
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS168_2-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS168_2-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34        68 - 101         4.95    24.14
  LONGEST_CONTINUOUS_SEGMENT:    34        69 - 102         4.76    24.23
  LONGEST_CONTINUOUS_SEGMENT:    34        70 - 103         4.79    24.29
  LONGEST_CONTINUOUS_SEGMENT:    34        71 - 104         4.94    24.34
  LCS_AVERAGE:     20.16

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        65 - 87          1.88    23.24
  LCS_AVERAGE:      9.60

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        72 - 87          0.62    23.18
  LCS_AVERAGE:      5.62

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      4    5   21     3    3    5    5    6    8   11   15   16   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     I       2     I       2      4    5   21     3    3    5    5    7    9   11   15   16   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     P       3     P       3      4    5   22     3    3    5    5    6    6    8   15   16   17   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     F       4     F       4      4    5   22     3    3    5    5    5    6    9   15   16   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     K       5     K       5      3    5   22     3    3    3    4    5    6    8   15   16   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     D       6     D       6      3    5   22     3    3    4    6    6    6    9   15   16   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     I       7     I       7      3    5   22     3    3    3    6    6    9   12   14   16   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     T       8     T       8      3   13   22     3    3    8    9   12   12   14   16   18   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     L       9     L       9     11   15   22     3    8   10   12   13   14   14   16   18   18   20   23   26   28   31   32   34   36   38   40 
LCS_GDT     A      10     A      10     11   15   22     3    3   10   12   13   14   14   16   18   18   20   23   25   28   31   32   34   36   38   40 
LCS_GDT     D      11     D      11     11   15   22     4    9   10   12   13   14   14   16   18   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     R      12     R      12     11   15   22     4    9   10   12   13   14   14   16   18   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     D      13     D      13     11   15   22     5    9   10   12   13   14   14   16   18   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     T      14     T      14     11   15   22     5    9   10   12   13   14   14   16   18   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     I      15     I      15     11   15   22     5    9   10   12   13   14   14   16   18   21   21   24   26   28   31   32   34   36   38   40 
LCS_GDT     T      16     T      16     11   15   22     5    9   10   12   13   14   14   16   18   18   21   23   26   28   31   32   34   36   38   40 
LCS_GDT     A      17     A      17     11   15   22     5    9   10   12   13   14   14   16   18   18   21   23   26   28   31   31   34   36   38   40 
LCS_GDT     F      18     F      18     11   15   22     4    9   10   12   13   14   14   16   18   18   21   23   26   28   30   31   33   36   38   42 
LCS_GDT     T      19     T      19     11   15   22     5    9   10   12   13   14   14   16   18   18   21   22   26   28   30   31   34   42   45   49 
LCS_GDT     M      20     M      20     10   15   22     3    7    9   12   13   14   14   16   18   18   21   22   26   28   30   31   35   42   45   49 
LCS_GDT     K      21     K      21      4   15   22     3    3    8   10   13   14   14   16   18   18   19   20   22   24   25   29   34   35   45   49 
LCS_GDT     S      22     S      22      4   15   22     3    3    5    6    8    9   14   15   18   18   19   20   22   23   25   27   31   34   37   42 
LCS_GDT     D      23     D      23      4   15   22     3    3   10   12   13   14   14   16   18   18   19   22   26   28   30   34   38   40   43   49 
LCS_GDT     R      24     R      24      3    8   22     0    3    5    6    8    9   11   15   17   18   19   21   26   28   30   34   38   40   47   48 
LCS_GDT     R      25     R      25      3    8   21     3    3    5    6    8    9   12   14   17   18   22   26   28   30   33   37   43   46   48   50 
LCS_GDT     N      26     N      26      3    8   21     3    3    4    6    8    9   10   14   17   18   19   23   28   30   32   37   43   46   48   50 
LCS_GDT     C      27     C      27      4    8   21     3    3    4    5    8    9   10   12   17   20   22   26   29   32   36   41   43   46   48   51 
LCS_GDT     D      28     D      28      4    6   21     3    3    4    4    6    7    9   12   16   26   29   31   33   36   37   41   43   46   48   51 
LCS_GDT     L      29     L      29      4    6   20     3    3    4    4    6    7   11   13   20   26   29   31   33   37   39   41   43   46   48   51 
LCS_GDT     S      30     S      30      4    6   19     3    3    4    8   10   12   16   19   20   23   29   31   33   37   39   41   43   46   48   51 
LCS_GDT     F      31     F      31     10   10   19     6    8    9   10   11   12   16   19   20   23   28   31   33   37   39   41   43   46   48   51 
LCS_GDT     S      32     S      32     10   10   19     6    8    9   10   11   11   13   16   19   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     N      33     N      33     10   10   19     6    8    9   10   11   11   11   13   19   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     L      34     L      34     10   10   19     6    8    9   10   11   11   14   19   22   26   29   31   33   37   39   41   43   46   48   51 
LCS_GDT     C      35     C      35     10   10   19     6    8    9   10   11   11   15   19   20   26   29   31   33   36   38   41   43   46   48   51 
LCS_GDT     S      36     S      36     10   10   19     6    8    9   10   11   12   16   19   20   26   29   31   33   36   37   41   43   46   48   51 
LCS_GDT     W      37     W      37     10   10   19     4    8    9   10   11   11   11   18   22   26   29   31   33   36   37   41   43   46   48   50 
LCS_GDT     R      38     R      38     10   10   19     5    8    9   10   11   11   17   18   21   23   29   29   33   36   37   41   42   44   48   50 
LCS_GDT     F      39     F      39     10   10   19     3    3    9   10   11   11   14   18   20   23   27   28   31   36   37   41   42   44   45   47 
LCS_GDT     L      40     L      40     10   10   19     3    3    4   10   11   11   11   13   14   15   16   17   20   23   24   34   36   40   44   46 
LCS_GDT     Y      41     Y      41      3    5   19     3    3    4    4    6    7    8   11   14   14   16   17   20   22   23   25   28   29   30   32 
LCS_GDT     D      42     D      42      4    9   19     3    4    4    7    8    9    9   10   12   14   16   17   20   22   23   26   26   28   31   32 
LCS_GDT     T      43     T      43      4    9   19     3    4    4    7    8    9    9   10   14   14   16   17   20   22   23   26   26   30   36   39 
LCS_GDT     Q      44     Q      44      4    9   19     3    4    5    7    8    9   10   12   14   14   16   17   20   22   26   29   34   38   42   45 
LCS_GDT     F      45     F      45      4    9   19     3    4    5    7    8    9    9   12   14   14   16   17   21   25   33   38   43   46   48   50 
LCS_GDT     A      46     A      46      4    9   23     3    4    5    7    8    9    9   10   12   13   18   21   27   31   34   38   43   46   48   51 
LCS_GDT     V      47     V      47      4    9   27     3    4    5    5    8   11   14   17   18   21   23   27   30   34   39   41   43   46   48   51 
LCS_GDT     I      48     I      48      4    9   27     3    3    4    7    9   11   14   16   18   21   23   26   29   33   36   41   43   46   48   51 
LCS_GDT     D      49     D      49      3    9   27     3    4    6    8    9   12   14   16   18   21   23   27   32   37   39   41   43   46   48   51 
LCS_GDT     D      50     D      50      3    9   27     3    3    5    7    8   10   14   17   18   20   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     F      51     F      51      4    8   27     3    3    5    7    8   11   14   17   18   20   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     L      52     L      52      4    8   27     3    3    5    8   11   12   15   15   19   20   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     V      53     V      53      4    8   27     3    3    5    8    9   12   15   16   19   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     F      54     F      54      4    8   27     3    4    5    8    9   12   14   16   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     K      55     K      55      3    9   27     3    3    5    7    8   11   14   16   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     F      56     F      56      3    9   27     3    4    6    8   10   12   14   16   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     W      57     W      57      4    9   28     3    4    6    8    9   12   14   16   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     A      58     A      58      4    9   28     3    4    5    7    9   11   14   16   18   21   23   30   32   37   39   41   43   46   48   51 
LCS_GDT     G      59     G      59      4    9   30     3    4    5    7    9   11   13   14   18   21   23   30   32   37   39   41   43   46   48   51 
LCS_GDT     E      60     E      60      4    9   32     3    4    6    8    9   12   13   15   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     Q      61     Q      61      4    9   33     3    4    6    8    9   12   13   16   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     L      62     L      62      4    9   33     3    4    4    7    8   12   14   17   20   24   27   28   29   37   39   41   43   46   48   51 
LCS_GDT     A      63     A      63      4    9   33     3    4    5    7   10   12   18   22   26   27   27   30   32   37   39   41   43   46   48   51 
LCS_GDT     Y      64     Y      64      4    8   33     3    4    6    8    9   12   18   24   25   27   27   30   33   37   39   41   43   46   48   51 
LCS_GDT     M      65     M      65      3   23   33     4    9   15   17   20   22   24   24   26   27   29   31   33   37   39   41   43   46   48   51 
LCS_GDT     M      66     M      66      3   23   33     3    4    6    8   16   21   24   24   26   27   27   30   32   37   39   41   43   46   48   51 
LCS_GDT     P      67     P      67      5   23   33     3    4   10   16   20   22   24   24   26   27   27   30   32   37   39   41   43   46   48   51 
LCS_GDT     V      68     V      68      5   23   34     3    4   12   17   20   22   24   24   26   27   27   30   32   37   39   41   43   46   48   51 
LCS_GDT     G      69     G      69      5   23   34     3    4    5   11   17   22   24   24   26   27   27   28   32   37   39   41   43   46   48   51 
LCS_GDT     N      70     N      70      5   23   34     3    6   12   17   20   22   24   24   26   27   27   30   32   37   39   41   43   46   48   51 
LCS_GDT     G      71     G      71      5   23   34     3    4    9   14   20   22   24   24   26   27   27   30   32   37   39   41   43   46   48   51 
LCS_GDT     D      72     D      72     16   23   34     3   15   16   17   20   22   24   24   26   27   27   29   32   35   39   41   43   46   48   51 
LCS_GDT     L      73     L      73     16   23   34    14   15   16   16   18   22   24   24   26   27   27   30   32   37   39   41   43   46   48   51 
LCS_GDT     K      74     K      74     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   39   42   46   49 
LCS_GDT     A      75     A      75     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   30   32   32   34   37   42   45   49 
LCS_GDT     V      76     V      76     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   38   42   45   49 
LCS_GDT     L      77     L      77     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   38   42   45   49 
LCS_GDT     R      78     R      78     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   35   37   38   43 
LCS_GDT     K      79     K      79     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   35   37   38   43 
LCS_GDT     L      80     L      80     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   36   39   43   47 
LCS_GDT     I      81     I      81     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   35   37   43   43 
LCS_GDT     E      82     E      82     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   35   37   41   43 
LCS_GDT     D      83     D      83     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   36   42   43   47 
LCS_GDT     A      84     A      84     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   35   38   42   44   45   47 
LCS_GDT     D      85     D      85     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   36   42   43   47 
LCS_GDT     K      86     K      86     16   23   34    14   15   16   17   20   22   24   24   26   27   27   29   31   32   32   34   39   42   44   47 
LCS_GDT     E      87     E      87     16   23   34     3   10   16   17   20   22   24   24   26   27   27   29   31   34   35   41   42   44   46   47 
LCS_GDT     K      88     K      88      4   22   34     3    4    8   14   17   21   24   24   26   27   29   29   32   36   37   41   42   44   46   47 
LCS_GDT     H      89     H      89      4   19   34     3    4    7   10   15   19   21   23   26   27   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     N      90     N      90      6   11   34     3    5    7   10   12   13   17   18   22   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     F      91     F      91      6   11   34     2    5    7   10   12   13   17   20   23   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     C      92     C      92      6   11   34     3    5    7   10   12   19   21   22   23   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     M      93     M      93      6   11   34     3    5    7   10   12   13   17   21   23   26   29   31   33   36   37   41   42   46   48   51 
LCS_GDT     L      94     L      94      6   11   34     3    5    7   10   12   13   17   19   22   26   29   31   33   37   39   41   43   46   48   51 
LCS_GDT     G      95     G      95      6   11   34     3    5    6   10   12   13   14   17   19   22   27   31   33   37   39   41   43   46   48   51 
LCS_GDT     V      96     V      96      3   11   34     3    3    5   10   12   13   18   22   23   26   29   31   33   37   39   41   43   46   48   51 
LCS_GDT     C      97     C      97      3   11   34     3    3    7   10   12   13   17   19   22   26   29   31   33   36   37   41   42   44   47   51 
LCS_GDT     S      98     S      98     10   11   34    10   10   10   10   10   12   16   21   23   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     N      99     N      99     10   11   34    10   10   10   10   12   19   21   22   23   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     M     100     M     100     10   11   34    10   10   10   10   10   12   17   20   23   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     R     101     R     101     10   11   34    10   10   10   10   12   19   21   22   23   26   29   31   33   36   37   41   43   46   48   51 
LCS_GDT     A     102     A     102     10   11   34    10   10   10   10   10   12   17   19   22   26   29   31   33   36   37   41   43   46   48   51 
LCS_GDT     D     103     D     103     10   11   34    10   10   10   10   10   12   17   19   22   26   29   31   33   36   37   41   42   44   47   49 
LCS_GDT     L     104     L     104     10   11   34    10   10   10   10   10   12   17   19   22   26   29   31   33   36   37   41   42   46   48   51 
LCS_GDT     E     105     E     105     10   11   24    10   10   10   10   10   12   15   19   22   26   29   31   33   36   37   41   43   46   48   51 
LCS_GDT     A     106     A     106     10   11   24    10   10   10   10   10   12   15   19   22   24   29   31   33   36   37   41   42   44   47   50 
LCS_GDT     I     107     I     107     10   11   24    10   10   10   10   10   12   15   19   22   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     L     108     L     108      4   11   24     3    4    5    5    8   10   16   18   20   26   29   31   33   36   37   41   42   44   46   48 
LCS_GDT     P     109     P     109      4    8   24     3    4    4    5    8   10   13   17   20   23   28   31   33   36   37   41   43   46   48   51 
LCS_GDT     E     110     E     110      3    8   24     3    3    4    6    7    9   14   16   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     R     111     R     111      3    8   22     0    3    3    6    7   10   14   16   18   21   25   30   32   37   39   41   43   46   48   51 
LCS_GDT     F     112     F     112      5    8   22     0    3    5    6    7    8    9   13   17   20   23   30   32   37   39   41   43   46   48   51 
LCS_GDT     I     113     I     113      5    8   22     4    4    5    6    7    8   12   12   16   18   22   26   28   31   34   40   42   45   47   50 
LCS_GDT     F     114     F     114      5    8   22     4    4    5    6    8    9   13   17   20   23   29   31   33   37   39   41   43   46   48   51 
LCS_GDT     T     115     T     115      5    8   22     4    4    5    6    7   11   16   19   22   24   29   31   33   36   37   41   42   44   47   48 
LCS_GDT     E     116     E     116      5    8   16     4    4    5   10   11   12   17   18   20   26   29   31   33   36   37   41   42   44   47   50 
LCS_GDT     D     117     D     117      3    6   15     1    3    7   10   12   13   14   17   18   20   23   25   26   31   34   38   40   41   43   48 
LCS_GDT     K     290     K     290      3    3    9     0    3    3    3    3    3    4    5    7   11   11   12   12   12   17   22   25   26   28   28 
LCS_GDT     Y     291     Y     291      3    3    9     3    3    3    3    3    3    4    6    9   11   11   12   12   14   16   17   25   26   28   31 
LCS_GDT     M     292     M     292      3    3    9     3    3    3    3    3    6    7    7    9   11   11   12   13   14   16   18   25   26   28   32 
LCS_GDT     A     293     A     293      3    6    9     3    3    4    5    5    6    7    7    9   11   11   12   13   14   16   17   22   26   28   31 
LCS_GDT     C     294     C     294      3    6    9     3    3    4    5    5    6    7    7    9   11   11   12   12   13   16   17   21   22   23   26 
LCS_GDT     L     295     L     295      3    6    9     3    3    4    5    5    6    7    7    9   11   16   19   22   23   25   26   26   27   28   30 
LCS_GDT     K     296     K     296      3    6    9     3    3    4    5    5    6    7    7   15   15   17   19   22   23   25   26   26   27   28   31 
LCS_GDT     D     297     D     297      3    6    9     3    3    4    5    5    6    7    9   13   15   15   18   22   23   23   23   23   24   28   29 
LCS_GDT     H     298     H     298      3    6    9     3    3    4    5    5    6    7    7   15   15   17   19   22   23   25   26   26   27   28   29 
LCS_AVERAGE  LCS_A:  11.79  (   5.62    9.60   20.16 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     17     20     22     24     24     26     27     29     31     33     37     39     41     43     46     48     51 
GDT PERCENT_CA  11.11  11.90  12.70  13.49  15.87  17.46  19.05  19.05  20.63  21.43  23.02  24.60  26.19  29.37  30.95  32.54  34.13  36.51  38.10  40.48
GDT RMS_LOCAL    0.25   0.37   0.62   1.23   1.59   1.78   2.01   2.01   2.63   2.74   3.89   4.05   4.25   5.13   5.32   5.17   5.72   6.04   6.25   6.52
GDT RMS_ALL_CA  23.06  23.08  23.18  23.21  23.30  23.28  23.29  23.29  23.42  23.45  22.18  22.17  22.13  22.13  21.95  22.12  21.82  21.67  21.53  21.55

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         19.712
LGA    I       2      I       2         18.340
LGA    P       3      P       3         16.524
LGA    F       4      F       4         17.985
LGA    K       5      K       5         22.076
LGA    D       6      D       6         24.872
LGA    I       7      I       7         26.885
LGA    T       8      T       8         31.833
LGA    L       9      L       9         33.310
LGA    A      10      A      10         31.926
LGA    D      11      D      11         30.849
LGA    R      12      R      12         36.079
LGA    D      13      D      13         39.566
LGA    T      14      T      14         33.456
LGA    I      15      I      15         30.575
LGA    T      16      T      16         37.267
LGA    A      17      A      17         38.063
LGA    F      18      F      18         31.563
LGA    T      19      T      19         32.744
LGA    M      20      M      20         39.393
LGA    K      21      K      21         40.237
LGA    S      22      S      22         36.560
LGA    D      23      D      23         33.319
LGA    R      24      R      24         28.500
LGA    R      25      R      25         27.069
LGA    N      26      N      26         21.711
LGA    C      27      C      27         20.973
LGA    D      28      D      28         16.602
LGA    L      29      L      29         14.203
LGA    S      30      S      30         15.852
LGA    F      31      F      31         16.697
LGA    S      32      S      32         20.507
LGA    N      33      N      33         18.968
LGA    L      34      L      34         18.493
LGA    C      35      C      35         22.451
LGA    S      36      S      36         25.429
LGA    W      37      W      37         23.951
LGA    R      38      R      38         25.436
LGA    F      39      F      39         31.086
LGA    L      40      L      40         31.062
LGA    Y      41      Y      41         32.293
LGA    D      42      D      42         37.141
LGA    T      43      T      43         32.456
LGA    Q      44      Q      44         31.296
LGA    F      45      F      45         27.465
LGA    A      46      A      46         25.773
LGA    V      47      V      47         22.000
LGA    I      48      I      48         17.395
LGA    D      49      D      49         17.238
LGA    D      50      D      50         16.722
LGA    F      51      F      51         11.909
LGA    L      52      L      52         12.230
LGA    V      53      V      53         10.143
LGA    F      54      F      54          9.890
LGA    K      55      K      55         11.472
LGA    F      56      F      56         10.081
LGA    W      57      W      57         13.433
LGA    A      58      A      58         15.203
LGA    G      59      G      59         20.197
LGA    E      60      E      60         21.617
LGA    Q      61      Q      61         17.135
LGA    L      62      L      62         11.753
LGA    A      63      A      63          7.471
LGA    Y      64      Y      64          5.341
LGA    M      65      M      65          1.273
LGA    M      66      M      66          3.290
LGA    P      67      P      67          2.331
LGA    V      68      V      68          1.808
LGA    G      69      G      69          2.888
LGA    N      70      N      70          1.194
LGA    G      71      G      71          2.468
LGA    D      72      D      72          2.220
LGA    L      73      L      73          3.239
LGA    K      74      K      74          2.286
LGA    A      75      A      75          0.598
LGA    V      76      V      76          1.379
LGA    L      77      L      77          1.659
LGA    R      78      R      78          1.242
LGA    K      79      K      79          0.600
LGA    L      80      L      80          0.577
LGA    I      81      I      81          1.296
LGA    E      82      E      82          1.600
LGA    D      83      D      83          1.045
LGA    A      84      A      84          0.553
LGA    D      85      D      85          2.183
LGA    K      86      K      86          2.434
LGA    E      87      E      87          1.720
LGA    K      88      K      88          3.532
LGA    H      89      H      89          7.330
LGA    N      90      N      90         13.680
LGA    F      91      F      91         11.144
LGA    C      92      C      92         13.223
LGA    M      93      M      93         10.965
LGA    L      94      L      94         14.069
LGA    G      95      G      95         17.229
LGA    V      96      V      96         18.107
LGA    C      97      C      97         19.877
LGA    S      98      S      98         21.731
LGA    N      99      N      99         23.228
LGA    M     100      M     100         21.119
LGA    R     101      R     101         22.706
LGA    A     102      A     102         27.116
LGA    D     103      D     103         27.222
LGA    L     104      L     104         26.383
LGA    E     105      E     105         29.597
LGA    A     106      A     106         33.063
LGA    I     107      I     107         32.729
LGA    L     108      L     108         34.189
LGA    P     109      P     109         38.077
LGA    E     110      E     110         37.952
LGA    R     111      R     111         32.848
LGA    F     112      F     112         29.993
LGA    I     113      I     113         30.294
LGA    F     114      F     114         28.741
LGA    T     115      T     115         28.432
LGA    E     116      E     116         30.809
LGA    D     117      D     117         34.833
LGA    K     290      K     290         23.058
LGA    Y     291      Y     291         24.024
LGA    M     292      M     292         20.534
LGA    A     293      A     293         25.565
LGA    C     294      C     294         28.028
LGA    L     295      L     295         28.352
LGA    K     296      K     296         30.132
LGA    D     297      D     297         31.997
LGA    H     298      H     298         37.386

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     24    2.01    19.246    16.908     1.139

LGA_LOCAL      RMSD =  2.007  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.292  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 18.706  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.254386 * X  +   0.901467 * Y  +  -0.350208 * Z  +  31.785707
  Y_new =  -0.951544 * X  +  -0.298000 * Y  +  -0.075893 * Z  +  44.282040
  Z_new =  -0.172777 * X  +   0.313932 * Y  +   0.933592 * Z  +   1.774564 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.324384   -2.817209  [ DEG:    18.5858   -161.4142 ]
  Theta =   0.173648    2.967944  [ DEG:     9.9493    170.0507 ]
  Phi   =  -1.832027    1.309565  [ DEG:  -104.9674     75.0326 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS168_2-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS168_2-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   24   2.01  16.908    18.71
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS168_2-D1
PFRMAT TS
TARGET T0372
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      62.914  47.941 -12.118  1.00 25.00           C
ATOM      2  CA  ILE     2      59.430  48.747 -13.594  1.00 25.00           C
ATOM      3  CA  PRO     3      60.661  52.247 -14.289  1.00 25.00           C
ATOM      4  CA  PHE     4      58.236  54.299 -16.444  1.00 25.00           C
ATOM      5  CA  LYS     5      57.874  53.986 -20.274  1.00 25.00           C
ATOM      6  CA  ASP     6      57.622  50.273 -21.235  1.00 25.00           C
ATOM      7  CA  ILE     7      54.062  49.064 -20.495  1.00 25.00           C
ATOM      8  CA  THR     8      51.684  49.760 -23.354  1.00 25.00           C
ATOM      9  CA  LEU     9      48.962  51.092 -21.045  1.00 25.00           C
ATOM     10  CA  ALA    10      48.746  47.493 -19.756  1.00 25.00           C
ATOM     11  CA  ASP    11      46.456  44.553 -19.016  1.00 25.00           C
ATOM     12  CA  ARG    12      44.529  46.468 -21.717  1.00 25.00           C
ATOM     13  CA  ASP    13      42.508  43.321 -22.539  1.00 25.00           C
ATOM     14  CA  THR    14      41.708  42.833 -18.826  1.00 25.00           C
ATOM     15  CA  ILE    15      40.578  46.483 -18.565  1.00 25.00           C
ATOM     16  CA  THR    16      38.342  46.037 -21.642  1.00 25.00           C
ATOM     17  CA  ALA    17      36.819  42.876 -20.107  1.00 25.00           C
ATOM     18  CA  PHE    18      36.155  44.754 -16.836  1.00 25.00           C
ATOM     19  CA  THR    19      34.480  47.597 -18.780  1.00 25.00           C
ATOM     20  CA  MET    20      32.296  45.064 -20.648  1.00 25.00           C
ATOM     21  CA  LYS    21      29.915  47.551 -22.352  1.00 25.00           C
ATOM     22  CA  SER    22      26.487  49.116 -21.740  1.00 25.00           C
ATOM     23  CA  ASP    23      25.125  50.724 -18.577  1.00 25.00           C
ATOM     24  CA  ARG    24      23.672  50.937 -15.119  1.00 25.00           C
ATOM     25  CA  ARG    25      24.253  50.242 -11.462  1.00 25.00           C
ATOM     26  CA  ASN    26      24.508  49.262  -7.794  1.00 25.00           C
ATOM     27  CA  CYS    27      27.418  50.246  -5.548  1.00 25.00           C
ATOM     28  CA  ASP    28      26.790  52.107  -2.347  1.00 25.00           C
ATOM     29  CA  LEU    29      26.840  51.158   1.380  1.00 25.00           C
ATOM     30  CA  SER    30      30.134  49.206   1.322  1.00 25.00           C
ATOM     31  CA  PHE    31      30.881  45.835   3.018  1.00 25.00           C
ATOM     32  CA  SER    32      30.933  44.100  -0.396  1.00 25.00           C
ATOM     33  CA  ASN    33      27.576  42.427   0.374  1.00 25.00           C
ATOM     34  CA  LEU    34      26.096  45.811   1.392  1.00 25.00           C
ATOM     35  CA  CYS    35      27.374  47.376  -1.861  1.00 25.00           C
ATOM     36  CA  SER    36      25.816  44.518  -3.878  1.00 25.00           C
ATOM     37  CA  TRP    37      22.486  45.013  -2.053  1.00 25.00           C
ATOM     38  CA  ARG    38      22.607  48.766  -2.798  1.00 25.00           C
ATOM     39  CA  PHE    39      19.084  48.255  -4.056  1.00 25.00           C
ATOM     40  CA  LEU    40      15.390  47.156  -4.259  1.00 25.00           C
ATOM     41  CA  TYR    41      11.650  46.419  -4.691  1.00 25.00           C
ATOM     42  CA  ASP    42       9.060  45.633  -2.099  1.00 25.00           C
ATOM     43  CA  THR    43      12.047  45.047   0.255  1.00 25.00           C
ATOM     44  CA  GLN    44      14.118  47.432   2.373  1.00 25.00           C
ATOM     45  CA  PHE    45      17.058  49.338   3.856  1.00 25.00           C
ATOM     46  CA  ALA    46      19.072  52.326   2.830  1.00 25.00           C
ATOM     47  CA  VAL    47      22.168  53.998   1.432  1.00 25.00           C
ATOM     48  CA  ILE    48      25.416  56.018   1.632  1.00 25.00           C
ATOM     49  CA  ASP    49      24.201  58.946   3.768  1.00 25.00           C
ATOM     50  CA  ASP    50      25.542  57.387   7.036  1.00 25.00           C
ATOM     51  CA  PHE    51      28.979  55.787   7.435  1.00 25.00           C
ATOM     52  CA  LEU    52      30.406  52.611   8.972  1.00 25.00           C
ATOM     53  CA  VAL    53      31.480  50.643   5.925  1.00 25.00           C
ATOM     54  CA  PHE    54      33.407  48.399   8.340  1.00 25.00           C
ATOM     55  CA  LYS    55      33.575  44.774   7.247  1.00 25.00           C
ATOM     56  CA  PHE    56      36.672  44.773   9.484  1.00 25.00           C
ATOM     57  CA  TRP    57      39.822  43.983  11.554  1.00 25.00           C
ATOM     58  CA  ALA    58      42.631  43.108  14.021  1.00 25.00           C
ATOM     59  CA  GLY    59      45.738  45.008  15.154  1.00 25.00           C
ATOM     60  CA  GLU    60      46.521  46.853  11.876  1.00 25.00           C
ATOM     61  CA  GLN    61      44.925  47.037   8.428  1.00 25.00           C
ATOM     62  CA  LEU    62      43.161  46.177   5.160  1.00 25.00           C
ATOM     63  CA  ALA    63      39.567  46.594   4.084  1.00 25.00           C
ATOM     64  CA  TYR    64      36.357  48.554   4.187  1.00 25.00           C
ATOM     65  CA  MET    65      35.204  51.936   2.922  1.00 25.00           C
ATOM     66  CA  MET    66      33.712  52.715  -0.452  1.00 25.00           C
ATOM     67  CA  PRO    67      32.569  55.948   1.287  1.00 25.00           C
ATOM     68  CA  VAL    68      34.012  57.651   4.409  1.00 25.00           C
ATOM     69  CA  GLY    69      33.660  61.295   3.372  1.00 25.00           C
ATOM     70  CA  ASN    70      32.493  64.944   3.449  1.00 25.00           C
ATOM     71  CA  GLY    71      30.760  67.039   0.779  1.00 25.00           C
ATOM     72  CA  ASP    72      33.609  67.296  -1.685  1.00 25.00           C
ATOM     73  CA  LEU    73      33.870  63.465  -1.350  1.00 25.00           C
ATOM     74  CA  LYS    74      31.334  62.448  -4.034  1.00 25.00           C
ATOM     75  CA  ALA    75      33.941  63.073  -6.769  1.00 25.00           C
ATOM     76  CA  VAL    76      36.490  60.946  -4.861  1.00 25.00           C
ATOM     77  CA  LEU    77      33.918  58.130  -4.513  1.00 25.00           C
ATOM     78  CA  ARG    78      33.181  58.307  -8.268  1.00 25.00           C
ATOM     79  CA  LYS    79      36.929  58.133  -9.037  1.00 25.00           C
ATOM     80  CA  LEU    80      37.283  55.089  -6.741  1.00 25.00           C
ATOM     81  CA  ILE    81      34.332  53.391  -8.494  1.00 25.00           C
ATOM     82  CA  GLU    82      35.922  54.097 -11.906  1.00 25.00           C
ATOM     83  CA  ASP    83      39.240  52.621 -10.693  1.00 25.00           C
ATOM     84  CA  ALA    84      37.417  49.500  -9.427  1.00 25.00           C
ATOM     85  CA  ASP    85      35.651  49.132 -12.806  1.00 25.00           C
ATOM     86  CA  LYS    86      39.007  49.452 -14.623  1.00 25.00           C
ATOM     87  CA  GLU    87      41.572  48.192 -12.123  1.00 25.00           C
ATOM     88  CA  LYS    88      41.825  44.467 -12.871  1.00 25.00           C
ATOM     89  CA  HIS    89      42.995  42.864  -9.567  1.00 25.00           C
ATOM     90  CA  ASN    90      45.307  42.851  -6.537  1.00 25.00           C
ATOM     91  CA  PHE    91      42.526  44.746  -4.800  1.00 25.00           C
ATOM     92  CA  CYS    92      44.497  47.920  -5.442  1.00 25.00           C
ATOM     93  CA  MET    93      41.977  50.388  -4.052  1.00 25.00           C
ATOM     94  CA  LEU    94      41.574  54.044  -4.931  1.00 25.00           C
ATOM     95  CA  GLY    95      42.649  57.136  -2.975  1.00 25.00           C
ATOM     96  CA  VAL    96      43.288  58.827   0.340  1.00 25.00           C
ATOM     97  CA  CYS    97      41.961  61.406   2.876  1.00 25.00           C
ATOM     98  CA  SER    98      41.488  60.985   6.613  1.00 25.00           C
ATOM     99  CA  ASN    99      44.729  62.016   8.374  1.00 25.00           C
ATOM    100  CA  MET   100      45.780  58.342   8.640  1.00 25.00           C
ATOM    101  CA  ARG   101      45.060  57.841   4.913  1.00 25.00           C
ATOM    102  CA  ALA   102      47.144  60.941   4.068  1.00 25.00           C
ATOM    103  CA  ASP   103      50.027  59.619   6.214  1.00 25.00           C
ATOM    104  CA  LEU   104      49.828  56.231   4.440  1.00 25.00           C
ATOM    105  CA  GLU   105      49.900  57.984   1.035  1.00 25.00           C
ATOM    106  CA  ALA   106      52.959  60.016   2.118  1.00 25.00           C
ATOM    107  CA  ILE   107      54.710  56.812   3.272  1.00 25.00           C
ATOM    108  CA  LEU   108      54.307  57.083   7.084  1.00 25.00           C
ATOM    109  CA  PRO   109      54.324  60.827   7.958  1.00 25.00           C
ATOM    110  CA  GLU   110      51.874  63.683   7.711  1.00 25.00           C
ATOM    111  CA  ARG   111      48.679  65.525   6.671  1.00 25.00           C
ATOM    112  CA  PHE   112      45.300  67.032   5.941  1.00 25.00           C
ATOM    113  CA  ILE   113      44.899  65.582   2.465  1.00 25.00           C
ATOM    114  CA  PHE   114      45.724  63.286  -0.473  1.00 25.00           C
ATOM    115  CA  THR   115      43.929  61.934  -3.583  1.00 25.00           C
ATOM    116  CA  GLU   116      45.679  60.682  -6.750  1.00 25.00           C
ATOM    117  CA  ASP   117      49.413  60.549  -6.013  1.00 25.00           C
ATOM    290  CA  LYS   290      32.375  25.709  14.759  1.00 25.00           C
ATOM    291  CA  TYR   291      30.101  24.776  11.821  1.00 25.00           C
ATOM    292  CA  MET   292      30.563  28.269  10.323  1.00 25.00           C
ATOM    293  CA  ALA   293      34.362  27.951  10.689  1.00 25.00           C
ATOM    294  CA  CYS   294      34.266  24.530   8.970  1.00 25.00           C
ATOM    295  CA  LEU   295      32.186  25.999   6.109  1.00 25.00           C
ATOM    296  CA  LYS   296      32.455  23.272   3.482  1.00 25.00           C
ATOM    297  CA  ASP   297      33.545  20.593   1.029  1.00 25.00           C
ATOM    298  CA  HIS   298      35.531  19.181   3.966  1.00 25.00           C
TER
END
