
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS599_3-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS599_3-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        30 - 73          4.80    12.91
  LONGEST_CONTINUOUS_SEGMENT:    44        31 - 74          4.93    12.87
  LCS_AVERAGE:     28.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        41 - 66          1.98    13.36
  LCS_AVERAGE:     15.01

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        72 - 89          0.95    26.54
  LCS_AVERAGE:      8.02

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      5    7   35     3    4    8   13   17   22   26   31   39   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     I       2     I       2      5    7   35     3    5    8   13   17   22   26   31   39   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     P       3     P       3      5    8   35     3    5    5    9   17   22   26   37   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     F       4     F       4      5    8   35     3    5    7   13   17   22   26   31   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     K       5     K       5      5    8   35     4    5    7   11   16   22   30   37   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     D       6     D       6      5    8   35     4    5    8   13   17   22   30   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     I       7     I       7      5    8   35     4    4    7   13   19   28   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     T       8     T       8      5    8   35     4    4    7   13   19   28   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     L       9     L       9      5    8   35     3    4    7   14   19   28   34   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     A      10     A      10      4   19   35     3    3    8   13   17   22   24   29   35   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     D      11     D      11     12   21   35     7   10   15   18   18   20   21   22   24   27   30   33   42   50   58   63   67   71   73   76 
LCS_GDT     R      12     R      12     12   21   35     7   10   15   18   18   20   21   22   24   27   38   43   46   51   59   63   67   71   73   76 
LCS_GDT     D      13     D      13     12   21   35     7   10   15   18   18   20   22   24   27   35   37   41   47   51   56   58   63   67   73   76 
LCS_GDT     T      14     T      14     12   21   35     7   10   15   18   18   20   21   24   26   35   37   41   47   51   53   58   63   67   72   76 
LCS_GDT     I      15     I      15     12   21   35     7   10   15   18   18   20   22   25   27   35   37   41   47   51   53   61   63   67   73   76 
LCS_GDT     T      16     T      16     12   21   35     7   10   15   18   18   20   21   24   26   35   37   41   47   49   53   56   61   66   71   76 
LCS_GDT     A      17     A      17     12   21   35     7   10   15   18   18   20   21   23   26   29   33   41   47   49   53   56   59   61   67   74 
LCS_GDT     F      18     F      18     12   21   35     5   10   15   18   18   20   21   22   24   29   33   41   47   49   53   56   59   64   69   75 
LCS_GDT     T      19     T      19     12   21   35     5   10   15   18   18   20   21   22   24   27   30   31   41   49   53   56   59   61   64   71 
LCS_GDT     M      20     M      20     12   21   35     3   10   15   18   18   20   21   22   24   27   30   31   36   40   50   56   59   60   63   67 
LCS_GDT     K      21     K      21     12   21   35     3   10   15   18   18   20   21   22   24   27   30   31   31   34   42   47   51   54   59   62 
LCS_GDT     S      22     S      22     12   21   35     3   10   15   18   18   20   21   22   24   27   30   31   31   34   38   43   51   54   56   62 
LCS_GDT     D      23     D      23     12   21   35     3    5   14   18   18   20   21   22   24   27   30   31   31   34   38   42   51   53   56   62 
LCS_GDT     R      24     R      24      7   21   35     3    6   15   18   18   20   21   22   24   27   30   31   31   34   38   45   51   53   56   62 
LCS_GDT     R      25     R      25      6   21   35     3    9   15   18   18   20   21   22   24   27   30   31   34   36   41   45   51   53   56   62 
LCS_GDT     N      26     N      26      6   21   35     3    5    9   13   18   20   21   22   24   27   30   31   38   39   41   45   51   53   56   60 
LCS_GDT     C      27     C      27      4   21   35     3   10   14   18   18   20   21   22   24   27   30   31   38   39   41   45   51   53   56   62 
LCS_GDT     D      28     D      28      4   21   35     3    9   10   18   18   20   21   22   24   27   30   31   32   35   41   43   48   52   55   59 
LCS_GDT     L      29     L      29      6   21   43     4    6    6   11   15   20   21   22   24   27   30   31   32   39   41   46   49   53   56   62 
LCS_GDT     S      30     S      30      6   21   44     4    6    6    6    8   16   19   22   24   27   30   31   38   39   45   48   52   56   61   63 
LCS_GDT     F      31     F      31      6   21   44     4   10   15   18   18   20   21   22   24   28   34   38   41   44   50   56   59   63   69   74 
LCS_GDT     S      32     S      32      6    7   44     4    6    6    8   10   15   21   22   24   30   35   41   46   54   59   62   66   70   73   76 
LCS_GDT     N      33     N      33      6    7   44     4    6    6    6    8    9   14   18   22   31   33   38   45   47   53   58   64   69   73   75 
LCS_GDT     L      34     L      34      6    7   44     3    6    6    6    8    9   16   20   25   31   35   41   46   57   60   64   67   71   73   76 
LCS_GDT     C      35     C      35      3    3   44     3    3    4    8   15   24   27   31   38   45   49   52   57   60   63   65   67   71   73   76 
LCS_GDT     S      36     S      36      3    4   44     0    3   10   13   21   27   30   33   40   46   50   52   57   60   63   65   67   71   73   76 
LCS_GDT     W      37     W      37      3    4   44     3    3    6    9   19   23   27   31   36   39   42   48   57   58   61   65   67   71   73   76 
LCS_GDT     R      38     R      38      4    5   44     4    5    6    6    6   14   23   27   33   37   40   50   57   58   62   65   67   71   73   76 
LCS_GDT     F      39     F      39      4   18   44     4    5    6   11   14   20   27   31   36   41   49   52   57   60   63   65   67   71   73   76 
LCS_GDT     L      40     L      40      4   25   44     4    5    9   14   19   25   27   33   36   41   49   52   57   60   63   65   67   71   73   76 
LCS_GDT     Y      41     Y      41      8   26   44     4    5   14   18   24   30   33   36   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     D      42     D      42      8   26   44     5   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     T      43     T      43      8   26   44     5   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     Q      44     Q      44     10   26   44     5   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     F      45     F      45     10   26   44     5   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     A      46     A      46     10   26   44     4   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     V      47     V      47     10   26   44     3   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     I      48     I      48     10   26   44     4   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     D      49     D      49     10   26   44     4    8   14   19   24   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     D      50     D      50     10   26   44     4    9   16   19   25   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     F      51     F      51     10   26   44     4    9   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     L      52     L      52     10   26   44     3    9   16   19   25   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     V      53     V      53     10   26   44     4    9   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     F      54     F      54      9   26   44     4   10   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     K      55     K      55      9   26   44     5   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     F      56     F      56      9   26   44     5   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     W      57     W      57      9   26   44     3    9   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     A      58     A      58      9   26   44     3    5   13   18   24   30   33   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     G      59     G      59      9   26   44     3   12   16   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     E      60     E      60      6   26   44     4    8   11   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     Q      61     Q      61      6   26   44     4    6    9   18   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     L      62     L      62      6   26   44     4    6    9   16   24   28   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     A      63     A      63      6   26   44     4    7   14   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     Y      64     Y      64      6   26   44     3    8   15   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     M      65     M      65      6   26   44     3    6   10   17   20   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     M      66     M      66      6   26   44     4    5    9   17   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     P      67     P      67      5   15   44     4    4    7   10   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     V      68     V      68      5   15   44     4    4    5   15   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     G      69     G      69      5   20   44     4    6    7   13   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     N      70     N      70      4   24   44     3    7   11   18   24   25   30   33   41   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     G      71     G      71      4   24   44     3    7   14   18   20   24   28   31   34   37   42   50   57   58   61   64   67   71   73   76 
LCS_GDT     D      72     D      72     18   24   44    11   15   18   20   21   24   28   29   32   37   39   42   48   51   59   62   65   69   73   76 
LCS_GDT     L      73     L      73     18   24   44    11   15   18   20   21   24   28   29   32   37   39   43   48   57   60   63   67   71   73   76 
LCS_GDT     K      74     K      74     18   24   44    11   15   17   20   21   24   28   29   30   30   35   38   39   40   50   52   59   61   64   68 
LCS_GDT     A      75     A      75     18   24   42    11   15   18   20   21   24   28   29   30   30   35   38   39   49   53   56   59   60   63   67 
LCS_GDT     V      76     V      76     18   24   42    11   15   18   20   21   24   28   29   30   30   35   40   47   49   53   56   59   66   72   76 
LCS_GDT     L      77     L      77     18   24   42    11   15   18   20   21   24   28   29   30   30   35   40   47   49   53   56   59   66   71   76 
LCS_GDT     R      78     R      78     18   24   42    11   15   18   20   21   24   28   29   30   30   35   38   39   39   39   42   46   52   56   59 
LCS_GDT     K      79     K      79     18   24   42    11   15   18   20   21   24   28   29   30   30   35   38   39   40   42   45   51   53   56   60 
LCS_GDT     L      80     L      80     18   24   42    11   15   18   20   21   24   28   29   30   30   35   38   39   40   45   48   51   54   58   63 
LCS_GDT     I      81     I      81     18   24   42    11   15   18   20   21   24   28   29   30   30   35   38   39   39   39   45   48   52   56   60 
LCS_GDT     E      82     E      82     18   24   42    11   15   18   20   21   24   28   29   30   30   35   38   39   39   39   42   46   49   52   55 
LCS_GDT     D      83     D      83     18   24   42     8   15   18   20   21   24   28   29   30   30   35   38   39   39   41   45   48   50   52   55 
LCS_GDT     A      84     A      84     18   24   42     8   15   18   20   21   24   28   29   30   30   35   38   39   39   41   45   48   52   56   60 
LCS_GDT     D      85     D      85     18   24   42     8   15   18   20   21   24   28   29   30   30   35   38   39   39   39   42   44   48   49   51 
LCS_GDT     K      86     K      86     18   24   42     5   15   18   20   21   24   28   29   30   30   35   38   39   39   39   40   43   48   49   51 
LCS_GDT     E      87     E      87     18   24   42     5   15   18   20   21   24   28   29   30   30   35   38   39   39   39   42   44   49   49   52 
LCS_GDT     K      88     K      88     18   24   42     5   14   18   20   21   24   28   29   30   30   35   38   39   39   39   42   44   49   50   60 
LCS_GDT     H      89     H      89     18   24   42     5   11   18   20   21   23   25   29   30   30   34   38   39   42   45   49   55   62   65   71 
LCS_GDT     N      90     N      90     13   24   42     3    9   15   20   21   23   24   26   28   29   31   36   41   44   50   55   58   68   71   76 
LCS_GDT     F      91     F      91     10   24   42     4    5   13   18   21   23   23   26   28   33   35   41   45   52   57   62   64   70   73   76 
LCS_GDT     C      92     C      92     10   24   42     5   12   18   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     M      93     M      93      5   24   39     4   12   15   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     L      94     L      94     16   24   38     5   14   15   17   18   21   25   36   42   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     G      95     G      95     16   18   38     4   14   15   17   18   21   24   28   38   42   49   53   57   60   63   65   67   71   73   76 
LCS_GDT     V      96     V      96     16   18   38     4   14   15   17   18   21   30   35   42   44   49   53   57   60   63   65   67   71   73   76 
LCS_GDT     C      97     C      97     16   18   37     9   14   15   17   18   21   24   27   38   42   46   49   54   55   62   65   67   70   73   76 
LCS_GDT     S      98     S      98     16   18   33     9   14   15   17   18   22   30   35   38   42   49   53   57   60   63   65   67   71   73   76 
LCS_GDT     N      99     N      99     16   18   33     9   14   15   17   18   19   30   35   42   44   49   53   57   60   63   65   67   71   73   76 
LCS_GDT     M     100     M     100     16   18   33     9   14   15   17   18   19   21   25   37   40   49   53   57   59   63   65   67   71   73   76 
LCS_GDT     R     101     R     101     16   18   33     9   14   15   17   18   22   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     A     102     A     102     16   18   33     9   14   15   17   18   21   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     D     103     D     103     16   18   24     9   14   15   17   18   19   21   23   34   37   41   45   52   58   63   65   67   71   73   76 
LCS_GDT     L     104     L     104     16   18   24     9   14   15   17   18   19   21   27   35   37   41   50   52   60   63   65   67   71   73   76 
LCS_GDT     E     105     E     105     16   18   24     9   14   15   17   18   19   26   32   35   39   46   52   57   60   63   65   67   71   73   76 
LCS_GDT     A     106     A     106     16   18   24     9   14   15   17   18   19   21   23   28   35   39   45   47   51   59   64   67   70   73   76 
LCS_GDT     I     107     I     107     16   18   24     9   14   15   17   18   19   21   23   28   30   39   42   46   48   52   59   64   67   73   76 
LCS_GDT     L     108     L     108     16   18   24     4   14   15   17   18   19   21   23   28   30   39   42   46   48   52   59   64   68   73   76 
LCS_GDT     P     109     P     109     16   18   24     4    4   14   17   18   19   21   23   28   30   39   43   46   48   57   60   64   69   73   76 
LCS_GDT     E     110     E     110      8   12   24     3    4    9   10   10   11   12   16   19   20   21   28   34   41   48   59   64   68   73   76 
LCS_GDT     R     111     R     111      8   12   24     3    7    9   10   10   11   12   15   19   19   20   23   27   37   43   51   57   60   65   68 
LCS_GDT     F     112     F     112      8   12   24     5    7    9   10   10   11   12   12   13   15   18   20   22   27   38   45   57   59   65   68 
LCS_GDT     I     113     I     113      8   12   22     5    7    9   10   10   11   12   12   13   13   14   14   16   17   26   31   42   52   59   68 
LCS_GDT     F     114     F     114      8   12   20     5    7    9   10   10   11   12   12   13   13   14   14   15   16   17   22   24   36   44   57 
LCS_GDT     T     115     T     115      8   12   17     5    7    9   10   10   11   12   12   13   13   14   14   15   16   16   16   22   27   35   46 
LCS_GDT     E     116     E     116      8   12   17     5    7    9   10   10   11   12   12   13   13   14   14   15   16   16   16   17   19   27   34 
LCS_GDT     D     117     D     117      8   12   17     3    7    9   10   10   11   12   12   13   13   14   14   15   16   16   16   17   22   28   34 
LCS_GDT     K     290     K     290      7    9   17     5    7    7   13   18   22   26   31   37   46   50   52   57   60   63   65   67   71   73   76 
LCS_GDT     Y     291     Y     291      7    9    9     5    7   14   18   20   23   26   36   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     M     292     M     292      7    9    9     5    7   11   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     A     293     A     293      7    9    9     5    7   11   20   26   30   35   38   43   46   50   53   57   60   63   65   67   71   73   76 
LCS_GDT     C     294     C     294      7    9    9     5    7    7    7    9   12   16   22   29   38   43   52   57   60   63   65   67   71   73   76 
LCS_GDT     L     295     L     295      7    9    9     3    7    7    7    9   12   16   21   34   38   43   52   57   59   63   65   67   71   73   76 
LCS_GDT     K     296     K     296      7    9    9     3    7    7    7   10   14   22   25   29   36   39   42   47   54   61   64   67   71   73   76 
LCS_GDT     D     297     D     297      5    9    9     3    4    5    7    8    9   10   21   22   27   38   41   47   49   53   56   61   67   73   76 
LCS_GDT     H     298     H     298      5    9    9     3    4    5    7    7   15   18   28   34   38   41   42   48   57   61   64   67   70   73   76 
LCS_AVERAGE  LCS_A:  17.20  (   8.02   15.01   28.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     15     18     20     26     30     35     38     43     46     50     53     57     60     63     65     67     71     73     76 
GDT PERCENT_CA   8.73  11.90  14.29  15.87  20.63  23.81  27.78  30.16  34.13  36.51  39.68  42.06  45.24  47.62  50.00  51.59  53.17  56.35  57.94  60.32
GDT RMS_LOCAL    0.31   0.52   1.00   1.17   1.79   1.95   2.39   2.64   3.02   3.43   3.60   3.65   4.26   4.33   4.51   4.66   4.84   5.34   5.52   5.95
GDT RMS_ALL_CA  26.48  26.50  26.44  26.42  13.59  13.51  13.60  13.56  13.48  13.35  13.24  13.72  12.67  13.18  13.22  13.23  13.15  12.79  12.97  12.42

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.797
LGA    I       2      I       2          6.254
LGA    P       3      P       3          4.488
LGA    F       4      F       4          5.267
LGA    K       5      K       5          4.335
LGA    D       6      D       6          3.920
LGA    I       7      I       7          2.112
LGA    T       8      T       8          2.422
LGA    L       9      L       9          2.747
LGA    A      10      A      10          6.708
LGA    D      11      D      11         12.061
LGA    R      12      R      12         12.994
LGA    D      13      D      13         17.264
LGA    T      14      T      14         16.638
LGA    I      15      I      15         14.831
LGA    T      16      T      16         18.395
LGA    A      17      A      17         21.439
LGA    F      18      F      18         19.303
LGA    T      19      T      19         19.874
LGA    M      20      M      20         23.498
LGA    K      21      K      21         25.151
LGA    S      22      S      22         23.698
LGA    D      23      D      23         27.701
LGA    R      24      R      24         24.875
LGA    R      25      R      25         27.188
LGA    N      26      N      26         24.989
LGA    C      27      C      27         24.220
LGA    D      28      D      28         22.692
LGA    L      29      L      29         20.390
LGA    S      30      S      30         19.495
LGA    F      31      F      31         14.786
LGA    S      32      S      32         11.027
LGA    N      33      N      33         12.403
LGA    L      34      L      34          9.379
LGA    C      35      C      35          6.745
LGA    S      36      S      36          6.854
LGA    W      37      W      37          9.243
LGA    R      38      R      38          8.795
LGA    F      39      F      39          8.646
LGA    L      40      L      40          8.142
LGA    Y      41      Y      41          4.503
LGA    D      42      D      42          3.220
LGA    T      43      T      43          3.045
LGA    Q      44      Q      44          3.240
LGA    F      45      F      45          2.279
LGA    A      46      A      46          3.212
LGA    V      47      V      47          2.497
LGA    I      48      I      48          1.720
LGA    D      49      D      49          0.875
LGA    D      50      D      50          2.384
LGA    F      51      F      51          3.092
LGA    L      52      L      52          3.319
LGA    V      53      V      53          2.990
LGA    F      54      F      54          1.865
LGA    K      55      K      55          1.471
LGA    F      56      F      56          1.137
LGA    W      57      W      57          2.038
LGA    A      58      A      58          3.910
LGA    G      59      G      59          1.686
LGA    E      60      E      60          2.223
LGA    Q      61      Q      61          2.110
LGA    L      62      L      62          3.437
LGA    A      63      A      63          1.417
LGA    Y      64      Y      64          1.695
LGA    M      65      M      65          3.500
LGA    M      66      M      66          2.829
LGA    P      67      P      67          2.953
LGA    V      68      V      68          3.794
LGA    G      69      G      69          2.135
LGA    N      70      N      70          5.882
LGA    G      71      G      71         12.075
LGA    D      72      D      72         14.665
LGA    L      73      L      73         11.922
LGA    K      74      K      74         18.791
LGA    A      75      A      75         21.073
LGA    V      76      V      76         15.732
LGA    L      77      L      77         14.804
LGA    R      78      R      78         21.999
LGA    K      79      K      79         22.315
LGA    L      80      L      80         16.563
LGA    I      81      I      81         19.260
LGA    E      82      E      82         25.477
LGA    D      83      D      83         23.181
LGA    A      84      A      84         18.612
LGA    D      85      D      85         24.085
LGA    K      86      K      86         28.100
LGA    E      87      E      87         24.218
LGA    K      88      K      88         22.214
LGA    H      89      H      89         16.072
LGA    N      90      N      90         12.203
LGA    F      91      F      91          9.806
LGA    C      92      C      92          3.371
LGA    M      93      M      93          2.643
LGA    L      94      L      94          5.107
LGA    G      95      G      95          6.449
LGA    V      96      V      96          5.908
LGA    C      97      C      97          7.823
LGA    S      98      S      98          6.418
LGA    N      99      N      99          6.177
LGA    M     100      M     100          6.507
LGA    R     101      R     101          3.885
LGA    A     102      A     102          3.904
LGA    D     103      D     103          6.918
LGA    L     104      L     104          6.827
LGA    E     105      E     105          7.050
LGA    A     106      A     106          9.137
LGA    I     107      I     107         11.520
LGA    L     108      L     108         12.008
LGA    P     109      P     109         11.911
LGA    E     110      E     110         12.267
LGA    R     111      R     111         14.548
LGA    F     112      F     112         15.171
LGA    I     113      I     113         15.966
LGA    F     114      F     114         16.860
LGA    T     115      T     115         18.582
LGA    E     116      E     116         20.415
LGA    D     117      D     117         21.703
LGA    K     290      K     290          6.910
LGA    Y     291      Y     291          4.794
LGA    M     292      M     292          2.086
LGA    A     293      A     293          2.358
LGA    C     294      C     294          8.046
LGA    L     295      L     295          8.827
LGA    K     296      K     296         11.710
LGA    D     297      D     297         14.561
LGA    H     298      H     298         11.281

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     38    2.64    27.381    25.244     1.389

LGA_LOCAL      RMSD =  2.636  Number of atoms =   38  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.348  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 11.613  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.197972 * X  +   0.825990 * Y  +   0.527776 * Z  +  12.485448
  Y_new =  -0.020561 * X  +   0.541813 * Y  +  -0.840247 * Z  +  40.688919
  Z_new =  -0.979992 * X  +   0.155494 * Y  +   0.124247 * Z  +   1.624961 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.896637   -2.244956  [ DEG:    51.3735   -128.6265 ]
  Theta =   1.370421    1.771171  [ DEG:    78.5194    101.4806 ]
  Phi   =  -0.103486    3.038106  [ DEG:    -5.9293    174.0707 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS599_3-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS599_3-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   38   2.64  25.244    11.61
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS599_3-D1
PFRMAT TS                                                                       
TARGET T0372                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      47.408  60.097  -3.860  1.00  0.00              
ATOM      2  CA  ILE     2      47.193  57.673  -0.860  1.00  0.00              
ATOM      3  CA  PRO     3      48.432  54.228  -0.897  1.00  0.00              
ATOM      4  CA  PHE     4      48.202  51.895   2.146  1.00  0.00              
ATOM      5  CA  LYS     5      50.126  48.748   2.054  1.00  0.00              
ATOM      6  CA  ASP     6      49.439  47.067   5.366  1.00  0.00              
ATOM      7  CA  ILE     7      49.026  50.123   7.602  1.00  0.00              
ATOM      8  CA  THR     8      50.702  49.561  10.834  1.00  0.00              
ATOM      9  CA  LEU     9      49.561  50.450  14.292  1.00  0.00              
ATOM     10  CA  ALA    10      52.357  50.540  16.837  1.00  0.00              
ATOM     11  CA  ASP    11      50.723  49.114  19.983  1.00  0.00              
ATOM     12  CA  ARG    12      51.627  45.455  20.325  1.00  0.00              
ATOM     13  CA  ASP    13      48.349  44.332  21.749  1.00  0.00              
ATOM     14  CA  THR    14      46.313  46.021  19.045  1.00  0.00              
ATOM     15  CA  ILE    15      48.333  44.633  16.194  1.00  0.00              
ATOM     16  CA  THR    16      48.150  41.167  17.443  1.00  0.00              
ATOM     17  CA  ALA    17      44.432  41.247  17.981  1.00  0.00              
ATOM     18  CA  PHE    18      43.742  42.602  14.542  1.00  0.00              
ATOM     19  CA  THR    19      45.916  40.017  12.802  1.00  0.00              
ATOM     20  CA  MET    20      44.381  37.141  14.682  1.00  0.00              
ATOM     21  CA  LYS    21      40.836  38.110  13.977  1.00  0.00              
ATOM     22  CA  SER    22      41.377  38.455  10.262  1.00  0.00              
ATOM     23  CA  ASP    23      43.150  35.158   9.784  1.00  0.00              
ATOM     24  CA  ARG    24      46.291  36.567   8.407  1.00  0.00              
ATOM     25  CA  ARG    25      49.528  34.680   8.047  1.00  0.00              
ATOM     26  CA  ASN    26      52.430  36.822   9.138  1.00  0.00              
ATOM     27  CA  CYS    27      54.574  37.239   6.140  1.00  0.00              
ATOM     28  CA  ASP    28      57.021  39.858   7.219  1.00  0.00              
ATOM     29  CA  LEU    29      55.164  41.717   9.886  1.00  0.00              
ATOM     30  CA  SER    30      57.170  42.973  12.749  1.00  0.00              
ATOM     31  CA  PHE    31      54.885  42.794  15.817  1.00  0.00              
ATOM     32  CA  SER    32      54.726  46.498  16.158  1.00  0.00              
ATOM     33  CA  ASN    33      53.591  47.097  12.656  1.00  0.00              
ATOM     34  CA  LEU    34      51.080  44.324  11.779  1.00  0.00              
ATOM     35  CA  CYS    35      51.381  42.883   8.376  1.00  0.00              
ATOM     36  CA  SER    36      48.969  40.331   6.921  1.00  0.00              
ATOM     37  CA  TRP    37      50.005  38.052   4.059  1.00  0.00              
ATOM     38  CA  ARG    38      47.677  35.772   2.240  1.00  0.00              
ATOM     39  CA  PHE    39      48.858  35.541  -1.245  1.00  0.00              
ATOM     40  CA  LEU    40      46.537  38.041  -2.850  1.00  0.00              
ATOM     41  CA  TYR    41      46.235  40.548  -0.083  1.00  0.00              
ATOM     42  CA  ASP    42      47.025  43.798  -1.592  1.00  0.00              
ATOM     43  CA  THR    43      45.770  46.844   0.116  1.00  0.00              
ATOM     44  CA  GLN    44      45.257  49.984  -1.933  1.00  0.00              
ATOM     45  CA  PHE    45      44.232  53.178  -0.330  1.00  0.00              
ATOM     46  CA  ALA    46      43.075  56.123  -2.449  1.00  0.00              
ATOM     47  CA  VAL    47      42.427  59.498  -1.013  1.00  0.00              
ATOM     48  CA  ILE    48      40.406  61.940  -3.071  1.00  0.00              
ATOM     49  CA  ASP    49      39.566  65.396  -1.759  1.00  0.00              
ATOM     50  CA  ASP    50      37.268  64.316   1.008  1.00  0.00              
ATOM     51  CA  PHE    51      36.393  60.864  -0.218  1.00  0.00              
ATOM     52  CA  LEU    52      38.196  57.752   0.964  1.00  0.00              
ATOM     53  CA  VAL    53      38.567  54.711  -1.312  1.00  0.00              
ATOM     54  CA  PHE    54      39.818  51.502   0.104  1.00  0.00              
ATOM     55  CA  LYS    55      40.650  48.568  -2.125  1.00  0.00              
ATOM     56  CA  PHE    56      41.294  45.175  -0.573  1.00  0.00              
ATOM     57  CA  TRP    57      42.443  42.283  -2.701  1.00  0.00              
ATOM     58  CA  ALA    58      41.844  38.798  -1.415  1.00  0.00              
ATOM     59  CA  GLY    59      40.205  36.084  -3.447  1.00  0.00              
ATOM     60  CA  GLU    60      36.906  37.739  -3.931  1.00  0.00              
ATOM     61  CA  GLN    61      37.735  41.319  -4.192  1.00  0.00              
ATOM     62  CA  LEU    62      36.560  43.701  -1.534  1.00  0.00              
ATOM     63  CA  ALA    63      35.959  47.382  -2.301  1.00  0.00              
ATOM     64  CA  TYR    64      35.344  49.857   0.440  1.00  0.00              
ATOM     65  CA  MET    65      34.089  53.285  -0.264  1.00  0.00              
ATOM     66  CA  MET    66      34.180  55.813   2.444  1.00  0.00              
ATOM     67  CA  PRO    67      32.587  59.168   2.191  1.00  0.00              
ATOM     68  CA  VAL    68      34.942  61.776   3.679  1.00  0.00              
ATOM     69  CA  GLY    69      33.693  63.827   6.604  1.00  0.00              
ATOM     70  CA  ASN    70      36.557  64.150   9.030  1.00  0.00              
ATOM     71  CA  GLY    71      35.249  62.402  12.072  1.00  0.00              
ATOM     72  CA  ASP    72      33.563  59.418  10.526  1.00  0.00              
ATOM     73  CA  LEU    73      35.549  57.683   7.836  1.00  0.00              
ATOM     74  CA  LYS    74      37.709  55.452   9.990  1.00  0.00              
ATOM     75  CA  ALA    75      34.817  54.076  12.001  1.00  0.00              
ATOM     76  CA  VAL    76      32.787  53.256   8.962  1.00  0.00              
ATOM     77  CA  LEU    77      35.688  51.407   7.307  1.00  0.00              
ATOM     78  CA  ARG    78      36.417  49.399  10.397  1.00  0.00              
ATOM     79  CA  LYS    79      32.826  48.246  10.816  1.00  0.00              
ATOM     80  CA  LEU    80      32.610  47.165   7.218  1.00  0.00              
ATOM     81  CA  ILE    81      35.890  45.209   7.568  1.00  0.00              
ATOM     82  CA  GLU    82      34.809  43.441  10.707  1.00  0.00              
ATOM     83  CA  ASP    83      31.474  42.439   9.257  1.00  0.00              
ATOM     84  CA  ALA    84      32.989  41.164   6.045  1.00  0.00              
ATOM     85  CA  ASP    85      35.568  39.193   7.740  1.00  0.00              
ATOM     86  CA  LYS    86      33.191  37.461  10.107  1.00  0.00              
ATOM     87  CA  GLU    87      30.792  36.262   7.587  1.00  0.00              
ATOM     88  CA  LYS    88      33.354  35.240   4.982  1.00  0.00              
ATOM     89  CA  HIS    89      31.828  37.463   2.358  1.00  0.00              
ATOM     90  CA  ASN    90      33.272  39.366  -0.482  1.00  0.00              
ATOM     91  CA  PHE    91      31.855  42.694  -0.262  1.00  0.00              
ATOM     92  CA  CYS    92      31.121  46.111  -1.548  1.00  0.00              
ATOM     93  CA  MET    93      30.871  48.603   1.209  1.00  0.00              
ATOM     94  CA  LEU    94      29.401  52.074   0.642  1.00  0.00              
ATOM     95  CA  GLY    95      29.399  54.795   3.205  1.00  0.00              
ATOM     96  CA  VAL    96      26.109  56.637   3.097  1.00  0.00              
ATOM     97  CA  CYS    97      25.176  59.190   5.710  1.00  0.00              
ATOM     98  CA  SER    98      21.849  58.716   7.397  1.00  0.00              
ATOM     99  CA  ASN    99      20.067  61.543   5.556  1.00  0.00              
ATOM    100  CA  MET   100      21.181  60.391   2.239  1.00  0.00              
ATOM    101  CA  ARG   101      20.238  56.846   2.977  1.00  0.00              
ATOM    102  CA  ALA   102      16.795  57.958   3.820  1.00  0.00              
ATOM    103  CA  ASP   103      16.368  59.643   0.556  1.00  0.00              
ATOM    104  CA  LEU   104      17.307  56.520  -1.163  1.00  0.00              
ATOM    105  CA  GLU   105      14.861  54.600   0.867  1.00  0.00              
ATOM    106  CA  ALA   106      12.162  56.933  -0.274  1.00  0.00              
ATOM    107  CA  ILE   107      12.989  56.464  -3.971  1.00  0.00              
ATOM    108  CA  LEU   108      13.017  52.701  -3.876  1.00  0.00              
ATOM    109  CA  PRO   109       9.865  52.338  -1.882  1.00  0.00              
ATOM    110  CA  GLU   110       7.407  54.252  -4.059  1.00  0.00              
ATOM    111  CA  ARG   111       8.223  52.588  -7.310  1.00  0.00              
ATOM    112  CA  PHE   112       8.331  49.064  -5.982  1.00  0.00              
ATOM    113  CA  ILE   113       6.370  46.254  -7.565  1.00  0.00              
ATOM    114  CA  PHE   114       6.125  43.114  -5.427  1.00  0.00              
ATOM    115  CA  THR   115       5.681  39.680  -6.854  1.00  0.00              
ATOM    116  CA  GLU   116       5.102  36.775  -4.473  1.00  0.00              
ATOM    117  CA  ASP   117       6.401  33.392  -5.332  1.00  0.00              
ATOM    290  CA  LYS   290      27.361  40.937   3.292  1.00  0.00              
ATOM    291  CA  TYR   291      27.791  43.745   0.751  1.00  0.00              
ATOM    292  CA  MET   292      26.759  47.156   2.025  1.00  0.00              
ATOM    293  CA  ALA   293      25.355  49.549  -0.543  1.00  0.00              
ATOM    294  CA  CYS   294      25.515  53.276  -0.719  1.00  0.00              
ATOM    295  CA  LEU   295      23.012  54.802  -3.102  1.00  0.00              
ATOM    296  CA  LYS   296      24.782  57.857  -4.387  1.00  0.00              
ATOM    297  CA  ASP   297      21.994  59.171  -6.566  1.00  0.00              
ATOM    298  CA  HIS   298      20.875  55.759  -7.781  1.00  0.00              
TER                                                                             
END
