
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  126 (  126),  selected  126 , name T0372TS599_5-D1
# Molecule2: number of CA atoms  126 ( 1027),  selected  126 , name T0372_D1.pdb
# PARAMETERS: T0372TS599_5-D1.T0372_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    45        29 - 73          4.96    17.12
  LCS_AVERAGE:     29.39

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30        40 - 69          1.97    16.01
  LCS_AVERAGE:     16.13

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        72 - 92          0.99    25.73
  LCS_AVERAGE:      8.23

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  126
LCS_GDT     M       1     M       1      3    7   36     0    3    5   10   11   14   19   22   26   30   34   38   41   44   50   57   61   62   67   70 
LCS_GDT     I       2     I       2      5    7   36     2    5    5    8   11   14   19   22   26   30   34   38   41   44   50   57   61   62   67   70 
LCS_GDT     P       3     P       3      5    7   36     3    6    6   10   11   14   18   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     F       4     F       4      5    7   36     3    5    5   10   11   14   19   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     K       5     K       5      5    7   36     3    6    6   10   11   14   18   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     D       6     D       6      5    7   36     3    5    5    6   11   12   18   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     I       7     I       7      4    7   36     3    5    5    7   10   15   19   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     T       8     T       8      4    7   36     3    5    5    8   11   14   19   22   34   36   39   40   41   44   51   57   61   62   67   70 
LCS_GDT     L       9     L       9      4    8   36     3    4    6    9   18   25   27   32   35   38   39   40   41   44   51   57   61   62   67   70 
LCS_GDT     A      10     A      10      4   16   36     3    4    4    8   11   15   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     D      11     D      11     10   19   36     7    9   12   16   18   18   20   22   24   29   32   36   40   43   50   57   61   62   67   70 
LCS_GDT     R      12     R      12     11   19   36     7    9   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     D      13     D      13     11   19   36     7    9   12   16   18   18   20   22   25   29   32   37   41   44   51   57   61   62   67   70 
LCS_GDT     T      14     T      14     11   19   36     7    9   12   16   18   18   20   22   25   29   32   37   41   44   51   57   61   62   67   70 
LCS_GDT     I      15     I      15     11   19   36     7    9   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     T      16     T      16     11   19   36     7    9   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     A      17     A      17     11   19   36     7    9   11   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     F      18     F      18     11   19   36     5    9   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     T      19     T      19     11   19   36     5    9   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     M      20     M      20     11   19   36     5    9   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     K      21     K      21     11   19   36     5    9   11   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     S      22     S      22     11   19   36     5    9   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     D      23     D      23      6   19   36     3    7    8   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     R      24     R      24      6   19   36     3    7   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     R      25     R      25      6   19   36     3    7   10   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     N      26     N      26      6   19   36     3    7    7   12   18   18   20   22   24   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     C      27     C      27      4   19   44     3    5   12   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     D      28     D      28      4   19   44     3    4    5   16   18   18   20   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     L      29     L      29      4   19   45     3    4    5    7    9   13   19   22   25   33   38   41   42   44   51   57   61   62   67   70 
LCS_GDT     S      30     S      30      4    9   45     3    4    4    7    9   12   16   22   24   33   38   41   42   44   51   57   61   62   67   70 
LCS_GDT     F      31     F      31      4    9   45     3    4    4    7    9   12   14   19   24   33   37   41   42   44   51   57   61   62   67   70 
LCS_GDT     S      32     S      32      3    5   45     3    7    7    9   11   13   18   22   24   33   38   41   42   44   51   57   61   62   67   70 
LCS_GDT     N      33     N      33      3    5   45     3    3    4    5    5    7    9   18   21   28   34   38   42   43   46   53   58   62   66   70 
LCS_GDT     L      34     L      34      3    4   45     3    4    7   12   15   17   20   28   33   36   38   41   42   44   51   57   61   62   67   70 
LCS_GDT     C      35     C      35      3    3   45     3    4   12   19   27   30   34   34   35   38   39   41   42   44   51   57   61   62   67   70 
LCS_GDT     S      36     S      36      3    5   45     0    4    4    7    9   29   34   34   35   38   39   41   42   43   45   48   52   57   65   69 
LCS_GDT     W      37     W      37      3   25   45     1    6   16   23   27   32   34   34   35   38   39   41   42   43   45   48   50   54   61   66 
LCS_GDT     R      38     R      38      3   27   45     3    4    6   11   21   25   32   33   35   38   39   40   41   43   45   48   54   61   64   69 
LCS_GDT     F      39     F      39      3   27   45     3    4    6   15   19   25   28   33   35   37   39   40   41   43   45   48   50   54   59   64 
LCS_GDT     L      40     L      40      9   30   45     3   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   64 
LCS_GDT     Y      41     Y      41      9   30   45     3   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   54   61   66 
LCS_GDT     D      42     D      42      9   30   45     5   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   54   61   66 
LCS_GDT     T      43     T      43      9   30   45     5   13   19   23   27   32   34   34   35   38   39   41   42   43   51   57   61   62   67   70 
LCS_GDT     Q      44     Q      44     11   30   45     5   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   55   62   67   70 
LCS_GDT     F      45     F      45     11   30   45     5   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   54   62   67   70 
LCS_GDT     A      46     A      46     11   30   45     4   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     V      47     V      47     11   30   45     5   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     I      48     I      48     11   30   45     5   12   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     D      49     D      49     11   30   45     3    7   12   20   26   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     D      50     D      50     11   30   45     4   13   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     F      51     F      51     11   30   45     5   12   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     L      52     L      52     11   30   45     4   11   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     V      53     V      53     11   30   45     5   12   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   58   65   69 
LCS_GDT     F      54     F      54     11   30   45     5   13   19   23   27   32   34   34   35   38   39   41   42   44   51   57   61   62   67   70 
LCS_GDT     K      55     K      55     10   30   45     5   13   19   23   27   32   34   34   35   38   39   41   42   43   51   57   61   62   67   70 
LCS_GDT     F      56     F      56     10   30   45     4   13   19   23   27   32   34   34   35   38   39   41   42   43   50   57   61   62   67   70 
LCS_GDT     W      57     W      57     10   30   45     4   12   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   54   61   66 
LCS_GDT     A      58     A      58     10   30   45     4   11   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   54   59   64 
LCS_GDT     G      59     G      59     10   30   45     4   12   19   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     E      60     E      60      7   30   45     4    8   15   23   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   62 
LCS_GDT     Q      61     Q      61      7   30   45     4    6    7   10   26   32   34   34   35   38   39   41   42   43   45   48   50   54   59   64 
LCS_GDT     L      62     L      62      7   30   45     4    6   13   21   27   32   34   34   35   38   39   41   42   43   50   54   56   62   65   70 
LCS_GDT     A      63     A      63      7   30   45     4    6   12   22   27   32   34   34   35   38   39   41   42   44   51   57   61   62   67   70 
LCS_GDT     Y      64     Y      64      7   30   45     4   10   16   23   27   32   34   34   35   38   39   41   42   44   51   57   61   62   67   70 
LCS_GDT     M      65     M      65      7   30   45     4    6    7   10   21   32   34   34   35   38   39   41   42   44   50   56   61   62   67   70 
LCS_GDT     M      66     M      66      7   30   45     4    5    8   20   27   32   34   34   35   38   39   41   42   43   45   48   55   60   66   69 
LCS_GDT     P      67     P      67      5   30   45     4    4    8   11   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     V      68     V      68      5   30   45     4    4    6   10   24   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     G      69     G      69      5   30   45     4    4    9   20   27   32   34   34   35   38   39   41   42   43   45   48   50   52   55   57 
LCS_GDT     N      70     N      70      4   27   45     3    4    8   11   23   27   29   32   35   38   39   41   42   43   45   48   50   51   54   57 
LCS_GDT     G      71     G      71      4   27   45     3    5   14   20   23   27   29   31   31   32   33   37   40   42   45   48   50   50   53   57 
LCS_GDT     D      72     D      72     21   27   45    11   17   20   22   24   25   29   31   31   32   33   36   40   41   44   48   50   50   53   57 
LCS_GDT     L      73     L      73     21   27   45    11   17   20   22   24   27   29   31   31   32   33   37   40   42   45   48   50   50   53   57 
LCS_GDT     K      74     K      74     21   27   41    11   17   20   22   24   27   29   31   31   32   33   36   37   38   41   44   46   48   53   56 
LCS_GDT     A      75     A      75     21   27   40    11   17   20   22   24   27   29   31   31   32   33   36   37   38   41   44   46   48   53   56 
LCS_GDT     V      76     V      76     21   27   40    11   17   20   22   24   27   29   31   31   32   33   36   37   40   41   45   48   50   53   56 
LCS_GDT     L      77     L      77     21   27   40    11   17   20   22   24   27   29   31   31   32   33   36   40   41   44   48   50   50   53   57 
LCS_GDT     R      78     R      78     21   27   40    11   17   20   22   24   27   29   31   31   32   33   36   37   38   41   44   46   48   53   56 
LCS_GDT     K      79     K      79     21   27   40    11   17   20   22   24   27   29   31   31   32   33   36   37   38   41   44   46   48   53   56 
LCS_GDT     L      80     L      80     21   27   40    10   17   20   22   24   27   29   31   31   32   33   36   37   39   41   44   48   50   53   65 
LCS_GDT     I      81     I      81     21   27   40    10   17   20   22   24   27   29   31   31   32   33   36   37   39   41   51   53   56   64   65 
LCS_GDT     E      82     E      82     21   27   40    11   17   20   22   24   27   29   31   31   32   33   36   37   38   41   46   49   55   58   65 
LCS_GDT     D      83     D      83     21   27   40    10   17   20   22   24   27   29   31   31   32   33   36   37   38   41   46   49   55   58   65 
LCS_GDT     A      84     A      84     21   27   40    10   17   20   22   24   27   29   31   31   32   33   36   39   44   50   55   61   62   67   70 
LCS_GDT     D      85     D      85     21   27   40    10   17   20   22   24   27   29   31   31   32   33   37   39   44   50   55   61   62   67   70 
LCS_GDT     K      86     K      86     21   27   40     9   17   20   22   24   27   29   31   31   32   33   36   39   44   46   53   58   62   66   68 
LCS_GDT     E      87     E      87     21   27   40     7   17   20   22   24   27   29   31   31   32   33   36   36   38   46   53   61   62   67   70 
LCS_GDT     K      88     K      88     21   27   40    10   17   20   22   24   27   29   31   31   32   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     H      89     H      89     21   27   40     9   17   20   22   24   27   29   31   31   32   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     N      90     N      90     21   27   40     3   15   20   22   24   27   29   31   31   32   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     F      91     F      91     21   27   39     5    8   20   22   24   27   29   31   31   32   34   38   41   44   51   57   61   62   67   70 
LCS_GDT     C      92     C      92     21   27   39    11   15   17   22   24   27   30   33   35   38   39   41   42   44   51   57   61   62   67   70 
LCS_GDT     M      93     M      93      7   27   39    11   15   17   23   27   32   34   34   35   38   39   41   42   44   51   57   61   62   67   70 
LCS_GDT     L      94     L      94      7   27   39     5   10   15   18   24   27   29   31   35   37   38   40   41   44   51   57   61   62   67   70 
LCS_GDT     G      95     G      95     15   27   39     5    9   14   19   24   27   29   31   31   32   34   36   41   44   51   57   61   62   67   70 
LCS_GDT     V      96     V      96     15   27   39     4   12   14   15   20   24   25   30   31   32   34   36   41   44   51   57   61   62   67   70 
LCS_GDT     C      97     C      97     15   27   39     8   12   14   15   22   24   27   30   31   32   33   36   39   44   51   57   61   62   67   70 
LCS_GDT     S      98     S      98     15   16   39    10   12   14   15   15   20   23   27   29   32   33   36   41   44   51   57   61   62   67   70 
LCS_GDT     N      99     N      99     15   16   39    10   12   14   15   15   15   16   17   21   24   29   31   36   43   50   56   60   62   67   70 
LCS_GDT     M     100     M     100     15   16   39    10   12   14   15   15   15   16   17   21   22   27   31   33   36   43   47   55   62   67   70 
LCS_GDT     R     101     R     101     15   16   39    10   12   14   15   15   17   24   24   27   30   34   36   41   43   47   53   57   62   67   70 
LCS_GDT     A     102     A     102     15   16   37    10   12   14   15   15   15   22   23   26   29   31   36   41   43   45   52   56   62   67   70 
LCS_GDT     D     103     D     103     15   16   23    10   12   14   15   15   15   16   17   21   22   24   27   30   35   39   43   49   58   65   69 
LCS_GDT     L     104     L     104     15   16   23    10   12   14   15   15   15   16   17   19   21   30   32   36   42   45   48   49   52   65   69 
LCS_GDT     E     105     E     105     15   16   23    10   12   14   15   15   15   16   24   28   32   36   38   40   43   45   48   49   58   65   69 
LCS_GDT     A     106     A     106     15   16   23    10   12   14   15   15   15   16   17   18   20   24   32   34   39   43   48   49   52   60   66 
LCS_GDT     I     107     I     107     15   16   23    10   12   14   15   15   15   16   17   18   20   22   26   27   30   32   37   44   47   54   56 
LCS_GDT     L     108     L     108     15   16   23    10   12   14   15   15   15   16   17   17   19   21   23   26   29   32   37   45   47   52   56 
LCS_GDT     P     109     P     109     15   16   23     6    7   10   15   15   15   16   17   17   18   19   22   25   29   43   47   49   52   55   57 
LCS_GDT     E     110     E     110      4    9   23     3    4    4    6    8   10   12   14   16   18   19   21   22   23   27   34   41   47   55   56 
LCS_GDT     R     111     R     111      7    9   22     4    6    9    9   10   11   13   15   17   18   19   20   21   23   25   27   37   42   47   49 
LCS_GDT     F     112     F     112      7    9   22     6    7    9    9   10   11   13   14   16   17   18   20   21   23   25   32   41   44   49   50 
LCS_GDT     I     113     I     113      7    9   22     6    7    9    9   10   11   13   14   16   17   17   19   21   26   32   37   41   44   49   54 
LCS_GDT     F     114     F     114      7    9   22     4    6    9    9   10   11   13   14   16   17   17   18   20   26   32   41   43   52   55   56 
LCS_GDT     T     115     T     115      7    9   22     6    7    9    9   10   11   13   14   16   17   19   22   25   34   36   40   48   52   55   56 
LCS_GDT     E     116     E     116      7    9   22     6    7    9    9   10   11   13   14   18   21   25   35   41   43   45   48   49   52   55   56 
LCS_GDT     D     117     D     117      7    9   22     6    7    9    9   10   11   13   14   16   17   25   29   41   43   45   47   49   52   55   56 
LCS_GDT     K     290     K     290      6    9   22     3    6    6   20   21   21   23   26   27   32   33   36   36   38   40   45   46   48   51   54 
LCS_GDT     Y     291     Y     291      6    9   21     4    6    6    8   13   20   23   26   29   32   34   36   41   43   45   53   56   62   67   70 
LCS_GDT     M     292     M     292      6    9   21     4    6    6    8   10   10   17   22   26   32   33   36   41   43   45   48   49   58   65   68 
LCS_GDT     A     293     A     293      6    9   14     3    6    6   16   21   25   28   31   35   37   38   40   41   44   51   57   61   62   67   70 
LCS_GDT     C     294     C     294      6    9   11     4    6    6    8   10   13   23   30   34   37   38   40   41   43   50   57   61   62   67   70 
LCS_GDT     L     295     L     295      6    9   11     4    6    6    8   10   10   15   17   24   29   32   38   41   44   51   57   61   62   67   70 
LCS_GDT     K     296     K     296      6    9   11     4    5    6    8   10   12   15   18   21   25   28   35   40   44   50   57   61   62   67   70 
LCS_GDT     D     297     D     297      6    9   11     4    5    6    8   10   12   15   18   23   25   32   36   41   44   51   57   61   62   67   70 
LCS_GDT     H     298     H     298      3    9   10     3    4    5   10   12   15   17   22   26   30   34   38   41   44   51   57   61   62   67   70 
LCS_AVERAGE  LCS_A:  17.92  (   8.23   16.13   29.39 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     17     20     23     27     32     34     34     35     38     39     41     42     44     51     57     61     62     67     70 
GDT PERCENT_CA   8.73  13.49  15.87  18.25  21.43  25.40  26.98  26.98  27.78  30.16  30.95  32.54  33.33  34.92  40.48  45.24  48.41  49.21  53.17  55.56
GDT RMS_LOCAL    0.28   0.61   0.75   1.31   1.69   2.00   2.15   2.15   2.29   2.73   2.89   3.71   3.88   4.70   5.42   5.64   5.92   6.00   6.42   6.65
GDT RMS_ALL_CA  25.40  25.88  25.97  16.00  16.07  16.01  16.06  16.06  16.08  16.05  16.01  16.60  16.73  14.86  14.60  14.82  14.70  14.61  14.39  14.32

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         34.596
LGA    I       2      I       2         29.124
LGA    P       3      P       3         25.906
LGA    F       4      F       4         20.557
LGA    K       5      K       5         17.260
LGA    D       6      D       6         12.280
LGA    I       7      I       7          9.333
LGA    T       8      T       8          6.422
LGA    L       9      L       9          5.776
LGA    A      10      A      10          8.875
LGA    D      11      D      11         13.108
LGA    R      12      R      12         12.422
LGA    D      13      D      13         16.425
LGA    T      14      T      14         17.875
LGA    I      15      I      15         15.669
LGA    T      16      T      16         17.975
LGA    A      17      A      17         22.267
LGA    F      18      F      18         22.669
LGA    T      19      T      19         20.534
LGA    M      20      M      20         25.644
LGA    K      21      K      21         30.053
LGA    S      22      S      22         27.471
LGA    D      23      D      23         28.193
LGA    R      24      R      24         22.430
LGA    R      25      R      25         22.358
LGA    N      26      N      26         18.721
LGA    C      27      C      27         16.923
LGA    D      28      D      28         12.832
LGA    L      29      L      29         12.020
LGA    S      30      S      30         13.297
LGA    F      31      F      31          9.976
LGA    S      32      S      32         12.997
LGA    N      33      N      33         14.033
LGA    L      34      L      34          8.247
LGA    C      35      C      35          3.612
LGA    S      36      S      36          3.804
LGA    W      37      W      37          1.969
LGA    R      38      R      38          5.529
LGA    F      39      F      39          6.412
LGA    L      40      L      40          1.691
LGA    Y      41      Y      41          1.720
LGA    D      42      D      42          1.425
LGA    T      43      T      43          0.934
LGA    Q      44      Q      44          0.746
LGA    F      45      F      45          1.239
LGA    A      46      A      46          1.430
LGA    V      47      V      47          1.389
LGA    I      48      I      48          1.038
LGA    D      49      D      49          2.719
LGA    D      50      D      50          2.222
LGA    F      51      F      51          2.237
LGA    L      52      L      52          2.592
LGA    V      53      V      53          1.862
LGA    F      54      F      54          1.220
LGA    K      55      K      55          0.843
LGA    F      56      F      56          0.932
LGA    W      57      W      57          1.476
LGA    A      58      A      58          2.459
LGA    G      59      G      59          2.037
LGA    E      60      E      60          1.237
LGA    Q      61      Q      61          3.413
LGA    L      62      L      62          2.466
LGA    A      63      A      63          1.858
LGA    Y      64      Y      64          1.557
LGA    M      65      M      65          3.698
LGA    M      66      M      66          2.308
LGA    P      67      P      67          3.005
LGA    V      68      V      68          3.372
LGA    G      69      G      69          2.133
LGA    N      70      N      70          6.405
LGA    G      71      G      71         12.629
LGA    D      72      D      72         14.991
LGA    L      73      L      73         11.970
LGA    K      74      K      74         18.592
LGA    A      75      A      75         21.500
LGA    V      76      V      76         16.789
LGA    L      77      L      77         15.032
LGA    R      78      R      78         22.210
LGA    K      79      K      79         23.714
LGA    L      80      L      80         18.758
LGA    I      81      I      81         20.036
LGA    E      82      E      82         26.841
LGA    D      83      D      83         26.115
LGA    A      84      A      84         21.940
LGA    D      85      D      85         26.860
LGA    K      86      K      86         31.876
LGA    E      87      E      87         28.777
LGA    K      88      K      88         26.600
LGA    H      89      H      89         19.636
LGA    N      90      N      90         15.207
LGA    F      91      F      91         12.149
LGA    C      92      C      92          5.502
LGA    M      93      M      93          1.634
LGA    L      94      L      94          7.149
LGA    G      95      G      95         11.965
LGA    V      96      V      96         14.342
LGA    C      97      C      97         20.895
LGA    S      98      S      98         24.029
LGA    N      99      N      99         26.303
LGA    M     100      M     100         21.065
LGA    R     101      R     101         17.846
LGA    A     102      A     102         21.978
LGA    D     103      D     103         22.149
LGA    L     104      L     104         16.324
LGA    E     105      E     105         15.650
LGA    A     106      A     106         19.964
LGA    I     107      I     107         18.785
LGA    L     108      L     108         13.542
LGA    P     109      P     109         14.423
LGA    E     110      E     110         16.802
LGA    R     111      R     111         15.740
LGA    F     112      F     112         17.542
LGA    I     113      I     113         16.568
LGA    F     114      F     114         18.688
LGA    T     115      T     115         18.641
LGA    E     116      E     116         19.981
LGA    D     117      D     117         21.720
LGA    K     290      K     290         19.812
LGA    Y     291      Y     291         16.082
LGA    M     292      M     292         12.453
LGA    A     293      A     293          9.196
LGA    C     294      C     294          7.360
LGA    L     295      L     295          9.835
LGA    K     296      K     296         13.282
LGA    D     297      D     297         14.882
LGA    H     298      H     298         15.838

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  126  126    4.0     34    2.15    25.992    23.442     1.513

LGA_LOCAL      RMSD =  2.148  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.000  Number of atoms =  126 
Std_ALL_ATOMS  RMSD = 13.444  (standard rmsd on all 126 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.597252 * X  +   0.771868 * Y  +  -0.217968 * Z  +  22.398294
  Y_new =   0.098433 * X  +   0.199168 * Y  +   0.975009 * Z  +  47.021362
  Z_new =   0.795991 * X  +  -0.603781 * Y  +   0.042976 * Z  +  -0.525177 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.499738    1.641855  [ DEG:   -85.9286     94.0714 ]
  Theta =  -0.920642   -2.220950  [ DEG:   -52.7489   -127.2511 ]
  Phi   =   0.163342   -2.978251  [ DEG:     9.3588   -170.6412 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS599_5-D1                               
REMARK     2: T0372_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS599_5-D1.T0372_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  126  126   4.0   34   2.15  23.442    13.44
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS599_5-D1
PFRMAT TS                                                                       
TARGET T0372                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      43.400  30.672  11.490  1.00  0.00              
ATOM      2  CA  ILE     2      45.422  34.182  11.534  1.00  0.00              
ATOM      3  CA  PRO     3      43.783  37.362  12.162  1.00  0.00              
ATOM      4  CA  PHE     4      45.720  40.266  12.988  1.00  0.00              
ATOM      5  CA  LYS     5      43.912  43.536  13.775  1.00  0.00              
ATOM      6  CA  ASP     6      46.469  46.318  13.740  1.00  0.00              
ATOM      7  CA  ILE     7      49.894  44.798  13.127  1.00  0.00              
ATOM      8  CA  THR     8      52.673  47.202  13.891  1.00  0.00              
ATOM      9  CA  LEU     9      55.733  47.158  11.688  1.00  0.00              
ATOM     10  CA  ALA    10      58.941  48.083  13.453  1.00  0.00              
ATOM     11  CA  ASP    11      61.434  50.146  11.666  1.00  0.00              
ATOM     12  CA  ARG    12      59.657  53.183  10.364  1.00  0.00              
ATOM     13  CA  ASP    13      61.884  53.660   7.337  1.00  0.00              
ATOM     14  CA  THR    14      61.218  50.023   6.306  1.00  0.00              
ATOM     15  CA  ILE    15      57.458  50.434   6.719  1.00  0.00              
ATOM     16  CA  THR    16      57.390  53.578   4.583  1.00  0.00              
ATOM     17  CA  ALA    17      59.257  51.829   1.980  1.00  0.00              
ATOM     18  CA  PHE    18      56.927  48.868   1.993  1.00  0.00              
ATOM     19  CA  THR    19      53.975  51.191   1.527  1.00  0.00              
ATOM     20  CA  MET    20      55.783  52.960  -1.340  1.00  0.00              
ATOM     21  CA  LYS    21      56.309  49.725  -3.129  1.00  0.00              
ATOM     22  CA  SER    22      52.744  48.617  -3.018  1.00  0.00              
ATOM     23  CA  ASP    23      51.157  51.994  -3.865  1.00  0.00              
ATOM     24  CA  ARG    24      48.941  52.163  -0.884  1.00  0.00              
ATOM     25  CA  ARG    25      48.323  55.251   1.109  1.00  0.00              
ATOM     26  CA  ASN    26      47.626  54.672   4.542  1.00  0.00              
ATOM     27  CA  CYS    27      45.840  57.291   6.198  1.00  0.00              
ATOM     28  CA  ASP    28      45.339  56.217   9.761  1.00  0.00              
ATOM     29  CA  LEU    29      48.611  54.538  10.215  1.00  0.00              
ATOM     30  CA  SER    30      51.241  55.711  12.591  1.00  0.00              
ATOM     31  CA  PHE    31      52.543  52.907  14.719  1.00  0.00              
ATOM     32  CA  SER    32      55.653  52.487  12.640  1.00  0.00              
ATOM     33  CA  ASN    33      53.622  51.436   9.581  1.00  0.00              
ATOM     34  CA  LEU    34      50.230  50.170  10.354  1.00  0.00              
ATOM     35  CA  CYS    35      49.194  46.999   8.606  1.00  0.00              
ATOM     36  CA  SER    36      45.735  45.413   9.058  1.00  0.00              
ATOM     37  CA  TRP    37      45.154  41.756   8.414  1.00  0.00              
ATOM     38  CA  ARG    38      41.729  40.106   8.840  1.00  0.00              
ATOM     39  CA  PHE    39      41.690  36.619   7.375  1.00  0.00              
ATOM     40  CA  LEU    40      44.670  37.045   5.054  1.00  0.00              
ATOM     41  CA  TYR    41      43.194  39.796   2.946  1.00  0.00              
ATOM     42  CA  ASP    42      45.555  42.676   2.667  1.00  0.00              
ATOM     43  CA  THR    43      44.022  45.959   3.574  1.00  0.00              
ATOM     44  CA  GLN    44      44.904  49.104   1.630  1.00  0.00              
ATOM     45  CA  PHE    45      43.582  52.507   2.779  1.00  0.00              
ATOM     46  CA  ALA    46      43.621  55.429   0.421  1.00  0.00              
ATOM     47  CA  VAL    47      42.786  58.924   1.671  1.00  0.00              
ATOM     48  CA  ILE    48      41.713  61.536  -0.830  1.00  0.00              
ATOM     49  CA  ASP    49      40.629  64.992   0.252  1.00  0.00              
ATOM     50  CA  ASP    50      37.461  64.043   1.982  1.00  0.00              
ATOM     51  CA  PHE    51      36.930  60.593   0.620  1.00  0.00              
ATOM     52  CA  LEU    52      38.038  57.540   2.124  1.00  0.00              
ATOM     53  CA  VAL    53      38.854  54.476  -0.015  1.00  0.00              
ATOM     54  CA  PHE    54      39.202  51.121   1.483  1.00  0.00              
ATOM     55  CA  LYS    55      40.669  48.267  -0.487  1.00  0.00              
ATOM     56  CA  PHE    56      40.260  44.657   0.780  1.00  0.00              
ATOM     57  CA  TRP    57      41.928  41.814  -0.953  1.00  0.00              
ATOM     58  CA  ALA    58      40.336  38.416  -0.656  1.00  0.00              
ATOM     59  CA  GLY    59      40.356  36.294  -3.826  1.00  0.00              
ATOM     60  CA  GLU    60      38.014  38.473  -5.801  1.00  0.00              
ATOM     61  CA  GLN    61      38.902  41.936  -4.719  1.00  0.00              
ATOM     62  CA  LEU    62      36.621  43.861  -2.547  1.00  0.00              
ATOM     63  CA  ALA    63      36.582  47.636  -2.707  1.00  0.00              
ATOM     64  CA  TYR    64      34.999  49.666   0.058  1.00  0.00              
ATOM     65  CA  MET    65      34.244  53.341  -0.522  1.00  0.00              
ATOM     66  CA  MET    66      33.687  55.554   2.416  1.00  0.00              
ATOM     67  CA  PRO    67      32.457  59.119   2.064  1.00  0.00              
ATOM     68  CA  VAL    68      34.503  61.461   4.077  1.00  0.00              
ATOM     69  CA  GLY    69      33.854  63.631   7.038  1.00  0.00              
ATOM     70  CA  ASN    70      36.871  63.485   9.260  1.00  0.00              
ATOM     71  CA  GLY    71      35.693  61.691  12.300  1.00  0.00              
ATOM     72  CA  ASP    72      33.489  59.062  10.720  1.00  0.00              
ATOM     73  CA  LEU    73      34.456  56.826   7.903  1.00  0.00              
ATOM     74  CA  LYS    74      36.183  54.144   9.832  1.00  0.00              
ATOM     75  CA  ALA    75      33.389  53.665  12.331  1.00  0.00              
ATOM     76  CA  VAL    76      30.683  53.419   9.758  1.00  0.00              
ATOM     77  CA  LEU    77      32.495  50.925   7.618  1.00  0.00              
ATOM     78  CA  ARG    78      33.328  48.732  10.506  1.00  0.00              
ATOM     79  CA  LYS    79      29.714  48.640  11.678  1.00  0.00              
ATOM     80  CA  LEU    80      28.306  47.744   8.309  1.00  0.00              
ATOM     81  CA  ILE    81      30.801  44.878   7.906  1.00  0.00              
ATOM     82  CA  GLU    82      29.882  43.538  11.207  1.00  0.00              
ATOM     83  CA  ASP    83      26.311  43.601  10.614  1.00  0.00              
ATOM     84  CA  ALA    84      26.623  41.714   7.388  1.00  0.00              
ATOM     85  CA  ASP    85      28.486  39.040   9.111  1.00  0.00              
ATOM     86  CA  LYS    86      25.921  38.321  11.643  1.00  0.00              
ATOM     87  CA  GLU    87      23.222  38.032   9.093  1.00  0.00              
ATOM     88  CA  LYS    88      25.296  35.844   6.866  1.00  0.00              
ATOM     89  CA  HIS    89      25.634  38.227   3.941  1.00  0.00              
ATOM     90  CA  ASN    90      28.816  38.527   1.964  1.00  0.00              
ATOM     91  CA  PHE    91      29.524  42.186   1.797  1.00  0.00              
ATOM     92  CA  CYS    92      31.944  43.857  -0.469  1.00  0.00              
ATOM     93  CA  MET    93      31.347  47.480  -1.439  1.00  0.00              
ATOM     94  CA  LEU    94      32.638  48.738  -4.776  1.00  0.00              
ATOM     95  CA  GLY    95      32.951  52.386  -5.497  1.00  0.00              
ATOM     96  CA  VAL    96      32.345  53.352  -9.048  1.00  0.00              
ATOM     97  CA  CYS    97      34.844  55.548 -10.845  1.00  0.00              
ATOM     98  CA  SER    98      33.784  58.631 -12.646  1.00  0.00              
ATOM     99  CA  ASN    99      34.316  56.971 -16.072  1.00  0.00              
ATOM    100  CA  MET   100      31.826  54.273 -15.151  1.00  0.00              
ATOM    101  CA  ARG   101      29.195  56.739 -14.015  1.00  0.00              
ATOM    102  CA  ALA   102      29.494  58.626 -17.278  1.00  0.00              
ATOM    103  CA  ASP   103      29.073  55.398 -19.240  1.00  0.00              
ATOM    104  CA  LEU   104      26.017  54.351 -17.258  1.00  0.00              
ATOM    105  CA  GLU   105      24.331  57.725 -17.749  1.00  0.00              
ATOM    106  CA  ALA   106      24.930  57.463 -21.467  1.00  0.00              
ATOM    107  CA  ILE   107      23.430  53.935 -21.604  1.00  0.00              
ATOM    108  CA  LEU   108      20.427  54.815 -19.515  1.00  0.00              
ATOM    109  CA  PRO   109      19.508  57.987 -21.332  1.00  0.00              
ATOM    110  CA  GLU   110      19.091  56.490 -24.830  1.00  0.00              
ATOM    111  CA  ARG   111      16.794  53.679 -23.822  1.00  0.00              
ATOM    112  CA  PHE   112      19.118  50.772 -23.519  1.00  0.00              
ATOM    113  CA  ILE   113      18.316  47.623 -21.745  1.00  0.00              
ATOM    114  CA  PHE   114      21.237  45.603 -20.436  1.00  0.00              
ATOM    115  CA  THR   115      20.817  42.337 -18.619  1.00  0.00              
ATOM    116  CA  GLU   116      23.607  41.165 -16.318  1.00  0.00              
ATOM    117  CA  ASP   117      24.511  37.560 -15.990  1.00  0.00              
ATOM    290  CA  LYS   290      24.065  54.697 -10.822  1.00  0.00              
ATOM    291  CA  TYR   291      27.221  52.710 -11.345  1.00  0.00              
ATOM    292  CA  MET   292      26.425  49.041 -11.637  1.00  0.00              
ATOM    293  CA  ALA   293      28.887  46.312 -10.927  1.00  0.00              
ATOM    294  CA  CYS   294      28.162  42.629 -11.420  1.00  0.00              
ATOM    295  CA  LEU   295      30.386  40.276  -9.509  1.00  0.00              
ATOM    296  CA  LYS   296      31.148  36.925 -10.968  1.00  0.00              
ATOM    297  CA  ASP   297      29.869  34.633  -8.178  1.00  0.00              
ATOM    298  CA  HIS   298      26.903  36.804  -7.307  1.00  0.00              
TER                                                                             
END
