
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS599_1-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS599_1-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    53        50 - 102         5.00    22.52
  LCS_AVERAGE:     32.75

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        41 - 69          1.98    20.93
  LCS_AVERAGE:     15.72

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        71 - 90          0.97    20.55
  LONGEST_CONTINUOUS_SEGMENT:    20        72 - 91          0.77    20.50
  LCS_AVERAGE:      8.15

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      4    6   36     0    4    4    5    5    6   10   17   20   21   30   32   35   38   45   49   54   55   56   56 
LCS_GDT     I       2     I       2      4    6   36     0    4    4    6   10   14   21   29   35   37   42   46   49   51   52   54   56   58   65   69 
LCS_GDT     P       3     P       3      4    6   36     3    4    4    5   11   14   15   17   20   35   42   46   48   51   52   54   56   60   65   69 
LCS_GDT     F       4     F       4      4    6   36     3    4    5    8   15   26   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     K       5     K       5      4    6   36     3    4    5    8   12   15   16   19   27   32   39   44   47   49   51   53   57   61   65   69 
LCS_GDT     D       6     D       6      4    6   36     3    4    4    5   13   15   16   19   21   25   31   36   41   48   51   53   57   61   65   69 
LCS_GDT     I       7     I       7      4    5   36     3    4    4    6   13   15   18   26   28   29   32   36   37   44   49   52   57   61   65   69 
LCS_GDT     T       8     T       8      4    5   36     3    4    6    8   13   15   17   26   28   29   32   33   37   43   46   51   57   61   65   69 
LCS_GDT     L       9     L       9      4    5   36     3    4    6    8   13   15   16   19   25   27   32   33   35   43   46   51   57   61   65   69 
LCS_GDT     A      10     A      10      4   18   36     3    4    5    8   13   18   22   26   28   29   32   36   38   43   46   51   57   61   65   69 
LCS_GDT     D      11     D      11     10   21   36     7   10   12   17   19   21   22   24   28   29   32   33   38   42   45   50   55   61   65   69 
LCS_GDT     R      12     R      12     11   21   36     7   10   13   17   19   20   22   26   28   29   32   33   35   42   44   50   55   58   65   69 
LCS_GDT     D      13     D      13     11   21   36     7   10   13   17   19   20   22   26   28   29   32   33   35   38   43   50   55   58   63   69 
LCS_GDT     T      14     T      14     11   21   36     7   10   13   17   19   20   22   26   28   29   32   33   35   38   43   50   55   60   65   69 
LCS_GDT     I      15     I      15     11   21   36     7   10   13   17   19   20   22   26   28   29   32   33   35   38   44   50   55   58   65   69 
LCS_GDT     T      16     T      16     11   21   36     7   10   13   17   19   20   22   26   28   29   32   33   35   36   38   44   50   57   63   69 
LCS_GDT     A      17     A      17     11   21   36     7   10   13   17   19   20   22   26   28   29   32   33   35   36   38   42   45   50   53   69 
LCS_GDT     F      18     F      18     11   21   36     5   10   13   17   19   20   22   26   28   29   32   33   35   36   38   42   49   57   63   69 
LCS_GDT     T      19     T      19     11   21   36     5   10   13   17   19   20   22   26   28   29   32   33   35   36   38   42   46   57   62   69 
LCS_GDT     M      20     M      20     11   21   36     5    8   13   17   19   20   22   26   28   29   32   33   35   36   38   42   45   50   53   61 
LCS_GDT     K      21     K      21     11   21   36     5    8   13   17   19   20   22   26   28   29   32   33   35   36   38   42   45   50   53   59 
LCS_GDT     S      22     S      22     11   21   36     5    8   13   17   19   20   22   24   28   29   32   33   35   36   38   42   45   50   54   61 
LCS_GDT     D      23     D      23      8   21   36     3    5   12   17   19   20   22   26   28   29   32   33   35   36   38   42   45   48   51   54 
LCS_GDT     R      24     R      24      8   21   36     3    7   12   17   19   20   22   26   28   29   32   33   35   36   38   42   45   48   51   55 
LCS_GDT     R      25     R      25      8   21   36     3    8   13   17   19   20   22   26   28   29   32   33   35   36   38   42   45   48   51   53 
LCS_GDT     N      26     N      26      6   21   36     3    5   11   13   17   20   22   26   28   29   32   33   35   36   38   42   45   48   51   53 
LCS_GDT     C      27     C      27      4   21   36     3    3   13   17   19   20   22   26   28   29   32   33   35   36   38   42   45   48   51   54 
LCS_GDT     D      28     D      28      4   21   36     3    3    7   16   19   20   22   26   28   29   32   33   35   36   38   42   45   48   51   53 
LCS_GDT     L      29     L      29      6   21   43     4    6    6   12   19   20   22   26   28   29   32   33   35   36   38   42   45   50   51   54 
LCS_GDT     S      30     S      30      6   21   43     4    6    8   11   13   20   22   26   28   29   32   33   35   36   40   47   49   50   52   55 
LCS_GDT     F      31     F      31      6   21   43     4   10   12   17   19   20   22   26   28   29   32   33   35   36   43   46   49   57   63   69 
LCS_GDT     S      32     S      32      6    7   43     4    6    6    8    9   12   15   21   26   29   32   40   42   45   46   47   49   51   58   65 
LCS_GDT     N      33     N      33      6    7   43     4    6    6    8    9   11   19   21   26   34   38   42   44   45   46   47   49   51   53   58 
LCS_GDT     L      34     L      34      6    7   43     4    6    6    8   13   15   20   26   28   33   36   41   44   45   46   49   55   58   64   69 
LCS_GDT     C      35     C      35      3    3   43     0    3    6    6    9   12   15   22   32   36   40   42   44   45   46   50   55   61   65   69 
LCS_GDT     S      36     S      36      3    4   43     2    3    7   12   15   19   21   28   32   36   40   42   44   45   46   50   55   61   65   69 
LCS_GDT     W      37     W      37      3    4   43     3    3    6   11   18   22   29   32   36   37   40   42   44   45   46   50   57   61   65   69 
LCS_GDT     R      38     R      38      4    4   43     4    4    5    8   11   15   16   18   27   34   40   42   44   48   51   53   57   61   65   69 
LCS_GDT     F      39     F      39      4    4   43     4    4    4    4   11   18   22   29   36   37   40   42   44   45   46   51   57   61   65   69 
LCS_GDT     L      40     L      40      4   27   43     4    4    9   15   20   27   30   33   36   37   40   42   44   45   46   51   57   61   65   69 
LCS_GDT     Y      41     Y      41      7   29   43     4    4   11   15   21   28   32   33   36   37   40   42   45   49   51   53   57   61   65   69 
LCS_GDT     D      42     D      42      7   29   43     4   10   16   19   24   28   32   33   36   37   40   42   44   45   46   47   51   58   65   69 
LCS_GDT     T      43     T      43      7   29   43     4   10   16   19   24   28   32   33   36   37   40   42   44   45   46   47   54   61   65   69 
LCS_GDT     Q      44     Q      44      7   29   43     4   10   16   19   24   28   32   33   36   37   40   42   44   45   46   47   49   51   53   57 
LCS_GDT     F      45     F      45      7   29   43     4   10   16   19   24   28   32   33   36   37   40   42   44   45   46   47   49   51   53   59 
LCS_GDT     A      46     A      46      8   29   43     4    9   16   19   24   28   32   33   36   37   40   42   44   45   46   47   49   51   53   54 
LCS_GDT     V      47     V      47      8   29   43     4    9   16   19   24   28   32   33   36   37   40   42   44   45   46   47   49   51   53   55 
LCS_GDT     I      48     I      48      8   29   43     4   10   16   19   24   28   32   33   36   37   40   42   44   45   46   47   49   51   53   55 
LCS_GDT     D      49     D      49      9   29   52     4    6   11   17   23   28   32   33   36   37   40   42   44   45   46   47   49   51   53   55 
LCS_GDT     D      50     D      50     10   29   53     3    9   16   19   24   28   32   33   36   37   40   42   45   51   52   54   56   60   64   68 
LCS_GDT     F      51     F      51     10   29   53     4   10   16   19   24   28   32   33   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     L      52     L      52     10   29   53     4   10   16   19   24   28   32   33   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     V      53     V      53     10   29   53     4   10   16   19   24   28   32   33   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     F      54     F      54     10   29   53     4   10   16   19   24   28   32   34   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     K      55     K      55     10   29   53     4   10   16   19   24   28   32   33   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     F      56     F      56     10   29   53     4   10   16   19   24   29   32   34   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     W      57     W      57     10   29   53     4   10   16   19   24   29   32   34   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     A      58     A      58     10   29   53     4    7   19   21   24   28   32   33   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     G      59     G      59     10   29   53     4   10   16   19   24   28   32   34   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     E      60     E      60      7   29   53     4    6   13   19   24   28   32   33   36   37   40   45   49   51   52   54   56   58   60   62 
LCS_GDT     Q      61     Q      61      7   29   53     4    5    9   11   24   28   32   33   36   37   40   45   49   51   52   54   56   58   64   68 
LCS_GDT     L      62     L      62      7   29   53     4    6   12   15   22   28   32   33   36   37   40   45   49   51   52   54   56   58   61   67 
LCS_GDT     A      63     A      63      7   29   53     4    5   12   19   24   28   32   33   36   37   40   45   49   51   52   54   56   60   64   69 
LCS_GDT     Y      64     Y      64      7   29   53     3    7   12   19   24   28   32   33   36   37   40   46   49   51   52   54   56   61   65   69 
LCS_GDT     M      65     M      65      7   29   53     3    5    9   11   16   27   32   33   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     M      66     M      66      7   29   53     4    5    9   16   24   28   32   33   36   37   40   42   46   50   52   54   57   61   65   69 
LCS_GDT     P      67     P      67      5   29   53     4    5    5   13   24   28   32   33   36   37   40   46   49   51   52   54   57   61   65   69 
LCS_GDT     V      68     V      68      5   29   53     4    9   14   19   25   29   32   34   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     G      69     G      69      5   29   53     4    5   14   19   25   29   32   34   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     N      70     N      70      4   26   53     2    8   15   19   25   29   32   34   36   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     G      71     G      71     20   26   53     3    7   17   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     D      72     D      72     20   26   53    11   15   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     L      73     L      73     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     K      74     K      74     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     A      75     A      75     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     V      76     V      76     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     L      77     L      77     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     R      78     R      78     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     K      79     K      79     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     L      80     L      80     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     I      81     I      81     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     E      82     E      82     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     D      83     D      83     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     A      84     A      84     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     D      85     D      85     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     K      86     K      86     20   26   53    12   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     E      87     E      87     20   26   53     7   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     K      88     K      88     20   26   53     8   17   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     H      89     H      89     20   26   53     4   16   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     N      90     N      90     20   26   53     7   17   20   21   24   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     F      91     F      91     20   26   53     4   15   20   21   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     C      92     C      92      6   26   53     4   12   15   19   25   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     M      93     M      93      6   26   53     4    6   10   19   24   28   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     L      94     L      94     16   17   53     4   11   15   16   16   24   30   33   35   37   40   44   46   49   52   54   57   61   64   69 
LCS_GDT     G      95     G      95     16   17   53     4    6   15   16   16   16   22   26   31   37   39   40   43   44   48   52   54   57   59   61 
LCS_GDT     V      96     V      96     16   17   53     6   13   15   19   24   29   32   34   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     C      97     C      97     16   17   53     7   13   15   19   24   28   32   34   35   37   42   46   49   51   52   54   55   58   60   65 
LCS_GDT     S      98     S      98     16   17   53     7   13   15   18   25   29   32   34   35   37   42   46   49   51   52   54   57   61   64   69 
LCS_GDT     N      99     N      99     16   17   53     8   13   15   16   16   16   22   30   35   37   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     M     100     M     100     16   17   53     9   13   15   16   16   16   17   19   29   35   42   46   49   51   52   54   57   61   65   69 
LCS_GDT     R     101     R     101     16   17   53     9   13   15   16   17   22   25   29   35   36   40   45   47   51   52   54   57   61   65   69 
LCS_GDT     A     102     A     102     16   17   53     9   13   15   16   16   16   20   25   30   33   36   41   45   48   51   53   57   61   65   69 
LCS_GDT     D     103     D     103     16   17   41     9   13   15   16   16   16   17   18   20   21   22   23   25   40   47   53   56   60   65   69 
LCS_GDT     L     104     L     104     16   17   27     9   13   15   16   16   16   17   18   20   21   22   23   31   40   47   53   56   60   65   69 
LCS_GDT     E     105     E     105     16   17   27     9   13   15   16   16   16   17   18   20   21   24   28   34   39   43   50   55   58   65   69 
LCS_GDT     A     106     A     106     16   17   27     9   13   15   16   16   16   17   18   20   21   22   28   34   37   42   45   52   57   63   69 
LCS_GDT     I     107     I     107     16   17   27     9   13   15   16   16   16   17   18   21   26   29   32   33   35   38   40   44   51   53   59 
LCS_GDT     L     108     L     108     16   17   27     9   13   15   16   16   16   20   21   23   26   29   32   34   39   45   47   48   51   53   61 
LCS_GDT     P     109     P     109     16   17   27     3   10   15   16   16   16   17   18   20   23   26   42   44   44   45   47   48   51   54   63 
LCS_GDT     E     110     E     110      4   16   27     3    4    6    8   10   13   20   25   34   36   40   42   44   45   46   47   49   51   53   59 
LCS_GDT     R     111     R     111      7   12   26     6    7    7    8   19   23   29   32   35   36   40   42   44   45   46   47   49   50   52   55 
LCS_GDT     F     112     F     112      7   12   26     6    7    7    9   14   27   32   33   36   37   40   42   44   45   46   47   49   51   53   55 
LCS_GDT     I     113     I     113      7   12   23     6    7    7    8   12   22   32   33   36   37   40   42   44   45   46   47   49   50   52   55 
LCS_GDT     F     114     F     114      7   12   23     6    7    7    8   12   20   29   33   36   37   40   42   44   45   46   47   49   50   52   55 
LCS_GDT     T     115     T     115      7   12   22     6    7    7    8   10   14   22   31   31   37   38   41   44   45   46   47   49   50   52   54 
LCS_GDT     E     116     E     116      7   12   20     6    7    7    8   10   13   13   16   27   29   34   38   40   43   46   47   49   50   52   54 
LCS_GDT     D     117     D     117      7   12   20     4    7    7    8   10   13   13   16   18   21   26   35   37   39   41   43   44   47   50   51 
LCS_GDT     K     290     K     290      6    9    9     3    5    7    7    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     Y     291     Y     291      6    9    9     3    4    6    6    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     M     292     M     292      6    9    9     4    6    7    7    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     A     293     A     293      6    9    9     4    6    7    7    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     C     294     C     294      6    9    9     4    6    7    7    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     L     295     L     295      6    9    9     4    6    7    7    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     K     296     K     296      6    9    9     4    6    7    7    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     D     297     D     297      6    9    9     4    6    7    7    8    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_GDT     H     298     H     298      3    9    9     3    3    4    6    7    9    9    9    9    9    9    9    9    9    9    9    9    9    9    9 
LCS_AVERAGE  LCS_A:  18.87  (   8.15   15.72   32.75 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     17     20     21     25     29     32     34     36     37     42     46     49     51     52     54     57     61     65     69 
GDT PERCENT_CA   9.52  13.49  15.87  16.67  19.84  23.02  25.40  26.98  28.57  29.37  33.33  36.51  38.89  40.48  41.27  42.86  45.24  48.41  51.59  54.76
GDT RMS_LOCAL    0.30   0.60   0.77   0.94   1.68   1.97   2.18   2.36   2.73   2.70   3.38   3.80   4.25   4.40   4.47   4.67   6.00   6.31   6.76   7.00
GDT RMS_ALL_CA  20.53  20.50  20.50  20.85  22.02  22.62  23.03  23.03  20.35  24.27  23.28  22.90  22.80  22.61  22.52  22.72  20.74  20.51  20.05  19.86

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.877
LGA    I       2      I       2          5.643
LGA    P       3      P       3          6.867
LGA    F       4      F       4          3.484
LGA    K       5      K       5          8.522
LGA    D       6      D       6         13.013
LGA    I       7      I       7         14.861
LGA    T       8      T       8         18.744
LGA    L       9      L       9         20.297
LGA    A      10      A      10         20.439
LGA    D      11      D      11         18.826
LGA    R      12      R      12         23.751
LGA    D      13      D      13         22.965
LGA    T      14      T      14         17.577
LGA    I      15      I      15         19.268
LGA    T      16      T      16         24.744
LGA    A      17      A      17         23.313
LGA    F      18      F      18         20.622
LGA    T      19      T      19         23.519
LGA    M      20      M      20         27.542
LGA    K      21      K      21         26.743
LGA    S      22      S      22         24.530
LGA    D      23      D      23         29.514
LGA    R      24      R      24         27.088
LGA    R      25      R      25         30.957
LGA    N      26      N      26         30.312
LGA    C      27      C      27         30.021
LGA    D      28      D      28         28.459
LGA    L      29      L      29         27.459
LGA    S      30      S      30         31.117
LGA    F      31      F      31         26.512
LGA    S      32      S      32         28.521
LGA    N      33      N      33         27.241
LGA    L      34      L      34         20.325
LGA    C      35      C      35         19.661
LGA    S      36      S      36         18.825
LGA    W      37      W      37         16.638
LGA    R      38      R      38         11.923
LGA    F      39      F      39         13.761
LGA    L      40      L      40         12.334
LGA    Y      41      Y      41         10.216
LGA    D      42      D      42         11.957
LGA    T      43      T      43         10.846
LGA    Q      44      Q      44         12.598
LGA    F      45      F      45         12.075
LGA    A      46      A      46         14.576
LGA    V      47      V      47         14.543
LGA    I      48      I      48         15.534
LGA    D      49      D      49         14.279
LGA    D      50      D      50          9.357
LGA    F      51      F      51          6.658
LGA    L      52      L      52          5.966
LGA    V      53      V      53          5.636
LGA    F      54      F      54          3.805
LGA    K      55      K      55          4.944
LGA    F      56      F      56          1.631
LGA    W      57      W      57          2.201
LGA    A      58      A      58          4.405
LGA    G      59      G      59          3.966
LGA    E      60      E      60         10.268
LGA    Q      61      Q      61          9.098
LGA    L      62      L      62          9.458
LGA    A      63      A      63          8.417
LGA    Y      64      Y      64          6.975
LGA    M      65      M      65          5.966
LGA    M      66      M      66          7.771
LGA    P      67      P      67          5.791
LGA    V      68      V      68          3.729
LGA    G      69      G      69          3.764
LGA    N      70      N      70          1.637
LGA    G      71      G      71          1.766
LGA    D      72      D      72          3.108
LGA    L      73      L      73          2.685
LGA    K      74      K      74          1.850
LGA    A      75      A      75          1.151
LGA    V      76      V      76          1.684
LGA    L      77      L      77          1.318
LGA    R      78      R      78          0.441
LGA    K      79      K      79          1.502
LGA    L      80      L      80          1.611
LGA    I      81      I      81          0.503
LGA    E      82      E      82          1.680
LGA    D      83      D      83          2.598
LGA    A      84      A      84          1.731
LGA    D      85      D      85          1.327
LGA    K      86      K      86          3.392
LGA    E      87      E      87          3.498
LGA    K      88      K      88          1.035
LGA    H      89      H      89          2.435
LGA    N      90      N      90          2.850
LGA    F      91      F      91          1.982
LGA    C      92      C      92          1.551
LGA    M      93      M      93          3.994
LGA    L      94      L      94          5.919
LGA    G      95      G      95          8.123
LGA    V      96      V      96          2.408
LGA    C      97      C      97          3.464
LGA    S      98      S      98          3.791
LGA    N      99      N      99          5.931
LGA    M     100      M     100          7.859
LGA    R     101      R     101          8.754
LGA    A     102      A     102         13.354
LGA    D     103      D     103         16.538
LGA    L     104      L     104         16.973
LGA    E     105      E     105         20.582
LGA    A     106      A     106         24.709
LGA    I     107      I     107         27.246
LGA    L     108      L     108         26.821
LGA    P     109      P     109         29.659
LGA    E     110      E     110         33.704
LGA    R     111      R     111         33.310
LGA    F     112      F     112         28.824
LGA    I     113      I     113         29.927
LGA    F     114      F     114         28.055
LGA    T     115      T     115         28.509
LGA    E     116      E     116         28.866
LGA    D     117      D     117         29.874
LGA    K     290      K     290         55.399
LGA    Y     291      Y     291         58.206
LGA    M     292      M     292         57.852
LGA    A     293      A     293         59.652
LGA    C     294      C     294         59.963
LGA    L     295      L     295         62.480
LGA    K     296      K     296         61.618
LGA    D     297      D     297         64.304
LGA    H     298      H     298         66.851

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     34    2.36    25.000    23.359     1.380

LGA_LOCAL      RMSD =  2.363  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.020  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 17.023  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.948484 * X  +   0.228245 * Y  +  -0.219732 * Z  +  32.449371
  Y_new =   0.314941 * X  +   0.754755 * Y  +  -0.575463 * Z  +  41.225986
  Z_new =   0.034497 * X  +  -0.615020 * Y  +  -0.787757 * Z  +  31.711477 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.478717    0.662876  [ DEG:  -142.0200     37.9800 ]
  Theta =  -0.034504   -3.107089  [ DEG:    -1.9769   -178.0231 ]
  Phi   =   2.821000   -0.320592  [ DEG:   161.6314    -18.3686 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS599_1-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS599_1-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   34   2.36  23.359    17.02
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS599_1-D1
PFRMAT TS                                                                       
TARGET T0372                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      43.120  62.093   0.644  1.00  0.00              
ATOM      2  CA  ILE     2      42.354  60.258  -2.539  1.00  0.00              
ATOM      3  CA  PRO     3      41.199  56.326  -3.457  1.00  0.00              
ATOM      4  CA  PHE     4      43.621  53.734  -4.143  1.00  0.00              
ATOM      5  CA  LYS     5      44.518  51.563  -7.080  1.00  0.00              
ATOM      6  CA  ASP     6      46.368  53.448  -9.768  1.00  0.00              
ATOM      7  CA  ILE     7      47.686  56.372  -7.794  1.00  0.00              
ATOM      8  CA  THR     8      51.235  57.192  -8.865  1.00  0.00              
ATOM      9  CA  LEU     9      53.800  58.566  -6.403  1.00  0.00              
ATOM     10  CA  ALA    10      57.018  59.525  -8.074  1.00  0.00              
ATOM     11  CA  ASP    11      59.816  58.852  -5.671  1.00  0.00              
ATOM     12  CA  ARG    12      60.664  55.298  -6.875  1.00  0.00              
ATOM     13  CA  ASP    13      62.332  54.248  -3.652  1.00  0.00              
ATOM     14  CA  THR    14      59.388  55.453  -1.625  1.00  0.00              
ATOM     15  CA  ILE    15      56.827  53.759  -3.783  1.00  0.00              
ATOM     16  CA  THR    16      58.626  50.425  -3.631  1.00  0.00              
ATOM     17  CA  ALA    17      58.801  50.798   0.167  1.00  0.00              
ATOM     18  CA  PHE    18      55.092  51.561   0.339  1.00  0.00              
ATOM     19  CA  THR    19      54.152  48.526  -1.822  1.00  0.00              
ATOM     20  CA  MET    20      56.291  46.253   0.291  1.00  0.00              
ATOM     21  CA  LYS    21      54.730  47.462   3.504  1.00  0.00              
ATOM     22  CA  SER    22      51.173  47.018   2.363  1.00  0.00              
ATOM     23  CA  ASP    23      51.706  43.402   1.136  1.00  0.00              
ATOM     24  CA  ARG    24      50.616  43.992  -2.394  1.00  0.00              
ATOM     25  CA  ARG    25      51.489  41.401  -5.022  1.00  0.00              
ATOM     26  CA  ASN    26      52.437  43.325  -8.116  1.00  0.00              
ATOM     27  CA  CYS    27      50.086  42.192 -10.788  1.00  0.00              
ATOM     28  CA  ASP    28      50.771  44.829 -13.428  1.00  0.00              
ATOM     29  CA  LEU    29      52.518  47.232 -11.224  1.00  0.00              
ATOM     30  CA  SER    30      55.199  49.517 -12.388  1.00  0.00              
ATOM     31  CA  PHE    31      56.407  51.336  -9.304  1.00  0.00              
ATOM     32  CA  SER    32      54.986  54.668 -10.171  1.00  0.00              
ATOM     33  CA  ASN    33      51.555  53.399 -10.973  1.00  0.00              
ATOM     34  CA  LEU    34      50.731  50.855  -8.396  1.00  0.00              
ATOM     35  CA  CYS    35      48.565  47.934  -9.002  1.00  0.00              
ATOM     36  CA  SER    36      47.643  45.442  -6.442  1.00  0.00              
ATOM     37  CA  TRP    37      46.355  42.003  -7.127  1.00  0.00              
ATOM     38  CA  ARG    38      44.680  39.611  -4.862  1.00  0.00              
ATOM     39  CA  PHE    39      43.472  36.541  -6.727  1.00  0.00              
ATOM     40  CA  LEU    40      39.764  37.245  -6.782  1.00  0.00              
ATOM     41  CA  TYR    41      39.933  41.047  -7.239  1.00  0.00              
ATOM     42  CA  ASP    42      36.606  42.131  -6.066  1.00  0.00              
ATOM     43  CA  THR    43      36.469  45.477  -4.620  1.00  0.00              
ATOM     44  CA  GLN    44      33.647  46.613  -2.384  1.00  0.00              
ATOM     45  CA  PHE    45      33.084  50.078  -1.637  1.00  0.00              
ATOM     46  CA  ALA    46      30.847  51.252   1.178  1.00  0.00              
ATOM     47  CA  VAL    47      29.751  54.842   1.482  1.00  0.00              
ATOM     48  CA  ILE    48      28.476  56.264   4.691  1.00  0.00              
ATOM     49  CA  ASP    49      27.857  60.007   4.940  1.00  0.00              
ATOM     50  CA  ASP    50      31.382  61.404   4.841  1.00  0.00              
ATOM     51  CA  PHE    51      33.272  58.185   5.494  1.00  0.00              
ATOM     52  CA  LEU    52      34.519  55.855   2.839  1.00  0.00              
ATOM     53  CA  VAL    53      35.072  52.168   3.387  1.00  0.00              
ATOM     54  CA  PHE    54      36.803  50.070   1.221  1.00  0.00              
ATOM     55  CA  LYS    55      36.939  46.362   1.189  1.00  0.00              
ATOM     56  CA  PHE    56      39.396  44.285  -0.595  1.00  0.00              
ATOM     57  CA  TRP    57      39.108  40.649  -1.033  1.00  0.00              
ATOM     58  CA  ALA    58      42.287  38.613  -1.559  1.00  0.00              
ATOM     59  CA  GLY    59      42.361  35.314   0.237  1.00  0.00              
ATOM     60  CA  GLU    60      42.476  36.764   3.699  1.00  0.00              
ATOM     61  CA  GLN    61      40.289  39.771   3.541  1.00  0.00              
ATOM     62  CA  LEU    62      41.797  43.219   3.590  1.00  0.00              
ATOM     63  CA  ALA    63      39.842  46.149   5.042  1.00  0.00              
ATOM     64  CA  TYR    64      40.706  49.677   4.167  1.00  0.00              
ATOM     65  CA  MET    65      39.131  52.633   5.977  1.00  0.00              
ATOM     66  CA  MET    66      39.381  56.007   4.359  1.00  0.00              
ATOM     67  CA  PRO    67      38.206  59.276   5.960  1.00  0.00              
ATOM     68  CA  VAL    68      36.365  61.140   3.295  1.00  0.00              
ATOM     69  CA  GLY    69      36.325  64.875   3.392  1.00  0.00              
ATOM     70  CA  ASN    70      32.863  66.268   3.136  1.00  0.00              
ATOM     71  CA  GLY    71      33.059  67.985  -0.190  1.00  0.00              
ATOM     72  CA  ASP    72      35.137  65.641  -2.264  1.00  0.00              
ATOM     73  CA  LEU    73      33.588  62.282  -1.719  1.00  0.00              
ATOM     74  CA  LYS    74      31.509  62.015  -4.839  1.00  0.00              
ATOM     75  CA  ALA    75      34.470  62.811  -7.075  1.00  0.00              
ATOM     76  CA  VAL    76      36.650  60.276  -5.366  1.00  0.00              
ATOM     77  CA  LEU    77      34.159  57.534  -5.648  1.00  0.00              
ATOM     78  CA  ARG    78      33.537  58.180  -9.299  1.00  0.00              
ATOM     79  CA  LYS    79      37.217  58.138 -10.116  1.00  0.00              
ATOM     80  CA  LEU    80      37.663  54.873  -8.176  1.00  0.00              
ATOM     81  CA  ILE    81      34.804  53.221 -10.082  1.00  0.00              
ATOM     82  CA  GLU    82      36.309  54.317 -13.327  1.00  0.00              
ATOM     83  CA  ASP    83      39.744  53.009 -12.401  1.00  0.00              
ATOM     84  CA  ALA    84      38.453  49.639 -11.445  1.00  0.00              
ATOM     85  CA  ASP    85      36.620  49.410 -14.719  1.00  0.00              
ATOM     86  CA  LYS    86      39.682  50.316 -16.767  1.00  0.00              
ATOM     87  CA  GLU    87      41.840  47.731 -14.946  1.00  0.00              
ATOM     88  CA  LYS    88      39.201  45.013 -15.055  1.00  0.00              
ATOM     89  CA  HIS    89      38.495  45.001 -11.332  1.00  0.00              
ATOM     90  CA  ASN    90      35.041  44.503 -10.109  1.00  0.00              
ATOM     91  CA  PHE    91      33.993  47.228  -7.846  1.00  0.00              
ATOM     92  CA  CYS    92      30.677  47.075  -6.071  1.00  0.00              
ATOM     93  CA  MET    93      29.285  50.167  -4.520  1.00  0.00              
ATOM     94  CA  LEU    94      27.100  49.819  -1.392  1.00  0.00              
ATOM     95  CA  GLY    95      25.372  52.615   0.259  1.00  0.00              
ATOM     96  CA  VAL    96      25.331  52.136   3.955  1.00  0.00              
ATOM     97  CA  CYS    97      22.441  53.084   6.079  1.00  0.00              
ATOM     98  CA  SER    98      23.220  54.903   9.280  1.00  0.00              
ATOM     99  CA  ASN    99      22.680  51.970  11.589  1.00  0.00              
ATOM    100  CA  MET   100      25.023  49.752   9.651  1.00  0.00              
ATOM    101  CA  ARG   101      27.730  52.331   9.480  1.00  0.00              
ATOM    102  CA  ALA   102      27.540  52.927  13.178  1.00  0.00              
ATOM    103  CA  ASP   103      27.729  49.210  14.004  1.00  0.00              
ATOM    104  CA  LEU   104      30.753  48.672  11.759  1.00  0.00              
ATOM    105  CA  GLU   105      32.538  51.619  13.270  1.00  0.00              
ATOM    106  CA  ALA   106      31.915  50.290  16.739  1.00  0.00              
ATOM    107  CA  ILE   107      33.165  46.804  16.147  1.00  0.00              
ATOM    108  CA  LEU   108      36.163  47.731  13.987  1.00  0.00              
ATOM    109  CA  PRO   109      37.053  50.744  16.037  1.00  0.00              
ATOM    110  CA  GLU   110      37.526  49.166  19.472  1.00  0.00              
ATOM    111  CA  ARG   111      40.067  46.641  18.368  1.00  0.00              
ATOM    112  CA  PHE   112      41.633  48.653  15.717  1.00  0.00              
ATOM    113  CA  ILE   113      44.829  48.555  13.885  1.00  0.00              
ATOM    114  CA  PHE   114      45.984  51.691  12.191  1.00  0.00              
ATOM    115  CA  THR   115      48.306  51.498   9.187  1.00  0.00              
ATOM    116  CA  GLU   116      48.914  54.662   7.229  1.00  0.00              
ATOM    117  CA  ASP   117      49.857  54.609   3.627  1.00  0.00              
ATOM    290  CA  LYS   290      23.065  51.931  62.171  1.00  0.00              
ATOM    291  CA  TYR   291      26.543  53.150  61.318  1.00  0.00              
ATOM    292  CA  MET   292      27.028  54.051  57.674  1.00  0.00              
ATOM    293  CA  ALA   293      29.927  56.342  56.711  1.00  0.00              
ATOM    294  CA  CYS   294      31.615  56.047  53.364  1.00  0.00              
ATOM    295  CA  LEU   295      34.573  58.254  52.539  1.00  0.00              
ATOM    296  CA  LYS   296      34.841  57.529  48.847  1.00  0.00              
ATOM    297  CA  ASP   297      38.446  56.617  48.071  1.00  0.00              
ATOM    298  CA  HIS   298      38.702  54.512  51.231  1.00  0.00              
TER                                                                             
END
