
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS393_4-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS393_4-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        52 - 87          4.71    20.11
  LONGEST_CONTINUOUS_SEGMENT:    36        53 - 88          4.79    19.80
  LONGEST_CONTINUOUS_SEGMENT:    36        54 - 89          4.83    19.63
  LCS_AVERAGE:     21.91

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        90 - 108         1.95    21.36
  LCS_AVERAGE:      9.56

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        73 - 87          0.53    19.79
  LCS_AVERAGE:      5.63

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      4    6   24     4    4    4    5    8    8    9   13   16   19   22   22   24   26   27   28   28   29   33   34 
LCS_GDT     I       2     I       2      4    8   24     4    4    4    6    9   12   13   14   16   19   22   22   24   26   27   28   28   29   33   34 
LCS_GDT     P       3     P       3      4    8   24     4    4    4    6    8   12   13   14   16   19   22   22   24   26   27   28   28   29   33   34 
LCS_GDT     F       4     F       4      5    8   24     4    4    5    6    8   11   13   14   16   19   22   22   24   26   27   28   28   29   33   34 
LCS_GDT     K       5     K       5      5    8   24     3    4    5    6    9   12   13   14   17   20   22   22   24   26   27   28   28   29   33   34 
LCS_GDT     D       6     D       6      5    8   24     3    4    5    6    9   12   15   18   20   22   22   22   24   27   27   28   28   29   33   34 
LCS_GDT     I       7     I       7      5    8   24     3    4    5    6   10   12   15   18   20   22   22   23   24   27   27   28   28   29   33   34 
LCS_GDT     T       8     T       8      5    8   24     3    4    5    6   10   12   14   17   20   22   22   23   24   27   27   28   28   29   33   34 
LCS_GDT     L       9     L       9      3   12   24     3    3    5    7   10   12   15   18   20   22   22   23   24   27   27   27   28   31   34   37 
LCS_GDT     A      10     A      10     10   13   24     3    3    8   11   12   13   15   18   20   22   22   23   24   27   27   27   28   31   36   39 
LCS_GDT     D      11     D      11     10   13   24     4    9    9   11   12   13   15   17   20   22   22   23   24   27   27   28   31   32   40   43 
LCS_GDT     R      12     R      12     10   13   24     5    9    9   11   12   13   15   15   19   22   22   23   26   27   28   33   34   38   40   43 
LCS_GDT     D      13     D      13     10   13   24     5    9    9   11   12   13   15   18   20   22   22   23   26   28   31   36   37   38   48   52 
LCS_GDT     T      14     T      14     10   13   24     5    9    9   11   12   13   15   18   20   22   22   23   24   27   30   36   43   45   51   53 
LCS_GDT     I      15     I      15     10   13   24     5    9    9   11   12   13   16   18   20   22   24   28   33   35   39   42   47   49   52   56 
LCS_GDT     T      16     T      16     10   13   24     5    9    9   11   12   15   16   20   21   25   28   30   36   38   41   44   48   52   55   58 
LCS_GDT     A      17     A      17     10   13   24     5    9    9   11   12   14   16   18   26   28   31   34   38   40   45   49   52   55   59   64 
LCS_GDT     F      18     F      18     10   13   24     4    9    9   11   12   15   21   23   26   28   32   36   39   43   47   51   57   61   63   67 
LCS_GDT     T      19     T      19     10   13   24     5    9   16   17   17   18   18   18   20   26   30   36   39   42   47   51   57   61   63   67 
LCS_GDT     M      20     M      20     10   13   24     9   14   16   17   17   18   18   18   20   25   28   36   39   42   47   52   58   61   63   67 
LCS_GDT     K      21     K      21      4   13   24     3    4    5    9   10   18   18   18   20   23   27   31   36   42   47   52   58   61   63   67 
LCS_GDT     S      22     S      22      4   13   24     3    4    5    8    9   11   15   17   20   23   26   28   32   38   42   45   51   56   62   67 
LCS_GDT     D      23     D      23      4   13   24     3    4    5    9   12   17   19   19   21   25   29   32   36   41   49   52   53   57   60   64 
LCS_GDT     R      24     R      24      3    8   24     1    3    6   10   14   17   19   20   22   25   26   28   33   38   49   52   52   57   60   64 
LCS_GDT     R      25     R      25      3    8   21     1    3    5    8    9   12   15   15   17   24   25   28   31   33   43   52   52   57   60   64 
LCS_GDT     N      26     N      26      3    8   21     1    3    5    8    9   12   15   15   17   24   25   28   31   33   49   52   52   57   60   64 
LCS_GDT     C      27     C      27      3   13   21     1    4    5    6    9   12   12   16   20   24   25   27   31   41   49   52   52   57   60   64 
LCS_GDT     D      28     D      28      3   13   21     1    5    9   12   12   13   14   19   24   26   30   33   38   43   49   52   57   61   63   67 
LCS_GDT     L      29     L      29      4   13   21     2    4    8   12   13   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     S      30     S      30     10   13   21     7    9   10   12   12   13   20   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     F      31     F      31     10   13   21     7    9   10   12   12   13   13   16   22   25   34   38   41   44   48   52   58   60   63   67 
LCS_GDT     S      32     S      32     10   13   21     7    9   10   12   12   13   13   14   15   16   18   20   22   24   29   39   49   56   59   63 
LCS_GDT     N      33     N      33     10   13   21     7    9   10   12   12   13   13   14   15   20   21   22   27   34   49   52   57   61   63   67 
LCS_GDT     L      34     L      34     10   13   21     7    9   10   12   12   13   14   20   25   27   33   38   41   43   49   52   58   61   63   67 
LCS_GDT     C      35     C      35     10   13   21     7    9   10   12   12   13   13   14   15   20   21   22   27   41   49   52   54   59   63   67 
LCS_GDT     S      36     S      36     10   13   21     7    9   10   12   12   13   13   14   15   16   18   19   19   21   29   31   32   34   37   38 
LCS_GDT     W      37     W      37     10   13   21     4    9   10   12   12   13   13   14   15   16   18   20   24   25   29   31   43   48   53   60 
LCS_GDT     R      38     R      38     10   13   21     4    9   10   12   12   13   13   14   15   16   18   23   26   29   38   45   52   59   62   67 
LCS_GDT     F      39     F      39     10   13   21     3    4   10   12   12   13   13   14   15   16   18   20   22   24   29   31   35   42   52   57 
LCS_GDT     L      40     L      40      3   13   21     3    3    3    5   11   13   13   14   15   16   18   19   22   24   29   31   32   32   38   41 
LCS_GDT     Y      41     Y      41      3    4   21     3    3    3    3    4    4    6   11   15   16   18   19   19   21   22   23   26   28   38   41 
LCS_GDT     D      42     D      42      3    8   21     3    3    3    4    7    9   10   11   11   14   18   19   19   21   22   23   26   32   38   41 
LCS_GDT     T      43     T      43      5    8   21     2    4    5    6    7    8    9   10   11   12   16   16   18   19   22   23   26   26   38   41 
LCS_GDT     Q      44     Q      44      5    8   21     3    4    5    6    7    8    9   10   13   15   18   19   19   21   28   31   35   48   52   57 
LCS_GDT     F      45     F      45      5    8   21     3    3    5    6    7    8    9   10   11   25   25   28   30   37   42   49   57   61   63   67 
LCS_GDT     A      46     A      46      6    8   22     3    5    6    6    7    8    9   10   26   31   33   37   41   44   48   52   58   61   63   67 
LCS_GDT     V      47     V      47      6    8   22     3    5    6    6    7   12   15   16   21   27   30   36   40   43   45   46   52   56   57   62 
LCS_GDT     I      48     I      48      6    8   22     4    5    6    6    8   11   12   13   14   17   21   24   25   28   29   32   42   45   51   53 
LCS_GDT     D      49     D      49      6    8   22     4    5    6    6    8   11   12   13   13   15   19   21   23   24   26   28   29   31   35   36 
LCS_GDT     D      50     D      50      6    8   22     4    5    6    6    7   11   13   13   16   18   21   24   26   28   28   31   33   36   42   44 
LCS_GDT     F      51     F      51      6    8   22     4    5    6    6    9   13   15   16   17   21   22   25   27   29   31   32   39   46   49   53 
LCS_GDT     L      52     L      52      4    7   36     3    3    5    6    8   13   15   18   18   21   23   26   31   38   40   44   47   51   54   58 
LCS_GDT     V      53     V      53      4    7   36     1    3    4    6    9   13   15   18   19   21   24   26   31   38   41   45   47   51   56   59 
LCS_GDT     F      54     F      54      4   11   36     4    5    6    7   10   14   15   20   28   30   34   38   41   44   49   52   58   60   63   67 
LCS_GDT     K      55     K      55      4   13   36     4    5    6    8   12   15   18   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     F      56     F      56      4   13   36     4    4    6    9   12   15   16   24   29   31   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     W      57     W      57      4   13   36     4    5    6    8   12   15   16   23   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     A      58     A      58      4   13   36     3    4    6    9   12   15   16   25   29   32   34   38   41   44   48   52   58   61   63   67 
LCS_GDT     G      59     G      59      5   13   36     4    5    6    9   12   17   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     E      60     E      60      5   13   36     4    5    7   11   14   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     Q      61     Q      61      5   13   36     3    5    7   11   14   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     L      62     L      62      5   13   36     4    5    6    9   12   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     A      63     A      63      5   13   36     4    5    6    9   12   15   19   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     Y      64     Y      64      4   13   36     3    5    6    9   12   15   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     M      65     M      65      4   13   36     4    4    6    8   13   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     M      66     M      66      4   13   36     4    5    6    8   13   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     P      67     P      67      4   13   36     4    5    6    8   13   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     V      68     V      68      4    9   36     3    4    4    8    9   10   13   18   20   26   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     G      69     G      69      4    9   36     3    4    4    8    9   10   13   18   20   21   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     N      70     N      70      4    9   36     3    4    4    8    9   11   15   18   24   32   34   38   41   44   48   52   58   61   63   67 
LCS_GDT     G      71     G      71      4    9   36     3    4    4    8   10   12   15   18   24   32   34   37   41   44   48   52   58   61   63   67 
LCS_GDT     D      72     D      72      3   16   36     3    3    7   11   14   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     L      73     L      73     15   16   36    14   14   16   17   17   18   19   23   26   31   33   38   41   44   49   52   58   61   63   67 
LCS_GDT     K      74     K      74     15   16   36    14   14   16   17   17   18   19   22   26   31   33   38   41   44   49   52   58   61   63   67 
LCS_GDT     A      75     A      75     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     V      76     V      76     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     L      77     L      77     15   16   36    14   14   16   17   17   18   20   24   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     R      78     R      78     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     K      79     K      79     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     L      80     L      80     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     I      81     I      81     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     E      82     E      82     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     D      83     D      83     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     A      84     A      84     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     D      85     D      85     15   16   36    14   14   16   17   17   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     K      86     K      86     15   16   36    14   14   16   17   17   19   22   24   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     E      87     E      87     15   16   36     4   11   15   17   17   18   21   24   27   31   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     K      88     K      88      4   16   36     2    4    5    7    8   11   16   21   22   25   26   31   36   39   45   49   52   55   59   65 
LCS_GDT     H      89     H      89      4    8   36     4    4    5    7    8   11   16   21   22   25   26   31   34   38   43   48   51   57   60   65 
LCS_GDT     N      90     N      90      4   19   35     4    4    5    7    8   16   18   21   22   25   26   28   34   37   42   45   52   57   60   64 
LCS_GDT     F      91     F      91      6   19   33     4    7   14   16   16   17   18   21   22   25   26   28   34   35   42   45   52   57   60   64 
LCS_GDT     C      92     C      92      6   19   33     4    7   12   16   16   17   19   21   22   25   29   32   36   42   49   52   52   57   60   66 
LCS_GDT     M      93     M      93      6   19   33     3    9   14   16   16   17   18   22   25   30   33   37   40   44   49   52   58   61   63   67 
LCS_GDT     L      94     L      94      6   19   33     3    8   14   16   16   17   18   22   23   29   33   36   39   43   49   52   58   61   63   67 
LCS_GDT     G      95     G      95      6   19   33     3    9   14   16   16   17   18   20   25   28   33   36   39   44   48   52   58   61   63   67 
LCS_GDT     V      96     V      96      6   19   33     3   10   14   16   16   17   21   23   26   32   34   37   39   44   48   52   58   61   63   67 
LCS_GDT     C      97     C      97     11   19   33     3    4    6   12   14   17   21   23   26   28   32   36   39   44   48   52   58   61   63   67 
LCS_GDT     S      98     S      98     11   19   33    10   10   14   16   16   17   21   23   26   28   32   36   39   44   48   52   58   61   63   67 
LCS_GDT     N      99     N      99     11   19   33    10   10   14   16   16   17   21   23   26   28   31   36   39   42   47   52   58   61   63   67 
LCS_GDT     M     100     M     100     11   19   33    10   10   14   16   16   17   21   23   26   28   32   36   39   43   48   52   58   61   63   67 
LCS_GDT     R     101     R     101     11   19   33    10   10   14   16   16   17   21   23   26   28   32   36   39   44   48   52   58   61   63   67 
LCS_GDT     A     102     A     102     11   19   33    10   10   14   16   16   17   21   23   26   28   31   36   39   42   47   52   58   61   63   67 
LCS_GDT     D     103     D     103     11   19   33    10   10   14   16   16   17   21   23   26   28   31   36   39   42   47   52   58   61   63   67 
LCS_GDT     L     104     L     104     11   19   33    10   10   14   16   16   17   21   23   26   28   32   36   39   44   48   52   58   61   63   67 
LCS_GDT     E     105     E     105     11   19   33    10   10   14   16   16   17   21   23   26   28   32   36   39   43   48   52   58   61   63   67 
LCS_GDT     A     106     A     106     11   19   33    10   10   14   16   16   17   21   23   26   28   31   36   39   42   46   52   58   61   63   67 
LCS_GDT     I     107     I     107     11   19   33    10   10   14   16   16   17   21   23   26   28   31   36   39   42   48   52   58   61   63   67 
LCS_GDT     L     108     L     108      5   19   33     4    5    7    9   15   17   18   20   25   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     P     109     P     109      5    7   28     4    5    8   11   15   19   22   25   29   32   34   38   41   44   49   52   58   61   63   67 
LCS_GDT     E     110     E     110      5    7   28     4    4    5    8   13   17   18   21   24   29   33   36   40   43   49   52   53   57   60   64 
LCS_GDT     R     111     R     111      5    7   28     4    4    5    6   10   12   15   18   21   24   31   36   40   43   49   52   53   57   60   66 
LCS_GDT     F     112     F     112      4    7   28     3    4    5    6    9   12   16   16   21   24   27   35   40   43   49   52   53   57   60   66 
LCS_GDT     I     113     I     113      4    7   28     3    4    5    6   10   12   15   16   18   21   27   34   39   43   45   48   53   57   60   66 
LCS_GDT     F     114     F     114      4    7   28     4    4    5    8   10   12   15   16   18   21   23   34   38   42   45   48   53   57   63   67 
LCS_GDT     T     115     T     115      4    7   28     4    4    5    8    9   11   14   16   18   21   23   24   25   29   42   48   53   57   63   67 
LCS_GDT     E     116     E     116      4    7   28     4    4    5    5    7    8   10   12   17   19   19   22   24   25   29   33   39   45   54   58 
LCS_GDT     D     117     D     117      4    7   28     4    4    5    5    6    8    9   12   13   16   18   21   23   24   29   31   36   40   49   50 
LCS_GDT     K     290     K     290      3    3    9     0    3    3    3    3    3    4    5    7    8    8    8    9    9    9    9   15   17   20   21 
LCS_GDT     Y     291     Y     291      3    3    9     3    3    3    3    3    3    4    6    7    8   11   12   12   12   15   15   16   17   20   21 
LCS_GDT     M     292     M     292      3    3    9     3    3    3    3    3    4    7    7    7    8   11   12   12   12   15   15   23   25   26   27 
LCS_GDT     A     293     A     293      3    5    9     3    3    3    4    4    5    7    7    7    8   11   12   12   12   15   15   17   18   20   25 
LCS_GDT     C     294     C     294      3    5    9     3    3    4    4    4    5    7    7    7    8   11   12   12   18   19   21   24   25   26   27 
LCS_GDT     L     295     L     295      3    5    9     3    3    4    4    4    5    7    8   10   12   14   17   19   21   21   22   24   25   26   28 
LCS_GDT     K     296     K     296      3    5    9     3    3    4    4    4    5    7    7    7   12   14   17   19   21   21   22   24   25   26   28 
LCS_GDT     D     297     D     297      3    5    9     3    3    4    4    4    5    7    7   11   12   15   17   19   21   21   22   24   25   26   27 
LCS_GDT     H     298     H     298      3    4    9     3    3    3    4    4    5    7    8   11   12   16   17   19   21   21   22   24   25   26   27 
LCS_AVERAGE  LCS_A:  12.37  (   5.63    9.56   21.91 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     14     16     17     17     19     22     25     29     32     34     38     41     44     49     52     58     61     63     67 
GDT PERCENT_CA  11.11  11.11  12.70  13.49  13.49  15.08  17.46  19.84  23.02  25.40  26.98  30.16  32.54  34.92  38.89  41.27  46.03  48.41  50.00  53.17
GDT RMS_LOCAL    0.25   0.25   0.64   0.81   0.81   2.26   2.48   2.88   3.12   3.76   3.84   4.06   4.34   4.77   5.26   5.54   5.98   6.29   6.36   6.84
GDT RMS_ALL_CA  19.96  19.96  20.52  20.33  20.33  19.56  19.69  19.85  19.87  19.37  19.39  19.73  19.62  19.31  20.00  19.18  18.86  18.60  18.73  18.67

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         43.176
LGA    I       2      I       2         40.114
LGA    P       3      P       3         46.442
LGA    F       4      F       4         44.331
LGA    K       5      K       5         46.378
LGA    D       6      D       6         45.483
LGA    I       7      I       7         41.379
LGA    T       8      T       8         45.308
LGA    L       9      L       9         44.157
LGA    A      10      A      10         42.498
LGA    D      11      D      11         35.634
LGA    R      12      R      12         35.282
LGA    D      13      D      13         34.378
LGA    T      14      T      14         29.909
LGA    I      15      I      15         25.858
LGA    T      16      T      16         26.180
LGA    A      17      A      17         23.642
LGA    F      18      F      18         17.652
LGA    T      19      T      19         17.471
LGA    M      20      M      20         17.840
LGA    K      21      K      21         17.198
LGA    S      22      S      22         13.869
LGA    D      23      D      23         10.634
LGA    R      24      R      24         12.576
LGA    R      25      R      25         14.535
LGA    N      26      N      26         13.717
LGA    C      27      C      27         12.867
LGA    D      28      D      28          9.413
LGA    L      29      L      29          3.011
LGA    S      30      S      30          3.835
LGA    F      31      F      31          5.762
LGA    S      32      S      32         11.404
LGA    N      33      N      33         10.885
LGA    L      34      L      34          7.296
LGA    C      35      C      35          9.989
LGA    S      36      S      36         16.586
LGA    W      37      W      37         17.007
LGA    R      38      R      38         14.049
LGA    F      39      F      39         20.933
LGA    L      40      L      40         25.394
LGA    Y      41      Y      41         26.276
LGA    D      42      D      42         26.600
LGA    T      43      T      43         24.654
LGA    Q      44      Q      44         18.356
LGA    F      45      F      45         11.476
LGA    A      46      A      46          6.714
LGA    V      47      V      47          7.963
LGA    I      48      I      48         15.215
LGA    D      49      D      49         20.519
LGA    D      50      D      50         17.779
LGA    F      51      F      51         13.750
LGA    L      52      L      52          9.957
LGA    V      53      V      53          9.432
LGA    F      54      F      54          5.295
LGA    K      55      K      55          3.783
LGA    F      56      F      56          4.081
LGA    W      57      W      57          4.060
LGA    A      58      A      58          3.987
LGA    G      59      G      59          2.306
LGA    E      60      E      60          0.625
LGA    Q      61      Q      61          0.645
LGA    L      62      L      62          2.749
LGA    A      63      A      63          3.827
LGA    Y      64      Y      64          2.784
LGA    M      65      M      65          1.621
LGA    M      66      M      66          1.494
LGA    P      67      P      67          1.388
LGA    V      68      V      68          6.439
LGA    G      69      G      69          7.437
LGA    N      70      N      70          7.219
LGA    G      71      G      71          8.376
LGA    D      72      D      72          3.207
LGA    L      73      L      73          5.993
LGA    K      74      K      74          5.639
LGA    A      75      A      75          3.500
LGA    V      76      V      76          3.684
LGA    L      77      L      77          4.778
LGA    R      78      R      78          3.371
LGA    K      79      K      79          2.752
LGA    L      80      L      80          3.965
LGA    I      81      I      81          3.347
LGA    E      82      E      82          2.777
LGA    D      83      D      83          3.728
LGA    A      84      A      84          3.707
LGA    D      85      D      85          2.727
LGA    K      86      K      86          4.099
LGA    E      87      E      87          5.515
LGA    K      88      K      88         11.406
LGA    H      89      H      89         11.242
LGA    N      90      N      90         11.058
LGA    F      91      F      91         10.904
LGA    C      92      C      92          8.667
LGA    M      93      M      93          6.502
LGA    L      94      L      94          7.632
LGA    G      95      G      95         10.043
LGA    V      96      V      96          8.955
LGA    C      97      C      97         13.456
LGA    S      98      S      98         14.806
LGA    N      99      N      99         17.763
LGA    M     100      M     100         14.205
LGA    R     101      R     101         12.227
LGA    A     102      A     102         16.873
LGA    D     103      D     103         16.528
LGA    L     104      L     104         11.738
LGA    E     105      E     105         13.870
LGA    A     106      A     106         17.165
LGA    I     107      I     107         13.996
LGA    L     108      L     108          7.223
LGA    P     109      P     109          3.072
LGA    E     110      E     110          7.682
LGA    R     111      R     111          8.334
LGA    F     112      F     112          9.482
LGA    I     113      I     113         10.498
LGA    F     114      F     114         10.711
LGA    T     115      T     115         12.544
LGA    E     116      E     116         18.242
LGA    D     117      D     117         20.528
LGA    K     290      K     290         26.099
LGA    Y     291      Y     291         27.519
LGA    M     292      M     292         25.452
LGA    A     293      A     293         30.657
LGA    C     294      C     294         34.944
LGA    L     295      L     295         35.515
LGA    K     296      K     296         37.422
LGA    D     297      D     297         43.154
LGA    H     298      H     298         46.624

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     25    2.88    21.429    18.107     0.838

LGA_LOCAL      RMSD =  2.885  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.059  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 17.890  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.036298 * X  +  -0.656771 * Y  +   0.753216 * Z  +  37.327789
  Y_new =   0.741741 * X  +  -0.522803 * Y  +  -0.420116 * Z  +  50.750080
  Z_new =   0.669704 * X  +   0.543442 * Y  +   0.506130 * Z  +   8.272608 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.820933   -2.320660  [ DEG:    47.0360   -132.9640 ]
  Theta =  -0.733810   -2.407783  [ DEG:   -42.0442   -137.9558 ]
  Phi   =   1.619693   -1.521900  [ DEG:    92.8016    -87.1984 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS393_4-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS393_4-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   25   2.88  18.107    17.89
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS393_4-D1
PFRMAT TS
TARGET T0372
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1       3.211  63.643  -7.396  1.00 25.00           C
ATOM      2  CA  ILE     2       4.665  60.131  -7.016  1.00 25.00           C
ATOM      3  CA  PRO     3       1.583  57.855  -6.980  1.00 25.00           C
ATOM      4  CA  PHE     4       2.509  56.191  -3.702  1.00 25.00           C
ATOM      5  CA  LYS     5       2.921  55.185  -0.066  1.00 25.00           C
ATOM      6  CA  ASP     6       4.628  57.390   2.470  1.00 25.00           C
ATOM      7  CA  ILE     7       7.153  56.014   4.943  1.00 25.00           C
ATOM      8  CA  THR     8       5.592  53.022   6.807  1.00 25.00           C
ATOM      9  CA  LEU     9       7.336  54.447   9.909  1.00 25.00           C
ATOM     10  CA  ALA    10      10.477  53.319   8.159  1.00 25.00           C
ATOM     11  CA  ASP    11      14.101  53.052   6.999  1.00 25.00           C
ATOM     12  CA  ARG    12      13.148  56.695   6.299  1.00 25.00           C
ATOM     13  CA  ASP    13      13.487  57.525  10.023  1.00 25.00           C
ATOM     14  CA  THR    14      16.933  55.858  10.107  1.00 25.00           C
ATOM     15  CA  ILE    15      18.009  57.869   7.030  1.00 25.00           C
ATOM     16  CA  THR    16      16.800  61.102   8.690  1.00 25.00           C
ATOM     17  CA  ALA    17      18.756  60.231  11.866  1.00 25.00           C
ATOM     18  CA  PHE    18      21.897  59.564   9.778  1.00 25.00           C
ATOM     19  CA  THR    19      21.461  62.930   8.004  1.00 25.00           C
ATOM     20  CA  MET    20      21.083  64.691  11.384  1.00 25.00           C
ATOM     21  CA  LYS    21      19.547  68.102  12.030  1.00 25.00           C
ATOM     22  CA  SER    22      22.823  69.632  13.279  1.00 25.00           C
ATOM     23  CA  ASP    23      26.553  69.345  13.354  1.00 25.00           C
ATOM     24  CA  ARG    24      29.968  68.350  12.156  1.00 25.00           C
ATOM     25  CA  ARG    25      32.535  66.720   9.899  1.00 25.00           C
ATOM     26  CA  ASN    26      33.737  63.122   9.646  1.00 25.00           C
ATOM     27  CA  CYS    27      35.808  60.131  10.794  1.00 25.00           C
ATOM     28  CA  ASP    28      35.345  56.776   9.102  1.00 25.00           C
ATOM     29  CA  LEU    29      35.917  53.872  11.492  1.00 25.00           C
ATOM     30  CA  SER    30      37.876  50.752  10.702  1.00 25.00           C
ATOM     31  CA  PHE    31      40.565  49.344   8.439  1.00 25.00           C
ATOM     32  CA  SER    32      38.391  49.745   5.311  1.00 25.00           C
ATOM     33  CA  ASN    33      37.821  53.438   6.153  1.00 25.00           C
ATOM     34  CA  LEU    34      41.590  53.941   6.607  1.00 25.00           C
ATOM     35  CA  CYS    35      42.247  52.262   3.229  1.00 25.00           C
ATOM     36  CA  SER    36      39.646  54.529   1.567  1.00 25.00           C
ATOM     37  CA  TRP    37      41.288  57.610   3.143  1.00 25.00           C
ATOM     38  CA  ARG    38      44.715  56.459   1.878  1.00 25.00           C
ATOM     39  CA  PHE    39      45.851  59.951   1.003  1.00 25.00           C
ATOM     40  CA  LEU    40      47.866  63.207   0.720  1.00 25.00           C
ATOM     41  CA  TYR    41      48.214  66.959  -0.115  1.00 25.00           C
ATOM     42  CA  ASP    42      45.788  69.625   1.217  1.00 25.00           C
ATOM     43  CA  THR    43      45.346  70.772   4.848  1.00 25.00           C
ATOM     44  CA  GLN    44      45.621  67.282   6.279  1.00 25.00           C
ATOM     45  CA  PHE    45      45.838  63.504   6.724  1.00 25.00           C
ATOM     46  CA  ALA    46      45.860  59.708   6.230  1.00 25.00           C
ATOM     47  CA  VAL    47      49.190  57.885   6.087  1.00 25.00           C
ATOM     48  CA  ILE    48      50.843  55.436   8.541  1.00 25.00           C
ATOM     49  CA  ASP    49      52.679  52.279   7.429  1.00 25.00           C
ATOM     50  CA  ASP    50      53.222  54.219   4.206  1.00 25.00           C
ATOM     51  CA  PHE    51      49.823  54.473   2.625  1.00 25.00           C
ATOM     52  CA  LEU    52      47.069  52.034   1.821  1.00 25.00           C
ATOM     53  CA  VAL    53      45.562  48.594   2.442  1.00 25.00           C
ATOM     54  CA  PHE    54      43.649  48.941  -0.830  1.00 25.00           C
ATOM     55  CA  LYS    55      41.998  45.618  -1.408  1.00 25.00           C
ATOM     56  CA  PHE    56      42.964  42.134  -0.095  1.00 25.00           C
ATOM     57  CA  TRP    57      41.210  38.831   0.730  1.00 25.00           C
ATOM     58  CA  ALA    58      38.913  35.746   0.736  1.00 25.00           C
ATOM     59  CA  GLY    59      38.144  34.783  -2.832  1.00 25.00           C
ATOM     60  CA  GLU    60      37.626  37.363  -5.657  1.00 25.00           C
ATOM     61  CA  GLN    61      35.734  40.599  -4.841  1.00 25.00           C
ATOM     62  CA  LEU    62      37.679  42.564  -2.312  1.00 25.00           C
ATOM     63  CA  ALA    63      36.898  44.410   0.971  1.00 25.00           C
ATOM     64  CA  TYR    64      37.688  48.121   0.717  1.00 25.00           C
ATOM     65  CA  MET    65      36.063  51.497   1.378  1.00 25.00           C
ATOM     66  CA  MET    66      33.425  53.481   3.149  1.00 25.00           C
ATOM     67  CA  PRO    67      35.350  56.737   3.281  1.00 25.00           C
ATOM     68  CA  VAL    68      35.809  56.630  -0.520  1.00 25.00           C
ATOM     69  CA  GLY    69      33.645  59.728  -1.096  1.00 25.00           C
ATOM     70  CA  ASN    70      30.016  60.768  -0.290  1.00 25.00           C
ATOM     71  CA  GLY    71      28.069  61.689  -3.435  1.00 25.00           C
ATOM     72  CA  ASP    72      28.957  65.180  -2.208  1.00 25.00           C
ATOM     73  CA  LEU    73      29.704  67.298  -5.253  1.00 25.00           C
ATOM     74  CA  LYS    74      30.544  66.685  -8.938  1.00 25.00           C
ATOM     75  CA  ALA    75      34.259  66.364  -8.063  1.00 25.00           C
ATOM     76  CA  VAL    76      33.413  63.866  -5.285  1.00 25.00           C
ATOM     77  CA  LEU    77      31.277  61.834  -7.730  1.00 25.00           C
ATOM     78  CA  ARG    78      34.150  61.816 -10.263  1.00 25.00           C
ATOM     79  CA  LYS    79      36.573  60.633  -7.543  1.00 25.00           C
ATOM     80  CA  LEU    80      34.144  57.839  -6.559  1.00 25.00           C
ATOM     81  CA  ILE    81      33.850  56.771 -10.225  1.00 25.00           C
ATOM     82  CA  GLU    82      37.667  56.714 -10.540  1.00 25.00           C
ATOM     83  CA  ASP    83      37.921  54.581  -7.370  1.00 25.00           C
ATOM     84  CA  ALA    84      35.302  52.157  -8.760  1.00 25.00           C
ATOM     85  CA  ASP    85      37.242  51.910 -12.053  1.00 25.00           C
ATOM     86  CA  LYS    86      40.473  51.198 -10.124  1.00 25.00           C
ATOM     87  CA  GLU    87      39.477  49.079  -7.106  1.00 25.00           C
ATOM     88  CA  LYS    88      37.588  50.027  -3.961  1.00 25.00           C
ATOM     89  CA  HIS    89      34.910  52.749  -3.835  1.00 25.00           C
ATOM     90  CA  ASN    90      31.373  54.252  -3.574  1.00 25.00           C
ATOM     91  CA  PHE    91      30.776  55.951  -0.184  1.00 25.00           C
ATOM     92  CA  CYS    92      28.271  53.273   0.862  1.00 25.00           C
ATOM     93  CA  MET    93      25.360  50.854   0.202  1.00 25.00           C
ATOM     94  CA  LEU    94      23.789  48.773   2.972  1.00 25.00           C
ATOM     95  CA  GLY    95      20.906  46.284   2.819  1.00 25.00           C
ATOM     96  CA  VAL    96      21.726  46.322  -0.867  1.00 25.00           C
ATOM     97  CA  CYS    97      22.250  43.101  -2.741  1.00 25.00           C
ATOM     98  CA  SER    98      18.640  42.710  -3.825  1.00 25.00           C
ATOM     99  CA  ASN    99      15.784  44.994  -4.961  1.00 25.00           C
ATOM    100  CA  MET   100      18.090  48.041  -4.717  1.00 25.00           C
ATOM    101  CA  ARG   101      20.753  46.222  -6.781  1.00 25.00           C
ATOM    102  CA  ALA   102      18.130  45.329  -9.425  1.00 25.00           C
ATOM    103  CA  ASP   103      16.986  48.982  -9.557  1.00 25.00           C
ATOM    104  CA  LEU   104      20.615  50.129  -9.983  1.00 25.00           C
ATOM    105  CA  GLU   105      21.107  47.602 -12.818  1.00 25.00           C
ATOM    106  CA  ALA   106      17.915  48.856 -14.523  1.00 25.00           C
ATOM    107  CA  ILE   107      19.140  52.470 -14.212  1.00 25.00           C
ATOM    108  CA  LEU   108      18.930  55.234 -11.655  1.00 25.00           C
ATOM    109  CA  PRO   109      17.167  57.348  -8.972  1.00 25.00           C
ATOM    110  CA  GLU   110      17.183  61.182  -8.777  1.00 25.00           C
ATOM    111  CA  ARG   111      19.665  60.756 -11.629  1.00 25.00           C
ATOM    112  CA  PHE   112      22.747  59.688  -9.617  1.00 25.00           C
ATOM    113  CA  ILE   113      24.850  56.516  -9.788  1.00 25.00           C
ATOM    114  CA  PHE   114      27.114  54.389  -7.642  1.00 25.00           C
ATOM    115  CA  THR   115      28.105  50.806  -8.658  1.00 25.00           C
ATOM    116  CA  GLU   116      29.482  49.570 -11.974  1.00 25.00           C
ATOM    117  CA  ASP   117      30.019  45.943 -13.003  1.00 25.00           C
ATOM    290  CA  LYS   290      41.084  35.302  25.359  1.00 25.00           C
ATOM    291  CA  TYR   291      39.175  38.597  25.769  1.00 25.00           C
ATOM    292  CA  MET   292      37.708  38.213  22.252  1.00 25.00           C
ATOM    293  CA  ALA   293      36.630  34.630  23.067  1.00 25.00           C
ATOM    294  CA  CYS   294      34.977  35.836  26.303  1.00 25.00           C
ATOM    295  CA  LEU   295      33.132  38.578  24.368  1.00 25.00           C
ATOM    296  CA  LYS   296      29.490  39.698  24.884  1.00 25.00           C
ATOM    297  CA  ASP   297      28.271  37.112  27.393  1.00 25.00           C
ATOM    298  CA  HIS   298      30.986  37.716  29.991  1.00 25.00           C
TER
END
