
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS168_3-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS168_3-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        52 - 93          4.98    17.20
  LONGEST_CONTINUOUS_SEGMENT:    42        53 - 94          4.87    17.07
  LCS_AVERAGE:     22.92

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        72 - 92          1.90    17.73
  LCS_AVERAGE:      9.18

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        73 - 89          0.74    17.70
  LCS_AVERAGE:      6.21

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      3    8   16     3    4    5    7    7    9   10   11   12   16   16   20   25   26   30   34   36   38   41   48 
LCS_GDT     I       2     I       2      5    8   16     4    5    5    7    7    9   10   11   12   18   20   21   25   27   33   38   42   43   45   63 
LCS_GDT     P       3     P       3      5    8   16     4    5    5    7    7    9   10   11   12   18   22   24   26   31   33   38   42   43   45   48 
LCS_GDT     F       4     F       4      5    8   17     4    5    5    7    7    9   10   11   12   18   22   24   26   29   33   38   42   43   45   48 
LCS_GDT     K       5     K       5      5    8   20     4    5    5    7    7    9   10   11   14   19   22   24   26   32   36   38   42   43   45   48 
LCS_GDT     D       6     D       6      5    8   21     3    5    5    7    7    9   10   11   12   15   20   24   26   30   36   38   42   43   45   47 
LCS_GDT     I       7     I       7      3    8   21     3    4    5    7    7    9   10   13   21   23   24   27   32   35   37   38   42   43   45   48 
LCS_GDT     T       8     T       8      3    8   21     1    3    4    7    7    9   13   15   21   23   24   28   32   35   37   38   42   51   53   57 
LCS_GDT     L       9     L       9      3    7   21     3    3    5    5    6    9   12   14   18   21   24   28   30   32   35   38   40   44   53   56 
LCS_GDT     A      10     A      10      6   12   21     3    3    7    9   10   11   13   14   16   20   23   24   29   40   44   49   52   53   55   63 
LCS_GDT     D      11     D      11     10   12   21     5    9    9   10   10   12   13   15   17   17   23   24   27   40   44   49   52   53   57   63 
LCS_GDT     R      12     R      12     10   12   21     5    9    9   10   10   12   13   15   17   17   23   24   27   29   44   46   52   53   55   63 
LCS_GDT     D      13     D      13     10   12   21     5    9    9   10   10   12   13   15   16   20   23   24   32   40   44   49   52   53   57   63 
LCS_GDT     T      14     T      14     10   12   21     5    9    9   10   10   12   13   15   16   20   26   28   32   40   44   49   52   55   58   63 
LCS_GDT     I      15     I      15     10   12   21     5    9    9   10   10   12   13   15   16   20   26   28   37   40   44   49   52   55   58   63 
LCS_GDT     T      16     T      16     10   12   21     5    9    9   10   10   12   13   15   16   17   26   28   34   40   44   49   52   53   57   63 
LCS_GDT     A      17     A      17     10   12   25     4    9    9   10   10   12   13   15   16   18   26   28   37   40   44   49   52   55   58   63 
LCS_GDT     F      18     F      18     10   12   25     4    9    9   10   10   12   13   14   16   18   26   29   37   40   44   49   52   55   58   63 
LCS_GDT     T      19     T      19     10   12   25     4    9    9   10   10   12   13   15   16   17   26   28   37   40   44   49   52   53   57   60 
LCS_GDT     M      20     M      20     10   12   25     3    7    9   10   10   12   13   15   16   17   26   28   37   40   44   49   52   53   57   63 
LCS_GDT     K      21     K      21      6   12   25     3    5    7    9   10   12   13   15   16   17   23   24   32   40   44   49   52   53   55   57 
LCS_GDT     S      22     S      22      6    8   25     3    4    6    8   10   12   13   15   16   17   20   21   23   35   39   49   52   53   54   57 
LCS_GDT     D      23     D      23      6    8   25     3    5    6    8   10   12   13   15   16   17   20   21   23   35   43   49   52   53   55   57 
LCS_GDT     R      24     R      24      6    8   25     3    5    6    8   10   12   13   15   16   28   29   29   34   39   44   49   52   53   55   57 
LCS_GDT     R      25     R      25      6    8   25     3    5    6    8   10   14   17   19   25   28   29   30   37   40   44   49   52   53   57   63 
LCS_GDT     N      26     N      26      4    8   25     3    4    4    7   11   14   17   19   25   28   29   30   37   40   44   49   52   55   58   63 
LCS_GDT     C      27     C      27      4    8   25     3    4    5    8    9   12   16   21   23   27   28   33   36   42   47   49   52   55   58   63 
LCS_GDT     D      28     D      28      4    6   25     4    5    5    5    6    8    9   13   14   24   24   28   36   40   47   49   52   56   59   62 
LCS_GDT     L      29     L      29      4    5   25     9   15   17   20   22   24   26   28   30   33   36   38   42   44   47   52   55   58   61   62 
LCS_GDT     S      30     S      30      4    9   25     4    6   10   15   18   23   26   28   30   33   36   38   42   44   48   52   55   58   61   62 
LCS_GDT     F      31     F      31      8    9   25     6    8    8    8   11   18   21   25   29   31   34   38   41   44   48   52   55   58   61   62 
LCS_GDT     S      32     S      32      8    9   25     6    8    8    8   10   12   13   15   15   17   20   21   37   44   48   52   55   58   61   62 
LCS_GDT     N      33     N      33      8    9   25     6    8    8    8   10   12   13   15   15   15   26   30   37   44   48   52   55   58   61   62 
LCS_GDT     L      34     L      34      8    9   25     6    8    8    8   10   12   14   18   21   26   31   36   38   44   48   51   55   58   61   62 
LCS_GDT     C      35     C      35      8    9   25     6    8    8    8   10   12   13   16   17   22   26   31   36   41   45   49   53   56   59   61 
LCS_GDT     S      36     S      36      8    9   25     6    8    8    8   10   12   13   15   15   16   20   26   29   34   37   41   44   47   49   55 
LCS_GDT     W      37     W      37      8    9   25     5    8    8    8   10   12   13   15   15   17   20   26   29   34   37   41   44   46   49   52 
LCS_GDT     R      38     R      38      8    9   25     5    8    8    8   10   12   13   15   15   17   20   21   23   26   28   31   36   43   47   49 
LCS_GDT     F      39     F      39      3    6   25     3    3    4    4    6    9   13   15   15   17   20   21   23   26   28   31   35   37   47   49 
LCS_GDT     L      40     L      40      3    6   25     3    3    4    4    6    9   13   15   15   17   20   21   23   26   28   31   35   41   47   49 
LCS_GDT     Y      41     Y      41      3    6   25     3    3    4    7   10   12   13   15   16   16   19   20   22   26   28   31   35   37   39   44 
LCS_GDT     D      42     D      42      3   10   23     3    3    4    7   10   12   13   15   16   16   19   20   21   26   28   31   35   37   39   41 
LCS_GDT     T      43     T      43      4   10   21     3    4    5    8   10   11   13   15   16   16   17   20   21   26   28   31   35   37   39   41 
LCS_GDT     Q      44     Q      44      4   10   21     3    4    4    8   10   12   13   15   16   16   17   18   19   26   28   31   35   37   39   41 
LCS_GDT     F      45     F      45      4   10   21     3    4    5    8   10   12   13   15   16   16   17   18   21   26   28   31   35   37   39   41 
LCS_GDT     A      46     A      46      4   10   21     3    4    5    7   10   11   13   15   16   16   17   18   21   26   28   31   35   37   39   41 
LCS_GDT     V      47     V      47      4   10   21     3    4    5    8   10   11   13   14   16   16   17   18   20   26   28   31   35   37   39   41 
LCS_GDT     I      48     I      48      4   10   21     4    4    5    8   10   11   13   15   16   16   17   19   20   26   28   31   35   37   39   41 
LCS_GDT     D      49     D      49      4   10   21     4    4    5    8   10   11   13   15   16   16   17   19   21   26   28   31   35   37   39   41 
LCS_GDT     D      50     D      50      4   10   21     4    4    5    8   10   11   13   15   16   16   17   18   21   26   28   31   35   37   39   41 
LCS_GDT     F      51     F      51      4   10   28     4    4    5    8   10   11   13   15   16   16   17   19   21   26   28   31   35   37   41   44 
LCS_GDT     L      52     L      52      6   10   42     3    5    6    7    9   13   14   15   17   19   25   29   32   38   42   45   49   53   55   57 
LCS_GDT     V      53     V      53      6   10   42     3    5    6    7    9   18   20   22   27   31   33   38   42   44   46   50   54   58   61   62 
LCS_GDT     F      54     F      54      6   10   42     3    5    6    8   19   24   26   28   30   33   36   38   42   44   48   52   55   58   61   62 
LCS_GDT     K      55     K      55      6   10   42     3    4    6    7    9   13   14   22   28   31   34   38   42   44   48   52   55   58   61   62 
LCS_GDT     F      56     F      56      6   10   42     3    5    6    7   15   19   22   25   27   30   34   37   41   44   47   52   55   58   61   63 
LCS_GDT     W      57     W      57      6   10   42     3    4    6    7   11   14   18   22   25   30   34   36   40   44   47   51   55   58   61   63 
LCS_GDT     A      58     A      58      5   10   42     3    5    6    7   10   13   17   21   24   29   34   36   38   41   44   49   52   54   58   63 
LCS_GDT     G      59     G      59      5   10   42     3    4    5    7   10   13   16   21   25   29   34   36   38   41   43   49   52   54   58   63 
LCS_GDT     E      60     E      60      5   10   42     3    4    5    7   10   13   17   22   25   30   34   36   38   44   46   51   55   58   61   63 
LCS_GDT     Q      61     Q      61      5   10   42     0    4    5    7   10   13   18   22   25   30   34   36   40   44   47   52   55   58   61   63 
LCS_GDT     L      62     L      62      5    9   42     3    4    6   12   17   22   24   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     A      63     A      63      5    8   42     3    4    6   16   19   23   25   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     Y      64     Y      64      5    7   42     3   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     M      65     M      65      5    7   42     3    4    5    8   15   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     M      66     M      66      4    8   42     3   14   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     P      67     P      67      5    8   42     3   14   16   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     V      68     V      68      5    8   42     3    4    5    7   11   15   19   25   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     G      69     G      69      5    8   42     3    4    5    7    7   10   16   21   28   31   35   38   42   44   48   52   55   58   61   63 
LCS_GDT     N      70     N      70      5    8   42     3    4    5    7   11   17   20   26   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     G      71     G      71      5   19   42     0    3    5   11   17   20   24   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     D      72     D      72     16   21   42     3    3   16   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     L      73     L      73     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     K      74     K      74     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     A      75     A      75     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     V      76     V      76     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     L      77     L      77     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     R      78     R      78     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     K      79     K      79     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     L      80     L      80     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     I      81     I      81     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     E      82     E      82     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     D      83     D      83     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     A      84     A      84     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     D      85     D      85     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     K      86     K      86     17   21   42    14   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     E      87     E      87     17   21   42     3    3   13   19   22   24   26   27   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     K      88     K      88     17   21   42     3    3    8   20   22   24   26   27   30   32   36   38   41   44   48   51   55   58   61   63 
LCS_GDT     H      89     H      89     17   21   42    10   16   17   20   22   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     N      90     N      90      3   21   42     3    3    5    8   16   21   24   27   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     F      91     F      91      5   21   42     3    4    6   10   13   17   22   25   28   31   34   38   42   44   48   52   55   58   61   63 
LCS_GDT     C      92     C      92      5   21   42     3    4   11   19   21   24   26   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     M      93     M      93      6   15   42     3    4    6   10   13   18   22   28   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     L      94     L      94      6   15   42     3    5   10   13   13   14   15   16   21   28   32   37   40   44   48   52   55   58   61   63 
LCS_GDT     G      95     G      95     13   15   37     3    5    6   13   13   14   14   16   21   23   26   30   34   39   44   52   55   58   61   63 
LCS_GDT     V      96     V      96     13   15   36     3   11   12   13   13   14   15   16   21   23   26   31   36   39   44   50   55   58   61   62 
LCS_GDT     C      97     C      97     13   15   34     3   11   12   13   13   14   15   16   21   23   24   28   32   35   37   41   46   48   52   55 
LCS_GDT     S      98     S      98     13   15   27    10   11   12   13   13   14   15   16   18   21   24   28   32   35   38   41   46   48   52   55 
LCS_GDT     N      99     N      99     13   15   27    10   11   12   13   13   14   15   16   18   21   24   28   32   35   37   41   44   48   52   53 
LCS_GDT     M     100     M     100     13   15   27    10   11   12   13   13   14   15   16   21   23   24   28   33   38   42   49   53   58   61   62 
LCS_GDT     R     101     R     101     13   15   27    10   11   12   13   13   14   19   21   27   28   32   36   40   44   48   52   55   58   61   62 
LCS_GDT     A     102     A     102     13   15   27    10   11   12   13   13   14   15   20   22   26   31   36   39   44   48   52   55   58   61   62 
LCS_GDT     D     103     D     103     13   15   27    10   11   12   13   13   14   15   16   21   23   24   28   32   36   47   52   55   58   61   62 
LCS_GDT     L     104     L     104     13   15   27    10   11   12   13   13   14   15   16   21   27   30   38   42   44   48   52   55   58   61   63 
LCS_GDT     E     105     E     105     13   15   27    10   11   12   13   13   14   15   16   21   32   35   38   42   44   48   52   55   58   61   63 
LCS_GDT     A     106     A     106     13   15   27    10   11   12   13   13   14   15   16   21   23   28   32   35   41   47   52   55   58   61   62 
LCS_GDT     I     107     I     107     13   15   27    10   11   12   13   13   14   15   16   18   20   22   25   29   33   36   40   46   51   53   58 
LCS_GDT     L     108     L     108      5   15   27     4    4    5    8   10   12   15   16   21   23   25   35   39   41   44   49   52   56   59   63 
LCS_GDT     P     109     P     109      5    8   27     4    5    6    6    7   10   13   15   21   28   31   35   40   44   48   52   55   58   61   63 
LCS_GDT     E     110     E     110      5    8   25     4    5    6    6    7   10   14   23   28   31   35   38   42   44   48   52   55   58   61   63 
LCS_GDT     R     111     R     111      4    8   25     3    5    6    8    9   14   19   24   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     F     112     F     112      4    8   20     3    5    6    8   12   17   20   25   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     I     113     I     113      4    8   20     3    4    5    8    8   12   21   25   30   33   36   38   42   44   48   52   55   58   61   63 
LCS_GDT     F     114     F     114      4    8   20     3    4    5    8    8   10   14   16   21   29   34   37   40   44   48   52   55   58   61   63 
LCS_GDT     T     115     T     115      3    8   20     3    3    5    8    8   10   13   15   16   21   24   28   32   36   41   46   49   52   55   58 
LCS_GDT     E     116     E     116      3    8   17     3    3    5    6    7   11   13   15   16   21   23   27   32   35   37   41   47   49   52   56 
LCS_GDT     D     117     D     117      3    5   14     3    3    3    4    5    7    8   13   14   18   21   21   24   29   32   36   41   45   50   51 
LCS_GDT     K     290     K     290      3    3    9     0    3    3    3    3    3    4    5    6    8    9    9   10   11   12   12   14   14   21   25 
LCS_GDT     Y     291     Y     291      3    3    9     3    3    3    3    3    3    4    6    6    8    9    9   10   11   11   14   20   23   26   26 
LCS_GDT     M     292     M     292      3    3    9     3    3    3    3    3    4    6    7    7    8    9    9   10   11   12   12   14   14   14   19 
LCS_GDT     A     293     A     293      3    6    9     3    3    4    4    4    6    6    7    7    8    9    9   10   11   12   12   14   15   16   19 
LCS_GDT     C     294     C     294      5    6    9     0    4    5    5    5    6    6    7    7    8    9    9   10   13   14   18   19   20   22   25 
LCS_GDT     L     295     L     295      5    6    9     2    4    5    5    5    6    6    7    9   10   12   12   13   14   15   18   19   21   24   25 
LCS_GDT     K     296     K     296      5    6    9     3    4    5    5    5    6    6    7    7    8   12   12   13   14   15   18   21   22   24   27 
LCS_GDT     D     297     D     297      5    6    9     3    4    5    5    5    6    6    7    9   10   12   12   13   14   15   18   19   21   24   27 
LCS_GDT     H     298     H     298      5    6    9     3    4    5    5    5    6    6    7    7    8    9    9   15   16   17   18   19   21   24   27 
LCS_AVERAGE  LCS_A:  12.77  (   6.21    9.18   22.92 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     16     17     20     22     24     26     28     30     33     36     38     42     44     48     52     55     58     61     63 
GDT PERCENT_CA  11.11  12.70  13.49  15.87  17.46  19.05  20.63  22.22  23.81  26.19  28.57  30.16  33.33  34.92  38.10  41.27  43.65  46.03  48.41  50.00
GDT RMS_LOCAL    0.25   0.41   0.58   0.97   1.22   1.43   1.79   2.45   2.55   3.19   3.44   3.63   4.09   4.24   4.86   5.40   5.64   5.92   6.16   7.54
GDT RMS_ALL_CA  17.65  17.64  17.66  17.62  17.57  17.59  17.62  17.38  17.39  17.39  17.36  17.31  17.37  17.45  17.54  17.41  17.42  17.54  17.46  17.13

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         24.161
LGA    I       2      I       2         22.475
LGA    P       3      P       3         25.051
LGA    F       4      F       4         24.369
LGA    K       5      K       5         28.026
LGA    D       6      D       6         29.777
LGA    I       7      I       7         28.633
LGA    T       8      T       8         29.037
LGA    L       9      L       9         29.436
LGA    A      10      A      10         25.360
LGA    D      11      D      11         21.223
LGA    R      12      R      12         22.867
LGA    D      13      D      13         21.997
LGA    T      14      T      14         16.865
LGA    I      15      I      15         15.867
LGA    T      16      T      16         19.240
LGA    A      17      A      17         16.512
LGA    F      18      F      18         13.460
LGA    T      19      T      19         16.261
LGA    M      20      M      20         18.613
LGA    K      21      K      21         20.981
LGA    S      22      S      22         21.364
LGA    D      23      D      23         23.014
LGA    R      24      R      24         19.275
LGA    R      25      R      25         18.088
LGA    N      26      N      26         15.948
LGA    C      27      C      27         12.395
LGA    D      28      D      28          9.972
LGA    L      29      L      29          3.329
LGA    S      30      S      30          1.410
LGA    F      31      F      31          8.631
LGA    S      32      S      32         10.846
LGA    N      33      N      33         12.230
LGA    L      34      L      34         13.117
LGA    C      35      C      35         15.868
LGA    S      36      S      36         19.523
LGA    W      37      W      37         21.128
LGA    R      38      R      38         23.345
LGA    F      39      F      39         26.779
LGA    L      40      L      40         26.771
LGA    Y      41      Y      41         29.041
LGA    D      42      D      42         30.614
LGA    T      43      T      43         25.096
LGA    Q      44      Q      44         24.051
LGA    F      45      F      45         21.417
LGA    A      46      A      46         23.065
LGA    V      47      V      47         22.891
LGA    I      48      I      48         23.470
LGA    D      49      D      49         26.157
LGA    D      50      D      50         24.195
LGA    F      51      F      51         17.419
LGA    L      52      L      52         10.821
LGA    V      53      V      53          6.312
LGA    F      54      F      54          3.685
LGA    K      55      K      55          6.006
LGA    F      56      F      56          7.969
LGA    W      57      W      57         11.150
LGA    A      58      A      58         13.852
LGA    G      59      G      59         13.967
LGA    E      60      E      60         11.804
LGA    Q      61      Q      61          9.912
LGA    L      62      L      62          3.925
LGA    A      63      A      63          3.928
LGA    Y      64      Y      64          2.222
LGA    M      65      M      65          2.717
LGA    M      66      M      66          3.258
LGA    P      67      P      67          1.561
LGA    V      68      V      68          5.302
LGA    G      69      G      69          7.561
LGA    N      70      N      70          5.373
LGA    G      71      G      71          3.886
LGA    D      72      D      72          1.915
LGA    L      73      L      73          3.636
LGA    K      74      K      74          2.684
LGA    A      75      A      75          1.409
LGA    V      76      V      76          1.543
LGA    L      77      L      77          1.589
LGA    R      78      R      78          1.274
LGA    K      79      K      79          0.784
LGA    L      80      L      80          0.666
LGA    I      81      I      81          1.842
LGA    E      82      E      82          2.215
LGA    D      83      D      83          1.802
LGA    A      84      A      84          2.064
LGA    D      85      D      85          3.520
LGA    K      86      K      86          3.679
LGA    E      87      E      87          5.182
LGA    K      88      K      88          5.631
LGA    H      89      H      89          3.445
LGA    N      90      N      90          4.881
LGA    F      91      F      91          6.252
LGA    C      92      C      92          1.353
LGA    M      93      M      93          3.499
LGA    L      94      L      94          7.968
LGA    G      95      G      95         11.842
LGA    V      96      V      96         12.555
LGA    C      97      C      97         17.978
LGA    S      98      S      98         19.752
LGA    N      99      N      99         20.101
LGA    M     100      M     100         14.751
LGA    R     101      R     101         10.778
LGA    A     102      A     102         12.813
LGA    D     103      D     103         14.111
LGA    L     104      L     104          8.587
LGA    E     105      E     105          6.972
LGA    A     106      A     106         12.548
LGA    I     107      I     107         15.008
LGA    L     108      L     108         11.472
LGA    P     109      P     109         10.646
LGA    E     110      E     110          8.915
LGA    R     111      R     111          6.258
LGA    F     112      F     112          5.586
LGA    I     113      I     113          4.928
LGA    F     114      F     114          7.214
LGA    T     115      T     115         12.501
LGA    E     116      E     116         17.144
LGA    D     117      D     117         23.148
LGA    K     290      K     290         24.137
LGA    Y     291      Y     291         26.747
LGA    M     292      M     292         29.358
LGA    A     293      A     293         31.469
LGA    C     294      C     294         28.729
LGA    L     295      L     295         33.969
LGA    K     296      K     296         34.032
LGA    D     297      D     297         36.914
LGA    H     298      H     298         38.411

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     28    2.45    23.016    19.258     1.098

LGA_LOCAL      RMSD =  2.450  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.393  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 16.205  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.843123 * X  +  -0.132226 * Y  +   0.521209 * Z  +  38.973053
  Y_new =  -0.234951 * X  +  -0.781283 * Y  +  -0.578269 * Z  +  47.243099
  Z_new =   0.483674 * X  +  -0.610011 * Y  +   0.627651 * Z  +   4.202122 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.771146    2.370447  [ DEG:   -44.1834    135.8166 ]
  Theta =  -0.504848   -2.636745  [ DEG:   -28.9256   -151.0744 ]
  Phi   =  -2.869820    0.271773  [ DEG:  -164.4286     15.5714 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS168_3-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS168_3-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   28   2.45  19.258    16.21
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS168_3-D1
PFRMAT TS
TARGET T0372
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      30.216  61.094 -28.082  1.00 25.00           C
ATOM      2  CA  ILE     2      32.272  61.007 -24.862  1.00 25.00           C
ATOM      3  CA  PRO     3      35.772  61.872 -25.920  1.00 25.00           C
ATOM      4  CA  PHE     4      37.696  63.349 -23.039  1.00 25.00           C
ATOM      5  CA  LYS     5      41.233  64.092 -24.232  1.00 25.00           C
ATOM      6  CA  ASP     6      43.140  66.104 -21.624  1.00 25.00           C
ATOM      7  CA  ILE     7      45.169  64.357 -18.992  1.00 25.00           C
ATOM      8  CA  THR     8      48.422  63.771 -17.025  1.00 25.00           C
ATOM      9  CA  LEU     9      46.703  60.969 -15.061  1.00 25.00           C
ATOM     10  CA  ALA    10      49.252  58.538 -13.515  1.00 25.00           C
ATOM     11  CA  ASP    11      47.430  56.005 -11.386  1.00 25.00           C
ATOM     12  CA  ARG    12      50.803  55.692  -9.600  1.00 25.00           C
ATOM     13  CA  ASP    13      50.607  59.366  -8.535  1.00 25.00           C
ATOM     14  CA  THR    14      47.059  58.818  -7.203  1.00 25.00           C
ATOM     15  CA  ILE    15      48.243  55.749  -5.242  1.00 25.00           C
ATOM     16  CA  THR    16      51.137  57.777  -3.767  1.00 25.00           C
ATOM     17  CA  ALA    17      48.704  60.555  -2.752  1.00 25.00           C
ATOM     18  CA  PHE    18      46.412  57.975  -1.092  1.00 25.00           C
ATOM     19  CA  THR    19      49.398  56.507   0.805  1.00 25.00           C
ATOM     20  CA  MET    20      50.410  60.011   1.974  1.00 25.00           C
ATOM     21  CA  LYS    21      52.749  63.070   2.237  1.00 25.00           C
ATOM     22  CA  SER    22      52.761  65.786   4.946  1.00 25.00           C
ATOM     23  CA  ASP    23      51.787  64.822   8.434  1.00 25.00           C
ATOM     24  CA  ARG    24      48.019  64.041   8.473  1.00 25.00           C
ATOM     25  CA  ARG    25      46.249  61.012   9.939  1.00 25.00           C
ATOM     26  CA  ASN    26      45.199  57.387   9.461  1.00 25.00           C
ATOM     27  CA  CYS    27      41.553  57.066  10.260  1.00 25.00           C
ATOM     28  CA  ASP    28      40.826  55.690  13.711  1.00 25.00           C
ATOM     29  CA  LEU    29      40.077  52.626  11.538  1.00 25.00           C
ATOM     30  CA  SER    30      37.890  50.393  13.737  1.00 25.00           C
ATOM     31  CA  PHE    31      34.372  49.775  12.273  1.00 25.00           C
ATOM     32  CA  SER    32      35.643  51.919   9.365  1.00 25.00           C
ATOM     33  CA  ASN    33      32.124  52.004   7.857  1.00 25.00           C
ATOM     34  CA  LEU    34      30.672  53.060  11.240  1.00 25.00           C
ATOM     35  CA  CYS    35      33.294  55.837  11.524  1.00 25.00           C
ATOM     36  CA  SER    36      32.433  57.046   7.994  1.00 25.00           C
ATOM     37  CA  TRP    37      28.709  57.078   8.886  1.00 25.00           C
ATOM     38  CA  ARG    38      29.461  59.088  12.059  1.00 25.00           C
ATOM     39  CA  PHE    39      27.877  56.404  14.254  1.00 25.00           C
ATOM     40  CA  LEU    40      25.208  54.233  15.880  1.00 25.00           C
ATOM     41  CA  TYR    41      23.671  56.599  18.399  1.00 25.00           C
ATOM     42  CA  ASP    42      26.705  56.888  20.700  1.00 25.00           C
ATOM     43  CA  THR    43      30.484  56.670  20.853  1.00 25.00           C
ATOM     44  CA  GLN    44      32.705  53.605  21.373  1.00 25.00           C
ATOM     45  CA  PHE    45      32.057  50.377  19.374  1.00 25.00           C
ATOM     46  CA  ALA    46      32.094  47.054  17.453  1.00 25.00           C
ATOM     47  CA  VAL    47      35.812  46.805  18.273  1.00 25.00           C
ATOM     48  CA  ILE    48      36.311  45.662  14.638  1.00 25.00           C
ATOM     49  CA  ASP    49      37.470  42.894  12.300  1.00 25.00           C
ATOM     50  CA  ASP    50      41.213  43.105  11.619  1.00 25.00           C
ATOM     51  CA  PHE    51      40.368  46.759  11.190  1.00 25.00           C
ATOM     52  CA  LEU    52      38.935  48.735   8.327  1.00 25.00           C
ATOM     53  CA  VAL    53      39.478  50.162   4.858  1.00 25.00           C
ATOM     54  CA  PHE    54      42.459  49.074   2.821  1.00 25.00           C
ATOM     55  CA  LYS    55      46.095  48.663   1.643  1.00 25.00           C
ATOM     56  CA  PHE    56      47.403  48.530  -1.963  1.00 25.00           C
ATOM     57  CA  TRP    57      48.788  48.683  -5.502  1.00 25.00           C
ATOM     58  CA  ALA    58      49.597  44.964  -5.944  1.00 25.00           C
ATOM     59  CA  GLY    59      49.409  43.098  -9.261  1.00 25.00           C
ATOM     60  CA  GLU    60      46.164  44.925  -9.883  1.00 25.00           C
ATOM     61  CA  GLN    61      42.724  46.133  -8.633  1.00 25.00           C
ATOM     62  CA  LEU    62      40.292  46.278  -5.721  1.00 25.00           C
ATOM     63  CA  ALA    63      39.136  48.087  -2.576  1.00 25.00           C
ATOM     64  CA  TYR    64      37.732  50.731  -0.148  1.00 25.00           C
ATOM     65  CA  MET    65      34.366  52.505   0.057  1.00 25.00           C
ATOM     66  CA  MET    66      35.038  52.977   3.752  1.00 25.00           C
ATOM     67  CA  PRO    67      35.231  56.758   3.573  1.00 25.00           C
ATOM     68  CA  VAL    68      31.850  56.551   1.869  1.00 25.00           C
ATOM     69  CA  GLY    69      30.009  59.633   0.680  1.00 25.00           C
ATOM     70  CA  ASN    70      29.116  63.267   1.411  1.00 25.00           C
ATOM     71  CA  GLY    71      29.395  67.021   1.709  1.00 25.00           C
ATOM     72  CA  ASP    72      32.323  66.685  -0.772  1.00 25.00           C
ATOM     73  CA  LEU    73      34.268  63.460  -1.205  1.00 25.00           C
ATOM     74  CA  LYS    74      31.829  62.913  -4.105  1.00 25.00           C
ATOM     75  CA  ALA    75      34.734  63.009  -6.598  1.00 25.00           C
ATOM     76  CA  VAL    76      36.660  60.457  -4.489  1.00 25.00           C
ATOM     77  CA  LEU    77      33.581  58.181  -4.388  1.00 25.00           C
ATOM     78  CA  ARG    78      33.221  58.457  -8.191  1.00 25.00           C
ATOM     79  CA  LYS    79      36.920  57.572  -8.631  1.00 25.00           C
ATOM     80  CA  LEU    80      36.493  54.537  -6.333  1.00 25.00           C
ATOM     81  CA  ILE    81      33.437  53.411  -8.349  1.00 25.00           C
ATOM     82  CA  GLU    82      35.422  53.770 -11.604  1.00 25.00           C
ATOM     83  CA  ASP    83      38.284  51.706 -10.117  1.00 25.00           C
ATOM     84  CA  ALA    84      35.801  48.997  -9.037  1.00 25.00           C
ATOM     85  CA  ASP    85      34.297  48.937 -12.558  1.00 25.00           C
ATOM     86  CA  LYS    86      37.799  48.599 -14.073  1.00 25.00           C
ATOM     87  CA  GLU    87      36.629  44.969 -13.617  1.00 25.00           C
ATOM     88  CA  LYS    88      33.635  42.556 -13.669  1.00 25.00           C
ATOM     89  CA  HIS    89      33.002  43.756 -10.150  1.00 25.00           C
ATOM     90  CA  ASN    90      35.415  44.046  -7.187  1.00 25.00           C
ATOM     91  CA  PHE    91      35.112  45.053  -3.566  1.00 25.00           C
ATOM     92  CA  CYS    92      31.606  46.024  -4.620  1.00 25.00           C
ATOM     93  CA  MET    93      30.643  49.720  -4.676  1.00 25.00           C
ATOM     94  CA  LEU    94      29.157  52.980  -3.306  1.00 25.00           C
ATOM     95  CA  GLY    95      27.642  56.490  -3.087  1.00 25.00           C
ATOM     96  CA  VAL    96      26.327  57.332  -6.560  1.00 25.00           C
ATOM     97  CA  CYS    97      24.729  60.272  -8.401  1.00 25.00           C
ATOM     98  CA  SER    98      21.681  61.223 -10.571  1.00 25.00           C
ATOM     99  CA  ASN    99      21.282  58.043 -12.667  1.00 25.00           C
ATOM    100  CA  MET   100      22.622  55.932  -9.766  1.00 25.00           C
ATOM    101  CA  ARG   101      20.159  57.622  -7.368  1.00 25.00           C
ATOM    102  CA  ALA   102      17.279  56.922  -9.793  1.00 25.00           C
ATOM    103  CA  ASP   103      18.346  53.252 -10.039  1.00 25.00           C
ATOM    104  CA  LEU   104      18.460  53.004  -6.220  1.00 25.00           C
ATOM    105  CA  GLU   105      14.957  54.536  -5.990  1.00 25.00           C
ATOM    106  CA  ALA   106      13.664  52.029  -8.581  1.00 25.00           C
ATOM    107  CA  ILE   107      15.221  49.143  -6.600  1.00 25.00           C
ATOM    108  CA  LEU   108      18.324  48.297  -8.660  1.00 25.00           C
ATOM    109  CA  PRO   109      16.701  48.403 -12.119  1.00 25.00           C
ATOM    110  CA  GLU   110      19.537  47.269 -14.385  1.00 25.00           C
ATOM    111  CA  ARG   111      21.982  50.178 -14.561  1.00 25.00           C
ATOM    112  CA  PHE   112      24.594  50.977 -11.959  1.00 25.00           C
ATOM    113  CA  ILE   113      23.268  51.152  -8.445  1.00 25.00           C
ATOM    114  CA  PHE   114      23.952  53.031  -5.153  1.00 25.00           C
ATOM    115  CA  THR   115      22.508  55.682  -2.909  1.00 25.00           C
ATOM    116  CA  GLU   116      20.572  58.788  -1.889  1.00 25.00           C
ATOM    117  CA  ASP   117      17.350  59.834  -3.653  1.00 25.00           C
ATOM    290  CA  LYS   290      40.504  29.026  15.498  1.00 25.00           C
ATOM    291  CA  TYR   291      43.043  29.011  12.631  1.00 25.00           C
ATOM    292  CA  MET   292      43.681  25.275  13.183  1.00 25.00           C
ATOM    293  CA  ALA   293      39.911  24.599  13.133  1.00 25.00           C
ATOM    294  CA  CYS   294      39.574  26.580   9.874  1.00 25.00           C
ATOM    295  CA  LEU   295      42.451  24.579   8.330  1.00 25.00           C
ATOM    296  CA  LYS   296      39.896  23.272   5.816  1.00 25.00           C
ATOM    297  CA  ASP   297      42.949  21.104   5.016  1.00 25.00           C
ATOM    298  CA  HIS   298      46.368  22.707   4.305  1.00 25.00           C
TER
END
