
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS599_4-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS599_4-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    66        35 - 100         4.82    20.56
  LONGEST_CONTINUOUS_SEGMENT:    66        36 - 101         4.69    20.66
  LONGEST_CONTINUOUS_SEGMENT:    66        37 - 102         4.90    20.64
  LCS_AVERAGE:     39.59

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34        60 - 93          2.00    23.23
  LONGEST_CONTINUOUS_SEGMENT:    34        61 - 94          1.99    23.43
  LCS_AVERAGE:     16.27

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        72 - 92          0.84    21.91
  LCS_AVERAGE:      8.11

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      3    7   18     0    3    4    6    6    8    9   13   13   16   18   21   22   26   32   32   34   35   37   39 
LCS_GDT     I       2     I       2      5    7   18     0    4    5    6    7    8    9   13   13   16   19   24   25   28   29   32   35   35   37   39 
LCS_GDT     P       3     P       3      5    7   21     3    4    6    8   11   14   15   17   18   19   22   24   26   28   29   32   35   35   37   39 
LCS_GDT     F       4     F       4      5    7   37     3    4    6    9   11   14   15   17   18   19   21   25   28   32   32   32   33   35   37   39 
LCS_GDT     K       5     K       5      5    7   39     3    4    5    6    7    8   11   13   17   22   28   29   31   32   35   35   36   37   39   45 
LCS_GDT     D       6     D       6      5    7   39     3    4    5    6   10   17   21   25   28   30   32   34   36   37   43   50   53   56   62   66 
LCS_GDT     I       7     I       7      4    7   39     3    4    4    6    7   17   21   25   28   31   32   34   36   37   39   41   44   59   62   66 
LCS_GDT     T       8     T       8      4    5   39     3    4    5    9   10   14   18   21   27   31   32   34   37   48   54   55   61   62   63   66 
LCS_GDT     L       9     L       9      4    6   39     3    4    4    6    8   12   15   19   24   28   32   34   37   42   48   53   57   59   63   66 
LCS_GDT     A      10     A      10      3   11   39     3    3    5    5    7   12   16   21   28   31   32   34   37   38   42   49   53   59   61   64 
LCS_GDT     D      11     D      11     12   24   39     7    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     R      12     R      12     12   24   39     7    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     D      13     D      13     12   24   39     7    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     T      14     T      14     12   24   39     7    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     I      15     I      15     12   24   39     7    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     T      16     T      16     12   24   39     7    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     A      17     A      17     12   24   39     7    9   14   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     F      18     F      18     12   24   39     5    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     T      19     T      19     12   24   39     5    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     M      20     M      20     12   24   39     5    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     K      21     K      21     12   24   39     4    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     S      22     S      22     12   24   39     5    9   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     D      23     D      23     11   24   39     4    6   15   19   21   23   24   25   28   31   32   34   36   37   39   40   44   46   49   50 
LCS_GDT     R      24     R      24      7   24   39     4    8   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   46   50   54 
LCS_GDT     R      25     R      25      7   24   39     4    6   12   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     N      26     N      26      7   24   39     4    6   12   17   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     C      27     C      27      5   24   39     3    8   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     D      28     D      28      5   24   39     3    4    5    8   20   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     L      29     L      29      6   24   39     4    6    6    6    8   11   20   24   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     S      30     S      30      6   24   39     5    6    7   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     F      31     F      31      6   24   39     5    9   14   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     S      32     S      32      6   24   39     5    6   12   17   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     N      33     N      33      6   24   39     5    6   12   15   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     L      34     L      34      6   24   62     5    7   15   19   21   23   24   25   28   31   32   34   36   37   39   41   44   47   50   54 
LCS_GDT     C      35     C      35      3    8   66     3    4   13   17   20   23   24   25   28   31   32   34   37   39   44   51   55   59   63   66 
LCS_GDT     S      36     S      36      3    6   66     1    3    6    8   10   16   23   33   40   47   50   54   57   59   61   61   62   63   64   66 
LCS_GDT     W      37     W      37      3    6   66     3    3    4    8   10   16   24   35   43   48   51   56   57   59   61   61   62   63   64   66 
LCS_GDT     R      38     R      38      4    6   66     4    4    4    8   10   16   24   33   43   48   52   57   57   59   61   61   62   63   64   66 
LCS_GDT     F      39     F      39      4    9   66     4    4    4    5   11   17   26   35   47   50   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     L      40     L      40      6   15   66     4    4    9   15   30   39   42   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     Y      41     Y      41      7   15   66     4    5    8   13   28   38   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     D      42     D      42      7   15   66     3   12   17   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     T      43     T      43      7   15   66     3   15   21   28   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     Q      44     Q      44      7   15   66     3    6   17   30   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     F      45     F      45      7   15   66     3   14   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     A      46     A      46      7   15   66     3    6    8   16   32   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     V      47     V      47      7   15   66     3    8   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     I      48     I      48      7   15   66     4    4    7   12   17   26   37   48   50   51   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     D      49     D      49      5   15   66     4    4    7   12   24   30   40   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     D      50     D      50      4   15   66     6   15   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     F      51     F      51      8   15   66     4   10   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     L      52     L      52      8   15   66     4    7    7   10   34   41   44   47   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     V      53     V      53      8   15   66     4   11   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     F      54     F      54      8   15   66     4    7   19   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     K      55     K      55      8   15   66     4    7   17   30   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     F      56     F      56      8   15   66     3   15   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     W      57     W      57      8   15   66     8   13   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     A      58     A      58      8   15   66     3    5    7   25   28   35   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     G      59     G      59      5   15   66     3   10   21   29   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     E      60     E      60      6   34   66     3    5   10   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     Q      61     Q      61      6   34   66     3   12   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     L      62     L      62      6   34   66     3    9   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     A      63     A      63      6   34   66     3   13   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     Y      64     Y      64      6   34   66     5   12   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     M      65     M      65      6   34   66     4   10   22   30   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     M      66     M      66      6   34   66     4    6   16   21   28   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     P      67     P      67      5   34   66     4    4    6   19   29   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     V      68     V      68      5   34   66     4    4    8   20   29   33   40   46   49   51   54   55   56   58   58   59   61   63   64   64 
LCS_GDT     G      69     G      69      5   34   66     4    4   11   20   29   33   40   46   49   51   54   55   56   58   58   59   61   63   64   64 
LCS_GDT     N      70     N      70      5   34   66     3    4   11   18   22   31   36   42   48   51   53   55   56   58   58   59   61   63   64   64 
LCS_GDT     G      71     G      71      5   34   66     3    6   18   26   29   34   42   46   49   51   54   55   56   58   58   59   61   63   64   64 
LCS_GDT     D      72     D      72     21   34   66    10   18   21   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   64 
LCS_GDT     L      73     L      73     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     K      74     K      74     21   34   66    11   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     A      75     A      75     21   34   66    11   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     V      76     V      76     21   34   66    11   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     L      77     L      77     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     R      78     R      78     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     K      79     K      79     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     L      80     L      80     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     I      81     I      81     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     E      82     E      82     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     D      83     D      83     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     A      84     A      84     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     D      85     D      85     21   34   66    12   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     K      86     K      86     21   34   66    11   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     E      87     E      87     21   34   66    11   19   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     K      88     K      88     21   34   66    12   19   22   30   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     H      89     H      89     21   34   66     4   19   20   26   33   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     N      90     N      90     21   34   66     9   19   20   26   30   39   44   47   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     F      91     F      91     21   34   66    12   19   20   26   37   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     C      92     C      92     21   34   66     5   13   22   31   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     M      93     M      93      8   34   66     5    6   13   23   38   41   44   48   50   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     L      94     L      94     15   34   66     5   11   14   16   20   28   37   45   49   52   54   57   57   59   61   61   62   63   64   66 
LCS_GDT     G      95     G      95     15   20   66     5    6   14   15   17   20   27   35   42   49   51   53   56   58   58   59   61   63   64   64 
LCS_GDT     V      96     V      96     15   17   66     7   13   14   18   24   28   34   45   48   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     C      97     C      97     15   17   66     9   13   14   18   24   28   31   42   47   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     S      98     S      98     15   17   66     9   13   14   16   17   18   18   30   36   40   48   52   55   59   61   61   62   63   63   66 
LCS_GDT     N      99     N      99     15   17   66    10   13   14   17   21   25   32   41   47   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     M     100     M     100     15   17   66    10   13   14   16   17   24   32   37   46   52   55   57   57   59   61   61   62   63   64   66 
LCS_GDT     R     101     R     101     15   17   66    10   13   14   16   17   18   20   25   29   34   42   47   53   57   61   61   62   63   63   66 
LCS_GDT     A     102     A     102     15   17   66    10   13   14   16   17   18   18   21   28   33   37   41   47   53   58   61   62   63   63   66 
LCS_GDT     D     103     D     103     15   17   63    10   13   14   16   17   18   18   20   24   29   34   41   43   49   54   58   62   63   63   64 
LCS_GDT     L     104     L     104     15   17   27    10   13   14   16   17   18   18   19   21   25   31   34   38   44   47   51   58   62   63   64 
LCS_GDT     E     105     E     105     15   17   27    10   13   14   16   17   18   18   19   20   22   23   26   31   35   37   39   43   48   53   56 
LCS_GDT     A     106     A     106     15   17   27    10   13   14   16   17   18   18   19   20   21   23   26   31   35   37   39   43   47   51   55 
LCS_GDT     I     107     I     107     15   17   27    10   13   14   16   17   18   18   19   20   21   23   26   27   30   33   39   43   47   50   54 
LCS_GDT     L     108     L     108     15   17   27    10   13   14   16   17   18   18   19   20   22   24   26   27   33   38   41   44   47   50   54 
LCS_GDT     P     109     P     109     15   17   27     4    4   11   15   17   18   18   19   20   21   24   26   28   33   38   41   44   47   50   54 
LCS_GDT     E     110     E     110      4    9   27     3    4    4    8    8   14   15   17   24   25   26   28   31   34   38   41   44   47   50   54 
LCS_GDT     R     111     R     111      7    9   26     4    7    7    9   11   14   15   17   24   25   26   29   32   34   38   41   44   47   50   54 
LCS_GDT     F     112     F     112      7    9   26     3    7    7    9   11   14   15   17   18   21   23   26   28   34   35   41   44   46   50   54 
LCS_GDT     I     113     I     113      7    9   25     4    7    7    8   11   14   15   17   19   21   23   26   27   30   32   33   36   40   45   48 
LCS_GDT     F     114     F     114      7    9   23     4    7    7    9   11   14   15   17   18   19   21   24   27   30   32   32   35   35   39   43 
LCS_GDT     T     115     T     115      7    9   23     4    7    7    9   11   14   15   17   18   19   21   24   27   30   32   32   35   35   37   40 
LCS_GDT     E     116     E     116      7    9   23     4    7    7    9   11   14   15   17   18   19   21   24   25   27   29   32   33   35   37   40 
LCS_GDT     D     117     D     117      7    9   23     4    7    7    9   11   14   15   17   18   19   21   24   25   26   28   32   33   35   37   39 
LCS_GDT     K     290     K     290      7    9   10     3    6    7    9    9    9    9    9    9    9    9    9   10   12   12   12   12   12   14   16 
LCS_GDT     Y     291     Y     291      7    9   10     4    6    7    9    9    9    9    9    9    9    9   12   13   15   15   15   16   23   27   29 
LCS_GDT     M     292     M     292      7    9   10     4    6    7    9    9    9    9    9   11   12   13   14   16   18   20   23   24   27   27   29 
LCS_GDT     A     293     A     293      7    9   10     4    6    7    9    9    9    9    9   11   12   12   13   16   25   25   25   26   27   33   37 
LCS_GDT     C     294     C     294      7    9   10     4    6    7    9    9    9   10   11   12   13   16   20   22   25   25   25   26   28   34   37 
LCS_GDT     L     295     L     295      7    9   10     4    6    7    9    9    9   10   11   12   13   16   20   22   25   25   25   27   29   34   37 
LCS_GDT     K     296     K     296      7    9   10     3    5    7    9    9    9    9   10   12   13   16   20   22   25   25   25   26   28   33   37 
LCS_GDT     D     297     D     297      4    9   10     3    4    7    9    9    9    9   11   12   13   15   17   20   25   25   25   26   28   33   37 
LCS_GDT     H     298     H     298      3    9   10     3    3    6    9    9    9    9    9   12   13   16   20   22   25   25   25   26   28   33   37 
LCS_AVERAGE  LCS_A:  21.32  (   8.11   16.27   39.59 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     19     22     31     38     41     44     48     50     52     55     57     57     59     61     61     62     63     64     66 
GDT PERCENT_CA   9.52  15.08  17.46  24.60  30.16  32.54  34.92  38.10  39.68  41.27  43.65  45.24  45.24  46.83  48.41  48.41  49.21  50.00  50.79  52.38
GDT RMS_LOCAL    0.31   0.58   1.00   1.44   1.67   1.79   1.94   2.41   2.46   2.71   3.24   3.42   3.42   3.70   4.08   4.08   4.38   4.15   4.31   5.46
GDT RMS_ALL_CA  22.22  22.12  22.31  21.32  21.35  21.33  21.38  20.93  20.96  21.10  20.49  20.41  20.41  20.11  19.97  19.97  19.80  20.99  20.81  19.05

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         41.878
LGA    I       2      I       2         35.388
LGA    P       3      P       3         30.833
LGA    F       4      F       4         24.528
LGA    K       5      K       5         18.624
LGA    D       6      D       6         12.658
LGA    I       7      I       7         13.638
LGA    T       8      T       8         12.693
LGA    L       9      L       9         15.586
LGA    A      10      A      10         18.696
LGA    D      11      D      11         25.254
LGA    R      12      R      12         27.299
LGA    D      13      D      13         32.428
LGA    T      14      T      14         31.349
LGA    I      15      I      15         28.818
LGA    T      16      T      16         31.742
LGA    A      17      A      17         35.795
LGA    F      18      F      18         34.395
LGA    T      19      T      19         32.059
LGA    M      20      M      20         35.005
LGA    K      21      K      21         38.350
LGA    S      22      S      22         36.396
LGA    D      23      D      23         38.007
LGA    R      24      R      24         33.205
LGA    R      25      R      25         30.906
LGA    N      26      N      26         27.323
LGA    C      27      C      27         23.066
LGA    D      28      D      28         21.573
LGA    L      29      L      29         24.602
LGA    S      30      S      30         25.400
LGA    F      31      F      31         24.766
LGA    S      32      S      32         23.298
LGA    N      33      N      33         21.163
LGA    L      34      L      34         19.653
LGA    C      35      C      35         14.410
LGA    S      36      S      36          9.658
LGA    W      37      W      37          8.075
LGA    R      38      R      38          7.566
LGA    F      39      F      39          6.360
LGA    L      40      L      40          3.191
LGA    Y      41      Y      41          3.720
LGA    D      42      D      42          2.245
LGA    T      43      T      43          1.914
LGA    Q      44      Q      44          1.730
LGA    F      45      F      45          1.669
LGA    A      46      A      46          1.976
LGA    V      47      V      47          1.863
LGA    I      48      I      48          3.760
LGA    D      49      D      49          3.224
LGA    D      50      D      50          2.113
LGA    F      51      F      51          0.612
LGA    L      52      L      52          4.329
LGA    V      53      V      53          0.675
LGA    F      54      F      54          2.565
LGA    K      55      K      55          2.154
LGA    F      56      F      56          1.144
LGA    W      57      W      57          2.114
LGA    A      58      A      58          3.809
LGA    G      59      G      59          0.909
LGA    E      60      E      60          2.033
LGA    Q      61      Q      61          2.466
LGA    L      62      L      62          2.419
LGA    A      63      A      63          2.405
LGA    Y      64      Y      64          2.150
LGA    M      65      M      65          3.066
LGA    M      66      M      66          3.997
LGA    P      67      P      67          3.809
LGA    V      68      V      68          7.539
LGA    G      69      G      69          8.627
LGA    N      70      N      70          9.746
LGA    G      71      G      71          8.377
LGA    D      72      D      72          3.335
LGA    L      73      L      73          3.241
LGA    K      74      K      74          3.518
LGA    A      75      A      75          3.940
LGA    V      76      V      76          3.166
LGA    L      77      L      77          2.816
LGA    R      78      R      78          3.734
LGA    K      79      K      79          3.352
LGA    L      80      L      80          2.063
LGA    I      81      I      81          2.580
LGA    E      82      E      82          3.180
LGA    D      83      D      83          1.864
LGA    A      84      A      84          1.186
LGA    D      85      D      85          2.918
LGA    K      86      K      86          2.485
LGA    E      87      E      87          0.585
LGA    K      88      K      88          2.927
LGA    H      89      H      89          3.395
LGA    N      90      N      90          4.504
LGA    F      91      F      91          3.145
LGA    C      92      C      92          1.656
LGA    M      93      M      93          2.730
LGA    L      94      L      94          5.321
LGA    G      95      G      95          8.257
LGA    V      96      V      96          6.450
LGA    C      97      C      97          7.542
LGA    S      98      S      98         12.139
LGA    N      99      N      99         10.077
LGA    M     100      M     100          9.159
LGA    R     101      R     101         13.803
LGA    A     102      A     102         17.509
LGA    D     103      D     103         17.157
LGA    L     104      L     104         17.960
LGA    E     105      E     105         22.791
LGA    A     106      A     106         25.465
LGA    I     107      I     107         25.858
LGA    L     108      L     108         26.492
LGA    P     109      P     109         31.472
LGA    E     110      E     110         36.650
LGA    R     111      R     111         34.592
LGA    F     112      F     112         30.736
LGA    I     113      I     113         30.413
LGA    F     114      F     114         28.281
LGA    T     115      T     115         28.932
LGA    E     116      E     116         27.654
LGA    D     117      D     117         30.548
LGA    K     290      K     290         27.399
LGA    Y     291      Y     291         27.621
LGA    M     292      M     292         28.541
LGA    A     293      A     293         31.384
LGA    C     294      C     294         33.029
LGA    L     295      L     295         37.021
LGA    K     296      K     296         41.018
LGA    D     297      D     297         43.717
LGA    H     298      H     298         43.638

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     48    2.41    31.548    29.141     1.913

LGA_LOCAL      RMSD =  2.409  Number of atoms =   48  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.431  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 15.896  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.491756 * X  +   0.827694 * Y  +   0.270367 * Z  +  53.754494
  Y_new =  -0.264824 * X  +   0.153626 * Y  +  -0.951981 * Z  +  40.844547
  Z_new =  -0.829485 * X  +  -0.539742 * Y  +   0.143646 * Z  +   8.715346 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.310686    1.830906  [ DEG:   -75.0968    104.9032 ]
  Theta =   0.978184    2.163409  [ DEG:    56.0458    123.9542 ]
  Phi   =  -2.647601    0.493992  [ DEG:  -151.6964     28.3037 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS599_4-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS599_4-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   48   2.41  29.141    15.90
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS599_4-D1
PFRMAT TS                                                                       
TARGET T0372                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      41.433  30.857  21.852  1.00  0.00              
ATOM      2  CA  ILE     2      43.022  33.235  19.626  1.00  0.00              
ATOM      3  CA  PRO     3      43.960  33.698  15.575  1.00  0.00              
ATOM      4  CA  PHE     4      46.813  35.733  14.180  1.00  0.00              
ATOM      5  CA  LYS     5      45.999  38.636  12.054  1.00  0.00              
ATOM      6  CA  ASP     6      49.179  40.068  10.761  1.00  0.00              
ATOM      7  CA  ILE     7      51.475  39.660  13.724  1.00  0.00              
ATOM      8  CA  THR     8      55.083  39.031  13.027  1.00  0.00              
ATOM      9  CA  LEU     9      57.086  36.639  15.097  1.00  0.00              
ATOM     10  CA  ALA    10      60.702  37.550  14.772  1.00  0.00              
ATOM     11  CA  ASP    11      63.244  34.761  14.910  1.00  0.00              
ATOM     12  CA  ARG    12      61.775  32.513  17.513  1.00  0.00              
ATOM     13  CA  ASP    13      64.638  32.575  20.076  1.00  0.00              
ATOM     14  CA  THR    14      64.743  36.376  19.991  1.00  0.00              
ATOM     15  CA  ILE    15      60.996  36.743  20.450  1.00  0.00              
ATOM     16  CA  THR    16      60.934  34.427  23.401  1.00  0.00              
ATOM     17  CA  ALA    17      63.795  36.149  25.094  1.00  0.00              
ATOM     18  CA  PHE    18      62.173  39.580  24.721  1.00  0.00              
ATOM     19  CA  THR    19      58.866  38.486  26.075  1.00  0.00              
ATOM     20  CA  MET    20      60.512  36.863  29.148  1.00  0.00              
ATOM     21  CA  LYS    21      62.426  40.003  29.956  1.00  0.00              
ATOM     22  CA  SER    22      59.392  42.216  29.763  1.00  0.00              
ATOM     23  CA  ASP    23      57.002  40.047  31.816  1.00  0.00              
ATOM     24  CA  ARG    24      54.227  39.700  29.353  1.00  0.00              
ATOM     25  CA  ARG    25      52.364  36.554  29.186  1.00  0.00              
ATOM     26  CA  ASN    26      50.704  35.862  26.111  1.00  0.00              
ATOM     27  CA  CYS    27      47.822  33.671  26.340  1.00  0.00              
ATOM     28  CA  ASP    28      46.510  33.224  22.944  1.00  0.00              
ATOM     29  CA  LEU    29      49.806  32.609  21.244  1.00  0.00              
ATOM     30  CA  SER    30      52.277  30.399  22.986  1.00  0.00              
ATOM     31  CA  PHE    31      55.719  31.744  22.156  1.00  0.00              
ATOM     32  CA  SER    32      56.664  28.890  19.887  1.00  0.00              
ATOM     33  CA  ASN    33      53.585  29.233  17.822  1.00  0.00              
ATOM     34  CA  LEU    34      53.591  32.933  16.998  1.00  0.00              
ATOM     35  CA  CYS    35      52.210  33.918  13.737  1.00  0.00              
ATOM     36  CA  SER    36      51.496  35.721  10.646  1.00  0.00              
ATOM     37  CA  TRP    37      48.338  35.536   8.598  1.00  0.00              
ATOM     38  CA  ARG    38      47.987  36.180   4.954  1.00  0.00              
ATOM     39  CA  PHE    39      44.943  34.376   3.482  1.00  0.00              
ATOM     40  CA  LEU    40      43.130  37.273   1.928  1.00  0.00              
ATOM     41  CA  TYR    41      45.892  39.813   1.502  1.00  0.00              
ATOM     42  CA  ASP    42      44.301  42.912   2.863  1.00  0.00              
ATOM     43  CA  THR    43      45.024  46.059   0.959  1.00  0.00              
ATOM     44  CA  GLN    44      44.061  49.310   2.434  1.00  0.00              
ATOM     45  CA  PHE    45      44.380  52.509   0.443  1.00  0.00              
ATOM     46  CA  ALA    46      43.534  55.890   2.067  1.00  0.00              
ATOM     47  CA  VAL    47      43.059  58.933  -0.157  1.00  0.00              
ATOM     48  CA  ILE    48      43.044  62.318   1.500  1.00  0.00              
ATOM     49  CA  ASP    49      41.818  65.468  -0.207  1.00  0.00              
ATOM     50  CA  ASP    50      38.067  64.964   0.100  1.00  0.00              
ATOM     51  CA  PHE    51      37.960  61.664   1.706  1.00  0.00              
ATOM     52  CA  LEU    52      38.097  58.357  -0.206  1.00  0.00              
ATOM     53  CA  VAL    53      38.678  55.084   1.548  1.00  0.00              
ATOM     54  CA  PHE    54      39.468  51.967  -0.550  1.00  0.00              
ATOM     55  CA  LYS    55      39.428  48.554   0.991  1.00  0.00              
ATOM     56  CA  PHE    56      40.673  45.615  -0.933  1.00  0.00              
ATOM     57  CA  TRP    57      40.276  42.139   0.363  1.00  0.00              
ATOM     58  CA  ALA    58      41.714  39.303  -1.651  1.00  0.00              
ATOM     59  CA  GLY    59      39.475  36.518  -2.962  1.00  0.00              
ATOM     60  CA  GLU    60      37.149  38.780  -4.839  1.00  0.00              
ATOM     61  CA  GLN    61      36.269  41.352  -2.347  1.00  0.00              
ATOM     62  CA  LEU    62      36.394  45.018  -3.190  1.00  0.00              
ATOM     63  CA  ALA    63      34.968  47.497  -0.710  1.00  0.00              
ATOM     64  CA  TYR    64      34.745  51.170  -1.501  1.00  0.00              
ATOM     65  CA  MET    65      33.889  53.667   1.168  1.00  0.00              
ATOM     66  CA  MET    66      32.667  57.074   0.095  1.00  0.00              
ATOM     67  CA  PRO    67      32.375  60.070   2.412  1.00  0.00              
ATOM     68  CA  VAL    68      28.847  61.469   2.554  1.00  0.00              
ATOM     69  CA  GLY    69      28.012  64.925   1.323  1.00  0.00              
ATOM     70  CA  ASN    70      25.064  64.796  -1.105  1.00  0.00              
ATOM     71  CA  GLY    71      26.485  66.631  -4.062  1.00  0.00              
ATOM     72  CA  ASP    72      29.616  64.637  -4.379  1.00  0.00              
ATOM     73  CA  LEU    73      28.336  61.187  -3.684  1.00  0.00              
ATOM     74  CA  LYS    74      27.311  60.066  -7.060  1.00  0.00              
ATOM     75  CA  ALA    75      30.579  61.020  -8.717  1.00  0.00              
ATOM     76  CA  VAL    76      32.620  59.298  -6.038  1.00  0.00              
ATOM     77  CA  LEU    77      30.655  56.157  -6.364  1.00  0.00              
ATOM     78  CA  ARG    78      30.957  56.112 -10.164  1.00  0.00              
ATOM     79  CA  LYS    79      34.730  56.585  -9.914  1.00  0.00              
ATOM     80  CA  LEU    80      35.070  53.839  -7.429  1.00  0.00              
ATOM     81  CA  ILE    81      33.119  51.463  -9.634  1.00  0.00              
ATOM     82  CA  GLU    82      35.176  52.304 -12.663  1.00  0.00              
ATOM     83  CA  ASP    83      38.526  51.747 -10.877  1.00  0.00              
ATOM     84  CA  ALA    84      37.374  48.413  -9.502  1.00  0.00              
ATOM     85  CA  ASP    85      36.219  47.331 -12.925  1.00  0.00              
ATOM     86  CA  LYS    86      39.489  48.195 -14.631  1.00  0.00              
ATOM     87  CA  GLU    87      41.298  46.088 -12.024  1.00  0.00              
ATOM     88  CA  LYS    88      38.950  43.186 -12.032  1.00  0.00              
ATOM     89  CA  HIS    89      37.663  43.743  -8.514  1.00  0.00              
ATOM     90  CA  ASN    90      34.121  43.437  -7.295  1.00  0.00              
ATOM     91  CA  PHE    91      33.239  46.631  -5.691  1.00  0.00              
ATOM     92  CA  CYS    92      30.585  47.465  -3.195  1.00  0.00              
ATOM     93  CA  MET    93      30.044  51.135  -2.510  1.00  0.00              
ATOM     94  CA  LEU    94      29.208  52.342   1.030  1.00  0.00              
ATOM     95  CA  GLY    95      28.340  55.922   1.746  1.00  0.00              
ATOM     96  CA  VAL    96      29.545  57.027   5.040  1.00  0.00              
ATOM     97  CA  CYS    97      27.397  58.764   7.630  1.00  0.00              
ATOM     98  CA  SER    98      28.553  62.028   9.105  1.00  0.00              
ATOM     99  CA  ASN    99      29.725  60.579  12.411  1.00  0.00              
ATOM    100  CA  MET   100      31.824  57.965  10.705  1.00  0.00              
ATOM    101  CA  ARG   101      33.436  60.486   8.402  1.00  0.00              
ATOM    102  CA  ALA   102      34.450  62.724  11.270  1.00  0.00              
ATOM    103  CA  ASP   103      36.006  59.790  13.126  1.00  0.00              
ATOM    104  CA  LEU   104      37.931  58.626  10.062  1.00  0.00              
ATOM    105  CA  GLU   105      39.231  62.120   9.391  1.00  0.00              
ATOM    106  CA  ALA   106      40.524  62.301  12.924  1.00  0.00              
ATOM    107  CA  ILE   107      42.283  59.009  12.869  1.00  0.00              
ATOM    108  CA  LEU   108      43.934  59.642   9.537  1.00  0.00              
ATOM    109  CA  PRO   109      45.081  63.210  10.358  1.00  0.00              
ATOM    110  CA  GLU   110      47.199  62.438  13.361  1.00  0.00              
ATOM    111  CA  ARG   111      49.288  59.713  11.896  1.00  0.00              
ATOM    112  CA  PHE   112      48.756  59.803   8.316  1.00  0.00              
ATOM    113  CA  ILE   113      47.544  60.348   4.865  1.00  0.00              
ATOM    114  CA  PHE   114      48.019  57.529   2.392  1.00  0.00              
ATOM    115  CA  THR   115      47.562  58.017  -1.305  1.00  0.00              
ATOM    116  CA  GLU   116      46.689  54.953  -3.376  1.00  0.00              
ATOM    117  CA  ASP   117      47.213  55.012  -7.110  1.00  0.00              
ATOM    290  CA  LYS   290      49.303  33.505   0.318  1.00  0.00              
ATOM    291  CA  TYR   291      50.880  36.576   1.743  1.00  0.00              
ATOM    292  CA  MET   292      54.423  37.401   0.899  1.00  0.00              
ATOM    293  CA  ALA   293      56.272  40.067   2.863  1.00  0.00              
ATOM    294  CA  CYS   294      59.171  41.829   1.169  1.00  0.00              
ATOM    295  CA  LEU   295      61.561  43.707   3.348  1.00  0.00              
ATOM    296  CA  LYS   296      63.283  46.486   1.533  1.00  0.00              
ATOM    297  CA  ASP   297      65.767  47.524   4.104  1.00  0.00              
ATOM    298  CA  HIS   298      66.422  43.999   5.355  1.00  0.00              
TER                                                                             
END
