
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS393_5-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS393_5-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        63 - 106         4.91    23.02
  LONGEST_CONTINUOUS_SEGMENT:    44        64 - 107         4.93    22.95
  LCS_AVERAGE:     22.93

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        67 - 90          1.96    21.91
  LONGEST_CONTINUOUS_SEGMENT:    24        69 - 92          1.91    21.93
  LCS_AVERAGE:     10.28

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        70 - 87          0.97    22.32
  LCS_AVERAGE:      6.35

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      4    7   17     0    3    5    6    7   10   11   12   12   13   14   16   16   17   17   20   20   20   20   23 
LCS_GDT     I       2     I       2      4    7   17     0    3    5    6    8   10   11   12   12   13   14   16   16   19   19   20   20   20   20   25 
LCS_GDT     P       3     P       3      4    7   18     3    3    5    6    8   10   11   12   12   13   14   16   18   19   19   20   20   22   27   29 
LCS_GDT     F       4     F       4      4    7   18     3    3    5    6    8   10   11   12   12   13   14   17   18   19   19   20   23   25   27   29 
LCS_GDT     K       5     K       5      3    7   18     3    3    5    6    8   10   11   12   12   13   14   17   18   19   21   21   23   25   27   30 
LCS_GDT     D       6     D       6      4    7   18     3    4    4    6    8   10   11   12   12   13   15   17   18   19   21   22   23   25   28   30 
LCS_GDT     I       7     I       7      4    7   19     3    4    4    6    7    8   10   12   13   15   15   17   18   19   21   22   23   25   28   30 
LCS_GDT     T       8     T       8      4    7   19     3    4    4    5    8   10   11   12   14   16   16   17   18   19   21   22   23   25   28   30 
LCS_GDT     L       9     L       9      4    7   19     3    4    4    5    8   10   11   12   14   16   16   17   18   19   19   22   23   25   28   30 
LCS_GDT     A      10     A      10      6   12   19     3    3    7    9   12   12   13   13   14   16   16   17   18   19   21   22   24   26   28   30 
LCS_GDT     D      11     D      11     10   12   19     5    9    9   10   12   12   13   13   14   16   16   17   18   19   21   22   24   26   28   30 
LCS_GDT     R      12     R      12     10   12   19     5    9    9   10   12   12   13   13   14   16   16   17   18   19   21   22   24   27   28   30 
LCS_GDT     D      13     D      13     10   12   19     5    9    9   10   12   12   13   13   14   16   16   17   19   19   21   23   24   27   29   31 
LCS_GDT     T      14     T      14     10   12   19     5    9    9   10   12   12   13   13   14   16   16   18   20   20   21   24   25   28   33   36 
LCS_GDT     I      15     I      15     10   12   19     5    9    9   10   12   12   13   13   14   16   16   17   19   21   22   24   27   30   33   36 
LCS_GDT     T      16     T      16     10   12   19     5    9    9   10   12   12   13   13   14   16   16   17   19   21   22   24   25   27   33   36 
LCS_GDT     A      17     A      17     10   12   19     4    9    9   10   12   12   13   13   14   16   17   18   20   21   22   25   29   31   33   36 
LCS_GDT     F      18     F      18     10   12   19     4    9    9   10   12   12   13   13   14   16   17   18   20   21   22   26   29   31   33   36 
LCS_GDT     T      19     T      19     10   12   19     4    9    9   10   12   12   13   13   14   16   16   17   20   20   22   26   29   31   33   36 
LCS_GDT     M      20     M      20     10   12   19     3    7    9   10   12   12   13   13   14   16   17   18   20   20   22   26   29   31   33   36 
LCS_GDT     K      21     K      21      5   12   19     1    5    9    9   11   12   13   13   14   16   17   18   20   20   22   26   29   31   33   36 
LCS_GDT     S      22     S      22      5   12   19     1    5    5    7    8    9   12   13   14   15   17   18   20   20   22   26   29   31   32   35 
LCS_GDT     D      23     D      23      5    8   19     3    5    5    7    8   11   12   13   14   15   17   18   20   20   21   23   24   27   29   33 
LCS_GDT     R      24     R      24      5    8   19     3    5    5    7    8    9   10   12   13   15   17   18   20   20   21   23   24   27   29   33 
LCS_GDT     R      25     R      25      5    8   19     3    5    5    6    8    9   10   12   13   15   17   18   20   20   22   26   29   31   33   36 
LCS_GDT     N      26     N      26      3    8   19     1    3    4    7    8    9   10   12   13   15   17   18   20   20   21   26   29   31   33   36 
LCS_GDT     C      27     C      27      3    8   19     3    3    4    5    8    9   10   12   13   15   17   18   20   20   22   26   29   31   33   36 
LCS_GDT     D      28     D      28      3    6   19     3    3    3    5    7   10   11   11   13   15   17   18   20   20   21   26   29   31   33   36 
LCS_GDT     L      29     L      29      3   10   18     3    3    4    5    8   10   11   11   12   14   14   15   17   19   21   24   25   31   32   32 
LCS_GDT     S      30     S      30      3   10   18     3    3    3    5    7   10   11   11   12   14   14   15   17   19   21   24   25   31   32   36 
LCS_GDT     F      31     F      31      8   10   18     6    8    8    8    8   10   11   11   13   14   15   16   17   21   30   33   35   42   45   47 
LCS_GDT     S      32     S      32      8   10   18     6    8    8    8    8   10   11   11   13   15   17   18   25   25   30   33   38   42   45   49 
LCS_GDT     N      33     N      33      8   10   18     6    8    8    8    8   10   11   11   13   15   17   25   28   30   33   38   41   45   48   50 
LCS_GDT     L      34     L      34      8   10   18     6    8    8    8    8   10   11   11   15   16   20   25   30   31   35   38   41   45   48   50 
LCS_GDT     C      35     C      35      8   10   18     6    8    8    8    8   10   11   11   12   15   17   22   25   29   33   35   41   45   48   50 
LCS_GDT     S      36     S      36      8   10   18     6    8    8    8    8   10   11   12   13   15   17   18   20   22   29   30   38   40   45   48 
LCS_GDT     W      37     W      37      8   10   18     5    8    8    8    8   10   11   12   13   15   17   18   20   21   22   25   29   31   39   43 
LCS_GDT     R      38     R      38      8   10   17     5    8    8    8    8   10   11   11   12   14   16   18   20   21   28   30   38   40   45   48 
LCS_GDT     F      39     F      39      3    9   17     0    3    3    4    6    8    9   11   12   14   15   16   17   19   21   23   25   28   31   34 
LCS_GDT     L      40     L      40      3    5   17     0    3    4    4    5    6    8   11   12   14   15   16   16   19   21   24   25   28   31   34 
LCS_GDT     Y      41     Y      41      5    5   17     3    4    5    5    5    7    9   11   12   14   15   16   16   19   21   24   25   28   31   32 
LCS_GDT     D      42     D      42      5    5   17     3    4    5    5    6    8    9   10   12   13   15   16   16   19   20   23   25   34   39   42 
LCS_GDT     T      43     T      43      5    7   17     3    4    5    6    7    8    9   11   12   13   15   16   16   19   21   24   25   28   31   42 
LCS_GDT     Q      44     Q      44      5    7   17     3    4    5    6    8    8    9   11   12   13   15   16   16   19   21   24   25   28   39   42 
LCS_GDT     F      45     F      45      5    7   17     3    4    5    6    8    8    8    9   12   13   15   16   16   19   21   24   34   39   42   47 
LCS_GDT     A      46     A      46      3    7   23     3    3    5    6    8    8    9   10   10   11   14   17   18   20   32   33   42   47   50   53 
LCS_GDT     V      47     V      47      3    7   23     3    3    5    6    8    8    9   15   19   20   22   23   27   30   39   42   47   50   52   54 
LCS_GDT     I      48     I      48      3    7   23     3    4    5    6    8   13   16   19   20   22   22   23   25   26   32   42   47   50   52   53 
LCS_GDT     D      49     D      49      3    7   23     3    3    5    7    8   10   15   19   20   22   22   23   24   25   25   35   40   42   45   46 
LCS_GDT     D      50     D      50      3    7   23     3    3    4    4    8    8    9   11   11   12   14   15   21   22   25   25   40   42   45   46 
LCS_GDT     F      51     F      51      3    8   23     3    4    5    7    8   11   15   19   20   22   22   23   25   30   32   42   47   48   49   52 
LCS_GDT     L      52     L      52      3    8   23     3    4    5    7    8   13   18   21   24   29   32   35   39   43   45   48   49   52   54   56 
LCS_GDT     V      53     V      53      3    8   23     3    3    5    7    8   13   16   20   25   29   32   36   39   43   45   48   49   52   54   56 
LCS_GDT     F      54     F      54      4    8   23     3    4    5    6    8   13   16   19   20   24   30   34   36   39   44   48   49   52   54   56 
LCS_GDT     K      55     K      55      4    8   23     3    4    5    7    8   10   16   19   20   22   22   23   27   29   33   39   47   50   54   56 
LCS_GDT     F      56     F      56      4    8   23     3    4    5    7    8   13   16   19   20   22   22   23   27   29   32   36   47   50   54   56 
LCS_GDT     W      57     W      57      4    8   23     2    4    5    7    8   10   16   19   20   22   22   23   24   25   27   31   35   37   39   43 
LCS_GDT     A      58     A      58      4    9   23     3    4    4    9   10   13   16   19   20   22   22   23   27   29   32   36   47   50   54   56 
LCS_GDT     G      59     G      59      6    9   23     3    5    6    9   10   13   16   19   20   22   22   23   26   29   31   33   37   41   42   48 
LCS_GDT     E      60     E      60      6    9   23     3    5    6    9   10   13   16   19   20   22   22   23   27   29   31   34   37   41   44   49 
LCS_GDT     Q      61     Q      61      6    9   34     3    5    6    9   10   13   16   19   20   22   22   23   27   29   33   41   47   50   54   56 
LCS_GDT     L      62     L      62      6    9   36     3    5    6    9   10   11   14   16   20   22   22   25   31   34   39   43   47   51   54   56 
LCS_GDT     A      63     A      63      6    9   44     3    5    6    9   10   13   16   19   21   27   32   34   36   39   43   45   49   52   54   56 
LCS_GDT     Y      64     Y      64      6    9   44     3    5    6    9   12   17   23   27   28   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     M      65     M      65      6    9   44     4    8   17   20   23   24   26   27   28   31   32   36   39   43   45   48   49   52   54   56 
LCS_GDT     M      66     M      66      5    9   44     4    4    6    7   10   11   16   19   25   28   30   32   34   39   43   45   49   52   54   56 
LCS_GDT     P      67     P      67      5   24   44     4    9   17   20   23   24   26   27   28   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     V      68     V      68      5   24   44     4    4    5    6    7    8   17   24   28   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     G      69     G      69      5   24   44     0    4    5    6   23   24   26   27   28   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     N      70     N      70     18   24   44     0    4    7   19   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     G      71     G      71     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     D      72     D      72     18   24   44     3    9   16   18   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     L      73     L      73     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     K      74     K      74     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     A      75     A      75     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     V      76     V      76     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     L      77     L      77     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     R      78     R      78     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     K      79     K      79     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     L      80     L      80     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     I      81     I      81     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     E      82     E      82     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     D      83     D      83     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     A      84     A      84     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     D      85     D      85     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     K      86     K      86     18   24   44    15   15   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     E      87     E      87     18   24   44     3    6   17   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     K      88     K      88      4   24   44     3    4    8   12   17   22   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     H      89     H      89      4   24   44     3    6   15   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     N      90     N      90      4   24   44     2    6   15   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     F      91     F      91      5   24   44     0    4    6    6   10   19   26   26   28   31   32   36   38   41   44   48   49   52   54   56 
LCS_GDT     C      92     C      92      5   24   44     3    4   14   20   23   24   26   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     M      93     M      93      5   18   44     3    4    9   15   19   22   25   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     L      94     L      94      5   18   44     3    6   12   16   17   21   25   27   29   31   33   36   39   43   45   48   49   52   53   56 
LCS_GDT     G      95     G      95      5   18   44     3    4    6    7   10   14   17   18   19   23   28   33   34   38   43   46   49   51   53   55 
LCS_GDT     V      96     V      96     14   18   44     3    5   13   16   17   21   25   27   29   30   33   36   38   43   45   48   49   52   53   55 
LCS_GDT     C      97     C      97     14   18   44     5   12   13   14   17   17   18   19   20   26   31   32   35   38   41   43   47   49   51   53 
LCS_GDT     S      98     S      98     14   18   44    11   12   13   16   17   20   24   27   29   30   32   35   37   39   43   46   49   51   52   55 
LCS_GDT     N      99     N      99     14   18   44    11   12   13   16   17   19   22   27   29   30   32   36   37   39   43   46   49   51   53   55 
LCS_GDT     M     100     M     100     14   18   44    11   12   13   16   17   20   25   27   29   30   33   36   38   43   45   48   49   52   53   55 
LCS_GDT     R     101     R     101     14   18   44    11   12   13   16   18   21   25   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     A     102     A     102     14   18   44    11   12   13   16   18   21   25   27   29   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     D     103     D     103     14   18   44    11   12   13   16   17   17   21   25   28   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     L     104     L     104     14   18   44    11   12   13   16   17   19   23   27   28   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     E     105     E     105     14   18   44    11   12   13   16   17   19   21   25   28   31   33   36   39   43   45   48   49   52   54   56 
LCS_GDT     A     106     A     106     14   18   44    11   12   13   16   17   17   18   19   28   30   32   36   39   43   45   48   49   52   54   56 
LCS_GDT     I     107     I     107     14   18   44    11   12   13   16   17   17   18   19   23   26   28   32   38   42   45   48   49   52   53   55 
LCS_GDT     L     108     L     108     14   18   43    11   12   13   16   17   17   18   19   23   26   28   32   38   42   45   48   49   52   54   56 
LCS_GDT     P     109     P     109     14   18   43     3    9   13   16   17   17   18   19   23   26   30   35   39   43   45   48   49   52   54   56 
LCS_GDT     E     110     E     110     14   18   43     3    4    7   16   17   17   18   19   23   26   30   35   39   43   45   48   49   52   54   56 
LCS_GDT     R     111     R     111      4   17   43     3    4    4    5   10   11   13   23   24   28   32   36   39   43   45   48   49   52   54   56 
LCS_GDT     F     112     F     112      4   17   43     3    6   12   16   17   17   18   22   25   28   32   36   39   43   45   48   49   52   54   56 
LCS_GDT     I     113     I     113      4    6   34     3    4    5    7   13   16   17   19   19   20   25   29   34   41   43   48   49   52   53   56 
LCS_GDT     F     114     F     114      4    6   28     3    3    5    9   10   11   14   14   17   20   25   29   39   41   43   45   49   52   54   56 
LCS_GDT     T     115     T     115      4    6   25     3    5    6    9   10   11   14   16   20   22   22   24   34   37   42   44   49   51   54   56 
LCS_GDT     E     116     E     116      4    6   24     3    3    5    6    8   13   16   19   20   22   30   34   39   41   43   45   49   52   54   56 
LCS_GDT     D     117     D     117      3    6   17     0    3    5    6    7   13   16   19   20   22   22   23   34   37   39   44   49   51   54   56 
LCS_GDT     K     290     K     290      3    3    9     0    3    3    3    3    3    4    5    6    7    7    7    8   12   14   17   19   19   21   22 
LCS_GDT     Y     291     Y     291      3    3    9     3    3    3    3    3    4    6    6    6    8    9   10   12   13   15   17   19   20   21   24 
LCS_GDT     M     292     M     292      3    3    9     3    3    3    3    4    5    6    6    6    7    7    8    8    9    9   14   15   15   15   22 
LCS_GDT     A     293     A     293      3    4    9     3    3    3    3    4    5    6    6    6    7    7   10   10   10   10   14   15   15   15   22 
LCS_GDT     C     294     C     294      4    5    9     3    4    4    5    5    6    6    8    8    8    9   10   10   10   12   14   19   19   20   25 
LCS_GDT     L     295     L     295      4    5    9     3    4    4    5    5    6    6   12   13   15   15   19   20   21   22   22   22   23   25   26 
LCS_GDT     K     296     K     296      4    5    9     3    4    4    5    6    7    9   11   14   16   16   19   20   21   22   22   22   22   24   26 
LCS_GDT     D     297     D     297      4    5    9     3    4    4    8    9   10   12   13   14   16   16   16   17   21   22   22   22   22   24   26 
LCS_GDT     H     298     H     298      0    5    9     0    0    8   10   12   12   13   13   14   15   15   16   16   17   19   20   21   21   23   25 
LCS_AVERAGE  LCS_A:  13.19  (   6.35   10.28   22.93 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     15     17     20     23     24     26     27     29     31     33     36     39     43     45     48     49     52     54     56 
GDT PERCENT_CA  11.90  11.90  13.49  15.87  18.25  19.05  20.63  21.43  23.02  24.60  26.19  28.57  30.95  34.13  35.71  38.10  38.89  41.27  42.86  44.44
GDT RMS_LOCAL    0.28   0.28   0.91   1.21   1.44   1.55   1.88   2.19   2.70   2.74   3.15   3.54   3.91   4.46   4.67   5.01   5.18   6.96   6.38   6.47
GDT RMS_ALL_CA  22.27  22.27  21.66  21.73  21.72  21.76  21.85  22.08  23.41  22.16  22.81  22.94  22.52  22.68  22.66  22.76  22.91  22.75  23.31  23.33

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         43.688
LGA    I       2      I       2         39.231
LGA    P       3      P       3         39.315
LGA    F       4      F       4         35.637
LGA    K       5      K       5         39.754
LGA    D       6      D       6         38.175
LGA    I       7      I       7         36.801
LGA    T       8      T       8         42.573
LGA    L       9      L       9         44.943
LGA    A      10      A      10         43.230
LGA    D      11      D      11         38.172
LGA    R      12      R      12         42.076
LGA    D      13      D      13         42.041
LGA    T      14      T      14         35.001
LGA    I      15      I      15         34.414
LGA    T      16      T      16         39.511
LGA    A      17      A      17         36.601
LGA    F      18      F      18         32.135
LGA    T      19      T      19         36.216
LGA    M      20      M      20         40.200
LGA    K      21      K      21         41.925
LGA    S      22      S      22         39.885
LGA    D      23      D      23         41.851
LGA    R      24      R      24         37.754
LGA    R      25      R      25         36.867
LGA    N      26      N      26         32.690
LGA    C      27      C      27         29.819
LGA    D      28      D      28         25.001
LGA    L      29      L      29         25.738
LGA    S      30      S      30         27.139
LGA    F      31      F      31         21.200
LGA    S      32      S      32         21.353
LGA    N      33      N      33         17.528
LGA    L      34      L      34         16.570
LGA    C      35      C      35         18.670
LGA    S      36      S      36         19.385
LGA    W      37      W      37         18.214
LGA    R      38      R      38         18.808
LGA    F      39      F      39         24.146
LGA    L      40      L      40         27.444
LGA    Y      41      Y      41         27.475
LGA    D      42      D      42         25.525
LGA    T      43      T      43         22.431
LGA    Q      44      Q      44         17.223
LGA    F      45      F      45         13.582
LGA    A      46      A      46         11.095
LGA    V      47      V      47         11.627
LGA    I      48      I      48         14.012
LGA    D      49      D      49         19.979
LGA    D      50      D      50         19.639
LGA    F      51      F      51         14.025
LGA    L      52      L      52          7.167
LGA    V      53      V      53          6.191
LGA    F      54      F      54          7.455
LGA    K      55      K      55         12.745
LGA    F      56      F      56         15.330
LGA    W      57      W      57         21.173
LGA    A      58      A      58         17.480
LGA    G      59      G      59         21.767
LGA    E      60      E      60         21.274
LGA    Q      61      Q      61         15.858
LGA    L      62      L      62         12.464
LGA    A      63      A      63          7.594
LGA    Y      64      Y      64          3.984
LGA    M      65      M      65          3.756
LGA    M      66      M      66          7.882
LGA    P      67      P      67          2.640
LGA    V      68      V      68          4.625
LGA    G      69      G      69          2.516
LGA    N      70      N      70          3.151
LGA    G      71      G      71          1.802
LGA    D      72      D      72          2.644
LGA    L      73      L      73          1.073
LGA    K      74      K      74          1.160
LGA    A      75      A      75          1.089
LGA    V      76      V      76          1.144
LGA    L      77      L      77          1.034
LGA    R      78      R      78          0.995
LGA    K      79      K      79          0.877
LGA    L      80      L      80          1.448
LGA    I      81      I      81          1.697
LGA    E      82      E      82          1.566
LGA    D      83      D      83          1.648
LGA    A      84      A      84          2.304
LGA    D      85      D      85          2.485
LGA    K      86      K      86          2.546
LGA    E      87      E      87          2.342
LGA    K      88      K      88          3.441
LGA    H      89      H      89          2.296
LGA    N      90      N      90          2.365
LGA    F      91      F      91          4.929
LGA    C      92      C      92          2.880
LGA    M      93      M      93          5.470
LGA    L      94      L      94          8.131
LGA    G      95      G      95         12.885
LGA    V      96      V      96         10.713
LGA    C      97      C      97         15.700
LGA    S      98      S      98         14.045
LGA    N      99      N      99         12.061
LGA    M     100      M     100          9.173
LGA    R     101      R     101          7.948
LGA    A     102      A     102          6.492
LGA    D     103      D     103          5.827
LGA    L     104      L     104          3.979
LGA    E     105      E     105          5.407
LGA    A     106      A     106          5.767
LGA    I     107      I     107          8.459
LGA    L     108      L     108          9.258
LGA    P     109      P     109         10.550
LGA    E     110      E     110         11.012
LGA    R     111      R     111          8.390
LGA    F     112      F     112          9.710
LGA    I     113      I     113         11.441
LGA    F     114      F     114         10.229
LGA    T     115      T     115         11.382
LGA    E     116      E     116          8.837
LGA    D     117      D     117         13.320
LGA    K     290      K     290         26.357
LGA    Y     291      Y     291         25.009
LGA    M     292      M     292         25.230
LGA    A     293      A     293         28.658
LGA    C     294      C     294         24.979
LGA    L     295      L     295         26.162
LGA    K     296      K     296         28.359
LGA    D     297      D     297         30.494
LGA    H     298      H     298         33.754

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     27    2.19    21.825    18.892     1.181

LGA_LOCAL      RMSD =  2.186  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.340  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 17.678  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.623429 * X  +  -0.777221 * Y  +   0.085232 * Z  +  41.136940
  Y_new =   0.720360 * X  +  -0.528570 * Y  +   0.449105 * Z  +  48.109451
  Z_new =  -0.304003 * X  +   0.341383 * Y  +   0.889404 * Z  +   0.326206 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.366492   -2.775100  [ DEG:    20.9985   -159.0015 ]
  Theta =   0.308892    2.832701  [ DEG:    17.6982    162.3018 ]
  Phi   =   2.284187   -0.857406  [ DEG:   130.8743    -49.1257 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS393_5-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS393_5-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   27   2.19  18.892    17.68
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS393_5-D1
PFRMAT TS
TARGET T0372
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1       9.383  34.571 -16.575  1.00 25.00           C
ATOM      2  CA  ILE     2      12.471  36.731 -16.136  1.00 25.00           C
ATOM      3  CA  PRO     3      13.927  40.261 -15.664  1.00 25.00           C
ATOM      4  CA  PHE     4      16.887  41.403 -17.760  1.00 25.00           C
ATOM      5  CA  LYS     5      16.265  43.903 -20.559  1.00 25.00           C
ATOM      6  CA  ASP     6      17.650  46.917 -18.817  1.00 25.00           C
ATOM      7  CA  ILE     7      21.270  45.848 -19.106  1.00 25.00           C
ATOM      8  CA  THR     8      21.527  47.804 -22.389  1.00 25.00           C
ATOM      9  CA  LEU     9      24.618  49.405 -23.967  1.00 25.00           C
ATOM     10  CA  ALA    10      26.652  46.558 -22.336  1.00 25.00           C
ATOM     11  CA  ASP    11      29.114  44.258 -20.552  1.00 25.00           C
ATOM     12  CA  ARG    12      31.092  44.012 -23.823  1.00 25.00           C
ATOM     13  CA  ASP    13      31.597  47.808 -23.831  1.00 25.00           C
ATOM     14  CA  THR    14      32.818  47.677 -20.203  1.00 25.00           C
ATOM     15  CA  ILE    15      35.262  44.870 -21.101  1.00 25.00           C
ATOM     16  CA  THR    16      36.566  46.919 -24.063  1.00 25.00           C
ATOM     17  CA  ALA    17      37.042  49.958 -21.782  1.00 25.00           C
ATOM     18  CA  PHE    18      38.947  47.796 -19.258  1.00 25.00           C
ATOM     19  CA  THR    19      41.183  46.450 -22.061  1.00 25.00           C
ATOM     20  CA  MET    20      41.876  50.022 -23.257  1.00 25.00           C
ATOM     21  CA  LYS    21      43.141  52.761 -25.576  1.00 25.00           C
ATOM     22  CA  SER    22      46.531  54.267 -24.836  1.00 25.00           C
ATOM     23  CA  ASP    23      49.949  54.916 -23.261  1.00 25.00           C
ATOM     24  CA  ARG    24      50.236  57.401 -20.415  1.00 25.00           C
ATOM     25  CA  ARG    25      49.534  56.206 -16.855  1.00 25.00           C
ATOM     26  CA  ASN    26      50.550  55.362 -13.237  1.00 25.00           C
ATOM     27  CA  CYS    27      50.785  55.724  -9.423  1.00 25.00           C
ATOM     28  CA  ASP    28      52.398  56.190  -5.998  1.00 25.00           C
ATOM     29  CA  LEU    29      55.418  53.925  -6.711  1.00 25.00           C
ATOM     30  CA  SER    30      56.861  50.428  -6.316  1.00 25.00           C
ATOM     31  CA  PHE    31      53.534  49.409  -4.762  1.00 25.00           C
ATOM     32  CA  SER    32      50.236  47.518  -5.225  1.00 25.00           C
ATOM     33  CA  ASN    33      48.654  49.529  -2.376  1.00 25.00           C
ATOM     34  CA  LEU    34      49.864  52.792  -3.975  1.00 25.00           C
ATOM     35  CA  CYS    35      48.388  51.718  -7.342  1.00 25.00           C
ATOM     36  CA  SER    36      45.053  50.899  -5.647  1.00 25.00           C
ATOM     37  CA  TRP    37      45.049  54.327  -3.942  1.00 25.00           C
ATOM     38  CA  ARG    38      45.748  56.027  -7.302  1.00 25.00           C
ATOM     39  CA  PHE    39      47.727  59.111  -8.210  1.00 25.00           C
ATOM     40  CA  LEU    40      50.803  60.720  -9.661  1.00 25.00           C
ATOM     41  CA  TYR    41      53.771  62.308 -11.405  1.00 25.00           C
ATOM     42  CA  ASP    42      57.516  62.145 -10.994  1.00 25.00           C
ATOM     43  CA  THR    43      56.739  62.063  -7.230  1.00 25.00           C
ATOM     44  CA  GLN    44      57.437  60.810  -3.670  1.00 25.00           C
ATOM     45  CA  PHE    45      55.318  60.577  -0.519  1.00 25.00           C
ATOM     46  CA  ALA    46      55.315  56.837  -1.355  1.00 25.00           C
ATOM     47  CA  VAL    47      53.220  54.157   0.364  1.00 25.00           C
ATOM     48  CA  ILE    48      50.840  51.822   2.135  1.00 25.00           C
ATOM     49  CA  ASP    49      49.645  48.221   2.811  1.00 25.00           C
ATOM     50  CA  ASP    50      46.289  46.728   1.847  1.00 25.00           C
ATOM     51  CA  PHE    51      46.604  50.491   1.352  1.00 25.00           C
ATOM     52  CA  LEU    52      44.178  52.905   3.125  1.00 25.00           C
ATOM     53  CA  VAL    53      41.565  51.292   5.382  1.00 25.00           C
ATOM     54  CA  PHE    54      41.753  50.862   9.139  1.00 25.00           C
ATOM     55  CA  LYS    55      39.791  53.331  11.241  1.00 25.00           C
ATOM     56  CA  PHE    56      37.111  51.969  13.551  1.00 25.00           C
ATOM     57  CA  TRP    57      34.471  51.453  16.208  1.00 25.00           C
ATOM     58  CA  ALA    58      33.246  48.569  14.035  1.00 25.00           C
ATOM     59  CA  GLY    59      29.615  47.535  14.009  1.00 25.00           C
ATOM     60  CA  GLU    60      29.912  43.898  12.774  1.00 25.00           C
ATOM     61  CA  GLN    61      30.443  45.487   9.374  1.00 25.00           C
ATOM     62  CA  LEU    62      32.106  43.726   6.393  1.00 25.00           C
ATOM     63  CA  ALA    63      33.543  46.927   4.820  1.00 25.00           C
ATOM     64  CA  TYR    64      35.431  49.550   2.877  1.00 25.00           C
ATOM     65  CA  MET    65      38.390  51.290   1.174  1.00 25.00           C
ATOM     66  CA  MET    66      39.926  54.721   0.874  1.00 25.00           C
ATOM     67  CA  PRO    67      36.985  56.232   2.719  1.00 25.00           C
ATOM     68  CA  VAL    68      34.518  58.592   1.006  1.00 25.00           C
ATOM     69  CA  GLY    69      35.541  61.274   3.549  1.00 25.00           C
ATOM     70  CA  ASN    70      31.908  62.394   4.012  1.00 25.00           C
ATOM     71  CA  GLY    71      33.234  65.583   2.410  1.00 25.00           C
ATOM     72  CA  ASP    72      34.012  64.723  -1.230  1.00 25.00           C
ATOM     73  CA  LEU    73      31.172  62.110  -1.102  1.00 25.00           C
ATOM     74  CA  LYS    74      29.960  62.492  -4.714  1.00 25.00           C
ATOM     75  CA  ALA    75      33.563  63.038  -5.892  1.00 25.00           C
ATOM     76  CA  VAL    76      34.685  59.908  -3.992  1.00 25.00           C
ATOM     77  CA  LEU    77      31.852  57.891  -5.597  1.00 25.00           C
ATOM     78  CA  ARG    78      32.875  59.163  -9.061  1.00 25.00           C
ATOM     79  CA  LYS    79      36.513  58.181  -8.375  1.00 25.00           C
ATOM     80  CA  LEU    80      35.387  54.690  -7.271  1.00 25.00           C
ATOM     81  CA  ILE    81      33.302  54.327 -10.462  1.00 25.00           C
ATOM     82  CA  GLU    82      36.313  55.385 -12.580  1.00 25.00           C
ATOM     83  CA  ASP    83      38.513  52.823 -10.776  1.00 25.00           C
ATOM     84  CA  ALA    84      35.899  50.095 -11.407  1.00 25.00           C
ATOM     85  CA  ASP    85      35.767  51.047 -15.115  1.00 25.00           C
ATOM     86  CA  LYS    86      39.587  50.884 -15.318  1.00 25.00           C
ATOM     87  CA  GLU    87      40.994  48.784 -12.454  1.00 25.00           C
ATOM     88  CA  LYS    88      41.869  45.114 -13.072  1.00 25.00           C
ATOM     89  CA  HIS    89      38.252  44.318 -12.205  1.00 25.00           C
ATOM     90  CA  ASN    90      34.750  44.826 -10.813  1.00 25.00           C
ATOM     91  CA  PHE    91      36.414  45.550  -7.504  1.00 25.00           C
ATOM     92  CA  CYS    92      33.049  47.139  -6.966  1.00 25.00           C
ATOM     93  CA  MET    93      29.592  48.760  -6.463  1.00 25.00           C
ATOM     94  CA  LEU    94      26.843  50.007  -4.218  1.00 25.00           C
ATOM     95  CA  GLY    95      23.786  52.086  -5.095  1.00 25.00           C
ATOM     96  CA  VAL    96      21.219  49.357  -4.355  1.00 25.00           C
ATOM     97  CA  CYS    97      18.946  50.623  -7.036  1.00 25.00           C
ATOM     98  CA  SER    98      15.778  52.220  -5.737  1.00 25.00           C
ATOM     99  CA  ASN    99      15.652  52.039  -1.913  1.00 25.00           C
ATOM    100  CA  MET   100      19.344  53.038  -1.720  1.00 25.00           C
ATOM    101  CA  ARG   101      18.692  55.995  -4.065  1.00 25.00           C
ATOM    102  CA  ALA   102      15.731  57.092  -1.898  1.00 25.00           C
ATOM    103  CA  ASP   103      17.915  56.877   1.240  1.00 25.00           C
ATOM    104  CA  LEU   104      20.623  58.977  -0.470  1.00 25.00           C
ATOM    105  CA  GLU   105      18.002  61.586  -1.469  1.00 25.00           C
ATOM    106  CA  ALA   106      16.709  61.703   2.134  1.00 25.00           C
ATOM    107  CA  ILE   107      20.284  62.176   3.427  1.00 25.00           C
ATOM    108  CA  LEU   108      21.952  64.047   0.596  1.00 25.00           C
ATOM    109  CA  PRO   109      20.871  66.552  -2.098  1.00 25.00           C
ATOM    110  CA  GLU   110      20.224  64.139  -4.952  1.00 25.00           C
ATOM    111  CA  ARG   111      19.952  61.025  -7.120  1.00 25.00           C
ATOM    112  CA  PHE   112      23.466  60.312  -8.218  1.00 25.00           C
ATOM    113  CA  ILE   113      25.715  58.117  -6.160  1.00 25.00           C
ATOM    114  CA  PHE   114      25.293  56.588  -2.705  1.00 25.00           C
ATOM    115  CA  THR   115      24.007  54.782   0.382  1.00 25.00           C
ATOM    116  CA  GLU   116      23.421  51.392   2.031  1.00 25.00           C
ATOM    117  CA  ASP   117      20.126  52.274   3.582  1.00 25.00           C
ATOM    290  CA  LYS   290      45.965  29.173   8.262  1.00 25.00           C
ATOM    291  CA  TYR   291      45.070  31.630   5.464  1.00 25.00           C
ATOM    292  CA  MET   292      45.644  28.896   2.846  1.00 25.00           C
ATOM    293  CA  ALA   293      43.406  26.498   4.822  1.00 25.00           C
ATOM    294  CA  CYS   294      40.675  29.176   5.024  1.00 25.00           C
ATOM    295  CA  LEU   295      40.927  29.753   1.247  1.00 25.00           C
ATOM    296  CA  LYS   296      40.055  26.963  -1.131  1.00 25.00           C
ATOM    297  CA  ASP   297      43.795  26.452  -1.351  1.00 25.00           C
ATOM    298  CA  HIS   298      47.273  25.629  -2.590  1.00 25.00           C
TER
END
