM    113  CA  ILE   113      26.023  59.188   0.047  1.00 25.00           C
ATOM    114  CA  PHE   114      27.723  56.997  -2.508  1.00 25.00           C
ATOM    115  CA  THR   115      28.872  54.566  -5.174  1.00 25.00           C
ATOM    116  CA  GLU   116      27.291  55.667  -8.474  1.00 25.00           C
ATOM    117  CA  ASP   117      24.011  53.702  -8.774  1.00 25.00           C
ATOM    290  CA  LYS   290      43.680  47.513  24.992  1.00 25.00           C
ATOM    291  CA  TYR   291      45.074  47.248  21.434  1.00 25.00           C
ATOM    292  CA  MET   292      47.906  44.995  22.687  1.00 25.00           C
ATOM    293  CA  ALA   293      45.371  42.775  24.507  1.00 25.00           C
ATOM    294  CA  CYS   294      43.261  42.531  21.319  1.00 25.00           C
ATOM    295  CA  LEU   295      46.373  41.568  19.304  1.00 25.00           C
ATOM    296  CA  LYS   296      44.934  38.034  19.667  1.00 25.00           C
ATOM    297  CA  ASP   297      48.432  36.993  18.857  1.00 25.00           C
ATOM    298  CA  HIS   298      50.245  36.166  22.088  1.00 25.00           C
TER
END
