
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS599_2-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS599_2-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51        30 - 80          4.96    12.12
  LONGEST_CONTINUOUS_SEGMENT:    51        31 - 81          4.93    11.99
  LCS_AVERAGE:     31.68

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        40 - 67          1.98    13.40
  LCS_AVERAGE:     15.65

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        72 - 92          0.84    17.90
  LCS_AVERAGE:      8.27

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      3    6   34     0    3    3    4    5    8    8    9   11   11   12   12   13   16   18   33   37   43   46   50 
LCS_GDT     I       2     I       2      4    6   34     3    4    4    5    5    8    8    9   11   11   20   23   29   37   41   46   49   56   63   64 
LCS_GDT     P       3     P       3      4    6   34     3    4    4    7    8   11   13   16   19   25   32   38   40   44   52   55   60   65   71   77 
LCS_GDT     F       4     F       4      4    6   34     3    4    4    5   11   16   25   31   37   42   43   49   53   60   65   69   71   74   78   81 
LCS_GDT     K       5     K       5      4    6   34     3    4    5   16   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     D       6     D       6      4    6   34     3    4    5    5   10   13   29   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     I       7     I       7      4    5   34     3    4    4    6   11   15   18   20   32   38   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     T       8     T       8      4    5   34     3    4    4    6   10   12   20   36   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     L       9     L       9      4    5   34     3    4    4    5   10   12   29   36   42   47   50   52   52   56   63   69   71   74   78   81 
LCS_GDT     A      10     A      10      4   15   34     3    3    4    7   10   15   26   38   43   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     D      11     D      11     12   19   34     6    9   13   16   17   18   18   20   22   26   30   34   39   47   59   66   71   74   78   81 
LCS_GDT     R      12     R      12     12   19   34     6    9   13   16   17   18   18   20   23   32   37   48   53   60   65   69   71   74   78   81 
LCS_GDT     D      13     D      13     12   19   34     6    9   13   16   17   18   18   21   28   32   37   48   53   60   65   69   71   74   78   81 
LCS_GDT     T      14     T      14     12   19   34     6    9   13   16   17   18   18   21   28   32   37   48   53   60   65   69   71   74   78   81 
LCS_GDT     I      15     I      15     12   19   34     6    9   13   16   17   20   22   23   29   32   37   45   53   60   65   69   71   74   78   81 
LCS_GDT     T      16     T      16     12   19   34     6    9   13   16   17   20   22   23   29   32   37   44   53   60   65   69   71   74   78   81 
LCS_GDT     A      17     A      17     12   19   34     4    9   13   16   17   18   22   23   29   32   37   43   53   60   65   69   71   74   78   81 
LCS_GDT     F      18     F      18     12   19   34     5    9   13   16   17   20   22   23   29   32   37   44   53   60   65   69   71   74   78   81 
LCS_GDT     T      19     T      19     12   19   34     5    9   13   16   17   18   18   22   29   30   35   44   53   60   65   69   71   74   78   81 
LCS_GDT     M      20     M      20     12   19   34     5    9   13   16   17   18   18   20   23   29   40   44   53   60   65   69   71   74   78   81 
LCS_GDT     K      21     K      21     12   19   34     5    9   12   16   17   18   18   30   34   37   40   43   46   55   65   69   71   74   78   81 
LCS_GDT     S      22     S      22     12   19   34     5    9   13   16   17   18   18   20   29   34   37   42   44   47   58   65   71   74   78   81 
LCS_GDT     D      23     D      23      6   19   34     3    6    8   16   17   18   18   20   23   26   30   34   39   47   54   60   68   74   78   81 
LCS_GDT     R      24     R      24      6   19   34     3    6   13   16   17   18   18   20   23   26   31   35   39   47   54   60   68   74   78   81 
LCS_GDT     R      25     R      25      6   19   34     3    6    8   15   17   18   18   20   23   26   31   35   39   47   54   60   68   74   78   81 
LCS_GDT     N      26     N      26      6   19   34     3    6    6    8   10   16   18   20   22   26   30   35   39   46   50   55   64   74   78   81 
LCS_GDT     C      27     C      27      4   19   34     3    6   13   16   17   18   18   20   24   26   33   37   41   47   54   60   68   74   78   81 
LCS_GDT     D      28     D      28      4   19   37     3    4   11   16   17   18   18   20   23   26   31   35   39   47   50   55   61   72   77   81 
LCS_GDT     L      29     L      29      6   19   49     3    5    6    7    9   12   15   20   22   26   30   33   36   44   46   49   56   63   68   79 
LCS_GDT     S      30     S      30      6   11   51     5    5    6    8   10   12   14   20   22   26   30   35   39   46   49   55   64   74   78   81 
LCS_GDT     F      31     F      31      6   11   51     5    5    8   11   16   18   18   20   29   33   39   45   51   58   64   69   71   74   78   81 
LCS_GDT     S      32     S      32      6    7   51     5    5    6    8   11   15   17   19   25   28   33   39   47   50   55   60   68   74   78   81 
LCS_GDT     N      33     N      33      6    7   51     5    5    6    8   10   12   17   19   22   26   30   33   44   50   52   54   62   74   78   81 
LCS_GDT     L      34     L      34      6    7   51     5    5    6    8   12   16   18   25   33   42   46   48   53   60   65   69   71   74   78   81 
LCS_GDT     C      35     C      35      3    3   51     3    4   11   18   24   27   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     S      36     S      36      3    5   51     1    4    4    5   11   27   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     W      37     W      37      3   23   51     3    5   13   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     R      38     R      38      3   25   51     3    4    4    8   14   22   31   34   38   42   46   49   52   57   61   67   71   72   74   78 
LCS_GDT     F      39     F      39      3   26   51     3    3    4    7   18   22   25   34   37   41   45   48   52   55   60   65   71   72   73   75 
LCS_GDT     L      40     L      40      9   28   51     3    9   17   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     Y      41     Y      41      9   28   51     3   10   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     D      42     D      42      9   28   51     8   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     T      43     T      43      9   28   51     8   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     Q      44     Q      44     10   28   51     8   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     F      45     F      45     10   28   51     8   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     A      46     A      46     10   28   51     4   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     V      47     V      47     10   28   51     3   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     I      48     I      48     10   28   51     4   11   18   20   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     D      49     D      49     10   28   51     3    5   12   18   23   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     D      50     D      50     10   28   51     8   15   19   22   27   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     F      51     F      51     10   28   51     4   15   20   22   25   29   34   39   45   47   50   52   52   59   65   69   71   74   78   81 
LCS_GDT     L      52     L      52     10   28   51     4   10   18   21   24   29   33   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     V      53     V      53     10   28   51     4   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     F      54     F      54     10   28   51     8   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     K      55     K      55     10   28   51     8   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     F      56     F      56     10   28   51     6   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     W      57     W      57     10   28   51     4    9   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     A      58     A      58     10   28   51     4    9   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     G      59     G      59     10   28   51     8   11   18   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     E      60     E      60      7   28   51     4    6   17   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     Q      61     Q      61      7   28   51     4    6    7   11   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     L      62     L      62      7   28   51     4    6   11   18   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     A      63     A      63      7   28   51     4    6   13   20   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     Y      64     Y      64      7   28   51     4    8   17   21   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     M      65     M      65      7   28   51     4    6    7    8   13   29   32   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     M      66     M      66      7   28   51     3    5    7   14   24   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     P      67     P      67      6   28   51     3    5   16   22   25   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     V      68     V      68      6   27   51     3    5    9   17   25   29   32   39   45   47   50   52   52   59   64   69   71   72   78   81 
LCS_GDT     G      69     G      69      6   27   51     3    5   14   22   27   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     N      70     N      70      6   27   51     3    5   10   20   27   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     G      71     G      71     20   27   51     3    4    8   20   27   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     D      72     D      72     21   27   51    14   19   20   22   27   29   34   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     L      73     L      73     21   27   51    14   19   20   22   27   29   32   39   45   47   50   52   53   60   65   69   71   73   78   81 
LCS_GDT     K      74     K      74     21   27   51    14   19   20   22   27   29   32   34   36   47   50   52   52   60   65   69   71   72   77   81 
LCS_GDT     A      75     A      75     21   27   51    14   19   20   22   27   29   32   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     V      76     V      76     21   27   51    14   19   20   22   27   29   32   39   45   47   50   52   53   60   65   69   71   74   78   81 
LCS_GDT     L      77     L      77     21   27   51    14   19   20   22   27   29   32   34   36   38   47   52   52   55   63   69   71   72   77   81 
LCS_GDT     R      78     R      78     21   27   51    14   19   20   22   27   29   32   34   36   38   47   52   52   59   65   69   71   72   77   81 
LCS_GDT     K      79     K      79     21   27   51    14   19   20   22   27   29   32   34   36   45   50   52   52   59   65   69   71   74   78   81 
LCS_GDT     L      80     L      80     21   27   51    14   19   20   22   27   29   32   34   36   37   40   43   47   53   54   61   67   72   74   80 
LCS_GDT     I      81     I      81     21   27   51    14   19   20   22   27   29   32   34   36   37   40   43   45   48   49   58   64   72   74   78 
LCS_GDT     E      82     E      82     21   27   50    14   19   20   22   27   29   32   34   36   37   40   43   45   51   58   64   71   72   76   80 
LCS_GDT     D      83     D      83     21   27   50    14   19   20   22   27   29   32   34   36   37   40   43   45   48   54   58   62   68   74   78 
LCS_GDT     A      84     A      84     21   27   50    13   19   20   22   27   29   32   34   36   37   40   43   45   48   49   52   55   58   67   73 
LCS_GDT     D      85     D      85     21   27   40    14   19   20   22   27   29   32   34   36   37   40   43   45   48   49   52   55   62   71   78 
LCS_GDT     K      86     K      86     21   27   40    14   19   20   22   27   29   32   34   36   37   40   43   45   48   49   52   55   63   70   78 
LCS_GDT     E      87     E      87     21   27   40    10   19   20   22   27   29   32   34   36   37   40   43   45   48   49   52   55   57   62   70 
LCS_GDT     K      88     K      88     21   27   40    13   19   20   22   27   29   32   34   36   37   40   43   45   48   49   52   55   57   62   66 
LCS_GDT     H      89     H      89     21   27   40    12   19   20   22   27   29   32   34   36   37   40   43   45   48   49   52   55   57   62   67 
LCS_GDT     N      90     N      90     21   27   40    12   19   20   22   27   29   32   34   36   37   40   43   45   48   49   52   55   57   63   67 
LCS_GDT     F      91     F      91     21   27   40     4    6   18   21   27   29   32   34   36   37   40   43   45   48   49   52   55   57   65   73 
LCS_GDT     C      92     C      92     21   27   40     4   15   18   22   27   29   32   34   36   37   40   43   45   48   49   51   55   57   62   64 
LCS_GDT     M      93     M      93      6   27   40     4    9   14   22   27   29   32   34   36   37   40   43   45   48   49   51   55   57   62   67 
LCS_GDT     L      94     L      94      6   27   40     4    9   14   15   16   18   26   32   36   37   38   39   42   44   48   50   52   55   55   60 
LCS_GDT     G      95     G      95      6   23   40     4    6    9   14   16   16   23   29   35   37   37   39   42   44   48   50   52   55   55   60 
LCS_GDT     V      96     V      96     14   20   40     6   13   14   21   25   29   32   34   36   37   40   43   45   48   49   52   59   67   72   74 
LCS_GDT     C      97     C      97     14   20   40    10   13   14   16   22   26   31   34   36   37   39   43   45   48   49   51   59   63   67   74 
LCS_GDT     S      98     S      98     14   17   40    10   13   14   15   16   16   16   18   23   32   36   43   44   48   55   58   61   69   72   75 
LCS_GDT     N      99     N      99     14   17   40    10   13   14   21   24   27   32   39   45   47   50   52   53   59   65   69   71   72   76   80 
LCS_GDT     M     100     M     100     14   17   40    10   13   14   15   16   16   29   39   45   47   50   52   53   60   65   69   71   72   78   81 
LCS_GDT     R     101     R     101     14   17   40    10   13   14   15   16   27   32   39   45   47   50   52   53   60   65   69   71   73   78   81 
LCS_GDT     A     102     A     102     14   17   40    10   13   14   15   16   16   22   29   33   38   43   48   52   60   65   69   71   74   78   81 
LCS_GDT     D     103     D     103     14   17   40    10   13   14   15   16   20   23   27   31   33   38   44   53   60   65   69   71   74   78   81 
LCS_GDT     L     104     L     104     14   17   26    10   13   14   15   16   20   23   27   31   34   46   48   53   60   65   69   71   74   78   81 
LCS_GDT     E     105     E     105     14   17   26    10   13   14   15   16   16   16   18   18   20   23   28   33   44   53   65   68   74   78   81 
LCS_GDT     A     106     A     106     14   17   26    10   13   14   15   16   16   16   18   18   20   21   23   25   28   32   35   56   65   76   79 
LCS_GDT     I     107     I     107     14   17   26    10   13   14   15   16   16   16   18   18   25   33   37   41   47   52   56   62   65   76   79 
LCS_GDT     L     108     L     108     14   17   26     9   13   14   15   16   16   16   18   18   21   26   33   39   47   54   56   62   72   76   79 
LCS_GDT     P     109     P     109     14   17   26     3    6   10   15   16   16   16   18   18   20   21   23   23   24   24   25   33   36   38   42 
LCS_GDT     E     110     E     110      8    9   25     4    8    9   10   11   13   14   16   17   19   20   21   23   23   24   24   26   36   38   42 
LCS_GDT     R     111     R     111      8    9   25     5    8    9   10   11   13   14   15   17   19   20   25   30   40   47   49   59   63   64   67 
LCS_GDT     F     112     F     112      8    9   25     5    8    9   10   11   13   14   15   23   28   33   39   42   47   54   57   68   74   78   81 
LCS_GDT     I     113     I     113      8    9   25     5    8    9   10   11   13   14   15   17   20   22   33   38   47   54   65   68   74   78   81 
LCS_GDT     F     114     F     114      8    9   25     5    8    9   10   11   13   14   17   21   23   31   39   51   60   65   69   71   74   78   81 
LCS_GDT     T     115     T     115      8    9   25     5    8    9   10   11   13   16   18   21   23   25   28   31   38   53   58   62   71   77   81 
LCS_GDT     E     116     E     116      8    9   25     4    8    9   10   11   13   14   15   18   20   21   24   27   32   34   38   40   47   50   53 
LCS_GDT     D     117     D     117      8    9   25     4    8    9   10   11   13   14   15   17   18   18   19   23   23   31   33   38   38   44   49 
LCS_GDT     K     290     K     290      3    9   19     3    3    6    9   10   10   10   10   11   11   12   13   15   16   16   18   18   19   25   28 
LCS_GDT     Y     291     Y     291      5    9   11     5    5    6    9   10   10   10   10   11   11   12   18   19   20   20   20   24   33   35   38 
LCS_GDT     M     292     M     292      5    9   11     5    5    7    9   10   10   10   10   11   11   12   18   19   20   20   23   25   36   51   55 
LCS_GDT     A     293     A     293      5    9   11     5    5    7    9   10   10   10   10   11   11   12   21   38   41   46   47   52   53   57   60 
LCS_GDT     C     294     C     294      5    9   11     5    5    7   13   27   28   31   34   36   37   39   42   44   48   49   51   53   57   60   63 
LCS_GDT     L     295     L     295      5    9   11     5    5    7    9   10   10   22   33   36   37   40   43   45   48   49   52   55   57   63   67 
LCS_GDT     K     296     K     296      5    9   11     3   10   16   22   25   29   32   34   36   37   40   43   45   48   49   52   55   57   63   67 
LCS_GDT     D     297     D     297      3    9   11     3    4    7    9   10   10   10   10   21   30   35   37   43   47   48   51   52   55   56   60 
LCS_GDT     H     298     H     298      3    9   11     3    4    7    9   10   10   10   10   11   11   13   14   24   32   42   46   49   51   54   56 
LCS_AVERAGE  LCS_A:  18.53  (   8.27   15.65   31.68 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     19     20     22     27     29     34     39     45     47     50     52     53     60     65     69     71     74     78     81 
GDT PERCENT_CA  11.11  15.08  15.87  17.46  21.43  23.02  26.98  30.95  35.71  37.30  39.68  41.27  42.06  47.62  51.59  54.76  56.35  58.73  61.90  64.29
GDT RMS_LOCAL    0.24   0.49   0.62   1.03   1.46   1.73   2.41   2.79   3.11   3.23   3.54   3.78   4.70   4.91   5.17   5.36   5.41   6.38   6.49   6.62
GDT RMS_ALL_CA  19.10  17.49  16.93  18.12  18.09  17.02  12.40  12.40  12.19  12.26  12.16  12.07  11.79  11.83  11.73  11.70  11.79  12.24  12.08  11.90

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         21.809
LGA    I       2      I       2         16.054
LGA    P       3      P       3         11.407
LGA    F       4      F       4          7.551
LGA    K       5      K       5          2.444
LGA    D       6      D       6          4.800
LGA    I       7      I       7          7.309
LGA    T       8      T       8          5.803
LGA    L       9      L       9          6.548
LGA    A      10      A      10          4.984
LGA    D      11      D      11          9.486
LGA    R      12      R      12          8.211
LGA    D      13      D      13          9.248
LGA    T      14      T      14          9.149
LGA    I      15      I      15          8.764
LGA    T      16      T      16          9.658
LGA    A      17      A      17         10.201
LGA    F      18      F      18          9.643
LGA    T      19      T      19         10.709
LGA    M      20      M      20         10.754
LGA    K      21      K      21         11.556
LGA    S      22      S      22         12.559
LGA    D      23      D      23         15.941
LGA    R      24      R      24         15.783
LGA    R      25      R      25         17.439
LGA    N      26      N      26         17.766
LGA    C      27      C      27         17.548
LGA    D      28      D      28         17.517
LGA    L      29      L      29         17.451
LGA    S      30      S      30         16.476
LGA    F      31      F      31         10.810
LGA    S      32      S      32         13.240
LGA    N      33      N      33         15.006
LGA    L      34      L      34          9.068
LGA    C      35      C      35          4.518
LGA    S      36      S      36          3.562
LGA    W      37      W      37          3.231
LGA    R      38      R      38          5.806
LGA    F      39      F      39          6.226
LGA    L      40      L      40          3.285
LGA    Y      41      Y      41          3.281
LGA    D      42      D      42          2.376
LGA    T      43      T      43          1.795
LGA    Q      44      Q      44          1.756
LGA    F      45      F      45          2.046
LGA    A      46      A      46          2.524
LGA    V      47      V      47          2.480
LGA    I      48      I      48          1.830
LGA    D      49      D      49          2.655
LGA    D      50      D      50          2.855
LGA    F      51      F      51          3.832
LGA    L      52      L      52          3.708
LGA    V      53      V      53          3.076
LGA    F      54      F      54          1.849
LGA    K      55      K      55          2.328
LGA    F      56      F      56          2.223
LGA    W      57      W      57          3.258
LGA    A      58      A      58          3.911
LGA    G      59      G      59          2.769
LGA    E      60      E      60          2.040
LGA    Q      61      Q      61          3.974
LGA    L      62      L      62          3.473
LGA    A      63      A      63          1.568
LGA    Y      64      Y      64          1.468
LGA    M      65      M      65          3.844
LGA    M      66      M      66          2.429
LGA    P      67      P      67          2.869
LGA    V      68      V      68          4.000
LGA    G      69      G      69          2.312
LGA    N      70      N      70          2.151
LGA    G      71      G      71          2.725
LGA    D      72      D      72          2.891
LGA    L      73      L      73          3.454
LGA    K      74      K      74          6.104
LGA    A      75      A      75          3.807
LGA    V      76      V      76          3.959
LGA    L      77      L      77          7.374
LGA    R      78      R      78          7.893
LGA    K      79      K      79          7.045
LGA    L      80      L      80          9.784
LGA    I      81      I      81         11.907
LGA    E      82      E      82         11.284
LGA    D      83      D      83         12.277
LGA    A      84      A      84         14.834
LGA    D      85      D      85         15.785
LGA    K      86      K      86         15.978
LGA    E      87      E      87         17.866
LGA    K      88      K      88         19.408
LGA    H      89      H      89         18.491
LGA    N      90      N      90         17.669
LGA    F      91      F      91         14.525
LGA    C      92      C      92         16.962
LGA    M      93      M      93         14.453
LGA    L      94      L      94         17.268
LGA    G      95      G      95         14.951
LGA    V      96      V      96         10.503
LGA    C      97      C      97         10.623
LGA    S      98      S      98         10.067
LGA    N      99      N      99          5.139
LGA    M     100      M     100          4.333
LGA    R     101      R     101          5.859
LGA    A     102      A     102         10.501
LGA    D     103      D     103         11.141
LGA    L     104      L     104         10.324
LGA    E     105      E     105         14.150
LGA    A     106      A     106         19.289
LGA    I     107      I     107         20.403
LGA    L     108      L     108         18.302
LGA    P     109      P     109         22.008
LGA    E     110      E     110         24.256
LGA    R     111      R     111         21.724
LGA    F     112      F     112         15.112
LGA    I     113      I     113         13.137
LGA    F     114      F     114          9.863
LGA    T     115      T     115         12.150
LGA    E     116      E     116         16.360
LGA    D     117      D     117         21.305
LGA    K     290      K     290         28.516
LGA    Y     291      Y     291         21.514
LGA    M     292      M     292         19.536
LGA    A     293      A     293         15.871
LGA    C     294      C     294         17.661
LGA    L     295      L     295         16.887
LGA    K     296      K     296         18.918
LGA    D     297      D     297         24.149
LGA    H     298      H     298         22.618

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     39    2.79    29.563    26.041     1.350

LGA_LOCAL      RMSD =  2.789  Number of atoms =   39  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 12.155  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 11.008  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.014647 * X  +  -0.914400 * Y  +  -0.404547 * Z  +  32.867313
  Y_new =  -0.236537 * X  +  -0.389938 * Y  +   0.889943 * Z  +  43.432625
  Z_new =  -0.971512 * X  +   0.108726 * Y  +  -0.210578 * Z  +  -9.199111 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.664976   -0.476617  [ DEG:   152.6918    -27.3081 ]
  Theta =   1.331529    1.810063  [ DEG:    76.2910    103.7090 ]
  Phi   =  -1.632640    1.508953  [ DEG:   -93.5434     86.4566 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS599_2-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS599_2-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   39   2.79  26.041    11.01
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS599_2-D1
PFRMAT TS                                                                       
TARGET T0372                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      42.856  60.875  11.337  1.00  0.00              
ATOM      2  CA  ILE     2      43.438  57.199   9.470  1.00  0.00              
ATOM      3  CA  PRO     3      43.583  56.335   5.862  1.00  0.00              
ATOM      4  CA  PHE     4      46.785  55.266   4.745  1.00  0.00              
ATOM      5  CA  LYS     5      48.542  54.120   1.619  1.00  0.00              
ATOM      6  CA  ASP     6      51.788  53.374   3.512  1.00  0.00              
ATOM      7  CA  ILE     7      52.010  56.338   5.906  1.00  0.00              
ATOM      8  CA  THR     8      53.220  55.257   9.310  1.00  0.00              
ATOM      9  CA  LEU     9      52.439  57.248  12.433  1.00  0.00              
ATOM     10  CA  ALA    10      54.824  56.340  15.216  1.00  0.00              
ATOM     11  CA  ASP    11      52.956  57.275  18.361  1.00  0.00              
ATOM     12  CA  ARG    12      52.096  53.842  19.830  1.00  0.00              
ATOM     13  CA  ASP    13      48.942  55.030  21.339  1.00  0.00              
ATOM     14  CA  THR    14      47.760  56.591  18.141  1.00  0.00              
ATOM     15  CA  ILE    15      48.552  53.481  16.149  1.00  0.00              
ATOM     16  CA  THR    16      46.690  51.287  18.622  1.00  0.00              
ATOM     17  CA  ALA    17      43.662  53.660  18.366  1.00  0.00              
ATOM     18  CA  PHE    18      43.734  53.491  14.574  1.00  0.00              
ATOM     19  CA  THR    19      43.882  49.720  14.613  1.00  0.00              
ATOM     20  CA  MET    20      40.971  49.530  17.121  1.00  0.00              
ATOM     21  CA  LYS    21      38.661  51.568  14.971  1.00  0.00              
ATOM     22  CA  SER    22      39.201  49.556  11.877  1.00  0.00              
ATOM     23  CA  ASP    23      38.973  46.118  13.463  1.00  0.00              
ATOM     24  CA  ARG    24      42.366  44.921  12.322  1.00  0.00              
ATOM     25  CA  ARG    25      44.700  42.753  14.353  1.00  0.00              
ATOM     26  CA  ASN    26      48.182  43.963  13.624  1.00  0.00              
ATOM     27  CA  CYS    27      50.457  41.027  13.311  1.00  0.00              
ATOM     28  CA  ASP    28      52.568  41.990  10.355  1.00  0.00              
ATOM     29  CA  LEU    29      53.619  45.438  10.945  1.00  0.00              
ATOM     30  CA  SER    30      55.402  47.555  13.383  1.00  0.00              
ATOM     31  CA  PHE    31      53.603  50.714  14.281  1.00  0.00              
ATOM     32  CA  SER    32      55.583  52.866  11.896  1.00  0.00              
ATOM     33  CA  ASN    33      54.803  50.721   8.891  1.00  0.00              
ATOM     34  CA  LEU    34      51.216  49.757   9.393  1.00  0.00              
ATOM     35  CA  CYS    35      50.227  46.241   8.591  1.00  0.00              
ATOM     36  CA  SER    36      46.831  44.752   9.209  1.00  0.00              
ATOM     37  CA  TRP    37      46.459  40.918   9.243  1.00  0.00              
ATOM     38  CA  ARG    38      43.130  39.318   9.967  1.00  0.00              
ATOM     39  CA  PHE    39      43.046  35.795   8.682  1.00  0.00              
ATOM     40  CA  LEU    40      45.733  36.132   6.062  1.00  0.00              
ATOM     41  CA  TYR    41      43.963  38.704   3.960  1.00  0.00              
ATOM     42  CA  ASP    42      46.119  41.667   3.284  1.00  0.00              
ATOM     43  CA  THR    43      44.618  44.975   4.022  1.00  0.00              
ATOM     44  CA  GLN    44      45.396  47.982   1.910  1.00  0.00              
ATOM     45  CA  PHE    45      44.190  51.317   2.745  1.00  0.00              
ATOM     46  CA  ALA    46      44.231  54.142   0.181  1.00  0.00              
ATOM     47  CA  VAL    47      43.319  57.672   1.043  1.00  0.00              
ATOM     48  CA  ILE    48      42.673  60.079  -1.789  1.00  0.00              
ATOM     49  CA  ASP    49      41.630  63.680  -1.110  1.00  0.00              
ATOM     50  CA  ASP    50      38.191  62.978   0.277  1.00  0.00              
ATOM     51  CA  PHE    51      37.723  59.495  -0.910  1.00  0.00              
ATOM     52  CA  LEU    52      38.547  56.317   1.062  1.00  0.00              
ATOM     53  CA  VAL    53      39.516  53.308  -0.636  1.00  0.00              
ATOM     54  CA  PHE    54      39.884  50.043   1.348  1.00  0.00              
ATOM     55  CA  LYS    55      41.409  46.948  -0.226  1.00  0.00              
ATOM     56  CA  PHE    56      41.005  43.662   1.506  1.00  0.00              
ATOM     57  CA  TRP    57      42.763  40.559   0.316  1.00  0.00              
ATOM     58  CA  ALA    58      41.118  37.236   1.132  1.00  0.00              
ATOM     59  CA  GLY    59      41.301  34.634  -1.572  1.00  0.00              
ATOM     60  CA  GLU    60      39.009  36.398  -3.964  1.00  0.00              
ATOM     61  CA  GLN    61      39.852  40.010  -3.477  1.00  0.00              
ATOM     62  CA  LEU    62      37.482  42.281  -1.641  1.00  0.00              
ATOM     63  CA  ALA    63      37.397  45.974  -2.466  1.00  0.00              
ATOM     64  CA  TYR    64      35.692  48.392  -0.238  1.00  0.00              
ATOM     65  CA  MET    65      34.851  51.859  -1.498  1.00  0.00              
ATOM     66  CA  MET    66      34.097  54.529   0.937  1.00  0.00              
ATOM     67  CA  PRO    67      32.917  58.018   0.081  1.00  0.00              
ATOM     68  CA  VAL    68      34.811  60.543   2.165  1.00  0.00              
ATOM     69  CA  GLY    69      33.054  62.863   4.529  1.00  0.00              
ATOM     70  CA  ASN    70      30.990  65.853   4.370  1.00  0.00              
ATOM     71  CA  GLY    71      32.997  68.606   2.848  1.00  0.00              
ATOM     72  CA  ASP    72      33.726  66.753  -0.301  1.00  0.00              
ATOM     73  CA  LEU    73      30.354  65.661  -1.385  1.00  0.00              
ATOM     74  CA  LYS    74      29.952  67.996  -4.401  1.00  0.00              
ATOM     75  CA  ALA    75      33.215  66.841  -5.997  1.00  0.00              
ATOM     76  CA  VAL    76      32.262  63.215  -5.635  1.00  0.00              
ATOM     77  CA  LEU    77      28.808  63.790  -7.110  1.00  0.00              
ATOM     78  CA  ARG    78      30.192  65.673 -10.093  1.00  0.00              
ATOM     79  CA  LYS    79      32.565  62.880 -10.868  1.00  0.00              
ATOM     80  CA  LEU    80      29.627  60.381 -10.653  1.00  0.00              
ATOM     81  CA  ILE    81      27.577  62.565 -13.025  1.00  0.00              
ATOM     82  CA  GLU    82      30.485  62.641 -15.467  1.00  0.00              
ATOM     83  CA  ASP    83      30.859  58.822 -15.391  1.00  0.00              
ATOM     84  CA  ALA    84      27.198  58.243 -15.921  1.00  0.00              
ATOM     85  CA  ASP    85      27.187  60.695 -18.800  1.00  0.00              
ATOM     86  CA  LYS    86      30.103  58.980 -20.475  1.00  0.00              
ATOM     87  CA  GLU    87      28.420  55.548 -20.425  1.00  0.00              
ATOM     88  CA  LYS    88      24.947  56.878 -21.377  1.00  0.00              
ATOM     89  CA  HIS    89      23.168  55.855 -18.246  1.00  0.00              
ATOM     90  CA  ASN    90      20.951  58.031 -16.111  1.00  0.00              
ATOM     91  CA  PHE    91      21.908  57.362 -12.552  1.00  0.00              
ATOM     92  CA  CYS    92      20.816  59.632  -9.835  1.00  0.00              
ATOM     93  CA  MET    93      22.903  59.492  -6.640  1.00  0.00              
ATOM     94  CA  LEU    94      21.430  60.644  -3.354  1.00  0.00              
ATOM     95  CA  GLY    95      23.597  60.879  -0.356  1.00  0.00              
ATOM     96  CA  VAL    96      22.105  59.952   2.955  1.00  0.00              
ATOM     97  CA  CYS    97      22.763  61.785   6.146  1.00  0.00              
ATOM     98  CA  SER    98      25.811  61.354   8.322  1.00  0.00              
ATOM     99  CA  ASN    99      24.267  59.143  10.921  1.00  0.00              
ATOM    100  CA  MET   100      23.019  56.819   8.418  1.00  0.00              
ATOM    101  CA  ARG   101      26.202  56.576   6.457  1.00  0.00              
ATOM    102  CA  ALA   102      28.231  55.782   9.510  1.00  0.00              
ATOM    103  CA  ASP   103      25.904  52.992  10.489  1.00  0.00              
ATOM    104  CA  LEU   104      25.936  51.430   7.040  1.00  0.00              
ATOM    105  CA  GLU   105      29.698  51.557   6.763  1.00  0.00              
ATOM    106  CA  ALA   106      30.028  49.770  10.117  1.00  0.00              
ATOM    107  CA  ILE   107      27.627  47.008   9.088  1.00  0.00              
ATOM    108  CA  LEU   108      29.008  46.471   5.622  1.00  0.00              
ATOM    109  CA  PRO   109      32.574  46.200   6.841  1.00  0.00              
ATOM    110  CA  GLU   110      32.162  43.310   9.196  1.00  0.00              
ATOM    111  CA  ARG   111      30.050  41.042   7.080  1.00  0.00              
ATOM    112  CA  PHE   112      30.539  42.129   3.642  1.00  0.00              
ATOM    113  CA  ILE   113      32.774  43.001   0.877  1.00  0.00              
ATOM    114  CA  PHE   114      31.957  45.907  -1.382  1.00  0.00              
ATOM    115  CA  THR   115      33.415  46.205  -4.845  1.00  0.00              
ATOM    116  CA  GLU   116      33.978  49.656  -6.233  1.00  0.00              
ATOM    117  CA  ASP   117      34.032  50.337  -9.910  1.00  0.00              
ATOM    290  CA  LYS   290      18.067  50.362 -19.946  1.00  0.00              
ATOM    291  CA  TYR   291      17.707  50.877 -16.244  1.00  0.00              
ATOM    292  CA  MET   292      18.624  54.349 -15.009  1.00  0.00              
ATOM    293  CA  ALA   293      16.964  56.340 -12.306  1.00  0.00              
ATOM    294  CA  CYS   294      17.014  60.136 -12.188  1.00  0.00              
ATOM    295  CA  LEU   295      15.431  61.725  -9.172  1.00  0.00              
ATOM    296  CA  LYS   296      16.277  65.375  -9.674  1.00  0.00              
ATOM    297  CA  ASP   297      13.388  67.058  -7.877  1.00  0.00              
ATOM    298  CA  HIS   298      13.730  64.987  -4.791  1.00  0.00              
TER                                                                             
END
